Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 153251811
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|153251811 hypothetical protein LOC55199 isoform 3 [Homo
sapiens]
(158 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|153251811 hypothetical protein LOC55199 isoform 3 [Homo sapiens] 333 3e-92
gi|153251796 hypothetical protein LOC55199 isoform 1 [Homo sapiens] 265 1e-71
gi|24211015 hypothetical protein LOC55199 isoform 2 [Homo sapiens] 262 1e-70
gi|42476337 hypothetical protein LOC196483 isoform 1 [Homo sapiens] 152 1e-37
gi|42475946 hypothetical protein LOC196483 isoform 2 [Homo sapiens] 151 2e-37
gi|212549593 hypothetical protein LOC653333 [Homo sapiens] 147 5e-36
gi|134133220 hypothetical protein LOC85002 [Homo sapiens] 146 6e-36
gi|239754822 PREDICTED: hypothetical protein LOC653333 [Homo sap... 142 1e-34
gi|239758137 PREDICTED: hypothetical protein [Homo sapiens] 56 1e-08
gi|169217659 PREDICTED: similar to ectonucleotide pyrophosphatas... 56 1e-08
gi|169167316 PREDICTED: similar to ectonucleotide pyrophosphatas... 56 1e-08
gi|6912650 semaphorin 3E [Homo sapiens] 32 0.23
gi|5454048 semaphorin 3C [Homo sapiens] 32 0.23
gi|60593040 keratin associated protein 5-10 [Homo sapiens] 30 0.66
gi|21717816 solute carrier family 15, member 4 [Homo sapiens] 30 0.86
gi|20357568 aminoadipate-semialdehyde dehydrogenase-phosphopante... 30 0.86
gi|60593038 keratin associated protein 5-4 [Homo sapiens] 30 1.1
gi|170932550 FLT3-interacting zinc finger 1 [Homo sapiens] 29 1.5
gi|5174673 semaphorin 3A precursor [Homo sapiens] 29 1.9
gi|209364594 acyl-Coenzyme A binding domain containing 4 isoform... 28 2.5
gi|209364589 acyl-Coenzyme A binding domain containing 4 isoform... 28 2.5
gi|24234744 semaphorin 6D isoform 5 precursor [Homo sapiens] 28 3.3
gi|24234741 semaphorin 6D isoform 4 precursor [Homo sapiens] 28 3.3
gi|24234738 semaphorin 6D isoform 3 precursor [Homo sapiens] 28 3.3
gi|24234735 semaphorin 6D isoform 2 precursor [Homo sapiens] 28 3.3
gi|126012571 heparan sulfate proteoglycan 2 [Homo sapiens] 28 4.3
gi|21687119 spermatogenesis associated 18 homolog [Homo sapiens] 28 4.3
gi|45439370 TAO kinase 1 [Homo sapiens] 28 4.3
gi|24234729 semaphorin 6D isoform 1 precursor [Homo sapiens] 27 5.6
gi|54607089 semaphorin 3B isoform 2 precursor [Homo sapiens] 27 5.6
>gi|153251811 hypothetical protein LOC55199 isoform 3 [Homo sapiens]
Length = 158
Score = 333 bits (855), Expect = 3e-92
Identities = 158/158 (100%), Positives = 158/158 (100%)
Query: 1 MAPEENAGSELLLQSFKRRFLAARALRSFRWQSLEAKLRDSSDSELLRDILQKTVKHPVC 60
MAPEENAGSELLLQSFKRRFLAARALRSFRWQSLEAKLRDSSDSELLRDILQKTVKHPVC
Sbjct: 1 MAPEENAGSELLLQSFKRRFLAARALRSFRWQSLEAKLRDSSDSELLRDILQKTVKHPVC 60
Query: 61 VKHPPSVKYARCFLSELIKKTCCIAQKPSCRWSGSCGGWLPAGSTSGLLNSTWPLPSATQ 120
VKHPPSVKYARCFLSELIKKTCCIAQKPSCRWSGSCGGWLPAGSTSGLLNSTWPLPSATQ
Sbjct: 61 VKHPPSVKYARCFLSELIKKTCCIAQKPSCRWSGSCGGWLPAGSTSGLLNSTWPLPSATQ 120
Query: 121 RCASCSPPSYAGLGSDGKRKLIMTRNCFPTESTWRWQS 158
RCASCSPPSYAGLGSDGKRKLIMTRNCFPTESTWRWQS
Sbjct: 121 RCASCSPPSYAGLGSDGKRKLIMTRNCFPTESTWRWQS 158
>gi|153251796 hypothetical protein LOC55199 isoform 1 [Homo sapiens]
Length = 165
Score = 265 bits (677), Expect = 1e-71
Identities = 135/168 (80%), Positives = 138/168 (82%), Gaps = 13/168 (7%)
Query: 1 MAPEENAGSELLLQSFKRRFLAARALRSFRWQSLEAKLRDSSDSELLRDILQKTVKHPVC 60
MAPEENAGSELLLQSFKRRFLAARALRSFRWQSLEAKLRDSSDSELLRDILQK H
Sbjct: 1 MAPEENAGSELLLQSFKRRFLAARALRSFRWQSLEAKLRDSSDSELLRDILQK---HEAV 57
Query: 61 VKHPPSVKYARCFLSELIKK----------TCCIAQKPSCRWSGSCGGWLPAGSTSGLLN 110
P Y + + K+ TCCIAQKPSCRWSGSCGGWLPAGSTSGLLN
Sbjct: 58 HTEPLDELYEVLVETLMAKESTQGHRSYLLTCCIAQKPSCRWSGSCGGWLPAGSTSGLLN 117
Query: 111 STWPLPSATQRCASCSPPSYAGLGSDGKRKLIMTRNCFPTESTWRWQS 158
STWPLPSATQRCASCSPPSYAGLGSDGKRKLIMTRNCFPTESTWRWQS
Sbjct: 118 STWPLPSATQRCASCSPPSYAGLGSDGKRKLIMTRNCFPTESTWRWQS 165
>gi|24211015 hypothetical protein LOC55199 isoform 2 [Homo sapiens]
Length = 131
Score = 262 bits (669), Expect = 1e-70
Identities = 131/158 (82%), Positives = 131/158 (82%), Gaps = 27/158 (17%)
Query: 1 MAPEENAGSELLLQSFKRRFLAARALRSFRWQSLEAKLRDSSDSELLRDILQKTVKHPVC 60
MAPEENAGSELLLQSFKRRFLAARALRSFRWQSLEAKLRDSSDSELLRDILQKT
Sbjct: 1 MAPEENAGSELLLQSFKRRFLAARALRSFRWQSLEAKLRDSSDSELLRDILQKT------ 54
Query: 61 VKHPPSVKYARCFLSELIKKTCCIAQKPSCRWSGSCGGWLPAGSTSGLLNSTWPLPSATQ 120
CCIAQKPSCRWSGSCGGWLPAGSTSGLLNSTWPLPSATQ
Sbjct: 55 ---------------------CCIAQKPSCRWSGSCGGWLPAGSTSGLLNSTWPLPSATQ 93
Query: 121 RCASCSPPSYAGLGSDGKRKLIMTRNCFPTESTWRWQS 158
RCASCSPPSYAGLGSDGKRKLIMTRNCFPTESTWRWQS
Sbjct: 94 RCASCSPPSYAGLGSDGKRKLIMTRNCFPTESTWRWQS 131
>gi|42476337 hypothetical protein LOC196483 isoform 1 [Homo
sapiens]
Length = 330
Score = 152 bits (384), Expect = 1e-37
Identities = 76/88 (86%), Positives = 80/88 (90%)
Query: 1 MAPEENAGSELLLQSFKRRFLAARALRSFRWQSLEAKLRDSSDSELLRDILQKTVKHPVC 60
MAPEENAG+ELLLQSF+RRFLAAR LRSF WQSLEAKLRDSSDSELLRDIL KTVKHPVC
Sbjct: 1 MAPEENAGTELLLQSFERRFLAARTLRSFPWQSLEAKLRDSSDSELLRDILHKTVKHPVC 60
Query: 61 VKHPPSVKYARCFLSELIKKTCCIAQKP 88
VKHPPSVKYARCFLSELIKK + +P
Sbjct: 61 VKHPPSVKYARCFLSELIKKHEAVHTEP 88
>gi|42475946 hypothetical protein LOC196483 isoform 2 [Homo
sapiens]
Length = 296
Score = 151 bits (382), Expect = 2e-37
Identities = 75/80 (93%), Positives = 77/80 (96%)
Query: 1 MAPEENAGSELLLQSFKRRFLAARALRSFRWQSLEAKLRDSSDSELLRDILQKTVKHPVC 60
MAPEENAG+ELLLQSF+RRFLAAR LRSF WQSLEAKLRDSSDSELLRDIL KTVKHPVC
Sbjct: 1 MAPEENAGTELLLQSFERRFLAARTLRSFPWQSLEAKLRDSSDSELLRDILHKTVKHPVC 60
Query: 61 VKHPPSVKYARCFLSELIKK 80
VKHPPSVKYARCFLSELIKK
Sbjct: 61 VKHPPSVKYARCFLSELIKK 80
>gi|212549593 hypothetical protein LOC653333 [Homo sapiens]
Length = 330
Score = 147 bits (370), Expect = 5e-36
Identities = 73/88 (82%), Positives = 78/88 (88%)
Query: 1 MAPEENAGSELLLQSFKRRFLAARALRSFRWQSLEAKLRDSSDSELLRDILQKTVKHPVC 60
MAPEENAG+ELLLQ F+RRFLA R LRSF WQSLEAKLRDSSDSELLRDILQKTV+HPVC
Sbjct: 1 MAPEENAGTELLLQGFERRFLAVRTLRSFPWQSLEAKLRDSSDSELLRDILQKTVRHPVC 60
Query: 61 VKHPPSVKYARCFLSELIKKTCCIAQKP 88
VKHPPSVKYA CFLSELIKK + +P
Sbjct: 61 VKHPPSVKYAWCFLSELIKKHEAVHTEP 88
>gi|134133220 hypothetical protein LOC85002 [Homo sapiens]
Length = 296
Score = 146 bits (369), Expect = 6e-36
Identities = 72/81 (88%), Positives = 76/81 (93%)
Query: 1 MAPEENAGSELLLQSFKRRFLAARALRSFRWQSLEAKLRDSSDSELLRDILQKTVKHPVC 60
MAPEENAG+ELLLQ F+RRFLA R LRSF WQSLEAKLRDSSDSELLRDILQKTV+HPVC
Sbjct: 1 MAPEENAGTELLLQGFERRFLAVRTLRSFPWQSLEAKLRDSSDSELLRDILQKTVRHPVC 60
Query: 61 VKHPPSVKYARCFLSELIKKT 81
VKHPPSVKYA CFLSELIKK+
Sbjct: 61 VKHPPSVKYAWCFLSELIKKS 81
>gi|239754822 PREDICTED: hypothetical protein LOC653333 [Homo
sapiens]
Length = 329
Score = 142 bits (358), Expect = 1e-34
Identities = 71/88 (80%), Positives = 77/88 (87%)
Query: 1 MAPEENAGSELLLQSFKRRFLAARALRSFRWQSLEAKLRDSSDSELLRDILQKTVKHPVC 60
M PEENAG++LLLQSF+ RFL AR LRSF WQSLEAKLRDSSDSELLRDILQKTV+HPVC
Sbjct: 1 MTPEENAGTKLLLQSFESRFLVARTLRSFPWQSLEAKLRDSSDSELLRDILQKTVRHPVC 60
Query: 61 VKHPPSVKYARCFLSELIKKTCCIAQKP 88
VK PPSVKYARCFLSELIKK + +P
Sbjct: 61 VKPPPSVKYARCFLSELIKKHEAVHTEP 88
>gi|239758137 PREDICTED: hypothetical protein [Homo sapiens]
Length = 89
Score = 56.2 bits (134), Expect = 1e-08
Identities = 26/32 (81%), Positives = 28/32 (87%)
Query: 1 MAPEENAGSELLLQSFKRRFLAARALRSFRWQ 32
MAPEENAG+ELLLQ F+RRFLA R LRSF WQ
Sbjct: 25 MAPEENAGTELLLQGFERRFLAVRTLRSFPWQ 56
>gi|169217659 PREDICTED: similar to ectonucleotide
pyrophosphatase/phosphodiesterase 5 [Homo sapiens]
Length = 542
Score = 55.8 bits (133), Expect = 1e-08
Identities = 26/32 (81%), Positives = 29/32 (90%)
Query: 1 MAPEENAGSELLLQSFKRRFLAARALRSFRWQ 32
MAPEENAG+EL LQ F+RRFLAAR+LRSF WQ
Sbjct: 416 MAPEENAGTELWLQGFERRFLAARSLRSFPWQ 447
>gi|169167316 PREDICTED: similar to ectonucleotide
pyrophosphatase/phosphodiesterase 5 [Homo sapiens]
Length = 542
Score = 55.8 bits (133), Expect = 1e-08
Identities = 26/32 (81%), Positives = 29/32 (90%)
Query: 1 MAPEENAGSELLLQSFKRRFLAARALRSFRWQ 32
MAPEENAG+EL LQ F+RRFLAAR+LRSF WQ
Sbjct: 416 MAPEENAGTELWLQGFERRFLAARSLRSFPWQ 447
>gi|6912650 semaphorin 3E [Homo sapiens]
Length = 775
Score = 32.0 bits (71), Expect = 0.23
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 67 VKYARCFLSELIKKTCCIAQKPSCRWSG-SCGGWLPAGS 104
V++ C + CC+A+ P C W G SC + P G+
Sbjct: 514 VRFHHCDMYGSACADCCLARDPYCAWDGISCSRYYPTGT 552
>gi|5454048 semaphorin 3C [Homo sapiens]
Length = 751
Score = 32.0 bits (71), Expect = 0.23
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 67 VKYARCFLSELIKKTCCIAQKPSCRWSG-SCGGWLPAG 103
V RC + CC+A+ P C W G SC + P G
Sbjct: 509 VSLHRCHIYGTACADCCLARDPYCAWDGHSCSRFYPTG 546
>gi|60593040 keratin associated protein 5-10 [Homo sapiens]
Length = 202
Score = 30.4 bits (67), Expect = 0.66
Identities = 22/63 (34%), Positives = 23/63 (36%), Gaps = 2/63 (3%)
Query: 79 KKTCCIAQKPSCRWSGSCGGWL-PAGSTSGLLNSTWPLPSATQRCASCSPPSYAGLGSDG 137
K CC SC GSCGG GS G + C SC S G GS G
Sbjct: 50 KPVCCCVPACSCSSCGSCGGSKGDCGSCGGSKGGCGSCGGSKGGCGSCG-GSKGGCGSCG 108
Query: 138 KRK 140
K
Sbjct: 109 GSK 111
>gi|21717816 solute carrier family 15, member 4 [Homo sapiens]
Length = 577
Score = 30.0 bits (66), Expect = 0.86
Identities = 15/26 (57%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Query: 108 LLNSTWPLPSATQRCASCSPPSYAGL 133
LLN T P P A RC CSP ++AGL
Sbjct: 138 LLNCTAPGPDAAARC--CSPATFAGL 161
>gi|20357568 aminoadipate-semialdehyde
dehydrogenase-phosphopantetheinyl transferase [Homo
sapiens]
Length = 309
Score = 30.0 bits (66), Expect = 0.86
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 79 KKTCCIAQKPSCRWSGSCGGWLPA 102
K+ C + RW+ SCG WLP+
Sbjct: 6 KRFCLVPSMEGVRWAFSCGTWLPS 29
>gi|60593038 keratin associated protein 5-4 [Homo sapiens]
Length = 288
Score = 29.6 bits (65), Expect = 1.1
Identities = 22/63 (34%), Positives = 23/63 (36%), Gaps = 2/63 (3%)
Query: 79 KKTCCIAQKPSCRWSGSCGGWLPA-GSTSGLLNSTWPLPSATQRCASCSPPSYAGLGSDG 137
K CC SC GSCGG GS G + C SC S G GS G
Sbjct: 57 KPVCCCVPACSCSSCGSCGGSKGGYGSCGGSKGGCVSCGGSKGGCGSCG-GSKGGCGSCG 115
Query: 138 KRK 140
K
Sbjct: 116 GSK 118
>gi|170932550 FLT3-interacting zinc finger 1 [Homo sapiens]
Length = 496
Score = 29.3 bits (64), Expect = 1.5
Identities = 29/99 (29%), Positives = 40/99 (40%), Gaps = 5/99 (5%)
Query: 34 LEAKLRDSSDSELLRDILQKTVKHPVCVKHPPSVKYARCFLSELIKKTCCIAQKPSCRWS 93
L +LR SS S L R + ++ H + P LS C + C S
Sbjct: 110 LVCELRFSSRSSLGRHLKRQ---HRGVLPSPLQPGPGLPALSAPCSVCCNVGPCSVCGGS 166
Query: 94 GSCGGWLPAGSTSGLLNSTWPLPSATQRCASCSPPSYAG 132
G+ GG P G+ +GL +W L A A+ PP G
Sbjct: 167 GAGGGEGPEGAGAGL--GSWGLAEAAAAAAASLPPFACG 203
>gi|5174673 semaphorin 3A precursor [Homo sapiens]
Length = 771
Score = 28.9 bits (63), Expect = 1.9
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 71 RCFLSELIKKTCCIAQKPSCRWSGS-CGGWLP 101
RC + CC+A+ P C W GS C + P
Sbjct: 516 RCDIYGKACAECCLARDPYCAWDGSACSRYFP 547
>gi|209364594 acyl-Coenzyme A binding domain containing 4 isoform 1
[Homo sapiens]
Length = 341
Score = 28.5 bits (62), Expect = 2.5
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 80 KTCCIAQKPSCRWSGSCGGWLPAGSTSGLLNSTWPLPSATQRC--ASCSPPSYAG 132
+ C + CR +C G L G + G + PL S RC +SC P S +G
Sbjct: 254 RRACRRCRRGCRAWRACPGPLSRGRSPGPVLGHGPLGSRGPRCSSSSCGPSSSSG 308
>gi|209364589 acyl-Coenzyme A binding domain containing 4 isoform 1
[Homo sapiens]
Length = 341
Score = 28.5 bits (62), Expect = 2.5
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 80 KTCCIAQKPSCRWSGSCGGWLPAGSTSGLLNSTWPLPSATQRC--ASCSPPSYAG 132
+ C + CR +C G L G + G + PL S RC +SC P S +G
Sbjct: 254 RRACRRCRRGCRAWRACPGPLSRGRSPGPVLGHGPLGSRGPRCSSSSCGPSSSSG 308
>gi|24234744 semaphorin 6D isoform 5 precursor [Homo sapiens]
Length = 597
Score = 28.1 bits (61), Expect = 3.3
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 67 VKYARCFLSELIKKTCCIAQKPSCRW--SGSCGGWLPAGSTSGLLNST 112
+ +RC KK+C ++ P C W GSCG P G T
Sbjct: 510 IPLSRCERYGSCKKSCIASRDPYCGWLSQGSCGRVTPGMLAEGYEQDT 557
>gi|24234741 semaphorin 6D isoform 4 precursor [Homo sapiens]
Length = 1073
Score = 28.1 bits (61), Expect = 3.3
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 67 VKYARCFLSELIKKTCCIAQKPSCRW--SGSCGGWLPAGSTSGLLNST 112
+ +RC KK+C ++ P C W GSCG P G T
Sbjct: 510 IPLSRCERYGSCKKSCIASRDPYCGWLSQGSCGRVTPGMLAEGYEQDT 557
>gi|24234738 semaphorin 6D isoform 3 precursor [Homo sapiens]
Length = 1017
Score = 28.1 bits (61), Expect = 3.3
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 67 VKYARCFLSELIKKTCCIAQKPSCRW--SGSCGGWLPAGSTSGLLNST 112
+ +RC KK+C ++ P C W GSCG P G T
Sbjct: 510 IPLSRCERYGSCKKSCIASRDPYCGWLSQGSCGRVTPGMLAEGYEQDT 557
>gi|24234735 semaphorin 6D isoform 2 precursor [Homo sapiens]
Length = 998
Score = 28.1 bits (61), Expect = 3.3
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 67 VKYARCFLSELIKKTCCIAQKPSCRW--SGSCGGWLPAGSTSGLLNST 112
+ +RC KK+C ++ P C W GSCG P G T
Sbjct: 510 IPLSRCERYGSCKKSCIASRDPYCGWLSQGSCGRVTPGMLAEGYEQDT 557
>gi|126012571 heparan sulfate proteoglycan 2 [Homo sapiens]
Length = 4391
Score = 27.7 bits (60), Expect = 4.3
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 54 TVKHPVCVKHPPSVKYARCFLSELIKKTCCIAQKPSCRWSGSCGGWLPA 102
T+ PV HPP + L+E + + + P+ W+G GG LPA
Sbjct: 1862 TLSAPVVSIHPPQLTVQPGQLAEF-RCSATGSPTPTLEWTGGPGGQLPA 1909
>gi|21687119 spermatogenesis associated 18 homolog [Homo sapiens]
Length = 538
Score = 27.7 bits (60), Expect = 4.3
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 38 LRDSSDSELLRDILQKTVKHPVCVKHPPSVKYARCFLSELIKKTCCIA 85
L DS S + D+++ +P + PP V + C LS+ I++ CCIA
Sbjct: 385 LYDSQSS--VNDVIRAMNVNPK-ISFPPVVDF--CLLSDFIQEICCIA 427
>gi|45439370 TAO kinase 1 [Homo sapiens]
Length = 1001
Score = 27.7 bits (60), Expect = 4.3
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 44 SELLRDILQKTVKHPVCVKHPPSVKYARCFLSE 76
+E +DI+ K VK +KHP S++Y C+L E
Sbjct: 67 TEKWQDII-KEVKFLQRIKHPNSIEYKGCYLRE 98
>gi|24234729 semaphorin 6D isoform 1 precursor [Homo sapiens]
Length = 1011
Score = 27.3 bits (59), Expect = 5.6
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 67 VKYARCFLSELIKKTCCIAQKPSCRW--SGSCGGWLP 101
+ +RC KK+C ++ P C W GSCG P
Sbjct: 510 IPLSRCERYGSCKKSCIASRDPYCGWLSQGSCGRVTP 546
>gi|54607089 semaphorin 3B isoform 2 precursor [Homo sapiens]
Length = 748
Score = 27.3 bits (59), Expect = 5.6
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 71 RCFLSELIKKTCCIAQKPSCRWSG-SCGGWLPA 102
RC + CC+A+ P C W G +C + P+
Sbjct: 514 RCAAHGRVCTECCLARDPYCAWDGVACTRFQPS 546
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.131 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,863,719
Number of Sequences: 37866
Number of extensions: 307541
Number of successful extensions: 903
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 879
Number of HSP's gapped (non-prelim): 45
length of query: 158
length of database: 18,247,518
effective HSP length: 94
effective length of query: 64
effective length of database: 14,688,114
effective search space: 940039296
effective search space used: 940039296
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.