Search of human proteins with 153252068

Search of human proteins with 153252068

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|153252068 testes-specific heterogenous nuclear
ribonucleoprotein G-T [Homo sapiens]
         (392 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|153252068 testes-specific heterogenous nuclear ribonucleoprot...   825   0.0  
gi|56699409 RNA binding motif protein, X-linked [Homo sapiens]        567   e-162
gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo sa...   522   e-148
gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo sap...   522   e-148
gi|223890219 RNA binding motif protein, X-linked-like 3 [Homo sa...   393   e-109
gi|54633344 RNA binding motif protein, Y-linked, family 1, membe...   255   5e-68
gi|56090527 RNA binding motif protein, Y-linked, family 1, membe...   253   2e-67
gi|56090533 RNA binding motif protein, Y-linked, family 1, membe...   253   2e-67
gi|4826974 RNA binding motif protein, Y-linked, family 1, member...   253   3e-67
gi|34303937 RNA binding motif protein, Y-linked, family 1, membe...   251   8e-67
gi|56090529 RNA binding motif protein, Y-linked, family 1, membe...   251   8e-67
gi|239752336 PREDICTED: similar to RNA binding motif protein, X-...   202   4e-52
gi|239746849 PREDICTED: hypothetical protein XP_002343863 [Homo ...   202   4e-52
gi|239757825 PREDICTED: hypothetical protein XP_002346350 [Homo ...   118   8e-27
gi|5803137 RNA binding motif protein 3 [Homo sapiens]                 113   3e-25
gi|4502847 cold inducible RNA binding protein [Homo sapiens]          112   8e-25
gi|253970504 Ewing sarcoma breakpoint region 1 isoform 4 [Homo s...    82   8e-16
gi|253970502 Ewing sarcoma breakpoint region 1 isoform 3 [Homo s...    82   8e-16
gi|253970500 Ewing sarcoma breakpoint region 1 isoform 1 [Homo s...    82   8e-16
gi|4885225 Ewing sarcoma breakpoint region 1 isoform 2 [Homo sap...    82   8e-16
gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens]          82   8e-16
gi|4507353 TBP-associated factor 15 isoform 2 [Homo sapiens]           78   2e-14
gi|21327701 TBP-associated factor 15 isoform 1 [Homo sapiens]          78   2e-14
gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens]     75   8e-14
gi|4759098 splicing factor, arginine/serine-rich 10 [Homo sapiens]     74   3e-13
gi|156151396 heterogeneous nuclear ribonucleoprotein R isoform 3...    74   3e-13
gi|156151394 heterogeneous nuclear ribonucleoprotein R isoform 1...    74   3e-13
gi|156151392 heterogeneous nuclear ribonucleoprotein R isoform 4...    74   3e-13
gi|5031755 heterogeneous nuclear ribonucleoprotein R isoform 2 [...    74   3e-13
gi|9558733 transformer-2 alpha [Homo sapiens]                          73   4e-13

>gi|153252068 testes-specific heterogenous nuclear ribonucleoprotein
           G-T [Homo sapiens]
          Length = 392

 Score =  825 bits (2131), Expect = 0.0
 Identities = 392/392 (100%), Positives = 392/392 (100%)

Query: 1   MVEADRPGKLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 60
           MVEADRPGKLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA
Sbjct: 1   MVEADRPGKLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 60

Query: 61  DAKAAARDMNGKSLDGKAIKVAQATKPAFESSRRGPPPPRSRGRPRFLRGTRGGGGGPRR 120
           DAKAAARDMNGKSLDGKAIKVAQATKPAFESSRRGPPPPRSRGRPRFLRGTRGGGGGPRR
Sbjct: 61  DAKAAARDMNGKSLDGKAIKVAQATKPAFESSRRGPPPPRSRGRPRFLRGTRGGGGGPRR 120

Query: 121 SPSRGGPDDDGGYTADFDLRPSRAPMPMKRGPPPRRVGPPPKRAAPSGPARSSGGGMRGR 180
           SPSRGGPDDDGGYTADFDLRPSRAPMPMKRGPPPRRVGPPPKRAAPSGPARSSGGGMRGR
Sbjct: 121 SPSRGGPDDDGGYTADFDLRPSRAPMPMKRGPPPRRVGPPPKRAAPSGPARSSGGGMRGR 180

Query: 181 ALAVRGRDGYSGPPRREPLPPRRDPYLGPRDEGYSSRDGYSSRDYREPRGFAPSPGEYTH 240
           ALAVRGRDGYSGPPRREPLPPRRDPYLGPRDEGYSSRDGYSSRDYREPRGFAPSPGEYTH
Sbjct: 181 ALAVRGRDGYSGPPRREPLPPRRDPYLGPRDEGYSSRDGYSSRDYREPRGFAPSPGEYTH 240

Query: 241 RDYGHSSVRDDCPLRGYSDRDGYGGRDRDYGDHLSRGSHREPFESYGELRGAAPGRGTPP 300
           RDYGHSSVRDDCPLRGYSDRDGYGGRDRDYGDHLSRGSHREPFESYGELRGAAPGRGTPP
Sbjct: 241 RDYGHSSVRDDCPLRGYSDRDGYGGRDRDYGDHLSRGSHREPFESYGELRGAAPGRGTPP 300

Query: 301 SYGGGGRYEEYRGYSPDAYSGGRDSYSSSYGRSDRYSRGRHRVGRPDRGLSLSMERGCPP 360
           SYGGGGRYEEYRGYSPDAYSGGRDSYSSSYGRSDRYSRGRHRVGRPDRGLSLSMERGCPP
Sbjct: 301 SYGGGGRYEEYRGYSPDAYSGGRDSYSSSYGRSDRYSRGRHRVGRPDRGLSLSMERGCPP 360

Query: 361 QRDSYSRSGCRVPRGGGRLGGRLERGGGRSRY 392
           QRDSYSRSGCRVPRGGGRLGGRLERGGGRSRY
Sbjct: 361 QRDSYSRSGCRVPRGGGRLGGRLERGGGRSRY 392


>gi|56699409 RNA binding motif protein, X-linked [Homo sapiens]
          Length = 391

 Score =  567 bits (1462), Expect = e-162
 Identities = 291/396 (73%), Positives = 314/396 (79%), Gaps = 9/396 (2%)

Query: 1   MVEADRPGKLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 60
           MVEADRPGKLFIGGLN ET+EKALEA FGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA
Sbjct: 1   MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 60

Query: 61  DAKAAARDMNGKSLDGKAIKVAQATKPAFESSRRG-PPPPRSRGRPRFLRGTRGGGGGPR 119
           DAK AARDMNGKSLDGKAIKV QATKP+FES RRG PPPPRSRG PR LRG RGG GG R
Sbjct: 61  DAKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGLRGGRGGSGGTR 120

Query: 120 RSPSRGGPDDDGGYTADFDLRPSRAPMPMKRGPPPRRVGPPPKRAAPSGPARSSGGGMRG 179
             PSRGG  DDGGY+ +F++  SR P+P+KRGPPPR  GPPPKR+APSGP RSS  GM G
Sbjct: 121 GPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPPPKRSAPSGPVRSS-SGMGG 179

Query: 180 RALAVRGRDGYSGPPRREPLPPRRDPYLGPRDEGYSSRDGYSSRDY---REPRGFAPSPG 236
           RA   RGRD Y GPPRREPLP RRD YL PRD+GYS++D YSSRDY   R+ R +AP P 
Sbjct: 180 RAPVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPR 239

Query: 237 EYTHRDYGHSSVRDDCPLRGYSDRDGYGGRDRDYGDHLSRGSHREPFESYGELRGAAPGR 296
           +YT+RDYGHSS RDD P RGYSDRDGY GRDRDY DH S GS+R+ +ESYG  R A P R
Sbjct: 240 DYTYRDYGHSSSRDDYPSRGYSDRDGY-GRDRDYSDHPSGGSYRDSYESYGNSRSAPPTR 298

Query: 297 GTPPSYGGGGRYEEYRGYSPDAYSGGRDSYSSSYGRSDRYSRGRHRVGRPDRGLSLSMER 356
           G PPSYGG  RY++Y   S D Y G RDSYSSS  RSD YS GR RVGR +RGL  SMER
Sbjct: 299 GPPPSYGGSSRYDDYSS-SRDGYGGSRDSYSSS--RSDLYSSGRDRVGRQERGLPPSMER 355

Query: 357 GCPPQRDSYSRSGCRVPRGGGRLGGRLERGGGRSRY 392
           G PP RDSYS S    PRGGGR G R +RGGGRSRY
Sbjct: 356 GYPPPRDSYSSSSRGAPRGGGRGGSRSDRGGGRSRY 391


>gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo
           sapiens]
          Length = 390

 Score =  522 bits (1345), Expect = e-148
 Identities = 274/396 (69%), Positives = 299/396 (75%), Gaps = 10/396 (2%)

Query: 1   MVEADRPGKLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 60
           MVEADRPGKLFIGGLN ET+EKALE  FGKYGRIVEVLL+KDRETNKSRGFAFVTFESPA
Sbjct: 1   MVEADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPA 60

Query: 61  DAKAAARDMNGKSLDGKAIKVAQATKPAFESSRRG-PPPPRSRGRPRFLRGTRGGGGGPR 119
           DAK AARDMNGKSLDGKAIKV QATKP+FE  R G PPPPRSRG PR     RGG GG R
Sbjct: 61  DAKDAARDMNGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPRGFGAGRGGSGGTR 120

Query: 120 RSPSRGGPDDDGGYTADFDLRPSRAPMPMKRGPPPRRVGPPPKRAAPSGPARSSGGGMRG 179
             PSRGG  DDGGY+ +F++  SR P+P+KRGPPPR  GP PKR+APSG  RSS  GM G
Sbjct: 121 GPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAPSGLVRSS-SGMGG 179

Query: 180 RALAVRGRDGYSGPPRREPLPPRRDPYLGPRDEGYSSRDGYSSRDY---REPRGFAPSPG 236
           RA   RGRD Y GPPRREPLP RRD YL PRD+GYS++D YSSRDY   R+ R +AP P 
Sbjct: 180 RAPLSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPR 239

Query: 237 EYTHRDYGHSSVRDDCPLRGYSDRDGYGGRDRDYGDHLSRGSHREPFESYGELRGAAPGR 296
           +YT+RDYGHSS RDD P RGY DRDGY GRDRDY DH S GS+R+ +ESYG  R A   R
Sbjct: 240 DYTYRDYGHSSSRDDYPSRGYGDRDGY-GRDRDYSDHPSGGSYRDSYESYGNSRSAPLTR 298

Query: 297 GTPPSYGGGGRYEEYRGYSPDAYSGGRDSYSSSYGRSDRYSRGRHRVGRPDRGLSLSMER 356
           G PPSYGG  RY++Y   S D Y G RDSYSSS  RSD YS    RVGR +RGL  S+ER
Sbjct: 299 GPPPSYGGSSRYDDYSS-SRDGYGGSRDSYSSS--RSDLYS-SCDRVGRQERGLPPSVER 354

Query: 357 GCPPQRDSYSRSGCRVPRGGGRLGGRLERGGGRSRY 392
           G P  RDSYS S    PRG G  G R +RGGGRSRY
Sbjct: 355 GYPSSRDSYSSSSRGAPRGAGPGGSRSDRGGGRSRY 390


>gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo
           sapiens]
          Length = 390

 Score =  522 bits (1345), Expect = e-148
 Identities = 274/396 (69%), Positives = 299/396 (75%), Gaps = 10/396 (2%)

Query: 1   MVEADRPGKLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 60
           MVEADRPGKLFIGGLN ET+EKALE  FGKYGRIVEVLL+KDRETNKSRGFAFVTFESPA
Sbjct: 1   MVEADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPA 60

Query: 61  DAKAAARDMNGKSLDGKAIKVAQATKPAFESSRRG-PPPPRSRGRPRFLRGTRGGGGGPR 119
           DAK AARDMNGKSLDGKAIKV QATKP+FE  R G PPPPRSRG PR     RGG GG R
Sbjct: 61  DAKDAARDMNGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPRGFGAGRGGSGGTR 120

Query: 120 RSPSRGGPDDDGGYTADFDLRPSRAPMPMKRGPPPRRVGPPPKRAAPSGPARSSGGGMRG 179
             PSRGG  DDGGY+ +F++  SR P+P+KRGPPPR  GP PKR+APSG  RSS  GM G
Sbjct: 121 GPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAPSGLVRSS-SGMGG 179

Query: 180 RALAVRGRDGYSGPPRREPLPPRRDPYLGPRDEGYSSRDGYSSRDY---REPRGFAPSPG 236
           RA   RGRD Y GPPRREPLP RRD YL PRD+GYS++D YSSRDY   R+ R +AP P 
Sbjct: 180 RAPLSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPR 239

Query: 237 EYTHRDYGHSSVRDDCPLRGYSDRDGYGGRDRDYGDHLSRGSHREPFESYGELRGAAPGR 296
           +YT+RDYGHSS RDD P RGY DRDGY GRDRDY DH S GS+R+ +ESYG  R A   R
Sbjct: 240 DYTYRDYGHSSSRDDYPSRGYGDRDGY-GRDRDYSDHPSGGSYRDSYESYGNSRSAPLTR 298

Query: 297 GTPPSYGGGGRYEEYRGYSPDAYSGGRDSYSSSYGRSDRYSRGRHRVGRPDRGLSLSMER 356
           G PPSYGG  RY++Y   S D Y G RDSYSSS  RSD YS    RVGR +RGL  S+ER
Sbjct: 299 GPPPSYGGSSRYDDYSS-SRDGYGGSRDSYSSS--RSDLYS-SCDRVGRQERGLPPSVER 354

Query: 357 GCPPQRDSYSRSGCRVPRGGGRLGGRLERGGGRSRY 392
           G P  RDSYS S    PRG G  G R +RGGGRSRY
Sbjct: 355 GYPSSRDSYSSSSRGAPRGAGPGGSRSDRGGGRSRY 390


>gi|223890219 RNA binding motif protein, X-linked-like 3 [Homo
           sapiens]
          Length = 1067

 Score =  393 bits (1009), Expect = e-109
 Identities = 236/437 (54%), Positives = 265/437 (60%), Gaps = 54/437 (12%)

Query: 1   MVEADRPGKLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 60
           M+EADRP KLFIGGLNL+TDEKAL+AEFGKYG I++V LMKDR+TNKSRGFAFVTFESPA
Sbjct: 1   MMEADRPEKLFIGGLNLKTDEKALKAEFGKYGHIIKVFLMKDRKTNKSRGFAFVTFESPA 60

Query: 61  DAKAAARDMNGKSLDGKAIKVAQATKPAFESSRRGPPPPRSRGRPRFLRGTRGGGGGPRR 120
           DAKAAARDMNGK LDGKAI VAQ  KPAF+SSR  PP P S  R RF   TRGGG  P+R
Sbjct: 61  DAKAAARDMNGKYLDGKAIMVAQTIKPAFKSSRWVPPTPGSGSRSRFSHRTRGGGSSPQR 120

Query: 121 SPSRGGPDDDGGYTADFDLRPSRAPMPMKRGPPPRR-VGPPPKRAAPSGPARSSGGGMRG 179
            PS+G PDD  GY   FDL P RAPMP KRGPPPR    PP KRA PS  A S G GMRG
Sbjct: 121 PPSQGRPDDGRGYAGYFDLWPYRAPMPRKRGPPPRHWASPPHKRATPSSLAHSVGCGMRG 180

Query: 180 RALAVRGRDGYSG-PPRREPLPPRRDPY------------LGPRDEGYSSRDGYSSRDYR 226
           +A  V G+DGYSG  PRR   PP +               +  +      +DGYS    R
Sbjct: 181 KAPTVSGQDGYSGLQPRRWAGPPHKRAVPRSSLARIGGSGMPGKAPAVWGQDGYSGPRVR 240

Query: 227 E-------PRGFAPSPGEYTHRDYGHSSVRDDCPLRGYSDRDGYGGRDRDYGDHLSRGSH 279
           E       P  F P+  +Y+ R YGHSSV D  PLRG  +++GY GRD +Y DH S+GS+
Sbjct: 241 EPLPPCRDPGDFVPALRDYSRRYYGHSSVPDYRPLRGDGNQNGYRGRDHEYTDHPSKGSY 300

Query: 280 REPFESYGELRGAAPGRGTPPSYGGGGRYEEYRGYSPD---------------------- 317
           REP +SYG   GAAP  GTPPSYGGG RYEEY+G SPD                      
Sbjct: 301 REPLKSYGGPCGAAPVWGTPPSYGGGCRYEEYQGNSPDACSEGRSSEALPVVLPDAYSRD 360

Query: 318 ----AYSGGRDSYSSSYGRSDRYSRGRHRVGRPDRGLSLSMERGCPPQRDSYSRSGCRVP 373
               AYSGGR S S+ Y RSDRY  G        RG S     G    R+S S S  +  
Sbjct: 361 HSPKAYSGGRSSSSNGYSRSDRY--GEEGCYEEYRGRSPDAHSG---GRNSSSNSYGQSH 415

Query: 374 RGGGRLGGRLERGGGRS 390
             GG   GR E   GRS
Sbjct: 416 HYGGE--GRYEEYRGRS 430



 Score =  162 bits (411), Expect = 4e-40
 Identities = 109/231 (47%), Positives = 118/231 (51%), Gaps = 26/231 (11%)

Query: 171  RSSGGG----MRGRALAVRGR----DGYSGPPRREPLPPRRDPYLGPRDEGYSSRDGYSS 222
            R  GGG     RGR+     R    D +SG    E     RD +       Y   D Y  
Sbjct: 854  RYGGGGHYEEYRGRSHDTHSRGRSPDAHSGDHYTEAYSRGRDSF----SNSYGRSDHYGR 909

Query: 223  RD-YREPRGFAPSPGEYTHRDYGHSSVRDDCPLRGYSDRDGYGGRDRDYGDHLSRGSHRE 281
               Y E +G   SP  Y     G   +       G S R G GGR  +Y     RG    
Sbjct: 910  GGCYEEYQG--RSPNAYG----GGRGLNSSNNSHGRSHRYGGGGRYEEY-----RGP--S 956

Query: 282  PFESYGELRGAAPGRGTPPSYGGGGRYEEYRGYSPDAYSGGRDSYSSSYGRSDRYSRGRH 341
            P    G    +    G    YGGGG YEEY+G  PDAYSG  D  S+SYGRSDRYSRGR 
Sbjct: 957  PDAHSGGRDSSIKSYGLSDRYGGGGHYEEYQGSLPDAYSGDHDRSSNSYGRSDRYSRGRD 1016

Query: 342  RVGRPDRGLSLSMERGCPPQRDSYSRSGCRVPRGGGRLGGRLERGGGRSRY 392
            RVGRPDRGL L ME G PP  DSYSRSGCRVPRGGGR GGR ERG GRSRY
Sbjct: 1017 RVGRPDRGLPLPMETGSPPLHDSYSRSGCRVPRGGGRQGGRFERGEGRSRY 1067



 Score = 66.6 bits (161), Expect = 4e-11
 Identities = 112/401 (27%), Positives = 133/401 (33%), Gaps = 101/401 (25%)

Query: 71  GKSLDGKAIKVAQATKPAFESSRRGPPPPRSRGRPRFLRGTRGGGGGPRRSPSRGGPD-- 128
           G  + GKA  V+     +    RR   PP  R  PR      GG G P ++P+  G D  
Sbjct: 175 GCGMRGKAPTVSGQDGYSGLQPRRWAGPPHKRAVPRSSLARIGGSGMPGKAPAVWGQDGY 234

Query: 129 -------------DDG--------------GYTADFDLRPSRA----------------- 144
                        D G              G+++  D RP R                  
Sbjct: 235 SGPRVREPLPPCRDPGDFVPALRDYSRRYYGHSSVPDYRPLRGDGNQNGYRGRDHEYTDH 294

Query: 145 PMPMKRGPPPRRVGPPPKRAAPSGPARSSGGGMRGRALAVRGRDGYSGPPRREPLPP--- 201
           P       P +  G P   A   G   S GGG R         D  S     E LP    
Sbjct: 295 PSKGSYREPLKSYGGPCGAAPVWGTPPSYGGGCRYEEYQGNSPDACSEGRSSEALPVVLP 354

Query: 202 ---RRD----PYLGPRDE---GYSSRDGYSSRD-YREPRGFAPSPGEYTHRDYGHSSVRD 250
               RD     Y G R     GYS  D Y     Y E RG +P           HS  R+
Sbjct: 355 DAYSRDHSPKAYSGGRSSSSNGYSRSDRYGEEGCYEEYRGRSPD---------AHSGGRN 405

Query: 251 DCPLRGYSDRDGYGGRDRDYGDHLSR------GSHREPFESYGELRGAAPGRGTPPSY-- 302
                 Y     YGG  R Y ++  R      G       S G    A  G     S+  
Sbjct: 406 SSS-NSYGQSHHYGGEGR-YEEYRGRSHEARSGGRSTDAHSRGRSDDAYSGGHDSSSWSD 463

Query: 303 --GGGGRYEEYR---------GYSPDAYSGGRDSYSSSYGRSDRYSRGRHRVGRPDRGLS 351
             GGGGRYEEY+         G SP+AYSGG D+ S     SDRY  G H     +RG S
Sbjct: 464 CCGGGGRYEEYQGRSLDANSGGCSPEAYSGGHDNSS----WSDRYGVGGHY--EENRGHS 517

Query: 352 LSMERGCPPQRDSYSRSGCRVPRGGGRLGGRLERGGGRSRY 392
           L    G    R   + SG           G+  R GG  RY
Sbjct: 518 LDANSG---GRSPDTHSGGH--SSSSNSYGQSHRYGGEGRY 553



 Score = 66.6 bits (161), Expect = 4e-11
 Identities = 101/312 (32%), Positives = 111/312 (35%), Gaps = 105/312 (33%)

Query: 167 SGPARSSGGGMRGRALAVRGR--DGYSGPPRREPLPPRRDPYLGPRDEGYSSRDGYSSRD 224
           SG +   GGG  GR    RGR  D  SG   R P     D Y G  D    S        
Sbjct: 657 SGQSNCYGGG--GRYEEYRGRLLDANSGG--RSP-----DAYSGGHDSSSQSNRYGGGGR 707

Query: 225 YREPRGFA-------PSPGEYTHRDYGHSSVRDDCPLRGYSDRDGYGGRDRDY------- 270
           Y E RG +        SP  Y+    GH S          SD  G GGR  D        
Sbjct: 708 YEEYRGHSLDANSGGRSPDTYSR---GHDS-------SSQSDHYGGGGRSLDANSSGRLP 757

Query: 271 -----GDHLSRGSHREP----FESY-GELRGAAPGRGTPPSYGGG-------------GR 307
                G   S  SHR      +E Y G    A  G  +P +Y GG             GR
Sbjct: 758 DAYSGGHDSSSRSHRYGGGGRYEEYRGRSLDANSGGRSPNAYSGGHNSSSRNDPCRGGGR 817

Query: 308 YEEYRGYS---------PDAYSGGRDSYSSSYGRSDRYSRGRHRV---GRP----DRGLS 351
           YEE RG+S         P+AYSGGRDS S+SY RS RY  G H     GR      RG S
Sbjct: 818 YEENRGHSLDANSGGHSPNAYSGGRDSSSNSYDRSHRYGGGGHYEEYRGRSHDTHSRGRS 877

Query: 352 LSMERG----------------CPPQRDSYSRSGC------RVPR--GGGR-------LG 380
                G                   + D Y R GC      R P   GGGR         
Sbjct: 878 PDAHSGDHYTEAYSRGRDSFSNSYGRSDHYGRGGCYEEYQGRSPNAYGGGRGLNSSNNSH 937

Query: 381 GRLERGGGRSRY 392
           GR  R GG  RY
Sbjct: 938 GRSHRYGGGGRY 949



 Score = 63.9 bits (154), Expect = 2e-10
 Identities = 80/232 (34%), Positives = 94/232 (40%), Gaps = 41/232 (17%)

Query: 171 RSSGGGM----RGRALAVRGRDGYSGPPRREPLPPRRDPYLGPRDEG-YSSRDGYSSRDY 225
           R  GGG     RGR+L     D  SG   R P     + Y G  D   +S R G   R Y
Sbjct: 584 RYGGGGCYEEYRGRSL-----DANSGG--RSP-----NAYSGGHDSSSWSHRYGGGGR-Y 630

Query: 226 REPRGFAPSPGEYTHRDYGHSSVRDDCPLRGYSDRDGYGGRDRDYGDHL--SRGSHREPF 283
            E RG +            +S   D     G S+  G GGR  +Y   L  +    R P 
Sbjct: 631 EEYRGRSLDANSGGRSPDAYSGGHDSS---GQSNCYGGGGRYEEYRGRLLDANSGGRSP- 686

Query: 284 ESYGELRGAAPGRGTPPSYGGGGRYEEYRGYSPDAYSGGR--DSYS---SSYGRSDRYSR 338
           ++Y    G          YGGGGRYEEYRG+S DA SGGR  D+YS    S  +SD Y  
Sbjct: 687 DAYS---GGHDSSSQSNRYGGGGRYEEYRGHSLDANSGGRSPDTYSRGHDSSSQSDHYGG 743

Query: 339 GRHRVGRPDRGLSLSMERGCPPQRDSYSRSGCRVPRGGGRLGGRLERGGGRS 390
           G        R L  +     P        S  R  R GG  GGR E   GRS
Sbjct: 744 G-------GRSLDANSSGRLPDAYSGGHDSSSRSHRYGG--GGRYEEYRGRS 786



 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 63/199 (31%), Positives = 77/199 (38%), Gaps = 23/199 (11%)

Query: 208 GPRDEGYSSRDGYSSRDYREPRGFAPSPGEYTHRDYGHSSVRDDCPLRGYS--------- 258
           G  D+ YS   G+ S  + +  G      EY  R    +S    C    YS         
Sbjct: 446 GRSDDAYSG--GHDSSSWSDCCGGGGRYEEYQGRSLDANS--GGCSPEAYSGGHDNSSWS 501

Query: 259 DRDGYGGRDRDYGDHL--SRGSHREPFESYGELRGAAPGRGTPPSYGGGGRYEEYRGYSP 316
           DR G GG   +   H   +    R P    G    ++   G    YGG GRYE YRG S 
Sbjct: 502 DRYGVGGHYEENRGHSLDANSGGRSPDTHSGGHSSSSNSYGQSHRYGGEGRYE-YRGRSH 560

Query: 317 DAYSGG--RDSYSSSYGRSDRYSR-GRHRVGRPDRGLSLSMERG--CPPQRDSYSRSGCR 371
           DA+SGG   D+YS  +  S + +R G        RG SL    G   P        S   
Sbjct: 561 DAHSGGCSADAYSGGHDSSSQSNRYGGGGCYEEYRGRSLDANSGGRSPNAYSGGHDSSSW 620

Query: 372 VPRGGGRLGGRLERGGGRS 390
             R GG  GGR E   GRS
Sbjct: 621 SHRYGG--GGRYEEYRGRS 637


>gi|54633344 RNA binding motif protein, Y-linked, family 1, member B
           [Homo sapiens]
          Length = 496

 Score =  255 bits (651), Expect = 5e-68
 Identities = 192/486 (39%), Positives = 234/486 (48%), Gaps = 130/486 (26%)

Query: 1   MVEADRPGKLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 60
           MVEAD PGKLFIGGLN ET+EK L+A FGK+G I EVLL+KDR T+KSRGFAF+TFE+PA
Sbjct: 1   MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPA 59

Query: 61  DAKAAARDMNGKSLDGKAIKVAQATKPAFESSRRGPPPPRSRGR--PRFLRGTRGGGGGP 118
           DAK AA+DMNGKSL GKAIKV QA KP+F+S  R  PP  SR R     LR  RG  GG 
Sbjct: 60  DAKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGT 119

Query: 119 RR-SPSRGGPDDDGGYTADFDLRPSRAPMPMKRGPPPRRVGPPPKRAAPSGPARSSGGGM 177
           R   PS+ G  DDGGYT D  +  SR  +P+KRGP  R  GPPPK++APS  ARS+   M
Sbjct: 120 RGWLPSQEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSN-SWM 178

Query: 178 RGRALAVRGRDGYSGPPRR--------EPLPPRRDPY----------------------L 207
             +    + R+ Y  PPRR        + +  R D Y                       
Sbjct: 179 GSQGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGY 238

Query: 208 GPRDEGYSSRDGYSSRDY------REPRGFAPSPGEYTHRDYGHSSVRDDCPLRGYSDR- 260
             RD G+S+RD +SSR Y      RE R +AP    + +RDYGHS  RD+   RGY +R 
Sbjct: 239 AYRDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSR-RDESYSRGYRNRR 297

Query: 261 ------------DGYGGRD-----------------------------------RDYG-- 271
                        G+G RD                                   RDYG  
Sbjct: 298 SSRETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYAYRDYGHS 357

Query: 272 ---DHLSRG----------------------SHREPFESYGELRGAAPGRGTPPSYGGGG 306
              +H SRG                      S+R+  + YG   GA P RG   SYGG  
Sbjct: 358 SWDEHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSYGGS- 416

Query: 307 RYEEYRGYSPDAYSGGRDSYSSSY----GRSDRYSRGRHRVGRPDRGLSLSMERGCPPQR 362
                   +  AYS  RD Y  S+       D +   R  V R D+    S+ R  P  R
Sbjct: 417 --------TCHAYSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNPPSLGRVLPDPR 468

Query: 363 DSYSRS 368
           ++Y  S
Sbjct: 469 EAYGSS 474


>gi|56090527 RNA binding motif protein, Y-linked, family 1, member E
           [Homo sapiens]
          Length = 496

 Score =  253 bits (646), Expect = 2e-67
 Identities = 174/373 (46%), Positives = 213/373 (57%), Gaps = 35/373 (9%)

Query: 1   MVEADRPGKLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 60
           MVEAD PGKLFIGGLN ET+EK L+A FGK+G I EVLL+KDR T+KSRGFAF+TFE+PA
Sbjct: 1   MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPA 59

Query: 61  DAKAAARDMNGKSLDGKAIKVAQATKPAFESSRRGPPPPRSRGR--PRFLRGTRGGGGGP 118
           DAK AA+DMNGKSL GKAIKV QA KP+F+S  R  PP  SR R     LR  RG  GG 
Sbjct: 60  DAKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGT 119

Query: 119 RR-SPSRGGPDDDGGYTADFDLRPSRAPMPMKRGPPPRRVGPPPKRAAPSGPARSSGGGM 177
           R   PS+ G  DDGGYT D  +  SR  +P+KRGP  R  GPPPK++APS  ARS+   M
Sbjct: 120 RGWLPSQEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSN-SWM 178

Query: 178 RGRALAVRGRDGYSGPPRREPLPPRRDPYLGPRDEGYSSRDGYSSRDYREPRGFAPSPGE 237
             +    + R+ Y  PPRR  +   R+  +  R +GY++ DG +    +E R +AP    
Sbjct: 179 GSQGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDG-NHPSCQETRDYAPPSRG 237

Query: 238 YTHRDYGHSSVRDDCPLRGYSDRDGYGGRD-RDYGDHLSRGSHREPFESYGELRGAAPGR 296
           Y +RD GHS+ RD+   RGY  R+    R+ RDY    SRG     +  YG  R      
Sbjct: 238 YAYRDNGHSN-RDEHSSRGY--RNHRSSRETRDYAPP-SRG---HAYRDYGHSR------ 284

Query: 297 GTPPSYGGGGR----YEEYRGYSPDAYSGGRDSYSSSYGRSDRYSRG--RHRVGRPDRGL 350
               SY  G R      E R Y+P +   G   Y  S  R + YSRG   H   R  R  
Sbjct: 285 -RDESYSRGYRNRRSSRETREYAPPSRGHGYRDYGHS-RRHESYSRGYRNHPSSRETRDY 342

Query: 351 SLSMERGCPPQRD 363
           +       PP RD
Sbjct: 343 A-------PPHRD 348



 Score =  102 bits (253), Expect = 8e-22
 Identities = 89/258 (34%), Positives = 114/258 (44%), Gaps = 28/258 (10%)

Query: 122 PSRGGPDDDGGYTADFDLRPSRAPMPMKRGPPPRRVGPPPKRAAPSGPARSSGGGMRGRA 181
           PSRG    D G++ + D   SR     +     R   PP +  A     R  G   R  +
Sbjct: 234 PSRGYAYRDNGHS-NRDEHSSRGYRNHRSSRETRDYAPPSRGHA----YRDYGHSRRDES 288

Query: 182 LAVRGRDGYSGPPRREPLPPRRDPYLGPRDEGYSSRDGYSSRDYR------EPRGFAPSP 235
            +   R+  S    RE  PP R    G RD G+S R    SR YR      E R +AP  
Sbjct: 289 YSRGYRNRRSSRETREYAPPSRGH--GYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPH 346

Query: 236 GEYTHRDYGHSSVRDDCPLRGYSDRDGYG-GRDRDYGDHLSRGSHREPFESYGELRGAAP 294
            +Y +RDYGHSS  D+   RGYS  DGYG    RD+ +HLS  S+R+  + YG   GA P
Sbjct: 347 RDYAYRDYGHSSW-DEHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTAHGAPP 405

Query: 295 GRGTPPSYGGGGRYEEYRGYSPDAYSGGRDSYSSSY----GRSDRYSRGRHRVGRPDRGL 350
            RG   SYGG          +  AYS  RD Y  S+       D +   R  V R D+  
Sbjct: 406 ARGPRMSYGGS---------TCHAYSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRN 456

Query: 351 SLSMERGCPPQRDSYSRS 368
             S+ R  P  R++   S
Sbjct: 457 PPSLGRVLPDPREACGSS 474


>gi|56090533 RNA binding motif protein, Y-linked, family 1, member D
           [Homo sapiens]
          Length = 496

 Score =  253 bits (646), Expect = 2e-67
 Identities = 174/373 (46%), Positives = 213/373 (57%), Gaps = 35/373 (9%)

Query: 1   MVEADRPGKLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 60
           MVEAD PGKLFIGGLN ET+EK L+A FGK+G I EVLL+KDR T+KSRGFAF+TFE+PA
Sbjct: 1   MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPA 59

Query: 61  DAKAAARDMNGKSLDGKAIKVAQATKPAFESSRRGPPPPRSRGR--PRFLRGTRGGGGGP 118
           DAK AA+DMNGKSL GKAIKV QA KP+F+S  R  PP  SR R     LR  RG  GG 
Sbjct: 60  DAKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGT 119

Query: 119 RR-SPSRGGPDDDGGYTADFDLRPSRAPMPMKRGPPPRRVGPPPKRAAPSGPARSSGGGM 177
           R   PS+ G  DDGGYT D  +  SR  +P+KRGP  R  GPPPK++APS  ARS+   M
Sbjct: 120 RGWLPSQEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSN-SWM 178

Query: 178 RGRALAVRGRDGYSGPPRREPLPPRRDPYLGPRDEGYSSRDGYSSRDYREPRGFAPSPGE 237
             +    + R+ Y  PPRR  +   R+  +  R +GY++ DG +    +E R +AP    
Sbjct: 179 GSQGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDG-NHPSCQETRDYAPPSRG 237

Query: 238 YTHRDYGHSSVRDDCPLRGYSDRDGYGGRD-RDYGDHLSRGSHREPFESYGELRGAAPGR 296
           Y +RD GHS+ RD+   RGY  R+    R+ RDY    SRG     +  YG  R      
Sbjct: 238 YAYRDNGHSN-RDEHSSRGY--RNHRSSRETRDYAPP-SRG---HAYRDYGHSR------ 284

Query: 297 GTPPSYGGGGR----YEEYRGYSPDAYSGGRDSYSSSYGRSDRYSRG--RHRVGRPDRGL 350
               SY  G R      E R Y+P +   G   Y  S  R + YSRG   H   R  R  
Sbjct: 285 -RDESYSRGYRNRRSSRETREYAPPSRGHGYRDYGHS-RRHESYSRGYRNHPSSRETRDY 342

Query: 351 SLSMERGCPPQRD 363
           +       PP RD
Sbjct: 343 A-------PPHRD 348



 Score =  101 bits (252), Expect = 1e-21
 Identities = 89/258 (34%), Positives = 114/258 (44%), Gaps = 28/258 (10%)

Query: 122 PSRGGPDDDGGYTADFDLRPSRAPMPMKRGPPPRRVGPPPKRAAPSGPARSSGGGMRGRA 181
           PSRG    D G++ + D   SR     +     R   PP +  A     R  G   R  +
Sbjct: 234 PSRGYAYRDNGHS-NRDEHSSRGYRNHRSSRETRDYAPPSRGHA----YRDYGHSRRDES 288

Query: 182 LAVRGRDGYSGPPRREPLPPRRDPYLGPRDEGYSSRDGYSSRDYR------EPRGFAPSP 235
            +   R+  S    RE  PP R    G RD G+S R    SR YR      E R +AP  
Sbjct: 289 YSRGYRNRRSSRETREYAPPSRGH--GYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPH 346

Query: 236 GEYTHRDYGHSSVRDDCPLRGYSDRDGYG-GRDRDYGDHLSRGSHREPFESYGELRGAAP 294
            +Y +RDYGHSS  D+   RGYS  DGYG    RD+ +HLS  S+R+  + YG   GA P
Sbjct: 347 RDYAYRDYGHSSW-DEHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAPP 405

Query: 295 GRGTPPSYGGGGRYEEYRGYSPDAYSGGRDSYSSSY----GRSDRYSRGRHRVGRPDRGL 350
            RG   SYGG          +  AYS  RD Y  S+       D +   R  V R D+  
Sbjct: 406 ARGPRMSYGGS---------TCHAYSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRN 456

Query: 351 SLSMERGCPPQRDSYSRS 368
             S+ R  P  R++   S
Sbjct: 457 PPSLGRVLPDPREACGSS 474


>gi|4826974 RNA binding motif protein, Y-linked, family 1, member A1
           [Homo sapiens]
          Length = 496

 Score =  253 bits (645), Expect = 3e-67
 Identities = 174/373 (46%), Positives = 212/373 (56%), Gaps = 35/373 (9%)

Query: 1   MVEADRPGKLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 60
           MVEAD PGKLFIGGLN ET+EK L+A FGK+G I EVLL+KDR T+KSRGFAF+TFE+PA
Sbjct: 1   MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPA 59

Query: 61  DAKAAARDMNGKSLDGKAIKVAQATKPAFESSRRGPPPPRSRGR--PRFLRGTRGGGGGP 118
           DAK AA+DMNGKSL GKAIKV QA KP+F+S  R  PP  SR R     LR  RG  GG 
Sbjct: 60  DAKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGT 119

Query: 119 RR-SPSRGGPDDDGGYTADFDLRPSRAPMPMKRGPPPRRVGPPPKRAAPSGPARSSGGGM 177
           R   PS  G  DDGGYT D  +  SR  +P+KRGP  R  GPPPK++APS  ARS+   M
Sbjct: 120 RGWLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSN-SWM 178

Query: 178 RGRALAVRGRDGYSGPPRREPLPPRRDPYLGPRDEGYSSRDGYSSRDYREPRGFAPSPGE 237
             +    + R+ Y  PPRR  +   R+  +  R +GY++ DG +    +E R +AP    
Sbjct: 179 GSQGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDG-NHPSCQETRDYAPPSRG 237

Query: 238 YTHRDYGHSSVRDDCPLRGYSDRDGYGGRD-RDYGDHLSRGSHREPFESYGELRGAAPGR 296
           Y +RD GHS+ RD+   RGY  R+    R+ RDY    SRG     +  YG  R      
Sbjct: 238 YAYRDNGHSN-RDEHSSRGY--RNHRSSRETRDYAPP-SRG---HAYRDYGHSR------ 284

Query: 297 GTPPSYGGGGR----YEEYRGYSPDAYSGGRDSYSSSYGRSDRYSRG--RHRVGRPDRGL 350
               SY  G R      E R Y+P +   G   Y  S  R + YSRG   H   R  R  
Sbjct: 285 -RDESYSRGYRNRRSSRETREYAPPSRGHGYRDYGHS-RRHESYSRGYRNHPSSRETRDY 342

Query: 351 SLSMERGCPPQRD 363
           +       PP RD
Sbjct: 343 A-------PPHRD 348



 Score =  101 bits (252), Expect = 1e-21
 Identities = 89/258 (34%), Positives = 114/258 (44%), Gaps = 28/258 (10%)

Query: 122 PSRGGPDDDGGYTADFDLRPSRAPMPMKRGPPPRRVGPPPKRAAPSGPARSSGGGMRGRA 181
           PSRG    D G++ + D   SR     +     R   PP +  A     R  G   R  +
Sbjct: 234 PSRGYAYRDNGHS-NRDEHSSRGYRNHRSSRETRDYAPPSRGHA----YRDYGHSRRDES 288

Query: 182 LAVRGRDGYSGPPRREPLPPRRDPYLGPRDEGYSSRDGYSSRDYR------EPRGFAPSP 235
            +   R+  S    RE  PP R    G RD G+S R    SR YR      E R +AP  
Sbjct: 289 YSRGYRNRRSSRETREYAPPSRGH--GYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPH 346

Query: 236 GEYTHRDYGHSSVRDDCPLRGYSDRDGYG-GRDRDYGDHLSRGSHREPFESYGELRGAAP 294
            +Y +RDYGHSS  D+   RGYS  DGYG    RD+ +HLS  S+R+  + YG   GA P
Sbjct: 347 RDYAYRDYGHSSW-DEHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAPP 405

Query: 295 GRGTPPSYGGGGRYEEYRGYSPDAYSGGRDSYSSSY----GRSDRYSRGRHRVGRPDRGL 350
            RG   SYGG          +  AYS  RD Y  S+       D +   R  V R D+  
Sbjct: 406 ARGPRMSYGGS---------TCHAYSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRN 456

Query: 351 SLSMERGCPPQRDSYSRS 368
             S+ R  P  R++   S
Sbjct: 457 PPSLGRVLPDPREACGSS 474


>gi|34303937 RNA binding motif protein, Y-linked, family 1, member F
           [Homo sapiens]
          Length = 496

 Score =  251 bits (641), Expect = 8e-67
 Identities = 173/373 (46%), Positives = 211/373 (56%), Gaps = 35/373 (9%)

Query: 1   MVEADRPGKLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 60
           MVEAD PGKLFIGGLN ET+EK L+A FGK+G I EVLL+KDR T+KSRGFAF+TFE+PA
Sbjct: 1   MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPA 59

Query: 61  DAKAAARDMNGKSLDGKAIKVAQATKPAFESSRRGPPPPRSRGR--PRFLRGTRGGGGGP 118
           DAK AA+DMNG SL GKAIKV QA KP+F+S  R  PP  SR R     LR  RG  GG 
Sbjct: 60  DAKNAAKDMNGTSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSSGGT 119

Query: 119 RR-SPSRGGPDDDGGYTADFDLRPSRAPMPMKRGPPPRRVGPPPKRAAPSGPARSSGGGM 177
           R   PS  G  DDGGYT D  +  SR  +P+KRGP  R  GPPPK++APS  ARS+   M
Sbjct: 120 RGWLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSN-SWM 178

Query: 178 RGRALAVRGRDGYSGPPRREPLPPRRDPYLGPRDEGYSSRDGYSSRDYREPRGFAPSPGE 237
             +    + R+ Y  PPRR  +   R+  +  R +GY++ DG +    +E R +AP    
Sbjct: 179 GSQGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDG-NHPSCQETRDYAPPSRG 237

Query: 238 YTHRDYGHSSVRDDCPLRGYSDRDGYGGRD-RDYGDHLSRGSHREPFESYGELRGAAPGR 296
           Y +RD GHS+ RD+   RGY  R+    R+ RDY    SRG     +  YG  R      
Sbjct: 238 YAYRDNGHSN-RDEHSSRGY--RNHRSSRETRDYAPP-SRG---HAYRDYGHSR------ 284

Query: 297 GTPPSYGGGGR----YEEYRGYSPDAYSGGRDSYSSSYGRSDRYSRG--RHRVGRPDRGL 350
               SY  G R      E R Y+P +   G   Y  S  R + YSRG   H   R  R  
Sbjct: 285 -RDESYSRGYRNHRSSRETREYAPPSRGHGYRDYGHS-RRHESYSRGYRNHPSSRETRDY 342

Query: 351 SLSMERGCPPQRD 363
           +       PP RD
Sbjct: 343 A-------PPHRD 348



 Score =  105 bits (261), Expect = 9e-23
 Identities = 90/258 (34%), Positives = 115/258 (44%), Gaps = 28/258 (10%)

Query: 122 PSRGGPDDDGGYTADFDLRPSRAPMPMKRGPPPRRVGPPPKRAAPSGPARSSGGGMRGRA 181
           PSRG    D G++ + D   SR     +     R   PP +  A     R  G   R  +
Sbjct: 234 PSRGYAYRDNGHS-NRDEHSSRGYRNHRSSRETRDYAPPSRGHA----YRDYGHSRRDES 288

Query: 182 LAVRGRDGYSGPPRREPLPPRRDPYLGPRDEGYSSRDGYSSRDYR------EPRGFAPSP 235
            +   R+  S    RE  PP R    G RD G+S R    SR YR      E R +AP  
Sbjct: 289 YSRGYRNHRSSRETREYAPPSRGH--GYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPH 346

Query: 236 GEYTHRDYGHSSVRDDCPLRGYSDRDGYG-GRDRDYGDHLSRGSHREPFESYGELRGAAP 294
            +Y +RDYGHSS  D+   RGYS  DGYG    RD+ +HLS  S+R+  + YG   GA P
Sbjct: 347 RDYAYRDYGHSSW-DEHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAPP 405

Query: 295 GRGTPPSYGGGGRYEEYRGYSPDAYSGGRDSYSSSY----GRSDRYSRGRHRVGRPDRGL 350
            RG   SYGG          +  AYS  RD Y  S+       D +   R  V R D+  
Sbjct: 406 ARGPRMSYGGS---------TCHAYSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRN 456

Query: 351 SLSMERGCPPQRDSYSRS 368
             S+ R  P  R++Y  S
Sbjct: 457 PPSLGRVLPDPREAYGSS 474


>gi|56090529 RNA binding motif protein, Y-linked, family 1, member J
           [Homo sapiens]
          Length = 496

 Score =  251 bits (641), Expect = 8e-67
 Identities = 173/373 (46%), Positives = 211/373 (56%), Gaps = 35/373 (9%)

Query: 1   MVEADRPGKLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 60
           MVEAD PGKLFIGGLN ET+EK L+A FGK+G I EVLL+KDR T+KSRGFAF+TFE+PA
Sbjct: 1   MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPA 59

Query: 61  DAKAAARDMNGKSLDGKAIKVAQATKPAFESSRRGPPPPRSRGR--PRFLRGTRGGGGGP 118
           DAK AA+DMNG SL GKAIKV QA KP+F+S  R  PP  SR R     LR  RG  GG 
Sbjct: 60  DAKNAAKDMNGTSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSSGGT 119

Query: 119 RR-SPSRGGPDDDGGYTADFDLRPSRAPMPMKRGPPPRRVGPPPKRAAPSGPARSSGGGM 177
           R   PS  G  DDGGYT D  +  SR  +P+KRGP  R  GPPPK++APS  ARS+   M
Sbjct: 120 RGWLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSN-SWM 178

Query: 178 RGRALAVRGRDGYSGPPRREPLPPRRDPYLGPRDEGYSSRDGYSSRDYREPRGFAPSPGE 237
             +    + R+ Y  PPRR  +   R+  +  R +GY++ DG +    +E R +AP    
Sbjct: 179 GSQGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDG-NHPSCQETRDYAPPSRG 237

Query: 238 YTHRDYGHSSVRDDCPLRGYSDRDGYGGRD-RDYGDHLSRGSHREPFESYGELRGAAPGR 296
           Y +RD GHS+ RD+   RGY  R+    R+ RDY    SRG     +  YG  R      
Sbjct: 238 YAYRDNGHSN-RDEHSSRGY--RNHRSSRETRDYAPP-SRG---HAYRDYGHSR------ 284

Query: 297 GTPPSYGGGGR----YEEYRGYSPDAYSGGRDSYSSSYGRSDRYSRG--RHRVGRPDRGL 350
               SY  G R      E R Y+P +   G   Y  S  R + YSRG   H   R  R  
Sbjct: 285 -RDESYSRGYRNHRSSRETREYAPPSRGHGYRDYGHS-RRHESYSRGYRNHPSSRETRDY 342

Query: 351 SLSMERGCPPQRD 363
           +       PP RD
Sbjct: 343 A-------PPHRD 348



 Score =  105 bits (261), Expect = 9e-23
 Identities = 90/258 (34%), Positives = 115/258 (44%), Gaps = 28/258 (10%)

Query: 122 PSRGGPDDDGGYTADFDLRPSRAPMPMKRGPPPRRVGPPPKRAAPSGPARSSGGGMRGRA 181
           PSRG    D G++ + D   SR     +     R   PP +  A     R  G   R  +
Sbjct: 234 PSRGYAYRDNGHS-NRDEHSSRGYRNHRSSRETRDYAPPSRGHA----YRDYGHSRRDES 288

Query: 182 LAVRGRDGYSGPPRREPLPPRRDPYLGPRDEGYSSRDGYSSRDYR------EPRGFAPSP 235
            +   R+  S    RE  PP R    G RD G+S R    SR YR      E R +AP  
Sbjct: 289 YSRGYRNHRSSRETREYAPPSRGH--GYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPH 346

Query: 236 GEYTHRDYGHSSVRDDCPLRGYSDRDGYG-GRDRDYGDHLSRGSHREPFESYGELRGAAP 294
            +Y +RDYGHSS  D+   RGYS  DGYG    RD+ +HLS  S+R+  + YG   GA P
Sbjct: 347 RDYAYRDYGHSSW-DEHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAPP 405

Query: 295 GRGTPPSYGGGGRYEEYRGYSPDAYSGGRDSYSSSY----GRSDRYSRGRHRVGRPDRGL 350
            RG   SYGG          +  AYS  RD Y  S+       D +   R  V R D+  
Sbjct: 406 ARGPRMSYGGS---------TCHAYSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRN 456

Query: 351 SLSMERGCPPQRDSYSRS 368
             S+ R  P  R++Y  S
Sbjct: 457 PPSLGRVLPDPREAYGSS 474


>gi|239752336 PREDICTED: similar to RNA binding motif protein,
           X-linked [Homo sapiens]
          Length = 138

 Score =  202 bits (514), Expect = 4e-52
 Identities = 105/131 (80%), Positives = 110/131 (83%), Gaps = 1/131 (0%)

Query: 1   MVEADRPGKLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 60
           M EADR GK FIGGLN ET++KALEA FGKYG+IVEV LMKD ETNKSRGFAF+TFE PA
Sbjct: 1   MGEADRLGKFFIGGLNTETNKKALEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPA 60

Query: 61  DAKAAARDMNGKSLDGKAIKVAQATKPAFESSRRG-PPPPRSRGRPRFLRGTRGGGGGPR 119
           DAK AARDMNGKSLDGKAIKV QATKP+FES RRG PPPPRSRG PR LRG RGG GG R
Sbjct: 61  DAKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRVLRGGRGGSGGTR 120

Query: 120 RSPSRGGPDDD 130
             PSRGG  DD
Sbjct: 121 EPPSRGGHMDD 131


>gi|239746849 PREDICTED: hypothetical protein XP_002343863 [Homo
           sapiens]
          Length = 138

 Score =  202 bits (514), Expect = 4e-52
 Identities = 105/131 (80%), Positives = 110/131 (83%), Gaps = 1/131 (0%)

Query: 1   MVEADRPGKLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 60
           M EADR GK FIGGLN ET++KALEA FGKYG+IVEV LMKD ETNKSRGFAF+TFE PA
Sbjct: 1   MGEADRLGKFFIGGLNTETNKKALEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPA 60

Query: 61  DAKAAARDMNGKSLDGKAIKVAQATKPAFESSRRG-PPPPRSRGRPRFLRGTRGGGGGPR 119
           DAK AARDMNGKSLDGKAIKV QATKP+FES RRG PPPPRSRG PR LRG RGG GG R
Sbjct: 61  DAKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRVLRGGRGGSGGTR 120

Query: 120 RSPSRGGPDDD 130
             PSRGG  DD
Sbjct: 121 EPPSRGGHMDD 131


>gi|239757825 PREDICTED: hypothetical protein XP_002346350 [Homo
           sapiens]
          Length = 196

 Score =  118 bits (296), Expect = 8e-27
 Identities = 62/94 (65%), Positives = 67/94 (71%), Gaps = 3/94 (3%)

Query: 299 PPSYGGGGRYEEYRGYSPDAYSGGRDSYSSSYGRSDRYSRGRHRVGRPDRGLSLSMERGC 358
           PPSYGG  RY++Y   S D Y G RDSYSSS  RSD YS GR +VGR +RGL  SMERG 
Sbjct: 106 PPSYGGSSRYDDYSS-SRDGYGGSRDSYSSS--RSDLYSSGRDQVGRQERGLPPSMERGY 162

Query: 359 PPQRDSYSRSGCRVPRGGGRLGGRLERGGGRSRY 392
           PP RDSYS S    PRGGGR G R +RGGGRSRY
Sbjct: 163 PPPRDSYSSSSRGTPRGGGRGGSRSDRGGGRSRY 196



 Score = 33.9 bits (76), Expect = 0.26
 Identities = 33/101 (32%), Positives = 38/101 (37%), Gaps = 7/101 (6%)

Query: 87  PAFESSRRGPPPPRSRGRPRF--LRGTRGGGGGPRRSPSRGGPDDDGGYTADFDLRPSRA 144
           P  ESS     PP   G  R+     +R G GG R S S    D           +    
Sbjct: 95  PLVESSTYTRAPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDQVGRQERGL 154

Query: 145 PMPMKRG-PPPRRVGPPPKRAAPS----GPARSSGGGMRGR 180
           P  M+RG PPPR       R  P     G +RS  GG R R
Sbjct: 155 PPSMERGYPPPRDSYSSSSRGTPRGGGRGGSRSDRGGGRSR 195



 Score = 33.5 bits (75), Expect = 0.34
 Identities = 36/98 (36%), Positives = 40/98 (40%), Gaps = 12/98 (12%)

Query: 185 RGRDGYSGPPRREPLPPRRDPYLGPRDEGYSSR-DGYSS-RDY--REPRGFAPSPGEYTH 240
           R    Y G  R +     RD Y G RD   SSR D YSS RD   R+ RG  PS      
Sbjct: 104 RAPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDQVGRQERGLPPS------ 157

Query: 241 RDYGHSSVRD--DCPLRGYSDRDGYGGRDRDYGDHLSR 276
            + G+   RD      RG     G GG   D G   SR
Sbjct: 158 MERGYPPPRDSYSSSSRGTPRGGGRGGSRSDRGGGRSR 195


>gi|5803137 RNA binding motif protein 3 [Homo sapiens]
          Length = 157

 Score =  113 bits (282), Expect = 3e-25
 Identities = 66/137 (48%), Positives = 79/137 (57%), Gaps = 23/137 (16%)

Query: 8   GKLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKAAAR 67
           GKLF+GGLN  TDE+ALE  F  +G I EV+++KDRET +SRGF F+TF +P  A  A R
Sbjct: 6   GKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMR 65

Query: 68  DMNGKSLDGKAIKVAQATKPAFESSRRGPPPPRSRGRPRFLRGTRGGGGGPR---RSPSR 124
            MNG+SLDG+ I+V  A K A                    RGTRGGG G     RS SR
Sbjct: 66  AMNGESLDGRQIRVDHAGKSA--------------------RGTRGGGFGAHGRGRSYSR 105

Query: 125 GGPDDDGGYTADFDLRP 141
           GG D   G    +D RP
Sbjct: 106 GGGDQGYGSGRYYDSRP 122



 Score = 36.6 bits (83), Expect = 0.040
 Identities = 35/121 (28%), Positives = 51/121 (42%), Gaps = 10/121 (8%)

Query: 223 RDYREPRGFAPSPGEYTHRDYGHSSVRDDCPLRGYSDRDGYGGRDR-DYGDHLSRGSHRE 281
           R+ +  RGF    G  T  +  H+SV     +R  +     G + R D+    +RG+   
Sbjct: 41  RETQRSRGF----GFITFTNPEHASVA----MRAMNGESLDGRQIRVDHAGKSARGTRGG 92

Query: 282 PFESYGELRGAAPGRGTPPSYGGGGRYEEYRGYSPDAYSGGRDSYSSSYGRSDRYSRGRH 341
            F ++G  R  + G G    YG G  Y+   G     Y   RD    + G  DRYS G +
Sbjct: 93  GFGAHGRGRSYSRGGGDQ-GYGSGRYYDSRPGGYGYGYGRSRDYNGRNQGGYDRYSGGNY 151

Query: 342 R 342
           R
Sbjct: 152 R 152


>gi|4502847 cold inducible RNA binding protein [Homo sapiens]
          Length = 172

 Score =  112 bits (279), Expect = 8e-25
 Identities = 73/153 (47%), Positives = 90/153 (58%), Gaps = 20/153 (13%)

Query: 4   ADRPGKLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 63
           A   GKLF+GGL+ +T+E++LE  F KYG+I EV+++KDRET +SRGF FVTFE+  DAK
Sbjct: 2   ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61

Query: 64  AAARDMNGKSLDGKAIKVAQATKPAFESSR--RGPPPPRSRGRPRFLRGTRGGGGGPRRS 121
            A   MNGKS+DG+ I+V QA K +   SR  RG     S G   F RG RG G    R 
Sbjct: 62  DAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRG----GSAGGRGFFRGGRGRG----RG 113

Query: 122 PSRGGPD----------DDGGYTADFDLRPSRA 144
            SRGG D            GGY    D   SR+
Sbjct: 114 FSRGGGDRGYGGNRFESRSGGYGGSRDYYSSRS 146



 Score = 30.0 bits (66), Expect = 3.8
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 8/61 (13%)

Query: 229 RGFAPSPGEYTHRDYGHSSVRDDCPLRGYS-DRDGYGGRDRD--YGDHLSRGSHREPFES 285
           RGF+   G     D G+   R +    GY   RD Y  R +   Y D  S GS+R+ ++S
Sbjct: 112 RGFSRGGG-----DRGYGGNRFESRSGGYGGSRDYYSSRSQSGGYSDRSSGGSYRDSYDS 166

Query: 286 Y 286
           Y
Sbjct: 167 Y 167


>gi|253970504 Ewing sarcoma breakpoint region 1 isoform 4 [Homo
           sapiens]
          Length = 600

 Score = 82.0 bits (201), Expect = 8e-16
 Identities = 96/316 (30%), Positives = 117/316 (37%), Gaps = 73/316 (23%)

Query: 42  DRETNKSRGFAFVTFESPADAKAAARDMNGKSLDGKAIKVAQA-TKPAFESSRRGPPPPR 100
           D+ET K +G A V++E P  AKAA    +GK   G  +KV+ A  KP   S R G PP  
Sbjct: 347 DKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPPMNSMRGGLPPRE 406

Query: 101 SRGRPRFLRGTRGGGGGP----RRSPSRGGPDDDGGYTADFDLRPSRAPMPMKRGPPPRR 156
            RG P  LRG  GG GGP     R   RGG  D GG+                   PPR 
Sbjct: 407 GRGMPPPLRGGPGGPGGPGGPMGRMGGRGG--DRGGF-------------------PPR- 444

Query: 157 VGPPPKRAAPSGPARSSGGGMRGRALAVRGRDGYSGPPRREPLPPRRDPYLGPRDEGYSS 216
            GP   R  PSG     GG ++ RA                     + P  G  ++ ++ 
Sbjct: 445 -GPRGSRGNPSG-----GGNVQHRA------------------GDWQCPNPGCGNQNFAW 480

Query: 217 RDGYSSRDYREPRGFAPSPGEYTHRDYGHSSVRDDCPLRGYSDRDGYGGRDRDYGDHLSR 276
           R   +     +P GF P P                 P  G   R G GG     G  + R
Sbjct: 481 RTECNQCKAPKPEGFLPPPFP---------------PPGGDRGRGGPGGMRGGRGGLMDR 525

Query: 277 GSHREPFES--YGELRGAAPGRGTPPSYGGGGRYEEYRGYSPDAYS--GGRDSYSSSYGR 332
           G     F     G+  G   GRG      GGGR     G         GGR       G+
Sbjct: 526 GGPGGMFRGGRGGDRGGFRGGRGMDRGGFGGGRRGGPGGPPGPLMEQMGGRRGGRGGPGK 585

Query: 333 SDRYSRGRHRVGRPDR 348
            D   +G HR  R DR
Sbjct: 586 MD---KGEHRQERRDR 598



 Score = 29.6 bits (65), Expect = 4.9
 Identities = 34/184 (18%), Positives = 61/184 (33%), Gaps = 32/184 (17%)

Query: 215 SSRDGYSSRDYREPRGFAPSPGEYTHRDYG---------HSSVRDDCPLRGYSDRDGYGG 265
           +++ GYS+   +  +G+A +   Y  + YG         ++  +        +    YG 
Sbjct: 13  AAQQGYSAYTAQPTQGYAQTTQAYGQQSYGTYGQPTDVSYTQAQTTATYGQTAYATSYGQ 72

Query: 266 RDRDYGDHLSRGSHREPFESYG---------------ELRGAAPGRGTPPSYGGGGRY-- 308
               Y    +  ++ +P + YG                   A    GT P+Y   G+   
Sbjct: 73  PPTGYTTPTAPQAYSQPVQGYGTGAYDTTTATVTTTQASYAAQSAYGTQPAYPAYGQQPA 132

Query: 309 ----EEYRGYSPDAYSGGRDSYSSSYGRSDRYSRGRHRVGRPDRGLSLSMERGCPPQRDS 364
                 Y    P +Y     S  ++YG+   Y  G+                  PPQ  S
Sbjct: 133 ATAPTSYSSTQPTSYDQSSYSQQNTYGQPSSY--GQQSSYGQQSSYGQQPPTSYPPQTGS 190

Query: 365 YSRS 368
           YS++
Sbjct: 191 YSQA 194



 Score = 29.3 bits (64), Expect = 6.4
 Identities = 25/68 (36%), Positives = 28/68 (41%), Gaps = 15/68 (22%)

Query: 90  ESSRRGPPPPRSRGRPRFLRG--TRGGGGGPRRSPSR----------GGPDDDGGYTADF 137
           E+     P  R RGR  F RG  +RGG GG R               GGP D+G    D 
Sbjct: 234 ENRSMSGPDNRGRGRGGFDRGGMSRGGRGGGRGGMGSAGERGGFNKPGGPMDEG---PDL 290

Query: 138 DLRPSRAP 145
           DL P   P
Sbjct: 291 DLGPPVDP 298


>gi|253970502 Ewing sarcoma breakpoint region 1 isoform 3 [Homo
           sapiens]
          Length = 655

 Score = 82.0 bits (201), Expect = 8e-16
 Identities = 96/316 (30%), Positives = 117/316 (37%), Gaps = 73/316 (23%)

Query: 42  DRETNKSRGFAFVTFESPADAKAAARDMNGKSLDGKAIKVAQA-TKPAFESSRRGPPPPR 100
           D+ET K +G A V++E P  AKAA    +GK   G  +KV+ A  KP   S R G PP  
Sbjct: 402 DKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPPMNSMRGGLPPRE 461

Query: 101 SRGRPRFLRGTRGGGGGP----RRSPSRGGPDDDGGYTADFDLRPSRAPMPMKRGPPPRR 156
            RG P  LRG  GG GGP     R   RGG  D GG+                   PPR 
Sbjct: 462 GRGMPPPLRGGPGGPGGPGGPMGRMGGRGG--DRGGF-------------------PPR- 499

Query: 157 VGPPPKRAAPSGPARSSGGGMRGRALAVRGRDGYSGPPRREPLPPRRDPYLGPRDEGYSS 216
            GP   R  PSG     GG ++ RA                     + P  G  ++ ++ 
Sbjct: 500 -GPRGSRGNPSG-----GGNVQHRA------------------GDWQCPNPGCGNQNFAW 535

Query: 217 RDGYSSRDYREPRGFAPSPGEYTHRDYGHSSVRDDCPLRGYSDRDGYGGRDRDYGDHLSR 276
           R   +     +P GF P P                 P  G   R G GG     G  + R
Sbjct: 536 RTECNQCKAPKPEGFLPPPFP---------------PPGGDRGRGGPGGMRGGRGGLMDR 580

Query: 277 GSHREPFES--YGELRGAAPGRGTPPSYGGGGRYEEYRGYSPDAYS--GGRDSYSSSYGR 332
           G     F     G+  G   GRG      GGGR     G         GGR       G+
Sbjct: 581 GGPGGMFRGGRGGDRGGFRGGRGMDRGGFGGGRRGGPGGPPGPLMEQMGGRRGGRGGPGK 640

Query: 333 SDRYSRGRHRVGRPDR 348
            D   +G HR  R DR
Sbjct: 641 MD---KGEHRQERRDR 653



 Score = 30.4 bits (67), Expect = 2.9
 Identities = 24/64 (37%), Positives = 27/64 (42%), Gaps = 8/64 (12%)

Query: 90  ESSRRGPPPPRSRGRPRF-----LRGTRGGGGGPRRSPSRGGPDDDGG---YTADFDLRP 141
           E+     P  R RGR  F      RG RGGG G   +  RGG +  GG      D DL P
Sbjct: 290 ENRSMSGPDNRGRGRGGFDRGGMSRGGRGGGRGGMGAGERGGFNKPGGPMDEGPDLDLGP 349

Query: 142 SRAP 145
              P
Sbjct: 350 PVDP 353


>gi|253970500 Ewing sarcoma breakpoint region 1 isoform 1 [Homo
           sapiens]
          Length = 661

 Score = 82.0 bits (201), Expect = 8e-16
 Identities = 96/316 (30%), Positives = 117/316 (37%), Gaps = 73/316 (23%)

Query: 42  DRETNKSRGFAFVTFESPADAKAAARDMNGKSLDGKAIKVAQA-TKPAFESSRRGPPPPR 100
           D+ET K +G A V++E P  AKAA    +GK   G  +KV+ A  KP   S R G PP  
Sbjct: 408 DKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPPMNSMRGGLPPRE 467

Query: 101 SRGRPRFLRGTRGGGGGP----RRSPSRGGPDDDGGYTADFDLRPSRAPMPMKRGPPPRR 156
            RG P  LRG  GG GGP     R   RGG  D GG+                   PPR 
Sbjct: 468 GRGMPPPLRGGPGGPGGPGGPMGRMGGRGG--DRGGF-------------------PPR- 505

Query: 157 VGPPPKRAAPSGPARSSGGGMRGRALAVRGRDGYSGPPRREPLPPRRDPYLGPRDEGYSS 216
            GP   R  PSG     GG ++ RA                     + P  G  ++ ++ 
Sbjct: 506 -GPRGSRGNPSG-----GGNVQHRA------------------GDWQCPNPGCGNQNFAW 541

Query: 217 RDGYSSRDYREPRGFAPSPGEYTHRDYGHSSVRDDCPLRGYSDRDGYGGRDRDYGDHLSR 276
           R   +     +P GF P P                 P  G   R G GG     G  + R
Sbjct: 542 RTECNQCKAPKPEGFLPPPFP---------------PPGGDRGRGGPGGMRGGRGGLMDR 586

Query: 277 GSHREPFES--YGELRGAAPGRGTPPSYGGGGRYEEYRGYSPDAYS--GGRDSYSSSYGR 332
           G     F     G+  G   GRG      GGGR     G         GGR       G+
Sbjct: 587 GGPGGMFRGGRGGDRGGFRGGRGMDRGGFGGGRRGGPGGPPGPLMEQMGGRRGGRGGPGK 646

Query: 333 SDRYSRGRHRVGRPDR 348
            D   +G HR  R DR
Sbjct: 647 MD---KGEHRQERRDR 659



 Score = 30.4 bits (67), Expect = 2.9
 Identities = 24/64 (37%), Positives = 27/64 (42%), Gaps = 8/64 (12%)

Query: 90  ESSRRGPPPPRSRGRPRF-----LRGTRGGGGGPRRSPSRGGPDDDGG---YTADFDLRP 141
           E+     P  R RGR  F      RG RGGG G   +  RGG +  GG      D DL P
Sbjct: 296 ENRSMSGPDNRGRGRGGFDRGGMSRGGRGGGRGGMGAGERGGFNKPGGPMDEGPDLDLGP 355

Query: 142 SRAP 145
              P
Sbjct: 356 PVDP 359


>gi|4885225 Ewing sarcoma breakpoint region 1 isoform 2 [Homo
           sapiens]
          Length = 656

 Score = 82.0 bits (201), Expect = 8e-16
 Identities = 96/316 (30%), Positives = 117/316 (37%), Gaps = 73/316 (23%)

Query: 42  DRETNKSRGFAFVTFESPADAKAAARDMNGKSLDGKAIKVAQA-TKPAFESSRRGPPPPR 100
           D+ET K +G A V++E P  AKAA    +GK   G  +KV+ A  KP   S R G PP  
Sbjct: 403 DKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPPMNSMRGGLPPRE 462

Query: 101 SRGRPRFLRGTRGGGGGP----RRSPSRGGPDDDGGYTADFDLRPSRAPMPMKRGPPPRR 156
            RG P  LRG  GG GGP     R   RGG  D GG+                   PPR 
Sbjct: 463 GRGMPPPLRGGPGGPGGPGGPMGRMGGRGG--DRGGF-------------------PPR- 500

Query: 157 VGPPPKRAAPSGPARSSGGGMRGRALAVRGRDGYSGPPRREPLPPRRDPYLGPRDEGYSS 216
            GP   R  PSG     GG ++ RA                     + P  G  ++ ++ 
Sbjct: 501 -GPRGSRGNPSG-----GGNVQHRA------------------GDWQCPNPGCGNQNFAW 536

Query: 217 RDGYSSRDYREPRGFAPSPGEYTHRDYGHSSVRDDCPLRGYSDRDGYGGRDRDYGDHLSR 276
           R   +     +P GF P P                 P  G   R G GG     G  + R
Sbjct: 537 RTECNQCKAPKPEGFLPPPFP---------------PPGGDRGRGGPGGMRGGRGGLMDR 581

Query: 277 GSHREPFES--YGELRGAAPGRGTPPSYGGGGRYEEYRGYSPDAYS--GGRDSYSSSYGR 332
           G     F     G+  G   GRG      GGGR     G         GGR       G+
Sbjct: 582 GGPGGMFRGGRGGDRGGFRGGRGMDRGGFGGGRRGGPGGPPGPLMEQMGGRRGGRGGPGK 641

Query: 333 SDRYSRGRHRVGRPDR 348
            D   +G HR  R DR
Sbjct: 642 MD---KGEHRQERRDR 654



 Score = 29.3 bits (64), Expect = 6.4
 Identities = 25/68 (36%), Positives = 28/68 (41%), Gaps = 15/68 (22%)

Query: 90  ESSRRGPPPPRSRGRPRFLRG--TRGGGGGPRRSPSR----------GGPDDDGGYTADF 137
           E+     P  R RGR  F RG  +RGG GG R               GGP D+G    D 
Sbjct: 290 ENRSMSGPDNRGRGRGGFDRGGMSRGGRGGGRGGMGSAGERGGFNKPGGPMDEG---PDL 346

Query: 138 DLRPSRAP 145
           DL P   P
Sbjct: 347 DLGPPVDP 354


>gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens]
          Length = 407

 Score = 82.0 bits (201), Expect = 8e-16
 Identities = 87/320 (27%), Positives = 124/320 (38%), Gaps = 35/320 (10%)

Query: 6   RPGKLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKAA 65
           +  K+F+GG+     E  L   F K+G + EV+++ D E  + RGF F+TFE       A
Sbjct: 111 KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQA 170

Query: 66  ARDMNGKSLDGKAIKVAQATKPAFESSRRGPPPPRSRGRPRFLRGTRGGGGGPRRSPSRG 125
             +M+   + GK ++V +A     +S   G P     G         G  G P  +  +G
Sbjct: 171 V-NMHFHDIMGKKVEVKRAEPRDSKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQQG 229

Query: 126 -GPDDDGGYTADFDLRPSRAPMPMKRGPPPRRVGPPPK-----RAAPSGPARSSGGGMRG 179
            GP   G +           P P  RG PP    PPP       + P G      G  +G
Sbjct: 230 YGP--QGMWVPAGQAIGGYGPPPAGRGAPP----PPPPFTSYIVSTPPGGFPPPQGFPQG 283

Query: 180 RALAVRGRDGYSGPPRREPLPPRRDPYLGPRDEGYSSRDGYSSRDYREPRGFAPSPGEYT 239
                +   GY GPP     PP  D +  P      +  G +      P  F P P +  
Sbjct: 284 YGAPPQFSFGY-GPP-----PPPPDQFAPPGVPPPPATPGAA------PLAFPPPPSQAA 331

Query: 240 HRDYGHSSVRDDCPLRGYSDRDGYGGRDRDYGDHLSRGSHREPFESYGELRGAAPGRGTP 299
                  + + D P   Y    GYG     +G   S  S + P  SYG    + PG G P
Sbjct: 332 PDMSKPPTAQPDFP---YGQYAGYGQDLSGFGQGFSDPSQQPP--SYG--GPSVPGSGGP 384

Query: 300 PSYGGG---GRYEEYRGYSP 316
           P+ G G   G+    +G+ P
Sbjct: 385 PAGGSGFGRGQNHNVQGFHP 404



 Score = 71.6 bits (174), Expect = 1e-12
 Identities = 40/109 (36%), Positives = 60/109 (55%), Gaps = 8/109 (7%)

Query: 4   ADRPGKLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 63
           AD  GKLF+GGL+  T ++ L + F +YG +V+ ++MKD+ TN+SRGF FV F+ P +  
Sbjct: 6   ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP-NCV 64

Query: 64  AAARDMNGKSLDGKAIKVAQATKPAFESSRRGPPPPRSRGRPRFLRGTR 112
                    +LDG+ I     T        RG  P R+R +  + +G R
Sbjct: 65  GTVLASRPHTLDGRNIDPKPCTP-------RGMQPERTRPKEGWQKGPR 106


>gi|4507353 TBP-associated factor 15 isoform 2 [Homo sapiens]
          Length = 589

 Score = 77.8 bits (190), Expect = 2e-14
 Identities = 113/366 (30%), Positives = 129/366 (35%), Gaps = 67/366 (18%)

Query: 39  LMKDRETNKSRGFAFVTFESPADAKAAARDMNGKSLDGKAIKVAQATKPAFESSRRGPPP 98
           L  D++T K +G A V+F+ P  AKAA    +GK   G  IKV+ AT+            
Sbjct: 270 LYTDKDTGKPKGEATVSFDDPPSAKAAIDWFDGKEFHGNIIKVSFATR------------ 317

Query: 99  PRSRGRPRFLRGTRGGGGGPRRS----PSRGGPDDDGGYTADFDL---RPSRAPMPMKRG 151
                RP F+RG  GG GG RR       RGG    GG     D     PS   M   R 
Sbjct: 318 -----RPEFMRG--GGSGGGRRGRGGYRGRGGFQGRGGDPKSGDWVCPNPSCGNMNFARR 370

Query: 152 PPPRRVGPPPKRAAPSGPARSSGGGMRGRALAVRGRDGYSGPPRREPLPPRRDPYLGPRD 211
               +   P         +R SGG  RGR     G  GY G   R      R  Y G R 
Sbjct: 371 NSCNQCNEPRPE-----DSRPSGGDFRGRGYG--GERGYRG---RGGRGGDRGGYGGDRS 420

Query: 212 EGYSSRDGYSSRDYREPRGFAPSPGEYTHRDYGHSSVRDDCPLRGYSDRDGYGGRDRDYG 271
            G    D  S   Y   R      G+ +   YG              DR G  G DR  G
Sbjct: 421 GGGYGGDRSSGGGYSGDRSGGGYGGDRSGGGYG-------------GDRGGGYGGDRGGG 467

Query: 272 DHLSRGSHREPFESYGELRGAAPG-RGTPPSYGG--GGRYEEYRGYSPD--AYSGGRDSY 326
               RG        YG  RG   G RG    YGG  GG   +  GY  D   Y G R  Y
Sbjct: 468 YGGDRGG------GYGGDRGGYGGDRG--GGYGGDRGGYGGDRGGYGGDRGGYGGDRGGY 519

Query: 327 SSSYGRSDRYSRGRHRVGRPDRGLSLSMERGCPPQRDSYSRSGCRVPRGGGRLGGRLERG 386
               G   R   G  R G    G       G    R      G R    GG  GG   + 
Sbjct: 520 G---GDRSRGGYGGDRGG--GSGYGGDRSGGYGGDRSGGGYGGDRGGGYGGDRGGYGGKM 574

Query: 387 GGRSRY 392
           GGR+ Y
Sbjct: 575 GGRNDY 580



 Score = 30.8 bits (68), Expect = 2.2
 Identities = 17/63 (26%), Positives = 26/63 (41%)

Query: 269 DYGDHLSRGSHREPFESYGELRGAAPGRGTPPSYGGGGRYEEYRGYSPDAYSGGRDSYSS 328
           D G +   G  ++ + +YG       G+ +    G G   +   G +   YS    SYS 
Sbjct: 3   DSGSYGQSGGEQQSYSTYGNPGSQGYGQASQSYSGYGQTTDSSYGQNYSGYSSYGQSYSQ 62

Query: 329 SYG 331
           SYG
Sbjct: 63  SYG 65


>gi|21327701 TBP-associated factor 15 isoform 1 [Homo sapiens]
          Length = 592

 Score = 77.8 bits (190), Expect = 2e-14
 Identities = 113/366 (30%), Positives = 129/366 (35%), Gaps = 67/366 (18%)

Query: 39  LMKDRETNKSRGFAFVTFESPADAKAAARDMNGKSLDGKAIKVAQATKPAFESSRRGPPP 98
           L  D++T K +G A V+F+ P  AKAA    +GK   G  IKV+ AT+            
Sbjct: 273 LYTDKDTGKPKGEATVSFDDPPSAKAAIDWFDGKEFHGNIIKVSFATR------------ 320

Query: 99  PRSRGRPRFLRGTRGGGGGPRRS----PSRGGPDDDGGYTADFDL---RPSRAPMPMKRG 151
                RP F+RG  GG GG RR       RGG    GG     D     PS   M   R 
Sbjct: 321 -----RPEFMRG--GGSGGGRRGRGGYRGRGGFQGRGGDPKSGDWVCPNPSCGNMNFARR 373

Query: 152 PPPRRVGPPPKRAAPSGPARSSGGGMRGRALAVRGRDGYSGPPRREPLPPRRDPYLGPRD 211
               +   P         +R SGG  RGR     G  GY G   R      R  Y G R 
Sbjct: 374 NSCNQCNEPRPE-----DSRPSGGDFRGRGYG--GERGYRG---RGGRGGDRGGYGGDRS 423

Query: 212 EGYSSRDGYSSRDYREPRGFAPSPGEYTHRDYGHSSVRDDCPLRGYSDRDGYGGRDRDYG 271
            G    D  S   Y   R      G+ +   YG              DR G  G DR  G
Sbjct: 424 GGGYGGDRSSGGGYSGDRSGGGYGGDRSGGGYG-------------GDRGGGYGGDRGGG 470

Query: 272 DHLSRGSHREPFESYGELRGAAPG-RGTPPSYGG--GGRYEEYRGYSPD--AYSGGRDSY 326
               RG        YG  RG   G RG    YGG  GG   +  GY  D   Y G R  Y
Sbjct: 471 YGGDRGG------GYGGDRGGYGGDRG--GGYGGDRGGYGGDRGGYGGDRGGYGGDRGGY 522

Query: 327 SSSYGRSDRYSRGRHRVGRPDRGLSLSMERGCPPQRDSYSRSGCRVPRGGGRLGGRLERG 386
               G   R   G  R G    G       G    R      G R    GG  GG   + 
Sbjct: 523 G---GDRSRGGYGGDRGG--GSGYGGDRSGGYGGDRSGGGYGGDRGGGYGGDRGGYGGKM 577

Query: 387 GGRSRY 392
           GGR+ Y
Sbjct: 578 GGRNDY 583



 Score = 30.4 bits (67), Expect = 2.9
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 9/69 (13%)

Query: 269 DYGDHLSRGSHREPFESYGELRGAAPGRGTPPSYGGGGRY------EEYRGYSPDAYSGG 322
           D G +   G  ++ + +YG       G+ +  SY G G+       + Y GYS  +Y   
Sbjct: 3   DSGSYGQSGGEQQSYSTYGNPGSQGYGQAS-QSYSGYGQTTDSSYGQNYSGYS--SYGQS 59

Query: 323 RDSYSSSYG 331
           +  YS SYG
Sbjct: 60  QSGYSQSYG 68


>gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens]
          Length = 221

 Score = 75.5 bits (184), Expect = 8e-14
 Identities = 48/118 (40%), Positives = 59/118 (50%), Gaps = 12/118 (10%)

Query: 10  LFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKAAARDM 69
           L +  L   T    L   F KYGR+ +V + +DR T +SRGFAFV F    DA+ A   M
Sbjct: 16  LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75

Query: 70  NGKSLDGKAIKVAQA---TKPAFESSRRGPPPPRSRGRPRFLRGTRGGGGGPRRSPSR 124
           +G  LDG+ ++V  A     P    SRRGPPP R  G         GG G   RSP R
Sbjct: 76  DGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGG---------GGYGRRSRSPRR 124



 Score = 31.6 bits (70), Expect = 1.3
 Identities = 39/139 (28%), Positives = 44/139 (31%), Gaps = 5/139 (3%)

Query: 238 YTHRDYGHSSVRDDCPLRGYSDRDGYGGRDRDYGDHLSRGSHREPFESYGELRGAAPGRG 297
           Y  RD      R    +R +  RD     D   G  L     R     YG    +   R 
Sbjct: 44  YIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRR 103

Query: 298 TPPS--YGGGGRYEEYRGYSPDAYSGGRDSYSSSYGRSDRYSRGRHRVGRPDRGLSLSME 355
            PP   YGGGG     R       S  R    S      RYSR + R     R  S S  
Sbjct: 104 GPPPRRYGGGGYGRRSRSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSKS 163

Query: 356 RGC---PPQRDSYSRSGCR 371
           R       +  S SRS  R
Sbjct: 164 RSARRSKSKSSSVSRSRSR 182


>gi|4759098 splicing factor, arginine/serine-rich 10 [Homo sapiens]
          Length = 288

 Score = 73.6 bits (179), Expect = 3e-13
 Identities = 51/137 (37%), Positives = 67/137 (48%), Gaps = 22/137 (16%)

Query: 10  LFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKAAARDM 69
           L + GL+L T E+ L   F KYG I +V ++ D+++ +SRGFAFV FE+  DAK A    
Sbjct: 120 LGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 179

Query: 70  NGKSLDGKAIKV--------------AQATKPAFESSRRGPPPPRSRGR--------PRF 107
           NG  LDG+ I+V                  +P + SSRR     R   R         R 
Sbjct: 180 NGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRRRDYYDRGYDRGYDDRDYYSRS 239

Query: 108 LRGTRGGGGGPRRSPSR 124
            RG  GGGGG R +  R
Sbjct: 240 YRGGGGGGGGWRAAQDR 256



 Score = 29.6 bits (65), Expect = 4.9
 Identities = 42/126 (33%), Positives = 44/126 (34%), Gaps = 42/126 (33%)

Query: 229 RGFAPSPGEYTHRDYGHSSVRDDCPLRGYSDRDGYGGRDRDYGDHLSRGSHREPFESYGE 288
           R   P+PG Y  R    SS R D   RGY DR   G  DRDY     RG           
Sbjct: 198 RPHTPTPGIYMGRPTYGSSRRRDYYDRGY-DR---GYDDRDYYSRSYRG----------- 242

Query: 289 LRGAAPGRGTPPSYGGGG------RYEEYRGYSPDAYSGGRDSYSSSYGRSDRYSRGRHR 342
                 G G     GGGG      R + YR  SP  Y          Y R    SR R R
Sbjct: 243 ------GGG-----GGGGWRAAQDRDQIYRRRSPSPY----------YSRGGYRSRSRSR 281

Query: 343 VGRPDR 348
              P R
Sbjct: 282 SYSPRR 287


>gi|156151396 heterogeneous nuclear ribonucleoprotein R isoform 3
           [Homo sapiens]
          Length = 535

 Score = 73.6 bits (179), Expect = 3e-13
 Identities = 80/263 (30%), Positives = 99/263 (37%), Gaps = 71/263 (26%)

Query: 10  LFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKAAARDM 69
           LF+  L     E+ LE  F ++G++  V  +KD        +AFV FE    A  A  +M
Sbjct: 245 LFVRNLATTVTEEILEKSFSEFGKLERVKKLKD--------YAFVHFEDRGAAVKAMDEM 296

Query: 70  NGKSLDGKAIKVAQATKP---------AFESSR-------------RGPPPPRSRGRPRF 107
           NGK ++G+ I++  A  P         A ++SR             R PPP R RGR   
Sbjct: 297 NGKEIEGEEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGR--- 353

Query: 108 LRGTRGGGGGP----------------RRSPSRGGPDD-----DGGYT--ADFDLRPSRA 144
             G RGG G P                     RGG +D     D GY        R  R 
Sbjct: 354 -GGGRGGYGYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRGGGRGGRG 412

Query: 145 PMPMKRG---PPPRRVGPPPKRAAPSGPARSSGGGMRGRALAVRGRDGYSGPPRREPLPP 201
             P  RG   PPPR      +R AP GP R S GG  G A   RGR        R     
Sbjct: 413 APPPPRGRGAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRGSRGNR----- 467

Query: 202 RRDPYLGPRDEGYSSRDGYSSRD 224
                 G    G    DGY+  D
Sbjct: 468 ------GGNVGGKRKADGYNQPD 484



 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 53/142 (37%), Positives = 61/142 (42%), Gaps = 25/142 (17%)

Query: 266 RDRDYGDHLSRGSHREPFESYGELRGAAPGR-GTPPSYGG-GGRYEEYRGYSPDAYSGG- 322
           R   Y D+      R P    G  RG   G  G PP Y G    Y++Y GY    Y GG 
Sbjct: 329 RSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYPPDYYGYEDYYDDYYGYDYHDYRGGY 388

Query: 323 RDSYSSSYGRSDRYS---RGRHRVGR----PDRGLSLSMERGCPPQRD--SYSRSGCRV- 372
            D Y   YG  D Y+   RG  R GR    P RG      RG PP R    YS+ G  + 
Sbjct: 389 EDPY---YGYDDGYAVRGRGGGRGGRGAPPPPRG------RGAPPPRGRAGYSQRGAPLG 439

Query: 373 -PRG--GGRLGGRLERGGGRSR 391
            PRG  GGR G   ++ G  SR
Sbjct: 440 PPRGSRGGRGGPAQQQRGRGSR 461



 Score = 40.8 bits (94), Expect = 0.002
 Identities = 89/351 (25%), Positives = 122/351 (34%), Gaps = 51/351 (14%)

Query: 9   KLFIGGLNLETDEKALEAEFGKYGRIVE-----VLLMKDRETNKSRGFAFVTFES-PADA 62
           +LF+G +     ++ +  EF K   + E     +L  +  +  K+RGF F+ +E   + A
Sbjct: 146 RLFVGSIPKNKTKENILEEFSKVTGLTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAA 205

Query: 63  KAAARDMNGKSLDGKAIKVAQATKPAFESSRRGPPPPRSRGRPRFLR--GTRGGGGGPRR 120
           +A  R M+GK      +   +   P  E      P   ++ +  F+R   T        +
Sbjct: 206 QARRRLMSGKVKVWGNVVTVEWADPVEEPD----PEVMAKVKVLFVRNLATTVTEEILEK 261

Query: 121 SPSRGGPDD------DGGYTADFDLRPSRAPMPMKRGPPPRRVGPPPKRAAPSGPARSSG 174
           S S  G  +      D  +    D   +   M    G            A P    R   
Sbjct: 262 SFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKER 321

Query: 175 GGMRGRALAVRGRDGYSGPPRREPLPPRRDPYLGPRDEGYS-SRDGYSSRDYREPRGFAP 233
              R  + +    D Y  PP R P PP R    G    GY    D Y   DY +      
Sbjct: 322 QAARQASRSTAYEDYYYHPPPRMP-PPIRGRGRGGGRGGYGYPPDYYGYEDYYD------ 374

Query: 234 SPGEYTHRDYGHSSVRDDCPLRGYSDRDGYGGRDRDYGDHLSRGSHREPFESYGELRGAA 293
              +Y   DY       + P  GY   DGY  R R  G    RG            RGA 
Sbjct: 375 ---DYYGYDYHDYRGGYEDPYYGYD--DGYAVRGRGGG----RGG-----------RGAP 414

Query: 294 P---GRGTPPSYGGGGRYEEYRGYSPDAYS-GGRDSYSSSY-GRSDRYSRG 339
           P   GRG PP  G  G  +      P   S GGR   +    GR  R SRG
Sbjct: 415 PPPRGRGAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRGSRG 465



 Score = 34.3 bits (77), Expect = 0.20
 Identities = 19/59 (32%), Positives = 33/59 (55%)

Query: 9   KLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKAAAR 67
           ++F+G +  +  E  L   F K G I ++ LM D  + ++RG+AF+TF     A+ A +
Sbjct: 65  EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVK 123


>gi|156151394 heterogeneous nuclear ribonucleoprotein R isoform 1
           [Homo sapiens]
          Length = 636

 Score = 73.6 bits (179), Expect = 3e-13
 Identities = 80/263 (30%), Positives = 99/263 (37%), Gaps = 71/263 (26%)

Query: 10  LFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKAAARDM 69
           LF+  L     E+ LE  F ++G++  V  +KD        +AFV FE    A  A  +M
Sbjct: 346 LFVRNLATTVTEEILEKSFSEFGKLERVKKLKD--------YAFVHFEDRGAAVKAMDEM 397

Query: 70  NGKSLDGKAIKVAQATKP---------AFESSR-------------RGPPPPRSRGRPRF 107
           NGK ++G+ I++  A  P         A ++SR             R PPP R RGR   
Sbjct: 398 NGKEIEGEEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGR--- 454

Query: 108 LRGTRGGGGGP----------------RRSPSRGGPDD-----DGGYT--ADFDLRPSRA 144
             G RGG G P                     RGG +D     D GY        R  R 
Sbjct: 455 -GGGRGGYGYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRGGGRGGRG 513

Query: 145 PMPMKRG---PPPRRVGPPPKRAAPSGPARSSGGGMRGRALAVRGRDGYSGPPRREPLPP 201
             P  RG   PPPR      +R AP GP R S GG  G A   RGR        R     
Sbjct: 514 APPPPRGRGAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRGSRGNR----- 568

Query: 202 RRDPYLGPRDEGYSSRDGYSSRD 224
                 G    G    DGY+  D
Sbjct: 569 ------GGNVGGKRKADGYNQPD 585



 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 53/142 (37%), Positives = 61/142 (42%), Gaps = 25/142 (17%)

Query: 266 RDRDYGDHLSRGSHREPFESYGELRGAAPGR-GTPPSYGG-GGRYEEYRGYSPDAYSGG- 322
           R   Y D+      R P    G  RG   G  G PP Y G    Y++Y GY    Y GG 
Sbjct: 430 RSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYPPDYYGYEDYYDDYYGYDYHDYRGGY 489

Query: 323 RDSYSSSYGRSDRYS---RGRHRVGR----PDRGLSLSMERGCPPQRD--SYSRSGCRV- 372
            D Y   YG  D Y+   RG  R GR    P RG      RG PP R    YS+ G  + 
Sbjct: 490 EDPY---YGYDDGYAVRGRGGGRGGRGAPPPPRG------RGAPPPRGRAGYSQRGAPLG 540

Query: 373 -PRG--GGRLGGRLERGGGRSR 391
            PRG  GGR G   ++ G  SR
Sbjct: 541 PPRGSRGGRGGPAQQQRGRGSR 562



 Score = 40.8 bits (94), Expect = 0.002
 Identities = 89/351 (25%), Positives = 122/351 (34%), Gaps = 51/351 (14%)

Query: 9   KLFIGGLNLETDEKALEAEFGKYGRIVE-----VLLMKDRETNKSRGFAFVTFES-PADA 62
           +LF+G +     ++ +  EF K   + E     +L  +  +  K+RGF F+ +E   + A
Sbjct: 247 RLFVGSIPKNKTKENILEEFSKVTGLTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAA 306

Query: 63  KAAARDMNGKSLDGKAIKVAQATKPAFESSRRGPPPPRSRGRPRFLR--GTRGGGGGPRR 120
           +A  R M+GK      +   +   P  E      P   ++ +  F+R   T        +
Sbjct: 307 QARRRLMSGKVKVWGNVVTVEWADPVEEPD----PEVMAKVKVLFVRNLATTVTEEILEK 362

Query: 121 SPSRGGPDD------DGGYTADFDLRPSRAPMPMKRGPPPRRVGPPPKRAAPSGPARSSG 174
           S S  G  +      D  +    D   +   M    G            A P    R   
Sbjct: 363 SFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKER 422

Query: 175 GGMRGRALAVRGRDGYSGPPRREPLPPRRDPYLGPRDEGYS-SRDGYSSRDYREPRGFAP 233
              R  + +    D Y  PP R P PP R    G    GY    D Y   DY +      
Sbjct: 423 QAARQASRSTAYEDYYYHPPPRMP-PPIRGRGRGGGRGGYGYPPDYYGYEDYYD------ 475

Query: 234 SPGEYTHRDYGHSSVRDDCPLRGYSDRDGYGGRDRDYGDHLSRGSHREPFESYGELRGAA 293
              +Y   DY       + P  GY   DGY  R R  G    RG            RGA 
Sbjct: 476 ---DYYGYDYHDYRGGYEDPYYGYD--DGYAVRGRGGG----RGG-----------RGAP 515

Query: 294 P---GRGTPPSYGGGGRYEEYRGYSPDAYS-GGRDSYSSSY-GRSDRYSRG 339
           P   GRG PP  G  G  +      P   S GGR   +    GR  R SRG
Sbjct: 516 PPPRGRGAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRGSRG 566



 Score = 34.3 bits (77), Expect = 0.20
 Identities = 19/59 (32%), Positives = 33/59 (55%)

Query: 9   KLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKAAAR 67
           ++F+G +  +  E  L   F K G I ++ LM D  + ++RG+AF+TF     A+ A +
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVK 224


>gi|156151392 heterogeneous nuclear ribonucleoprotein R isoform 4
           [Homo sapiens]
          Length = 532

 Score = 73.6 bits (179), Expect = 3e-13
 Identities = 80/263 (30%), Positives = 99/263 (37%), Gaps = 71/263 (26%)

Query: 10  LFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKAAARDM 69
           LF+  L     E+ LE  F ++G++  V  +KD        +AFV FE    A  A  +M
Sbjct: 242 LFVRNLATTVTEEILEKSFSEFGKLERVKKLKD--------YAFVHFEDRGAAVKAMDEM 293

Query: 70  NGKSLDGKAIKVAQATKP---------AFESSR-------------RGPPPPRSRGRPRF 107
           NGK ++G+ I++  A  P         A ++SR             R PPP R RGR   
Sbjct: 294 NGKEIEGEEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGR--- 350

Query: 108 LRGTRGGGGGP----------------RRSPSRGGPDD-----DGGYT--ADFDLRPSRA 144
             G RGG G P                     RGG +D     D GY        R  R 
Sbjct: 351 -GGGRGGYGYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRGGGRGGRG 409

Query: 145 PMPMKRG---PPPRRVGPPPKRAAPSGPARSSGGGMRGRALAVRGRDGYSGPPRREPLPP 201
             P  RG   PPPR      +R AP GP R S GG  G A   RGR        R     
Sbjct: 410 APPPPRGRGAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRGSRGNR----- 464

Query: 202 RRDPYLGPRDEGYSSRDGYSSRD 224
                 G    G    DGY+  D
Sbjct: 465 ------GGNVGGKRKADGYNQPD 481



 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 53/142 (37%), Positives = 61/142 (42%), Gaps = 25/142 (17%)

Query: 266 RDRDYGDHLSRGSHREPFESYGELRGAAPGR-GTPPSYGG-GGRYEEYRGYSPDAYSGG- 322
           R   Y D+      R P    G  RG   G  G PP Y G    Y++Y GY    Y GG 
Sbjct: 326 RSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYPPDYYGYEDYYDDYYGYDYHDYRGGY 385

Query: 323 RDSYSSSYGRSDRYS---RGRHRVGR----PDRGLSLSMERGCPPQRD--SYSRSGCRV- 372
            D Y   YG  D Y+   RG  R GR    P RG      RG PP R    YS+ G  + 
Sbjct: 386 EDPY---YGYDDGYAVRGRGGGRGGRGAPPPPRG------RGAPPPRGRAGYSQRGAPLG 436

Query: 373 -PRG--GGRLGGRLERGGGRSR 391
            PRG  GGR G   ++ G  SR
Sbjct: 437 PPRGSRGGRGGPAQQQRGRGSR 458



 Score = 41.6 bits (96), Expect = 0.001
 Identities = 89/348 (25%), Positives = 122/348 (35%), Gaps = 48/348 (13%)

Query: 9   KLFIGGLNLETDEKALEAEFGKY--GRIVEVLLMKDRETNKSRGFAFVTFES-PADAKAA 65
           +LF+G +     ++ +  EF K   G +  +L  +  +  K+RGF F+ +E   + A+A 
Sbjct: 146 RLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQAR 205

Query: 66  ARDMNGKSLDGKAIKVAQATKPAFESSRRGPPPPRSRGRPRFLR--GTRGGGGGPRRSPS 123
            R M+GK      +   +   P  E      P   ++ +  F+R   T        +S S
Sbjct: 206 RRLMSGKVKVWGNVVTVEWADPVEEPD----PEVMAKVKVLFVRNLATTVTEEILEKSFS 261

Query: 124 RGGPDD------DGGYTADFDLRPSRAPMPMKRGPPPRRVGPPPKRAAPSGPARSSGGGM 177
             G  +      D  +    D   +   M    G            A P    R      
Sbjct: 262 EFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQAA 321

Query: 178 RGRALAVRGRDGYSGPPRREPLPPRRDPYLGPRDEGYS-SRDGYSSRDYREPRGFAPSPG 236
           R  + +    D Y  PP R P PP R    G    GY    D Y   DY +         
Sbjct: 322 RQASRSTAYEDYYYHPPPRMP-PPIRGRGRGGGRGGYGYPPDYYGYEDYYD--------- 371

Query: 237 EYTHRDYGHSSVRDDCPLRGYSDRDGYGGRDRDYGDHLSRGSHREPFESYGELRGAAP-- 294
           +Y   DY       + P  GY   DGY  R R  G    RG            RGA P  
Sbjct: 372 DYYGYDYHDYRGGYEDPYYGYD--DGYAVRGRGGG----RGG-----------RGAPPPP 414

Query: 295 -GRGTPPSYGGGGRYEEYRGYSPDAYS-GGRDSYSSSY-GRSDRYSRG 339
            GRG PP  G  G  +      P   S GGR   +    GR  R SRG
Sbjct: 415 RGRGAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRGSRG 462



 Score = 34.3 bits (77), Expect = 0.20
 Identities = 19/59 (32%), Positives = 33/59 (55%)

Query: 9   KLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKAAAR 67
           ++F+G +  +  E  L   F K G I ++ LM D  + ++RG+AF+TF     A+ A +
Sbjct: 65  EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVK 123


>gi|5031755 heterogeneous nuclear ribonucleoprotein R isoform 2
           [Homo sapiens]
          Length = 633

 Score = 73.6 bits (179), Expect = 3e-13
 Identities = 80/263 (30%), Positives = 99/263 (37%), Gaps = 71/263 (26%)

Query: 10  LFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKAAARDM 69
           LF+  L     E+ LE  F ++G++  V  +KD        +AFV FE    A  A  +M
Sbjct: 343 LFVRNLATTVTEEILEKSFSEFGKLERVKKLKD--------YAFVHFEDRGAAVKAMDEM 394

Query: 70  NGKSLDGKAIKVAQATKP---------AFESSR-------------RGPPPPRSRGRPRF 107
           NGK ++G+ I++  A  P         A ++SR             R PPP R RGR   
Sbjct: 395 NGKEIEGEEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGR--- 451

Query: 108 LRGTRGGGGGP----------------RRSPSRGGPDD-----DGGYT--ADFDLRPSRA 144
             G RGG G P                     RGG +D     D GY        R  R 
Sbjct: 452 -GGGRGGYGYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRGGGRGGRG 510

Query: 145 PMPMKRG---PPPRRVGPPPKRAAPSGPARSSGGGMRGRALAVRGRDGYSGPPRREPLPP 201
             P  RG   PPPR      +R AP GP R S GG  G A   RGR        R     
Sbjct: 511 APPPPRGRGAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRGSRGNR----- 565

Query: 202 RRDPYLGPRDEGYSSRDGYSSRD 224
                 G    G    DGY+  D
Sbjct: 566 ------GGNVGGKRKADGYNQPD 582



 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 53/142 (37%), Positives = 61/142 (42%), Gaps = 25/142 (17%)

Query: 266 RDRDYGDHLSRGSHREPFESYGELRGAAPGR-GTPPSYGG-GGRYEEYRGYSPDAYSGG- 322
           R   Y D+      R P    G  RG   G  G PP Y G    Y++Y GY    Y GG 
Sbjct: 427 RSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYPPDYYGYEDYYDDYYGYDYHDYRGGY 486

Query: 323 RDSYSSSYGRSDRYS---RGRHRVGR----PDRGLSLSMERGCPPQRD--SYSRSGCRV- 372
            D Y   YG  D Y+   RG  R GR    P RG      RG PP R    YS+ G  + 
Sbjct: 487 EDPY---YGYDDGYAVRGRGGGRGGRGAPPPPRG------RGAPPPRGRAGYSQRGAPLG 537

Query: 373 -PRG--GGRLGGRLERGGGRSR 391
            PRG  GGR G   ++ G  SR
Sbjct: 538 PPRGSRGGRGGPAQQQRGRGSR 559



 Score = 41.6 bits (96), Expect = 0.001
 Identities = 89/348 (25%), Positives = 122/348 (35%), Gaps = 48/348 (13%)

Query: 9   KLFIGGLNLETDEKALEAEFGKY--GRIVEVLLMKDRETNKSRGFAFVTFES-PADAKAA 65
           +LF+G +     ++ +  EF K   G +  +L  +  +  K+RGF F+ +E   + A+A 
Sbjct: 247 RLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQAR 306

Query: 66  ARDMNGKSLDGKAIKVAQATKPAFESSRRGPPPPRSRGRPRFLR--GTRGGGGGPRRSPS 123
            R M+GK      +   +   P  E      P   ++ +  F+R   T        +S S
Sbjct: 307 RRLMSGKVKVWGNVVTVEWADPVEEPD----PEVMAKVKVLFVRNLATTVTEEILEKSFS 362

Query: 124 RGGPDD------DGGYTADFDLRPSRAPMPMKRGPPPRRVGPPPKRAAPSGPARSSGGGM 177
             G  +      D  +    D   +   M    G            A P    R      
Sbjct: 363 EFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQAA 422

Query: 178 RGRALAVRGRDGYSGPPRREPLPPRRDPYLGPRDEGYS-SRDGYSSRDYREPRGFAPSPG 236
           R  + +    D Y  PP R P PP R    G    GY    D Y   DY +         
Sbjct: 423 RQASRSTAYEDYYYHPPPRMP-PPIRGRGRGGGRGGYGYPPDYYGYEDYYD--------- 472

Query: 237 EYTHRDYGHSSVRDDCPLRGYSDRDGYGGRDRDYGDHLSRGSHREPFESYGELRGAAP-- 294
           +Y   DY       + P  GY   DGY  R R  G    RG            RGA P  
Sbjct: 473 DYYGYDYHDYRGGYEDPYYGYD--DGYAVRGRGGG----RGG-----------RGAPPPP 515

Query: 295 -GRGTPPSYGGGGRYEEYRGYSPDAYS-GGRDSYSSSY-GRSDRYSRG 339
            GRG PP  G  G  +      P   S GGR   +    GR  R SRG
Sbjct: 516 RGRGAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRGSRG 563



 Score = 34.3 bits (77), Expect = 0.20
 Identities = 19/59 (32%), Positives = 33/59 (55%)

Query: 9   KLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKAAAR 67
           ++F+G +  +  E  L   F K G I ++ LM D  + ++RG+AF+TF     A+ A +
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVK 224


>gi|9558733 transformer-2 alpha [Homo sapiens]
          Length = 282

 Score = 73.2 bits (178), Expect = 4e-13
 Identities = 58/148 (39%), Positives = 73/148 (49%), Gaps = 15/148 (10%)

Query: 10  LFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKAAARDM 69
           L + GL+L T E+ L   F +YG +  V ++ D+ T +SRGFAFV FE   D+K A    
Sbjct: 121 LGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERA 180

Query: 70  NGKSLDGKAIKVAQA-TKPAFESSRRGPPPPRSRGRPRFL------RGTRGGGGGPRRSP 122
           NG  LDG+ I+V  + TK A       P P    GRP          G  GGGGG RR  
Sbjct: 181 NGMELDGRRIRVDYSITKRA-----HTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGRRRD 235

Query: 123 SRGGPDDDGGYT--ADFDLR-PSRAPMP 147
           S      D GY    D+D R   R+P P
Sbjct: 236 SYYDRGYDRGYDRYEDYDYRYRRRSPSP 263


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.315    0.140    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,748,540
Number of Sequences: 37866
Number of extensions: 1534497
Number of successful extensions: 11632
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 1057
Number of HSP's that attempted gapping in prelim test: 7064
Number of HSP's gapped (non-prelim): 3986
length of query: 392
length of database: 18,247,518
effective HSP length: 104
effective length of query: 288
effective length of database: 14,309,454
effective search space: 4121122752
effective search space used: 4121122752
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.