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Search of human proteins with 153251823
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|153251823 stromal protein associated with thymii and lymph
nodes [Homo sapiens]
(351 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|153251823 stromal protein associated with thymii and lymph no... 705 0.0
gi|14149821 hypothetical protein LOC84103 [Homo sapiens] 62 8e-10
gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1 ... 40 0.004
gi|157738641 neurofilament, medium polypeptide 150kDa isoform 2 ... 40 0.004
gi|16117781 F-box and WD repeat domain containing 7 isoform 1 [H... 37 0.027
gi|51477700 mediator complex subunit 15 isoform a [Homo sapiens] 37 0.027
gi|21312134 mediator complex subunit 15 isoform b [Homo sapiens] 37 0.027
gi|67782319 spectrin beta isoform b [Homo sapiens] 36 0.059
gi|92091600 ArfGAP with RhoGAP domain, ankyrin repeat and PH dom... 35 0.10
gi|78000158 eukaryotic translation initiation factor 2B, subunit... 35 0.13
gi|71143127 IQ motif and Sec7 domain 3 [Homo sapiens] 34 0.17
gi|151301171 RNA polymerase II transcription factor TAFII140 [Ho... 34 0.22
gi|56549696 E1A binding protein p400 [Homo sapiens] 34 0.22
gi|58530876 melanoma antigen family C, 1 [Homo sapiens] 34 0.22
gi|34365793 WNK lysine deficient protein kinase 4 [Homo sapiens] 33 0.29
gi|25777600 proteasome 26S non-ATPase subunit 1 [Homo sapiens] 33 0.29
gi|21396500 HIRA interacting protein 3 [Homo sapiens] 33 0.38
gi|167614488 TBC1 domain family, member 10B [Homo sapiens] 33 0.38
gi|150170670 piccolo isoform 2 [Homo sapiens] 33 0.38
gi|150378539 piccolo isoform 1 [Homo sapiens] 33 0.38
gi|37574601 zinc finger protein 232 [Homo sapiens] 33 0.38
gi|55749715 hypothetical protein LOC57536 [Homo sapiens] 33 0.50
gi|40538794 coiled-coil domain containing 21 [Homo sapiens] 33 0.50
gi|226958575 RAS protein activator like 2 isoform 2 [Homo sapiens] 32 0.65
gi|124107614 PR domain containing 13 [Homo sapiens] 32 0.85
gi|224458301 family with sequence similarity 186, member A [Homo... 32 1.1
gi|67782321 spectrin beta isoform a [Homo sapiens] 32 1.1
gi|20070266 RAS-like GTP-binding protein REM [Homo sapiens] 32 1.1
gi|195947367 golgi autoantigen, golgin subfamily a, 8B [Homo sap... 31 1.5
gi|31083099 golgi autoantigen, golgin subfamily a, 8A [Homo sapi... 31 1.5
>gi|153251823 stromal protein associated with thymii and lymph nodes
[Homo sapiens]
Length = 351
Score = 705 bits (1819), Expect = 0.0
Identities = 351/351 (100%), Positives = 351/351 (100%)
Query: 1 MATDVQLADYPLMSPKAELKLEKKSGRKPRSPRDSGPQKELVIPGIVDFERIRRALRTPK 60
MATDVQLADYPLMSPKAELKLEKKSGRKPRSPRDSGPQKELVIPGIVDFERIRRALRTPK
Sbjct: 1 MATDVQLADYPLMSPKAELKLEKKSGRKPRSPRDSGPQKELVIPGIVDFERIRRALRTPK 60
Query: 61 PQTPGTYCFGRLSHHSFFSRHHPHPQHVTHIQDLTGKPVCVVRDFPAPLPESTVFSGCQM 120
PQTPGTYCFGRLSHHSFFSRHHPHPQHVTHIQDLTGKPVCVVRDFPAPLPESTVFSGCQM
Sbjct: 61 PQTPGTYCFGRLSHHSFFSRHHPHPQHVTHIQDLTGKPVCVVRDFPAPLPESTVFSGCQM 120
Query: 121 GIPTISVPIGDPQSNRNPQLSSEAWKKELKELASRVAFLTKEDELKKKEKEQKEEPLREQ 180
GIPTISVPIGDPQSNRNPQLSSEAWKKELKELASRVAFLTKEDELKKKEKEQKEEPLREQ
Sbjct: 121 GIPTISVPIGDPQSNRNPQLSSEAWKKELKELASRVAFLTKEDELKKKEKEQKEEPLREQ 180
Query: 181 GAKYSAETGRLIPASTRAVGRRRSHQGQQSQSSSRHEGVQAFLLQDQELLVLELLCQILE 240
GAKYSAETGRLIPASTRAVGRRRSHQGQQSQSSSRHEGVQAFLLQDQELLVLELLCQILE
Sbjct: 181 GAKYSAETGRLIPASTRAVGRRRSHQGQQSQSSSRHEGVQAFLLQDQELLVLELLCQILE 240
Query: 241 TDLLSAIQFWLLYAPPKEKDLALGLLQTAVAQLLPQPLVSIPTEKLLSQLPEVHEPPQEK 300
TDLLSAIQFWLLYAPPKEKDLALGLLQTAVAQLLPQPLVSIPTEKLLSQLPEVHEPPQEK
Sbjct: 241 TDLLSAIQFWLLYAPPKEKDLALGLLQTAVAQLLPQPLVSIPTEKLLSQLPEVHEPPQEK 300
Query: 301 QEPPCSQSPKKTKISPFTKSEKPEYIGEAQVLQMHSSQNTEKKTSKPRAES 351
QEPPCSQSPKKTKISPFTKSEKPEYIGEAQVLQMHSSQNTEKKTSKPRAES
Sbjct: 301 QEPPCSQSPKKTKISPFTKSEKPEYIGEAQVLQMHSSQNTEKKTSKPRAES 351
>gi|14149821 hypothetical protein LOC84103 [Homo sapiens]
Length = 359
Score = 62.0 bits (149), Expect = 8e-10
Identities = 77/304 (25%), Positives = 122/304 (40%), Gaps = 31/304 (10%)
Query: 61 PQTPGTYCFGRLSH------HSFFSRHHPHPQHVTHIQDLTGKPVCVVRDFPAPLPESTV 114
P T G+ SH F RH PHP+ V HI+ L P+C V D E+
Sbjct: 5 PPTSALQIEGKGSHIMARNVSCFLVRHTPHPRRVCHIKGLNNIPICTVND-----DENAF 59
Query: 115 FSGCQMGIPTISVPIGDPQSNRNPQLSSEAWKKELKELASRVAFLT------KEDELKKK 168
+ ++G P +N + S+ K ++ ++ E K K
Sbjct: 60 GTLWEVGQSNYLEKNRIPFANCSYPPSTAVQKSPVRGMSPAPNGAKVPPRPHSEPSRKIK 119
Query: 169 E--KEQKEEPLREQGAKYSAETGRLIPASTRAVGRRRSHQGQQSQSSSRHEGVQAFLLQD 226
E K E PL + + A+ P + G S +++ + + D
Sbjct: 120 ECFKTSSENPLVIKKEEIKAKRPPSPPKACSTPGSCSSGM-TSTKNDVKANTICIPNYLD 178
Query: 227 QELLVLELLCQILETDLLSAIQFWLLYAPPKEKDLALGLLQTAVAQLLPQPLVSIPTEKL 286
QE+ +L LC IL TD L+ + WLL+A KEK+ L+ + +A+ +++ T
Sbjct: 179 QEIKILAKLCSILHTDSLAEVLQWLLHATSKEKEWVSALIHSELAE------INLLTH-- 230
Query: 287 LSQLPEVHEPPQEKQEPPCSQSPKKTKISP-FT-KSEKPEYIGEAQVLQMHSSQNTEKKT 344
+ EP E +PP +SP K+ P FT KS+ E SSQ +E+
Sbjct: 231 -HRRNTSMEPAAETGKPPTVKSPPTVKLPPNFTAKSKVLTRDTEGDQPTRVSSQGSEENK 289
Query: 345 SKPR 348
P+
Sbjct: 290 EVPK 293
>gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1
[Homo sapiens]
Length = 916
Score = 39.7 bits (91), Expect = 0.004
Identities = 57/233 (24%), Positives = 102/233 (43%), Gaps = 26/233 (11%)
Query: 133 QSNRNPQLSSE---AWKKELKELASRVAFLTKEDELKKKEKE-QKEEPLREQGAKY-SAE 187
+ P+ E A K +K A V KE+E +K+E+E Q+EE ++GAK AE
Sbjct: 494 EKEEEPEAEEEEVAAKKSPVKATAPEV----KEEEGEKEEEEGQEEEEEEDEGAKSDQAE 549
Query: 188 TGRLIPASTRAVGRRRSHQGQQ--SQSSSRHEGVQAFLLQD-------QELLVLELLCQI 238
G + G +G+Q ++ + EG +A ++ +E+ E L
Sbjct: 550 EG-----GSEKEGSSEKEEGEQEEGETEAEAEGEEAEAKEEKKVEEKSEEVATKEELVAD 604
Query: 239 LETDLLSAIQFWLLYAPPKEKDLALGLLQTAVAQLLPQPLVSIPTEKLLSQLPEVHEPPQ 298
+ + + + +P +EK + + ++ V + P+ P E+ + P P +
Sbjct: 605 AKVEKPEKAKSPVPKSPVEEKGKS-PVPKSPVEEKGKSPVPKSPVEE-KGKSPVPKSPVE 662
Query: 299 EKQEPPCSQSPKKTKI-SPFTKSEKPEYIGEAQVLQMHSSQNTEKKTSKPRAE 350
EK + P S+SP + K SP KS E +A+V + + EK+ + E
Sbjct: 663 EKGKSPVSKSPVEEKAKSPVPKSPVEEAKSKAEVGKGEQKEEEEKEVKEAPKE 715
>gi|157738641 neurofilament, medium polypeptide 150kDa isoform 2
[Homo sapiens]
Length = 540
Score = 39.7 bits (91), Expect = 0.004
Identities = 57/233 (24%), Positives = 102/233 (43%), Gaps = 26/233 (11%)
Query: 133 QSNRNPQLSSE---AWKKELKELASRVAFLTKEDELKKKEKE-QKEEPLREQGAKY-SAE 187
+ P+ E A K +K A V KE+E +K+E+E Q+EE ++GAK AE
Sbjct: 118 EKEEEPEAEEEEVAAKKSPVKATAPEV----KEEEGEKEEEEGQEEEEEEDEGAKSDQAE 173
Query: 188 TGRLIPASTRAVGRRRSHQGQQ--SQSSSRHEGVQAFLLQD-------QELLVLELLCQI 238
G + G +G+Q ++ + EG +A ++ +E+ E L
Sbjct: 174 EG-----GSEKEGSSEKEEGEQEEGETEAEAEGEEAEAKEEKKVEEKSEEVATKEELVAD 228
Query: 239 LETDLLSAIQFWLLYAPPKEKDLALGLLQTAVAQLLPQPLVSIPTEKLLSQLPEVHEPPQ 298
+ + + + +P +EK + + ++ V + P+ P E+ + P P +
Sbjct: 229 AKVEKPEKAKSPVPKSPVEEKGKS-PVPKSPVEEKGKSPVPKSPVEE-KGKSPVPKSPVE 286
Query: 299 EKQEPPCSQSPKKTKI-SPFTKSEKPEYIGEAQVLQMHSSQNTEKKTSKPRAE 350
EK + P S+SP + K SP KS E +A+V + + EK+ + E
Sbjct: 287 EKGKSPVSKSPVEEKAKSPVPKSPVEEAKSKAEVGKGEQKEEEEKEVKEAPKE 339
>gi|16117781 F-box and WD repeat domain containing 7 isoform 1 [Homo
sapiens]
Length = 707
Score = 37.0 bits (84), Expect = 0.027
Identities = 17/67 (25%), Positives = 38/67 (56%)
Query: 162 EDELKKKEKEQKEEPLREQGAKYSAETGRLIPASTRAVGRRRSHQGQQSQSSSRHEGVQA 221
E+++ + +E++++ LR+Q +++A G ++ R G+ S QGQ ++++R V
Sbjct: 30 EEQMNRVVEEEQQQQLRQQEEEHTARNGEVVGVEPRPGGQNDSQQGQLEENNNRFISVDE 89
Query: 222 FLLQDQE 228
+QE
Sbjct: 90 DSSGNQE 96
>gi|51477700 mediator complex subunit 15 isoform a [Homo sapiens]
Length = 788
Score = 37.0 bits (84), Expect = 0.027
Identities = 41/202 (20%), Positives = 86/202 (42%), Gaps = 15/202 (7%)
Query: 134 SNRNPQLSSEAWKKELKELASRVAFLTKEDELKKKEKEQKEEPLREQGAKYSAETGRLIP 193
S PQ + + L++ + F ++ +++++Q+++ ++ A+ SA +
Sbjct: 145 STATPQTQLQLQQVALQQQQQQQQFQQQQQAALQQQQQQQQQ--QQFQAQQSAMQQQFQA 202
Query: 194 ASTRAVGRRRSHQGQQSQSSSRHEGVQAFLLQDQEL---LVLELLCQILETDLLSAIQFW 250
+ ++ Q QQ H+ Q Q Q+L L+L Q + Q
Sbjct: 203 VVQQQQQLQQQQQQQQHLIKLHHQNQQQIQQQQQQLQRIAQLQLQQQQQQQQQQQQQQQQ 262
Query: 251 LLYAPPKEKDLALGLLQTAVAQLLPQPLVSIPTEKLLSQLPEVHEPPQEKQEPPCSQSPK 310
L A P + Q + Q P P ++P + + H+PP + Q+PP +Q+ +
Sbjct: 263 ALQAQPP-------IQQPPMQQPQPPPSQALPQQLQQMHHTQHHQPPPQPQQPPVAQN-Q 314
Query: 311 KTKISPFTKSEKPEYIGEAQVL 332
+++ P +S+ + +AQ L
Sbjct: 315 PSQLPP--QSQTQPLVSQAQAL 334
>gi|21312134 mediator complex subunit 15 isoform b [Homo sapiens]
Length = 748
Score = 37.0 bits (84), Expect = 0.027
Identities = 41/202 (20%), Positives = 86/202 (42%), Gaps = 15/202 (7%)
Query: 134 SNRNPQLSSEAWKKELKELASRVAFLTKEDELKKKEKEQKEEPLREQGAKYSAETGRLIP 193
S PQ + + L++ + F ++ +++++Q+++ ++ A+ SA +
Sbjct: 145 STATPQTQLQLQQVALQQQQQQQQFQQQQQAALQQQQQQQQQ--QQFQAQQSAMQQQFQA 202
Query: 194 ASTRAVGRRRSHQGQQSQSSSRHEGVQAFLLQDQEL---LVLELLCQILETDLLSAIQFW 250
+ ++ Q QQ H+ Q Q Q+L L+L Q + Q
Sbjct: 203 VVQQQQQLQQQQQQQQHLIKLHHQNQQQIQQQQQQLQRIAQLQLQQQQQQQQQQQQQQQQ 262
Query: 251 LLYAPPKEKDLALGLLQTAVAQLLPQPLVSIPTEKLLSQLPEVHEPPQEKQEPPCSQSPK 310
L A P + Q + Q P P ++P + + H+PP + Q+PP +Q+ +
Sbjct: 263 ALQAQPP-------IQQPPMQQPQPPPSQALPQQLQQMHHTQHHQPPPQPQQPPVAQN-Q 314
Query: 311 KTKISPFTKSEKPEYIGEAQVL 332
+++ P +S+ + +AQ L
Sbjct: 315 PSQLPP--QSQTQPLVSQAQAL 334
>gi|67782319 spectrin beta isoform b [Homo sapiens]
Length = 2137
Score = 35.8 bits (81), Expect = 0.059
Identities = 27/79 (34%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Query: 143 EAWKKELKELASRVAFLTKEDELKKKEKEQKEEPLREQG-AKYSAETGRLIPASTRAVGR 201
EA++K A R A L K L+ KE++ E P E G + ET P S A
Sbjct: 2052 EAFEKSTASWAERFAALEKPTTLELKERQIAERPAEETGPQEEEGETAGEAPVSHHAATE 2111
Query: 202 RRSHQGQQSQSSSRHEGVQ 220
R S S+ SS E +Q
Sbjct: 2112 RTSPVSLWSRLSSSWESLQ 2130
>gi|92091600 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain
1 isoform c [Homo sapiens]
Length = 1450
Score = 35.0 bits (79), Expect = 0.10
Identities = 19/50 (38%), Positives = 26/50 (52%)
Query: 275 PQPLVSIPTEKLLSQLPEVHEPPQEKQEPPCSQSPKKTKISPFTKSEKPE 324
P+ LVS+PT++ S LP + PPQ + E P S P+ P PE
Sbjct: 165 PRLLVSLPTKEEESLLPSLSSPPQPQSEEPLSTLPQGPPQPPSPPPCPPE 214
Score = 28.5 bits (62), Expect = 9.4
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 13/68 (19%)
Query: 251 LLYAPPKEKDLALGLLQTAVAQLLPQPLVSIPTEKLLSQLPEVHEPPQEKQEPPCSQS-- 308
L+ P KE++ L L + PQP +E+ LS LP+ PPQ PPC
Sbjct: 168 LVSLPTKEEESLLPSLSSP-----PQP----QSEEPLSTLPQ--GPPQPPSPPPCPPEIP 216
Query: 309 PKKTKISP 316
PK ++ P
Sbjct: 217 PKPVRLFP 224
>gi|78000158 eukaryotic translation initiation factor 2B, subunit 4
delta isoform 2 [Homo sapiens]
Length = 523
Score = 34.7 bits (78), Expect = 0.13
Identities = 49/180 (27%), Positives = 74/180 (41%), Gaps = 15/180 (8%)
Query: 159 LTKEDE--LKKKEKEQKEEPLREQGAKYSAETGRLIPASTRAVGRRRSHQGQQSQSSSRH 216
+TKE++ L+K++K+QK++ E+GA+ ETG + A+ VG R Q +
Sbjct: 31 MTKEEKLQLRKEKKQQKKKRKEEKGAE--PETGSAVSAAQCQVGPTRELPESGIQLGTPR 88
Query: 217 EGVQAFLLQDQELLVLELLCQILETDLLSAIQFWLLYAPPKEKDLALGLLQTAVAQLLPQ 276
E V A EL Q E L A + PPK G + V +L
Sbjct: 89 EKVPAG-RSKAELRAERRAKQEAERALKQARKGEQGGPPPKASPSTAGETPSGVKRLPEY 147
Query: 277 PLVSIPTEKLLSQLPEVHEPPQEKQEPPCSQSPKKTKISPFTKSEKPEYIGEAQVLQMHS 336
P V + L + PE + P K +K+S F S P+Y + + Q S
Sbjct: 148 PQVDDLLLRRLVKKPERQQVPTRKD--------YGSKVSLF--SHLPQYSRQNSLTQFMS 197
>gi|71143127 IQ motif and Sec7 domain 3 [Homo sapiens]
Length = 759
Score = 34.3 bits (77), Expect = 0.17
Identities = 17/58 (29%), Positives = 31/58 (53%)
Query: 167 KKEKEQKEEPLREQGAKYSAETGRLIPASTRAVGRRRSHQGQQSQSSSRHEGVQAFLL 224
K E+E++EE E G AE G L S+ + + + G ++ +S+ + +QA +L
Sbjct: 267 KTEEEEEEEETAEVGRGAEAEAGDLEQLSSSSTSTKSAKSGSEASASASKDALQAMIL 324
>gi|151301171 RNA polymerase II transcription factor TAFII140 [Homo
sapiens]
Length = 929
Score = 33.9 bits (76), Expect = 0.22
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
Query: 276 QPLVSIPTEKLLSQLPEVHEPPQEKQEPPCSQSPKKTKISPFTKSEKPEYIGEAQVLQMH 335
+PL SI T+K+ L VH PP SP+ ++P KS+ P A+ L+
Sbjct: 214 EPLSSINTQKIPPMLSPVHVQDSTDLAPP---SPEPPMLAPVAKSQMP----TAKPLETK 266
Query: 336 S-SQNTEKKTSKP 347
S + T+ KTS P
Sbjct: 267 SFTPKTKTKTSSP 279
>gi|56549696 E1A binding protein p400 [Homo sapiens]
Length = 3122
Score = 33.9 bits (76), Expect = 0.22
Identities = 35/155 (22%), Positives = 59/155 (38%), Gaps = 20/155 (12%)
Query: 174 EEPLREQGAKYSAETGRLIPASTRAVGR----RRSHQGQQSQSSSRHEGVQAFLLQDQEL 229
+ P R + S TG +P T R+ Q QQ Q + + Q Q Q+
Sbjct: 2686 QTPARSLVPQVSQATGVQLPGKTITPAHFQLLRQQQQQQQQQQQQQQQQQQQQQQQQQQQ 2745
Query: 230 LVLELLCQILETDLLSAIQFWLLYAPPKEKDLALGLLQTAVAQLLPQPLVSIPTEKLLSQ 289
Q+ + Q +P + K AV +L P+ L+ + +KL Q
Sbjct: 2746 QQTTTTSQVQVPQIQGQAQ-----SPAQIK---------AVGKLTPEHLIKMQKQKL--Q 2789
Query: 290 LPEVHEPPQEKQEPPCSQSPKKTKISPFTKSEKPE 324
+P PPQ + PP + + + S + + P+
Sbjct: 2790 MPPQPPPPQAQSAPPQPTAQVQVQTSQPPQQQSPQ 2824
>gi|58530876 melanoma antigen family C, 1 [Homo sapiens]
Length = 1142
Score = 33.9 bits (76), Expect = 0.22
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 274 LPQPLVSIPTEKLLSQLPEVHEPPQEKQEPPCSQSPKKTKISPFTKSEKPEYIGEAQVLQ 333
L +P+ S + L S L HE PQ E P +QSP ++ +S F S + V
Sbjct: 775 LQRPVSSFFSYTLASLLQSSHESPQSPPEGP-AQSPLQSPVSSFPSSTSSSLSQSSPVSS 833
Query: 334 MHSSQNTEKKTSKPRA 349
SS ++ S P +
Sbjct: 834 FPSSTSSSLSKSSPES 849
>gi|34365793 WNK lysine deficient protein kinase 4 [Homo sapiens]
Length = 1243
Score = 33.5 bits (75), Expect = 0.29
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 275 PQPLVSIPTEKLL------SQLPEVHEPPQEKQEPPCSQSPKKTKISPFTKSEKPEYIGE 328
P PL S+P + S P E E PP P + +++P ++ KP+ +G
Sbjct: 957 PSPLPSLPLPPPVAPGGQESPSPHTAEVESEASPPPARPLPGEARLAPISEEGKPQLVGR 1016
Query: 329 AQV 331
QV
Sbjct: 1017 FQV 1019
>gi|25777600 proteasome 26S non-ATPase subunit 1 [Homo sapiens]
Length = 953
Score = 33.5 bits (75), Expect = 0.29
Identities = 27/120 (22%), Positives = 53/120 (44%), Gaps = 10/120 (8%)
Query: 88 VTHIQDLTGKPVCVVR-DFPAPLPESTVFSGCQMGIPTISVPIGDPQSNRNPQLSS---- 142
++H L P CV+ + +P+ S C+ P+ P+ ++S+
Sbjct: 775 LSHFLSLAYTPTCVIGLNKDLKMPKVQYKSNCKPSTFAYPAPLEVPKEKEKEKVSTAVLS 834
Query: 143 ---EAWKKELKELASRVAFLTKEDELKKKEKEQKEEPLREQGAKYSAETGRLIPASTRAV 199
+A KKE ++ + ++ KK+EKE+K+EP E + R++PA + +
Sbjct: 835 ITAKAKKKEKEKEKKEEEKMEVDEAEKKEEKEKKKEP--EPNFQLLDNPARVMPAQLKVL 892
>gi|21396500 HIRA interacting protein 3 [Homo sapiens]
Length = 556
Score = 33.1 bits (74), Expect = 0.38
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Query: 131 DPQSNRNPQLSSEAWKKELKELASRVAFLTKEDELKKKEKEQKEEPLREQGAKYSAETGR 190
+P ++ K LKE E+E+ ++KEQ+EE + E+ + E G
Sbjct: 202 EPVQRTAKKVEGNKGTKSLKESEQE-----SEEEILAQKKEQREEEVEEEEKEEDEEKGD 256
Query: 191 LIPASTRAVGRRRSHQGQQS 210
P TR+ GRR+S + ++S
Sbjct: 257 WKP-RTRSNGRRKSAREERS 275
>gi|167614488 TBC1 domain family, member 10B [Homo sapiens]
Length = 808
Score = 33.1 bits (74), Expect = 0.38
Identities = 26/113 (23%), Positives = 50/113 (44%), Gaps = 8/113 (7%)
Query: 106 PAPLPESTVFSGCQMGIPTISVPIGDPQSNRNPQLSSEAWKKELKELASRVAFLTKEDEL 165
PAP P T G +P+ P N P SS+ +K+ KE + K+++
Sbjct: 690 PAPGPVVTA-EGLHPSLPS-------PTGNSTPLGSSKETRKQEKERQKQEKERQKQEKE 741
Query: 166 KKKEKEQKEEPLREQGAKYSAETGRLIPASTRAVGRRRSHQGQQSQSSSRHEG 218
++KE++++E+ +Q + + +A GR+ S + + H+G
Sbjct: 742 REKERQKQEKEREKQEKEREKQEKERQKQEKKAQGRKLSLRRKADGPPGPHDG 794
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 33.1 bits (74), Expect = 0.38
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 281 IPTEKLLSQLPEVHEPPQEKQEPPCSQS--PKKTKISPFTKSEKPEYIGEAQVLQMHSSQ 338
IP+ K+ SQ E PP + SQS P K+SPF P +++++ H
Sbjct: 778 IPSSKVQSQAEEKTTPPLKTDSAKPSQSFPPTGEKVSPFDSKAIPRPASDSKIIS-HPGP 836
Query: 339 NTEKKTSK 346
++E K K
Sbjct: 837 SSESKGQK 844
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 33.1 bits (74), Expect = 0.38
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 281 IPTEKLLSQLPEVHEPPQEKQEPPCSQS--PKKTKISPFTKSEKPEYIGEAQVLQMHSSQ 338
IP+ K+ SQ E PP + SQS P K+SPF P +++++ H
Sbjct: 778 IPSSKVQSQAEEKTTPPLKTDSAKPSQSFPPTGEKVSPFDSKAIPRPASDSKIIS-HPGP 836
Query: 339 NTEKKTSK 346
++E K K
Sbjct: 837 SSESKGQK 844
>gi|37574601 zinc finger protein 232 [Homo sapiens]
Length = 444
Score = 33.1 bits (74), Expect = 0.38
Identities = 32/102 (31%), Positives = 46/102 (45%), Gaps = 18/102 (17%)
Query: 228 ELLVLELLCQILETDLLSAIQFWLLYAPPKEKDLALGLLQTAVAQLLPQPLVSIPTEKLL 287
E LVLE IL +L Q W+ PK + A+ +L+ L P+P V P
Sbjct: 120 EFLVLEQFLTILPEEL----QSWVRGHHPKSGEEAVTVLEDLEKGLEPEPQVPGPAHG-- 173
Query: 288 SQLPEVHEPPQEKQEPPCSQ-------SPKKTKISPFTKSEK 322
P EP ++K+ +Q PK+T+ PF KSE+
Sbjct: 174 ---PAQEEPWEKKESLGAAQEALSIQLQPKETQ--PFPKSEQ 210
>gi|55749715 hypothetical protein LOC57536 [Homo sapiens]
Length = 577
Score = 32.7 bits (73), Expect = 0.50
Identities = 26/104 (25%), Positives = 45/104 (43%)
Query: 131 DPQSNRNPQLSSEAWKKELKELASRVAFLTKEDELKKKEKEQKEEPLREQGAKYSAETGR 190
D Q++ ++ S + K E R+A L KE +EKE EE L+ + + + +
Sbjct: 77 DEQNSCRGEIKSASLKDLCLEDKRRIANLIKELARVSEEKEVTEERLKAEQESFEKKIRQ 136
Query: 191 LIPASTRAVGRRRSHQGQQSQSSSRHEGVQAFLLQDQELLVLEL 234
L + + R + Q Q + Q +L + QE L + L
Sbjct: 137 LEEQNELIIKEREALQLQYRECQELLSLYQKYLSEQQEKLTMSL 180
>gi|40538794 coiled-coil domain containing 21 [Homo sapiens]
Length = 762
Score = 32.7 bits (73), Expect = 0.50
Identities = 38/157 (24%), Positives = 67/157 (42%), Gaps = 6/157 (3%)
Query: 122 IPTISVPIGDPQSNRNPQLSSEAWKKELKELASRVAFLTKEDELKKKEKEQKEEPLREQG 181
+PT+ D Q SE EL+E + + L +E + +EKE + E LR++
Sbjct: 486 LPTLE----DHQKQSQQLKDSELKSTELQEKVTELESLLEETQAICREKEIQLESLRQRE 541
Query: 182 AKYSAETGRLIPASTRAVGRRRSHQGQQSQSSSRHEGVQAFL-LQDQELLVLELLCQILE 240
A++S+ L + + + R++ +Q + Q Q++ L Q LE
Sbjct: 542 AEFSSAGHSLQDKQSVEETSGEGPEVEMESWQKRYDSLQKIVEKQQQKMDQLRSQVQSLE 601
Query: 241 TDLLSAI-QFWLLYAPPKEKDLALGLLQTAVAQLLPQ 276
++ L + +D AL L+TAV +L Q
Sbjct: 602 QEVAQEEGTSQALREEAQRRDSALQQLRTAVKELSVQ 638
>gi|226958575 RAS protein activator like 2 isoform 2 [Homo sapiens]
Length = 1280
Score = 32.3 bits (72), Expect = 0.65
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 279 VSIPTEKLLSQLPEVHEPPQEKQEPPCSQSPKKTKISPFTKSEKPEYIGEA 329
VS+P+E Q PE K E P +SP++ IS + SEKP + A
Sbjct: 133 VSVPSE---GQFPEYPPEGATKLEVPAERSPRRRSISGTSTSEKPNSMDTA 180
>gi|124107614 PR domain containing 13 [Homo sapiens]
Length = 707
Score = 32.0 bits (71), Expect = 0.85
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 12/55 (21%)
Query: 74 HHSFFSRHHPHPQHVTHIQDLTGKPVCVVRDFPAPLPESTVFSGCQMGIPTISVP 128
HH + HH HP+ + L G P P P P SG G P +SVP
Sbjct: 353 HHHHHAHHHHHPKCL-----LAGDP-------PPPPPPGLPCSGALRGFPLLSVP 395
>gi|224458301 family with sequence similarity 186, member A [Homo
sapiens]
Length = 2351
Score = 31.6 bits (70), Expect = 1.1
Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 5/126 (3%)
Query: 133 QSNRNPQLSSEAWKKELKELASRVAFLTKEDELKKKEKEQKEEPLREQGAKYSAETGRLI 192
Q ++ E WK+E K+ + A E E K+K++ Q+EE L + + E G
Sbjct: 877 QQSQKQWQEEEMWKEEQKQATPKQA----EQEEKQKQRGQEEEELPKSSLQ-RLEEGTQK 931
Query: 193 PASTRAVGRRRSHQGQQSQSSSRHEGVQAFLLQDQELLVLELLCQILETDLLSAIQFWLL 252
+ + + + Q +Q Q ++H G + +E E + LE + + Q +
Sbjct: 932 MKTQGLLLEKENGQMRQIQKEAKHLGPHRRREKGKEKQKPERGLEDLERQIKTKDQMQMK 991
Query: 253 YAPPKE 258
PKE
Sbjct: 992 ETQPKE 997
>gi|67782321 spectrin beta isoform a [Homo sapiens]
Length = 2328
Score = 31.6 bits (70), Expect = 1.1
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 143 EAWKKELKELASRVAFLTKEDELKKKEKEQKEEPLREQG-AKYSAETGRLIPASTRAVGR 201
EA++K A R A L K L+ KE++ E P E G + ET P S A
Sbjct: 2052 EAFEKSTASWAERFAALEKPTTLELKERQIAERPAEETGPQEEEGETAGEAPVSHHAATE 2111
Query: 202 RRS 204
R S
Sbjct: 2112 RTS 2114
>gi|20070266 RAS-like GTP-binding protein REM [Homo sapiens]
Length = 298
Score = 31.6 bits (70), Expect = 1.1
Identities = 43/176 (24%), Positives = 67/176 (38%), Gaps = 25/176 (14%)
Query: 52 IRRALRTPKPQTPGTYCFGRLSHHSFFSRHHPHPQHVTHIQDLTGKPVCVVRDFPAPLPE 111
+ R TP P +P + GRLS HP + T KP D+ + E
Sbjct: 13 LHRRASTPLPLSPRGHQPGRLSTVPSTQSQHPRLGQSASLNPPTQKPSPAPDDWSS---E 69
Query: 112 STVFSGCQMGIPTISVPIGDPQSNRNPQLSSEAWKKEL-------KELASRVAFLTKED- 163
S+ G + + V +GDP + S A K+E +++ R + ED
Sbjct: 70 SSDSEGSWEALYRV-VLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDT 128
Query: 164 --------ELKKKEKEQKEEPLREQGAKY-----SAETGRLIPASTRAVGRRRSHQ 206
E +K +K +E + G+ Y A+ G AS + RR+HQ
Sbjct: 129 TLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQ 184
>gi|195947367 golgi autoantigen, golgin subfamily a, 8B [Homo
sapiens]
Length = 603
Score = 31.2 bits (69), Expect = 1.5
Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 7/117 (5%)
Query: 129 IGDPQSNRNPQLSSEA----WKKELKELASRVAFLTKEDELKKKEKEQKEEPLREQGAKY 184
+ +P P +SSE +KEL+ +A + + ++ ++E LREQ +
Sbjct: 283 MAEPLPPDAPAVSSEVELQDLRKELERVAGELQAQVENNQCISLLNRGQKERLREQEERL 342
Query: 185 SAETGRLIPASTRAVGRRRSHQGQQSQSSSRHEGVQAFLLQDQELLVLELLCQILET 241
+ RL R ++ + Q +HE A L+ Q + E L Q++ET
Sbjct: 343 QEQQERLREREKRL---QQLAEPQSDLEELKHENKSALQLEQQVKELQEKLGQVMET 396
>gi|31083099 golgi autoantigen, golgin subfamily a, 8A [Homo
sapiens]
Length = 603
Score = 31.2 bits (69), Expect = 1.5
Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 7/117 (5%)
Query: 129 IGDPQSNRNPQLSSEA----WKKELKELASRVAFLTKEDELKKKEKEQKEEPLREQGAKY 184
+ +P P +SSE +KEL+ +A + + ++ ++E LREQ +
Sbjct: 283 MAEPLPPDAPAVSSEVELQDLRKELERVAGELQAQVENNQCISLLNRGQKERLREQEERL 342
Query: 185 SAETGRLIPASTRAVGRRRSHQGQQSQSSSRHEGVQAFLLQDQELLVLELLCQILET 241
+ RL R ++ + Q +HE A L+ Q + E L Q++ET
Sbjct: 343 QEQQERLREREKRL---QQLAEPQSDLEELKHENKSALQLEQQVKELQEKLGQVMET 396
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.130 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,811,945
Number of Sequences: 37866
Number of extensions: 852832
Number of successful extensions: 4761
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 138
Number of HSP's that attempted gapping in prelim test: 4425
Number of HSP's gapped (non-prelim): 439
length of query: 351
length of database: 18,247,518
effective HSP length: 103
effective length of query: 248
effective length of database: 14,347,320
effective search space: 3558135360
effective search space used: 3558135360
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.