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Search of human proteins with 153792060
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|153792060 SERTA domain containing 1 [Homo sapiens]
(236 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|153792060 SERTA domain containing 1 [Homo sapiens] 471 e-133
gi|42741652 RPA-binding trans-activator [Homo sapiens] 72 4e-13
gi|15718684 RPA-binding trans-activator [Homo sapiens] 72 4e-13
gi|7661926 SERTA domain containing 2 [Homo sapiens] 60 1e-09
gi|22027509 cell division cycle associated 4 [Homo sapiens] 53 3e-07
gi|22027511 cell division cycle associated 4 [Homo sapiens] 53 3e-07
gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sap... 43 2e-04
gi|4505859 pleiomorphic adenoma gene-like 2 [Homo sapiens] 35 0.056
gi|148727255 microtubule associated serine/threonine kinase fami... 35 0.056
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 35 0.073
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 35 0.073
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 35 0.073
gi|50428940 mediator complex subunit 25 [Homo sapiens] 35 0.073
gi|54873602 hypothetical protein LOC220382 [Homo sapiens] 35 0.073
gi|194097341 period 1 [Homo sapiens] 34 0.096
gi|156151383 zinc finger CCCH-type containing 12A [Homo sapiens] 34 0.096
gi|210032509 hypothetical protein LOC100130302 [Homo sapiens] 34 0.096
gi|206597502 NESH protein isoform 2 [Homo sapiens] 34 0.096
gi|7705981 NESH protein isoform 1 [Homo sapiens] 34 0.096
gi|54873613 agrin [Homo sapiens] 34 0.13
gi|208022661 hypothetical protein LOC57701 [Homo sapiens] 34 0.13
gi|157364926 dystrotelin [Homo sapiens] 34 0.13
gi|40288203 hypothetical protein LOC219287 isoform 1 [Homo sapiens] 34 0.13
gi|102469037 jun D proto-oncogene [Homo sapiens] 33 0.16
gi|24307909 ral guanine nucleotide dissociation stimulator isofo... 33 0.16
gi|108796058 ral guanine nucleotide dissociation stimulator isof... 33 0.16
gi|29337296 melanoma antigen family D, 4B isoform 2 [Homo sapiens] 33 0.16
gi|29337294 melanoma antigen family D, 4B isoform 1 [Homo sapiens] 33 0.16
gi|29337292 melanoma antigen family D, 4B isoform 1 [Homo sapiens] 33 0.16
gi|7705555 iroquois homeobox 4 [Homo sapiens] 33 0.16
>gi|153792060 SERTA domain containing 1 [Homo sapiens]
Length = 236
Score = 471 bits (1211), Expect = e-133
Identities = 236/236 (100%), Positives = 236/236 (100%)
Query: 1 MLSKGLKRKREEEEEKEPLAVDSWWLDPGHTAVAQAPPAVASSSLFDLSVLKLHHSLQQS 60
MLSKGLKRKREEEEEKEPLAVDSWWLDPGHTAVAQAPPAVASSSLFDLSVLKLHHSLQQS
Sbjct: 1 MLSKGLKRKREEEEEKEPLAVDSWWLDPGHTAVAQAPPAVASSSLFDLSVLKLHHSLQQS 60
Query: 61 EPDLRHLVLVVNTLRRIQASMAPAAALPPVPSPPAAPSVADNLLASSDAALSASMASLLE 120
EPDLRHLVLVVNTLRRIQASMAPAAALPPVPSPPAAPSVADNLLASSDAALSASMASLLE
Sbjct: 61 EPDLRHLVLVVNTLRRIQASMAPAAALPPVPSPPAAPSVADNLLASSDAALSASMASLLE 120
Query: 121 DLSHIEGLSQAPQPLADEGPPGRSIGGAAPSLGALDLLGPATGCLLDDGLEGLFEDIDTS 180
DLSHIEGLSQAPQPLADEGPPGRSIGGAAPSLGALDLLGPATGCLLDDGLEGLFEDIDTS
Sbjct: 121 DLSHIEGLSQAPQPLADEGPPGRSIGGAAPSLGALDLLGPATGCLLDDGLEGLFEDIDTS 180
Query: 181 MYDNELWAPASEGLKPGPEDGPGKEEAPELDEAELDYLMDVLVGTQALERPPGPGR 236
MYDNELWAPASEGLKPGPEDGPGKEEAPELDEAELDYLMDVLVGTQALERPPGPGR
Sbjct: 181 MYDNELWAPASEGLKPGPEDGPGKEEAPELDEAELDYLMDVLVGTQALERPPGPGR 236
>gi|42741652 RPA-binding trans-activator [Homo sapiens]
Length = 196
Score = 72.0 bits (175), Expect = 4e-13
Identities = 72/228 (31%), Positives = 108/228 (47%), Gaps = 42/228 (18%)
Query: 5 GLKRKREEEEEKEPLAVDSW-WLDPGHTAVAQAPPAVASSSLFDLSVLKLHHSLQQSEPD 63
GLKRK + EE+E + W W G + QA L +S+ K+ SL P
Sbjct: 4 GLKRKHSDLEEEE----ERWEWSPAGLQSYQQA--------LLRISLDKVQRSLGPRAPS 51
Query: 64 LRHLVLVVNTLRRIQAS--MAPAAALPPVPSPPAAPSVADNLLASSDAALSASMASLLED 121
LR VL+ NTL+++QA+ +APA ALPP P L D +LSA++ S+L +
Sbjct: 52 LRRHVLIHNTLQQLQAALRLAPAPALPPEPL----------FLGEEDFSLSATIGSILRE 101
Query: 122 L-SHIEGLSQAPQPLADEGPPGRSIGGAAPSLGALDLLGPATGCLLDDGLEGLFEDIDTS 180
L + ++G P+ G P + L ++ L D GL+ F DIDTS
Sbjct: 102 LDTSMDGTEPPQNPVTPLGLQNE----VPPQPDPVFLEALSSRYLGDSGLDDFFLDIDTS 157
Query: 181 MYDNELWAPASEGLKPGPED---GPGKEEAPELDEAELDYLMDVLVGT 225
+ E PA +P P + PG E ELD++M++++G+
Sbjct: 158 AVEKE---PARAPPEP-PHNLFCAPGSWE-----WNELDHIMEIILGS 196
>gi|15718684 RPA-binding trans-activator [Homo sapiens]
Length = 196
Score = 72.0 bits (175), Expect = 4e-13
Identities = 72/228 (31%), Positives = 108/228 (47%), Gaps = 42/228 (18%)
Query: 5 GLKRKREEEEEKEPLAVDSW-WLDPGHTAVAQAPPAVASSSLFDLSVLKLHHSLQQSEPD 63
GLKRK + EE+E + W W G + QA L +S+ K+ SL P
Sbjct: 4 GLKRKHSDLEEEE----ERWEWSPAGLQSYQQA--------LLRISLDKVQRSLGPRAPS 51
Query: 64 LRHLVLVVNTLRRIQAS--MAPAAALPPVPSPPAAPSVADNLLASSDAALSASMASLLED 121
LR VL+ NTL+++QA+ +APA ALPP P L D +LSA++ S+L +
Sbjct: 52 LRRHVLIHNTLQQLQAALRLAPAPALPPEPL----------FLGEEDFSLSATIGSILRE 101
Query: 122 L-SHIEGLSQAPQPLADEGPPGRSIGGAAPSLGALDLLGPATGCLLDDGLEGLFEDIDTS 180
L + ++G P+ G P + L ++ L D GL+ F DIDTS
Sbjct: 102 LDTSMDGTEPPQNPVTPLGLQNE----VPPQPDPVFLEALSSRYLGDSGLDDFFLDIDTS 157
Query: 181 MYDNELWAPASEGLKPGPED---GPGKEEAPELDEAELDYLMDVLVGT 225
+ E PA +P P + PG E ELD++M++++G+
Sbjct: 158 AVEKE---PARAPPEP-PHNLFCAPGSWE-----WNELDHIMEIILGS 196
>gi|7661926 SERTA domain containing 2 [Homo sapiens]
Length = 314
Score = 60.5 bits (145), Expect = 1e-09
Identities = 87/319 (27%), Positives = 124/319 (38%), Gaps = 99/319 (31%)
Query: 1 MLSKGLKRKREEEEEKEPLAVDSWWLDPGHTAVAQAPPAVASSSLFDLSVLKLHHSLQQS 60
ML KG KRK +E E+ + S P + + ++F++S++KL++ +
Sbjct: 1 MLGKGGKRKFDEHEDGLEGKIVSPCDGPSKVSYT-----LQRQTIFNISLMKLYNHRPLT 55
Query: 61 EPDLRHLVLVVNTLRRIQASMAPAAALPPVPSPPAAPSV-----------ADNLLAS--- 106
EP L+ VL+ N LRRIQ + +L P+ +P + P+ A + LAS
Sbjct: 56 EPSLQKTVLINNMLRRIQEELKQEGSLRPMFTPSSQPTTEPSDSYREAPPAFSHLASPSS 115
Query: 107 ------SDAALSASM--ASLLEDLSHIEGLSQAPQPLADE--GPPG-------------- 142
S L A + ASLLED SQA QP A PP
Sbjct: 116 HPCDLGSTTPLEACLTPASLLEDDDDTFCTSQAMQPTAPTKLSPPALLPEKDSFSSALDE 175
Query: 143 ------------------RSIGGAAPSLGALDLLGP----------------------AT 162
S+ G + G L GP +T
Sbjct: 176 IEELCPTSTSTEAATAATDSVKGTSSEAGTQKLDGPQESRADDSKLMDSLPGNFEITTST 235
Query: 163 GCLLDDGLEG-LFEDIDTSMYDNELWAPAS---EGLKPGPEDGPGKEEAP---------- 208
G L D L+ LF DIDTSMYD + +S + P D K AP
Sbjct: 236 GFLTDLTLDDILFADIDTSMYDFDPCTSSSGTASKMAPVSADDLLKTLAPYSSQPVTPSQ 295
Query: 209 --ELDEAELDYLMDVLVGT 225
++D ELD++M+VLVG+
Sbjct: 296 PFKMDLTELDHIMEVLVGS 314
>gi|22027509 cell division cycle associated 4 [Homo sapiens]
Length = 241
Score = 52.8 bits (125), Expect = 3e-07
Identities = 71/258 (27%), Positives = 109/258 (42%), Gaps = 50/258 (19%)
Query: 1 MLSKGLKRKREEEEEKEPLAVDSWWLDPGHTAVAQAPPAVASSSLFDLSVLKLHHSLQQS 60
M ++GLKRK EE A+ G V+ ++ SL D+S++KL
Sbjct: 1 MFARGLKRKCVGHEEDVEGAL------AGLKTVSSY--SLQRQSLLDMSLVKLQLCHMLV 52
Query: 61 EPDLRHLVLVVNTLRRIQASMAPAAALPPVPSPPAAPSVADNLLASSDAALSASM----- 115
EP+L VL+ NT+R+IQ M V +P AA + L S++ A+
Sbjct: 53 EPNLCRSVLIANTVRQIQEEMTQDGTWRTV-APQAAERAPLDRLVSTEILCRAAWGQEGA 111
Query: 116 --ASLLEDLSHIEG---------LSQAPQPLADEG----PPGRSIGGAAPSLG----ALD 156
A L D H +G +QAP+ L P + G SL L+
Sbjct: 112 HPAPGLGD-GHTQGPVSDLCPVTSAQAPRHLQSSAWEMDGPRENRGSFHKSLDQIFETLE 170
Query: 157 LLGPATGCLLDDGLEGLFEDIDTSMYD-NELWAPASEGLKPGPEDG--------PGKEEA 207
P+ +E LF D+D+ YD + + G +PGP +G PG +
Sbjct: 171 TKNPSC-------MEELFSDVDSPYYDLDTVLTGMMGGARPGPCEGLEGLAPATPGPSSS 223
Query: 208 PELDEAELDYLMDVLVGT 225
+ D ELD+++++LV T
Sbjct: 224 CKSDLGELDHVVEILVET 241
>gi|22027511 cell division cycle associated 4 [Homo sapiens]
Length = 241
Score = 52.8 bits (125), Expect = 3e-07
Identities = 71/258 (27%), Positives = 109/258 (42%), Gaps = 50/258 (19%)
Query: 1 MLSKGLKRKREEEEEKEPLAVDSWWLDPGHTAVAQAPPAVASSSLFDLSVLKLHHSLQQS 60
M ++GLKRK EE A+ G V+ ++ SL D+S++KL
Sbjct: 1 MFARGLKRKCVGHEEDVEGAL------AGLKTVSSY--SLQRQSLLDMSLVKLQLCHMLV 52
Query: 61 EPDLRHLVLVVNTLRRIQASMAPAAALPPVPSPPAAPSVADNLLASSDAALSASM----- 115
EP+L VL+ NT+R+IQ M V +P AA + L S++ A+
Sbjct: 53 EPNLCRSVLIANTVRQIQEEMTQDGTWRTV-APQAAERAPLDRLVSTEILCRAAWGQEGA 111
Query: 116 --ASLLEDLSHIEG---------LSQAPQPLADEG----PPGRSIGGAAPSLG----ALD 156
A L D H +G +QAP+ L P + G SL L+
Sbjct: 112 HPAPGLGD-GHTQGPVSDLCPVTSAQAPRHLQSSAWEMDGPRENRGSFHKSLDQIFETLE 170
Query: 157 LLGPATGCLLDDGLEGLFEDIDTSMYD-NELWAPASEGLKPGPEDG--------PGKEEA 207
P+ +E LF D+D+ YD + + G +PGP +G PG +
Sbjct: 171 TKNPSC-------MEELFSDVDSPYYDLDTVLTGMMGGARPGPCEGLEGLAPATPGPSSS 223
Query: 208 PELDEAELDYLMDVLVGT 225
+ D ELD+++++LV T
Sbjct: 224 CKSDLGELDHVVEILVET 241
>gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sapiens]
Length = 2161
Score = 43.1 bits (100), Expect = 2e-04
Identities = 47/158 (29%), Positives = 63/158 (39%), Gaps = 11/158 (6%)
Query: 82 APAAALPPVPSP--PAAPSVADNLLASSDAALSASMASLLEDLSHIEGLSQAPQPLADEG 139
APA LPPVP P AAP D+ ASS + + +A+L + S G P P A
Sbjct: 1597 APATPLPPVPPPAVAAAPPTLDS-TASSLTSYDSEVATLTQGASAAPGDPHPPGPPAPAA 1655
Query: 140 PPGRSIGGAAPSLGALDLLGPATGCLLDDGLEGLFEDIDTSMYDNELWAPASEG---LKP 196
P AAP G G +G D ++T + L + ++EG
Sbjct: 1656 P-----APAAPQPGPDPPPGTDSGIEEVDSRSSSDHPLETISSASTLSSLSAEGGGSAGG 1710
Query: 197 GPEDGPGKEEAPELDEAELDYLMDVLVGTQALERPPGP 234
G G G PEL + + YL G + PP P
Sbjct: 1711 GGGAGAGVASGPELLDTYVAYLDGQAFGGSSTPGPPYP 1748
Score = 28.9 bits (63), Expect = 4.0
Identities = 54/185 (29%), Positives = 66/185 (35%), Gaps = 40/185 (21%)
Query: 79 ASMAPAAALPPVPSPPAAPSVA------------DNLLASSDAALSASMASLLEDLSHIE 126
AS AP PP P PAAP+ A D+ + D+ S+ LE +S
Sbjct: 1638 ASAAPGDPHPPGPPAPAAPAPAAPQPGPDPPPGTDSGIEEVDSRSSSDHP--LETISSAS 1695
Query: 127 GLSQAPQPLADEGPPGRSIGGAAPSLGALDLLGPATGCLLD------DGLEGLFEDIDTS 180
LS L+ EG G S GG GA GP LLD DG
Sbjct: 1696 TLSS----LSAEG--GGSAGGGG-GAGAGVASGPE---LLDTYVAYLDGQAFGGSSTPGP 1745
Query: 181 MYDNELWAP---------ASEGLKPGPEDGPGKEEAPELDEAELDYL-MDVLVGTQALER 230
Y +L P AS GL+PGP G P + D L+ +A
Sbjct: 1746 PYPPQLMTPSKLRGRALGASGGLRPGPSGGLRDPVTPTSPTVSVTGAGTDGLLALRACSG 1805
Query: 231 PPGPG 235
PP G
Sbjct: 1806 PPTAG 1810
>gi|4505859 pleiomorphic adenoma gene-like 2 [Homo sapiens]
Length = 496
Score = 35.0 bits (79), Expect = 0.056
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 80 SMAPAAALPPVPSPPAAPSVADN-LLASSDAALSASMASLLEDLSHIEGLSQAPQPLADE 138
S++ A P P P AA ++ D LLA S A LS ++ + D SH+ G P L
Sbjct: 371 SLSSAEPQPASPQPAAAAALLDEALLAKSPANLSEALCAANVDFSHLLGF--LPLNLPPC 428
Query: 139 GPPGRSIG 146
PPG + G
Sbjct: 429 NPPGATGG 436
>gi|148727255 microtubule associated serine/threonine kinase family
member 4 isoform a [Homo sapiens]
Length = 2434
Score = 35.0 bits (79), Expect = 0.056
Identities = 46/159 (28%), Positives = 61/159 (38%), Gaps = 29/159 (18%)
Query: 93 PPAAPSVADNLLASSDAALSASMASLLEDLSHIEGLSQAPQPLADEGP-----PGRSIGG 147
P A PS A+ + D + +H E S P+P D GP P RS+
Sbjct: 1974 PGAKPSTAEPSSSPQDPPKPVA--------AHSESSSHKPRPGPDPGPPKTKHPDRSLSS 2025
Query: 148 AAPSLGALDLLGPATGCLLDDGLEGLFEDIDTSMYDNELWAPASEGLKPGPEDGPGKEEA 207
PS+GA PAT L EG S +++ PA+ G + DG G+ E
Sbjct: 2026 QKPSVGATKGKEPATQSLGGSSREGK----GHSKSGPDVF-PATPGSQNKASDGIGQGEG 2080
Query: 208 P-----ELDEAELDYLMDVLVG---TQALERP---PGPG 235
D A LD G + LE+P P PG
Sbjct: 2081 GPSVPLHTDRAPLDAKPQPTSGGRPLEVLEKPVHLPRPG 2119
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 34.7 bits (78), Expect = 0.073
Identities = 40/129 (31%), Positives = 50/129 (38%), Gaps = 18/129 (13%)
Query: 86 ALPPVPSPPAAPSVADNLLASSDAALSASMASLLEDLSHIE-----GLSQAPQPLADEGP 140
AL P P PP + S + L A S+S S E+L + G + +P P A+
Sbjct: 606 ALAPGPPPPPSRSPSSTLSGPDLAGHSSSATSTPEELRGYDSGPEGGAAASPPPDAELAA 665
Query: 141 --PGRSIGGAAPSLGALDLLG------PATGCLLDDGLEGLFEDIDTSMYDNELWAPASE 192
P G AP L G PATG DGL ++E E PA
Sbjct: 666 CHPAAWSRGPAPPLAFRGAPGAPLPWPPATGPGSADGLCTIYE-----TEGPESATPAPG 720
Query: 193 GLKPGPEDG 201
L PGP G
Sbjct: 721 ALDPGPSPG 729
Score = 32.0 bits (71), Expect = 0.48
Identities = 36/127 (28%), Positives = 49/127 (38%), Gaps = 13/127 (10%)
Query: 37 PPAVASSSLFDLSVLKLHHSLQQSEPDLRHLVLVVNTLRRIQASMAPAAALPPV---PSP 93
PP+ A++SL L+ HS S P ++ L PA ALPP+ PSP
Sbjct: 361 PPSQATTSLGS-PTLQATHSFLPSPP--------LSPLATPPPQAPPALALPPLQAPPSP 411
Query: 94 PAAPSVADNLLASSDAALSASMASLLEDLSHIEGLSQAPQPLADEGPPGRSIGGAAPSLG 153
PA+P ++ L S A +A LL+ P + P S PS
Sbjct: 412 PASPPLSP-LATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSPPASPPVSPSATPPSQA 470
Query: 154 ALDLLGP 160
L P
Sbjct: 471 PPSLAAP 477
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 34.7 bits (78), Expect = 0.073
Identities = 40/129 (31%), Positives = 50/129 (38%), Gaps = 18/129 (13%)
Query: 86 ALPPVPSPPAAPSVADNLLASSDAALSASMASLLEDLSHIE-----GLSQAPQPLADEGP 140
AL P P PP + S + L A S+S S E+L + G + +P P A+
Sbjct: 875 ALAPGPPPPPSRSPSSTLSGPDLAGHSSSATSTPEELRGYDSGPEGGAAASPPPDAELAA 934
Query: 141 --PGRSIGGAAPSLGALDLLG------PATGCLLDDGLEGLFEDIDTSMYDNELWAPASE 192
P G AP L G PATG DGL ++E E PA
Sbjct: 935 CHPAAWSRGPAPPLAFRGAPGAPLPWPPATGPGSADGLCTIYE-----TEGPESATPAPG 989
Query: 193 GLKPGPEDG 201
L PGP G
Sbjct: 990 ALDPGPSPG 998
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 34.7 bits (78), Expect = 0.073
Identities = 40/129 (31%), Positives = 50/129 (38%), Gaps = 18/129 (13%)
Query: 86 ALPPVPSPPAAPSVADNLLASSDAALSASMASLLEDLSHIE-----GLSQAPQPLADEGP 140
AL P P PP + S + L A S+S S E+L + G + +P P A+
Sbjct: 567 ALAPGPPPPPSRSPSSTLSGPDLAGHSSSATSTPEELRGYDSGPEGGAAASPPPDAELAA 626
Query: 141 --PGRSIGGAAPSLGALDLLG------PATGCLLDDGLEGLFEDIDTSMYDNELWAPASE 192
P G AP L G PATG DGL ++E E PA
Sbjct: 627 CHPAAWSRGPAPPLAFRGAPGAPLPWPPATGPGSADGLCTIYE-----TEGPESATPAPG 681
Query: 193 GLKPGPEDG 201
L PGP G
Sbjct: 682 ALDPGPSPG 690
Score = 32.0 bits (71), Expect = 0.48
Identities = 36/127 (28%), Positives = 49/127 (38%), Gaps = 13/127 (10%)
Query: 37 PPAVASSSLFDLSVLKLHHSLQQSEPDLRHLVLVVNTLRRIQASMAPAAALPPV---PSP 93
PP+ A++SL L+ HS S P ++ L PA ALPP+ PSP
Sbjct: 322 PPSQATTSLGS-PTLQATHSFLPSPP--------LSPLATPPPQAPPALALPPLQAPPSP 372
Query: 94 PAAPSVADNLLASSDAALSASMASLLEDLSHIEGLSQAPQPLADEGPPGRSIGGAAPSLG 153
PA+P ++ L S A +A LL+ P + P S PS
Sbjct: 373 PASPPLSP-LATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSPPASPPVSPSATPPSQA 431
Query: 154 ALDLLGP 160
L P
Sbjct: 432 PPSLAAP 438
>gi|50428940 mediator complex subunit 25 [Homo sapiens]
Length = 747
Score = 34.7 bits (78), Expect = 0.073
Identities = 41/140 (29%), Positives = 50/140 (35%), Gaps = 39/140 (27%)
Query: 63 DLRHLVLVVNTLRRIQASMAPAA--ALPPVPSPPAAPS--------------------VA 100
D RH+VLV + + AP + PVP PPAAPS V
Sbjct: 216 DPRHMVLVRGLVLPVGGGSAPGPLQSKQPVPLPPAAPSGATLSAAPQQPLPPVPPQYQVP 275
Query: 101 DNLLASSDAALSA------SMASLLEDLSHIEGL-----------SQAPQPLADEGPPGR 143
NL A+ AA +A A L S I L SQAP P GPPG
Sbjct: 276 GNLSAAQVAAQNAVEAAKNQKAGLGPRFSPITPLQQAAPGVGPPFSQAPAPQLPPGPPGA 335
Query: 144 SIGGAAPSLGALDLLGPATG 163
A + + P +G
Sbjct: 336 PKPPPASQPSLVSTVAPGSG 355
Score = 28.9 bits (63), Expect = 4.0
Identities = 28/84 (33%), Positives = 34/84 (40%), Gaps = 17/84 (20%)
Query: 80 SMAPAAALPPVPSPPAAPSVADNLLASSDAALSASMASLLEDLSHIEGLSQAPQP----L 135
S APA LP P PP AP AS SL+ ++ GL+ QP +
Sbjct: 321 SQAPAPQLP--PGPPGAPKPP-----------PASQPSLVSTVAPGSGLAPTAQPGAPSM 367
Query: 136 ADEGPPGRSIGGAAPSLGALDLLG 159
A PG G + LGA L G
Sbjct: 368 AGTVAPGGVSGPSPAQLGAPALGG 391
>gi|54873602 hypothetical protein LOC220382 [Homo sapiens]
Length = 426
Score = 34.7 bits (78), Expect = 0.073
Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
Query: 75 RRIQASMAPAAALPPVPSPPAAPSVADNLLASSDAALSASMASLLEDLSHIEGLSQAPQP 134
R + A AP A P AAP + A++ + S S+A+L + L H+ G +P
Sbjct: 127 RPLAAPSAPTVAAPA--HGKAAPRREASQAAAAASLQSRSLAALFDSLRHVPG---GAEP 181
Query: 135 LADE-GPPGRSIGGAAPSLGALDLLGPA 161
E P +GGA D+ GPA
Sbjct: 182 AGGEVAAPAAGLGGAGTGGAGGDVAGPA 209
>gi|194097341 period 1 [Homo sapiens]
Length = 1290
Score = 34.3 bits (77), Expect = 0.096
Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 79 ASMAPAAALPPV-PSPPAAPSVADNLLASSDAALSASMASL-LEDLSHIEGLSQAPQPLA 136
AS +P+ +LP + PSPP P D+ L +S + + L LE+L EG + A P +
Sbjct: 950 ASHSPSPSLPALAPSPPHRP---DSPLFNSRCSSPLQLNLLQLEELPRAEGAAVAGGPGS 1006
Query: 137 DEGPPGRSIGGAAP 150
GPP S A P
Sbjct: 1007 SAGPPPPSAEAAEP 1020
Score = 28.9 bits (63), Expect = 4.0
Identities = 26/82 (31%), Positives = 33/82 (40%), Gaps = 19/82 (23%)
Query: 81 MAPAAALPPVPSPPAAPSVADNL---LASSDAALS-------ASMASLLEDLSHIEGL-- 128
+AP A P PSP AP A + + + A LS + S DL + GL
Sbjct: 750 LAPGPAPSPAPSPTVAPDPAPDAYRPVGLTKAVLSLHTQKEEQAFLSRFRDLGRLRGLDS 809
Query: 129 -SQAPQPLADEG------PPGR 143
S AP L + G PP R
Sbjct: 810 SSTAPSALGERGCHHGPAPPSR 831
>gi|156151383 zinc finger CCCH-type containing 12A [Homo sapiens]
Length = 599
Score = 34.3 bits (77), Expect = 0.096
Identities = 43/146 (29%), Positives = 62/146 (42%), Gaps = 23/146 (15%)
Query: 78 QASMAPAAALPPVPSPPAAPSVADNLLASSDAALSASMASLLEDLSHIEGL---SQAPQP 134
Q S+A + SPP APS N S ++ S+S+ + E S ++G +QA
Sbjct: 330 QRSVADELRANALLSPPRAPSKDKNGRRPSPSSQSSSLLTESEQCS-LDGKKLGAQASPG 388
Query: 135 LADEG------PPGRSI---GGAAPSLGALDLLGPATGCL---LDDGLEGLFEDIDTSMY 182
EG P GRS+ GG+ S G D L L D L+ +++ M
Sbjct: 389 SRQEGLTQTYAPSGRSLAPSGGSGSSFGPTDWLPQTLDSLPYVSQDCLDSGIGSLESQM- 447
Query: 183 DNELWAPASEGLKPGPEDGPGKEEAP 208
+ELW G++ G PG AP
Sbjct: 448 -SELW-----GVRGGGPGEPGPPRAP 467
>gi|210032509 hypothetical protein LOC100130302 [Homo sapiens]
Length = 887
Score = 34.3 bits (77), Expect = 0.096
Identities = 31/93 (33%), Positives = 43/93 (46%), Gaps = 15/93 (16%)
Query: 79 ASMAPAAALPPVPSPPAAPSVADNLLASSDAALSASMASLLEDLSHIEGLSQAPQPLADE 138
A+ A AAA P P+P AAP+VA A++ AA S S + L QA +P
Sbjct: 534 AAPALAAAAAPAPAPAAAPAVAAAPAAAASAAPSHSQKPSVP-------LIQASRPCPAA 586
Query: 139 GPPGRSIGGA--------APSLGALDLLGPATG 163
PP + I A + L A+++ GP G
Sbjct: 587 QPPTKFIKIAPAIQLRTGSTGLKAINVEGPVQG 619
>gi|206597502 NESH protein isoform 2 [Homo sapiens]
Length = 360
Score = 34.3 bits (77), Expect = 0.096
Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 10/71 (14%)
Query: 75 RRIQASMAPAAAL----PPVPSPPAAPSVADNLLASSDAALSASMASLLEDLSHIEGLSQ 130
+ I+A PA+A P +P P P V D L++ AS AS L EG+
Sbjct: 163 KSIKAPATPASATLGRPPRIPEPVHLPVVPDGRLSA------ASSASSLASAGSAEGVGG 216
Query: 131 APQPLADEGPP 141
AP P PP
Sbjct: 217 APTPKGQAAPP 227
>gi|7705981 NESH protein isoform 1 [Homo sapiens]
Length = 366
Score = 34.3 bits (77), Expect = 0.096
Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 10/71 (14%)
Query: 75 RRIQASMAPAAAL----PPVPSPPAAPSVADNLLASSDAALSASMASLLEDLSHIEGLSQ 130
+ I+A PA+A P +P P P V D L++ AS AS L EG+
Sbjct: 169 KSIKAPATPASATLGRPPRIPEPVHLPVVPDGRLSA------ASSASSLASAGSAEGVGG 222
Query: 131 APQPLADEGPP 141
AP P PP
Sbjct: 223 APTPKGQAAPP 233
>gi|54873613 agrin [Homo sapiens]
Length = 2045
Score = 33.9 bits (76), Expect = 0.13
Identities = 44/141 (31%), Positives = 57/141 (40%), Gaps = 29/141 (20%)
Query: 76 RIQASMAPAAALPPVPSPPAAPSVADNLLASSDAALSASMASLLEDLSHIE----GLSQA 131
R AS+ P + PP APS A +L+AS+ ++ S E+LS + G S
Sbjct: 1025 RTTASVPRTTVWPVLTVPPTAPSPAPSLVASAFGESGSTDGSSDEELSGDQEASGGGSGG 1084
Query: 132 PQPL-----ADEGPP-----------GRSIGGAAPSLGALDLLGPAT----GCLLDDGLE 171
+PL A GPP G G PSL A PAT G L +G+E
Sbjct: 1085 LEPLEGSSVATPGPPVERASCYNSALGCCSDGKTPSLDAEGSNCPATKVFQGVLELEGVE 1144
Query: 172 GLFEDIDTSMYDNELWAPASE 192
G Y E+ P SE
Sbjct: 1145 G-----QELFYTPEMADPKSE 1160
>gi|208022661 hypothetical protein LOC57701 [Homo sapiens]
Length = 1334
Score = 33.9 bits (76), Expect = 0.13
Identities = 43/144 (29%), Positives = 54/144 (37%), Gaps = 20/144 (13%)
Query: 88 PPVPSPPAAPSVADNLLASSDAALSASMASLLEDLSHIEGLSQAPQPLADEGPPGRSIGG 147
P P PPAAP A + L S A + +L L + L P PPG+ G
Sbjct: 164 PGGPGPPAAPPPALDAL-SPFLRKKAQILEVLRALEETDPLLLC-SPATPWRPPGQGPGS 221
Query: 148 AAPSLGALD--------------LLGPAT-GCLL--DDGLEGLFEDIDTSM-YDNELWAP 189
P G L LLGP G LL + L GL + DT + P
Sbjct: 222 PEPINGELCGPPQPEPSPWAPCLLLGPGNLGGLLHWERLLGGLGGEEDTGRPWGPSRGPP 281
Query: 190 ASEGLKPGPEDGPGKEEAPELDEA 213
++G GP PG + DEA
Sbjct: 282 QAQGTSSGPNCAPGSSSSSSSDEA 305
>gi|157364926 dystrotelin [Homo sapiens]
Length = 578
Score = 33.9 bits (76), Expect = 0.13
Identities = 25/64 (39%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 171 EGLFEDIDTSMYDNELWAPASEGLKPGPEDGPGKEEAPELDEAELDYLMDVLVGTQALER 230
EGL +DI M E+ +PA ++ E G KE EL+E EL L+ L+ LE
Sbjct: 485 EGLKQDIP-KMVPAEMSSPALAAVEK-KEAGNIKERKDELEEEELQELLSKLMDAFNLET 542
Query: 231 PPGP 234
P GP
Sbjct: 543 PSGP 546
>gi|40288203 hypothetical protein LOC219287 isoform 1 [Homo sapiens]
Length = 671
Score = 33.9 bits (76), Expect = 0.13
Identities = 35/122 (28%), Positives = 40/122 (32%), Gaps = 7/122 (5%)
Query: 82 APAAALPPVPSPPAAPSVADNLLASSDAALSASMASLLEDLSHIEGLSQAPQPLADEGPP 141
APAA P PP+ PS L SD S SL I + P D+ P
Sbjct: 342 APAAPDPASVDPPSDPSADRICLMFSDVTSLKSFDSLTGCGDIIADQEEEAGPSCDKHVP 401
Query: 142 GRSIGGAAPSLGALDLLGPATGCLLDDGLEGLFEDIDTSMYDNELWAPASEGLKPGPEDG 201
G P AL P G E D Y E W S+ + GPE
Sbjct: 402 G-------PGKPALSKKNPGVVAYQGGGEEMASPDEVDDTYLQEFWDMLSQTEEQGPEPQ 454
Query: 202 PG 203
G
Sbjct: 455 EG 456
Score = 31.6 bits (70), Expect = 0.62
Identities = 33/109 (30%), Positives = 37/109 (33%), Gaps = 24/109 (22%)
Query: 89 PVPSPPAAPSVADNLLASSDAALSASMASLLEDLSHIEGLSQAPQPLADEGPPGRSIGGA 148
P P PP A LASS A S S SLL+ GRS G
Sbjct: 137 PNPGPPRAAGPGGGSLASSSVAKSHSFFSLLK-------------------KNGRSENGK 177
Query: 149 APSLGALDLLGPATGCLLDDGLEGLFEDIDTSMYDNELWAPASEGLKPG 197
+ A G GL GLF + D A A+EG PG
Sbjct: 178 GEPVDA-----SKAGGKQKRGLRGLFSGMRWHRKDKRAKAEAAEGRAPG 221
>gi|102469037 jun D proto-oncogene [Homo sapiens]
Length = 347
Score = 33.5 bits (75), Expect = 0.16
Identities = 31/92 (33%), Positives = 38/92 (41%), Gaps = 25/92 (27%)
Query: 36 APPAVASSSLFDLSVLKLHHSLQQSEPDLRHLVLVVNTLRRIQASMAPAAALPPVP---- 91
APP A+ S+ L L S Q + A++ PAAA PP P
Sbjct: 35 APPTAAAGSMMKKDALTLSLSEQ------------------VAAALKPAAAPPPTPLRAD 76
Query: 92 -SPPAAPSVADNLLASSDAALSASMASLLEDL 122
+P AAP D LLAS D L + LE L
Sbjct: 77 GAPSAAP--PDGLLASPDLGLLKLASPELERL 106
>gi|24307909 ral guanine nucleotide dissociation stimulator isoform
1 [Homo sapiens]
Length = 914
Score = 33.5 bits (75), Expect = 0.16
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
Query: 48 LSVLKLHHSLQ-QSEPDLRHLVLVVNTLRRIQASMAPAAALPPVPSPPAAPSVADNLLAS 106
L + +L HS ++EP+ V + ++ ++ PA A PVP+P P A
Sbjct: 243 LLLAQLEHSEPIEAEPEALSPVPALKPTPELELALTPARAPSPVPAPAPEPEPAPTPAPG 302
Query: 107 SDAALSASMASLLEDLSH-IEGLSQAPQPLADEGP 140
S+ ++ + A L+ GL AP P + P
Sbjct: 303 SELEVAPAPAPELQQAPEPAVGLESAPAPALELEP 337
>gi|108796058 ral guanine nucleotide dissociation stimulator isoform
2 [Homo sapiens]
Length = 859
Score = 33.5 bits (75), Expect = 0.16
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
Query: 48 LSVLKLHHSLQ-QSEPDLRHLVLVVNTLRRIQASMAPAAALPPVPSPPAAPSVADNLLAS 106
L + +L HS ++EP+ V + ++ ++ PA A PVP+P P A
Sbjct: 188 LLLAQLEHSEPIEAEPEALSPVPALKPTPELELALTPARAPSPVPAPAPEPEPAPTPAPG 247
Query: 107 SDAALSASMASLLEDLSH-IEGLSQAPQPLADEGP 140
S+ ++ + A L+ GL AP P + P
Sbjct: 248 SELEVAPAPAPELQQAPEPAVGLESAPAPALELEP 282
>gi|29337296 melanoma antigen family D, 4B isoform 2 [Homo sapiens]
Length = 739
Score = 33.5 bits (75), Expect = 0.16
Identities = 39/144 (27%), Positives = 51/144 (35%), Gaps = 23/144 (15%)
Query: 78 QASMAPAAALPPVPSPP-AAPSVADNLLASSDAALSASMASLLEDLSHIEGLSQAPQPLA 136
Q + A A P P PP A+P + L+ S AA A S Q A
Sbjct: 148 QPTTYAAEAQGPTPEPPLASPQTSQMLVTSKMAAPEAPATSAQSQ------TGSPAQEAA 201
Query: 137 DEGPPGRSIGGAAPSLGALDLLGPATGCLLDDGLEGLFEDIDTSMYDNELW------APA 190
EGP AP +D P+T L G +F+ + + APA
Sbjct: 202 TEGPSSACAFSQAPCAREVDANRPSTAFL---GQNDVFDFTQPAGVSGMAFPRPKRPAPA 258
Query: 191 SEGLKPG-------PEDGPGKEEA 207
E G P+ GPG+E A
Sbjct: 259 QEAATEGPSAASGVPQTGPGREVA 282
>gi|29337294 melanoma antigen family D, 4B isoform 1 [Homo sapiens]
Length = 741
Score = 33.5 bits (75), Expect = 0.16
Identities = 39/144 (27%), Positives = 51/144 (35%), Gaps = 23/144 (15%)
Query: 78 QASMAPAAALPPVPSPP-AAPSVADNLLASSDAALSASMASLLEDLSHIEGLSQAPQPLA 136
Q + A A P P PP A+P + L+ S AA A S Q A
Sbjct: 148 QPTTYAAEAQGPTPEPPLASPQTSQMLVTSKMAAPEAPATSAQSQ------TGSPAQEAA 201
Query: 137 DEGPPGRSIGGAAPSLGALDLLGPATGCLLDDGLEGLFEDIDTSMYDNELW------APA 190
EGP AP +D P+T L G +F+ + + APA
Sbjct: 202 TEGPSSACAFSQAPCAREVDANRPSTAFL---GQNDVFDFTQPAGVSGMAFPRPKRPAPA 258
Query: 191 SEGLKPG-------PEDGPGKEEA 207
E G P+ GPG+E A
Sbjct: 259 QEAATEGPSAASGVPQTGPGREVA 282
>gi|29337292 melanoma antigen family D, 4B isoform 1 [Homo sapiens]
Length = 741
Score = 33.5 bits (75), Expect = 0.16
Identities = 39/144 (27%), Positives = 51/144 (35%), Gaps = 23/144 (15%)
Query: 78 QASMAPAAALPPVPSPP-AAPSVADNLLASSDAALSASMASLLEDLSHIEGLSQAPQPLA 136
Q + A A P P PP A+P + L+ S AA A S Q A
Sbjct: 148 QPTTYAAEAQGPTPEPPLASPQTSQMLVTSKMAAPEAPATSAQSQ------TGSPAQEAA 201
Query: 137 DEGPPGRSIGGAAPSLGALDLLGPATGCLLDDGLEGLFEDIDTSMYDNELW------APA 190
EGP AP +D P+T L G +F+ + + APA
Sbjct: 202 TEGPSSACAFSQAPCAREVDANRPSTAFL---GQNDVFDFTQPAGVSGMAFPRPKRPAPA 258
Query: 191 SEGLKPG-------PEDGPGKEEA 207
E G P+ GPG+E A
Sbjct: 259 QEAATEGPSAASGVPQTGPGREVA 282
>gi|7705555 iroquois homeobox 4 [Homo sapiens]
Length = 519
Score = 33.5 bits (75), Expect = 0.16
Identities = 35/118 (29%), Positives = 49/118 (41%), Gaps = 5/118 (4%)
Query: 83 PAAALPPVPSPPAAPSVADNLLASSDAALSASMASLLEDLSHIEGLSQAPQPLADEGPPG 142
PA A + + P S+A A++ AA S S + +G + P A P
Sbjct: 355 PAGASAGLEAKPRIWSLAHTATAAAAAATSLSQTEFPSCMLKRQGPAA---PAAVSSAPA 411
Query: 143 RSIGGAAPSLGALDLLGPATGCLLDDGLEGLFED-IDTSMYDNELWAPASEG-LKPGP 198
S A P GALD + L + ++G+F D I N+ WA A L PGP
Sbjct: 412 TSPSVALPHSGALDRHQDSPVTSLRNWVDGVFHDPILRHSTLNQAWATAKGALLDPGP 469
Score = 30.4 bits (67), Expect = 1.4
Identities = 29/106 (27%), Positives = 41/106 (38%), Gaps = 14/106 (13%)
Query: 119 LEDLSHIEGLSQAPQPLADEGPPGRSIGG------AAPSLGALDLLGPATGCLLDDGLEG 172
L DL + L P P + PP S+ G AAP + G L G
Sbjct: 257 LSDLDDFDPLEAEP-PACELKPPFHSLDGGLERVPAAPDGPVKEASGALRMSLAAGGGAA 315
Query: 173 LFEDIDTSMYDNELWAPASEGLKPGPEDGPGKEEAPELDEAELDYL 218
L ED++ + GPE PG E P++ EA+L ++
Sbjct: 316 LDEDLERAR-------SCLRSAAAGPEPLPGAEGGPQVCEAKLGFV 354
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.132 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,085,269
Number of Sequences: 37866
Number of extensions: 664554
Number of successful extensions: 4572
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 226
Number of HSP's that attempted gapping in prelim test: 4135
Number of HSP's gapped (non-prelim): 616
length of query: 236
length of database: 18,247,518
effective HSP length: 99
effective length of query: 137
effective length of database: 14,498,784
effective search space: 1986333408
effective search space used: 1986333408
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.