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Search of human proteins with 151101384
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|151101384 coenzyme Q10 homolog A isoform a [Homo sapiens]
(247 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|151101384 coenzyme Q10 homolog A isoform a [Homo sapiens] 504 e-143
gi|151101386 coenzyme Q10 homolog A isoform b [Homo sapiens] 408 e-114
gi|13376737 coenzyme Q10 homolog B [Homo sapiens] 300 6e-82
gi|82546824 forkhead box K1 [Homo sapiens] 42 6e-04
gi|20986497 mitogen-activated protein kinase 7 isoform 1 [Homo s... 41 8e-04
gi|209529736 mitogen-activated protein kinase 7 isoform 1 [Homo ... 41 8e-04
gi|209529734 mitogen-activated protein kinase 7 isoform 1 [Homo ... 41 8e-04
gi|20986499 mitogen-activated protein kinase 7 isoform 2 [Homo s... 41 8e-04
gi|169167066 PREDICTED: hypothetical protein [Homo sapiens] 38 0.009
gi|113416187 PREDICTED: hypothetical protein [Homo sapiens] 38 0.009
gi|113415691 PREDICTED: hypothetical protein [Homo sapiens] 38 0.009
gi|122937271 WAS protein homolog associated with actin, golgi me... 37 0.016
gi|157817023 Cdc2-related kinase, arginine/serine-rich isoform 1... 36 0.035
gi|38788260 bromodomain PHD finger transcription factor isoform ... 35 0.060
gi|38788274 bromodomain PHD finger transcription factor isoform ... 35 0.060
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa... 34 0.10
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 34 0.10
gi|153792074 proline rich 12 [Homo sapiens] 34 0.13
gi|55956910 meningioma 1 [Homo sapiens] 33 0.18
gi|40255245 G protein-coupled receptor 51 [Homo sapiens] 33 0.23
gi|40353727 synaptopodin isoform A [Homo sapiens] 33 0.23
gi|116805350 homeo box (H6 family) 1 [Homo sapiens] 33 0.23
gi|116008442 zinc finger CCCH-type containing 13 [Homo sapiens] 33 0.23
gi|169163027 PREDICTED: similar to Putative acrosin-like proteas... 33 0.30
gi|148613878 acrosin precursor [Homo sapiens] 33 0.30
gi|134142824 forkhead box D2 [Homo sapiens] 33 0.30
gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 32 0.39
gi|116284398 WAS/WASL interacting protein family, member 1 [Homo... 32 0.39
gi|38373695 WAS/WASL interacting protein family, member 1 [Homo ... 32 0.39
gi|151301171 RNA polymerase II transcription factor TAFII140 [Ho... 32 0.39
>gi|151101384 coenzyme Q10 homolog A isoform a [Homo sapiens]
Length = 247
Score = 504 bits (1299), Expect = e-143
Identities = 247/247 (100%), Positives = 247/247 (100%)
Query: 1 MAWAGSRRVPAGTRAAAERCCRLSLSPGAQPAPPPGPLPPPRPMRFLTSCSLLLPRAAQI 60
MAWAGSRRVPAGTRAAAERCCRLSLSPGAQPAPPPGPLPPPRPMRFLTSCSLLLPRAAQI
Sbjct: 1 MAWAGSRRVPAGTRAAAERCCRLSLSPGAQPAPPPGPLPPPRPMRFLTSCSLLLPRAAQI 60
Query: 61 LAAEAGLPSSRSFMGFAAPFTNKRKAYSERRIMGYSMQEMYEVVSNVQEYREFVPWCKKS 120
LAAEAGLPSSRSFMGFAAPFTNKRKAYSERRIMGYSMQEMYEVVSNVQEYREFVPWCKKS
Sbjct: 61 LAAEAGLPSSRSFMGFAAPFTNKRKAYSERRIMGYSMQEMYEVVSNVQEYREFVPWCKKS 120
Query: 121 LVVSSRKGHLKAQLEVGFPPVMERYTSAVSMVKPHMVKAVCTDGKLFNHLETIWRFSPGI 180
LVVSSRKGHLKAQLEVGFPPVMERYTSAVSMVKPHMVKAVCTDGKLFNHLETIWRFSPGI
Sbjct: 121 LVVSSRKGHLKAQLEVGFPPVMERYTSAVSMVKPHMVKAVCTDGKLFNHLETIWRFSPGI 180
Query: 181 PAYPRTCTVDFSISFEFRSLLHSQLATMFFDEVVKQNVAAFERRAATKFGPETAIPRELM 240
PAYPRTCTVDFSISFEFRSLLHSQLATMFFDEVVKQNVAAFERRAATKFGPETAIPRELM
Sbjct: 181 PAYPRTCTVDFSISFEFRSLLHSQLATMFFDEVVKQNVAAFERRAATKFGPETAIPRELM 240
Query: 241 FHEVHQT 247
FHEVHQT
Sbjct: 241 FHEVHQT 247
>gi|151101386 coenzyme Q10 homolog A isoform b [Homo sapiens]
Length = 215
Score = 408 bits (1049), Expect = e-114
Identities = 202/202 (100%), Positives = 202/202 (100%)
Query: 46 FLTSCSLLLPRAAQILAAEAGLPSSRSFMGFAAPFTNKRKAYSERRIMGYSMQEMYEVVS 105
FLTSCSLLLPRAAQILAAEAGLPSSRSFMGFAAPFTNKRKAYSERRIMGYSMQEMYEVVS
Sbjct: 14 FLTSCSLLLPRAAQILAAEAGLPSSRSFMGFAAPFTNKRKAYSERRIMGYSMQEMYEVVS 73
Query: 106 NVQEYREFVPWCKKSLVVSSRKGHLKAQLEVGFPPVMERYTSAVSMVKPHMVKAVCTDGK 165
NVQEYREFVPWCKKSLVVSSRKGHLKAQLEVGFPPVMERYTSAVSMVKPHMVKAVCTDGK
Sbjct: 74 NVQEYREFVPWCKKSLVVSSRKGHLKAQLEVGFPPVMERYTSAVSMVKPHMVKAVCTDGK 133
Query: 166 LFNHLETIWRFSPGIPAYPRTCTVDFSISFEFRSLLHSQLATMFFDEVVKQNVAAFERRA 225
LFNHLETIWRFSPGIPAYPRTCTVDFSISFEFRSLLHSQLATMFFDEVVKQNVAAFERRA
Sbjct: 134 LFNHLETIWRFSPGIPAYPRTCTVDFSISFEFRSLLHSQLATMFFDEVVKQNVAAFERRA 193
Query: 226 ATKFGPETAIPRELMFHEVHQT 247
ATKFGPETAIPRELMFHEVHQT
Sbjct: 194 ATKFGPETAIPRELMFHEVHQT 215
>gi|13376737 coenzyme Q10 homolog B [Homo sapiens]
Length = 238
Score = 300 bits (769), Expect = 6e-82
Identities = 150/226 (66%), Positives = 173/226 (76%), Gaps = 9/226 (3%)
Query: 28 GAQP--APPPGPLPPPRPMRFLTSCSLL----LPRAAQILAAEAGLPSSRSFMGFAAPFT 81
G +P A G P R R+L SC +L LP IL E +R+F AP
Sbjct: 16 GCRPKSATAAGAQAPVRNGRYLASCGILMSRTLPLHTSILPKEI---CARTFFKITAPLI 72
Query: 82 NKRKAYSERRIMGYSMQEMYEVVSNVQEYREFVPWCKKSLVVSSRKGHLKAQLEVGFPPV 141
NKRK YSERRI+GYSMQEMY+VVS V++Y+ FVPWCKKS V+S R G+ K +LE+GFPPV
Sbjct: 73 NKRKEYSERRILGYSMQEMYDVVSGVEDYKHFVPWCKKSDVISKRSGYCKTRLEIGFPPV 132
Query: 142 MERYTSAVSMVKPHMVKAVCTDGKLFNHLETIWRFSPGIPAYPRTCTVDFSISFEFRSLL 201
+ERYTS V++VKPH+VKA CTDG+LFNHLETIWRFSPG+P YPRTCT+DFSISFEFRSLL
Sbjct: 133 LERYTSVVTLVKPHLVKASCTDGRLFNHLETIWRFSPGLPGYPRTCTLDFSISFEFRSLL 192
Query: 202 HSQLATMFFDEVVKQNVAAFERRAATKFGPETAIPRELMFHEVHQT 247
HSQLAT+FFDEVVKQ VAAFERRA +GPET IPRELM HEVH T
Sbjct: 193 HSQLATLFFDEVVKQMVAAFERRACKLYGPETNIPRELMLHEVHHT 238
>gi|82546824 forkhead box K1 [Homo sapiens]
Length = 733
Score = 41.6 bits (96), Expect = 6e-04
Identities = 50/185 (27%), Positives = 71/185 (38%), Gaps = 25/185 (13%)
Query: 29 AQPAPPPGPLPPPRPMRFLTSCSLLLPRAAQILAAEAGLP---SSRSFMGFAAPFTNKRK 85
AQP PPPGP PPP P LP A A +G S S + AAP
Sbjct: 44 AQPQPPPGPPPPPPPP---------LPPGAIAGAGSSGGSSGVSGDSAVAGAAPALVAAA 94
Query: 86 AYSERRIMGYSMQEMYEVVSNVQEYREFVPWCKK-SLVVSSRKGHLKAQLEVGFPPVMER 144
A S R+ G ++ + E REF ++ S+ + L +G + R
Sbjct: 95 AASVRQSPGPALARL--------EGREFEFLMRQPSVTIGRNSSQGSVDLSMGLSSFISR 146
Query: 145 YTSAVSMVKPHMVKAVCTDGKLFNHLETIWRFSPGIPAYPRTCTVDF---SISFEFRSLL 201
+S +PH +F R +P + P+ CT F +I +F SL
Sbjct: 147 RHLQLSFQEPHFYLRCLGKNGVFVDGAFQRRGAPAL-QLPKQCTFRFPSTAIKIQFTSLY 205
Query: 202 HSQLA 206
H + A
Sbjct: 206 HKEEA 210
>gi|20986497 mitogen-activated protein kinase 7 isoform 1 [Homo
sapiens]
Length = 816
Score = 41.2 bits (95), Expect = 8e-04
Identities = 22/44 (50%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 27 PGAQPAPPPGPLPPPRPMRFLTSCSLLLPRAAQILAAEAGLPSS 70
P P PPGP+P P P + TS SLL AAQ L GLP S
Sbjct: 638 PAPHPTGPPGPIPVPAPPQIATSTSLL---AAQSLVPPPGLPGS 678
>gi|209529736 mitogen-activated protein kinase 7 isoform 1 [Homo
sapiens]
Length = 816
Score = 41.2 bits (95), Expect = 8e-04
Identities = 22/44 (50%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 27 PGAQPAPPPGPLPPPRPMRFLTSCSLLLPRAAQILAAEAGLPSS 70
P P PPGP+P P P + TS SLL AAQ L GLP S
Sbjct: 638 PAPHPTGPPGPIPVPAPPQIATSTSLL---AAQSLVPPPGLPGS 678
>gi|209529734 mitogen-activated protein kinase 7 isoform 1 [Homo
sapiens]
Length = 816
Score = 41.2 bits (95), Expect = 8e-04
Identities = 22/44 (50%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 27 PGAQPAPPPGPLPPPRPMRFLTSCSLLLPRAAQILAAEAGLPSS 70
P P PPGP+P P P + TS SLL AAQ L GLP S
Sbjct: 638 PAPHPTGPPGPIPVPAPPQIATSTSLL---AAQSLVPPPGLPGS 678
>gi|20986499 mitogen-activated protein kinase 7 isoform 2 [Homo
sapiens]
Length = 677
Score = 41.2 bits (95), Expect = 8e-04
Identities = 22/44 (50%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 27 PGAQPAPPPGPLPPPRPMRFLTSCSLLLPRAAQILAAEAGLPSS 70
P P PPGP+P P P + TS SLL AAQ L GLP S
Sbjct: 499 PAPHPTGPPGPIPVPAPPQIATSTSLL---AAQSLVPPPGLPGS 539
>gi|169167066 PREDICTED: hypothetical protein [Homo sapiens]
Length = 262
Score = 37.7 bits (86), Expect = 0.009
Identities = 19/29 (65%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
Query: 27 PGAQPAPPPGPLPPPRPMRFLTSCSLLLP 55
P +P PPP PLPPP P R L +CSLLLP
Sbjct: 40 PTPRPPPPP-PLPPPGP-RLLRACSLLLP 66
>gi|113416187 PREDICTED: hypothetical protein [Homo sapiens]
Length = 262
Score = 37.7 bits (86), Expect = 0.009
Identities = 19/29 (65%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
Query: 27 PGAQPAPPPGPLPPPRPMRFLTSCSLLLP 55
P +P PPP PLPPP P R L +CSLLLP
Sbjct: 40 PTPRPPPPP-PLPPPGP-RLLRACSLLLP 66
>gi|113415691 PREDICTED: hypothetical protein [Homo sapiens]
Length = 262
Score = 37.7 bits (86), Expect = 0.009
Identities = 19/29 (65%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
Query: 27 PGAQPAPPPGPLPPPRPMRFLTSCSLLLP 55
P +P PPP PLPPP P R L +CSLLLP
Sbjct: 40 PTPRPPPPP-PLPPPGP-RLLRACSLLLP 66
>gi|122937271 WAS protein homolog associated with actin, golgi
membranes and microtubules [Homo sapiens]
Length = 809
Score = 37.0 bits (84), Expect = 0.016
Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 9 VPAGTRAAAERCCRLSLSPGAQPAPPPG--PLPPPRPMRFLTSCS 51
VP G + ++ LSL P P PPP P PPP P+R L+S S
Sbjct: 622 VPVGDQTHSKSSEELSLPPPPPPPPPPPPPPPPPPPPLRALSSSS 666
>gi|157817023 Cdc2-related kinase, arginine/serine-rich isoform 1
[Homo sapiens]
Length = 1490
Score = 35.8 bits (81), Expect = 0.035
Identities = 17/39 (43%), Positives = 19/39 (48%)
Query: 5 GSRRVPAGTRAAAERCCRLSLSPGAQPAPPPGPLPPPRP 43
G RR P + A C L P +P PPGP PPP P
Sbjct: 1240 GPRRTPTMPQEEAAACPPHILPPEKRPPEPPGPPPPPPP 1278
>gi|38788260 bromodomain PHD finger transcription factor isoform 2
[Homo sapiens]
Length = 2903
Score = 35.0 bits (79), Expect = 0.060
Identities = 19/49 (38%), Positives = 24/49 (48%)
Query: 11 AGTRAAAERCCRLSLSPGAQPAPPPGPLPPPRPMRFLTSCSLLLPRAAQ 59
A A A C ++ +P A PAPPP P PPP + LP A+Q
Sbjct: 2644 AQATAVAAPCPPVTPAPPAPPAPPPSPPPPPAVQHTGLLSTPTLPAASQ 2692
>gi|38788274 bromodomain PHD finger transcription factor isoform 1
[Homo sapiens]
Length = 2920
Score = 35.0 bits (79), Expect = 0.060
Identities = 19/49 (38%), Positives = 24/49 (48%)
Query: 11 AGTRAAAERCCRLSLSPGAQPAPPPGPLPPPRPMRFLTSCSLLLPRAAQ 59
A A A C ++ +P A PAPPP P PPP + LP A+Q
Sbjct: 2661 AQATAVAAPCPPVTPAPPAPPAPPPSPPPPPAVQHTGLLSTPTLPAASQ 2709
>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
sapiens]
Length = 2715
Score = 34.3 bits (77), Expect = 0.10
Identities = 19/41 (46%), Positives = 21/41 (51%)
Query: 27 PGAQPAPPPGPLPPPRPMRFLTSCSLLLPRAAQILAAEAGL 67
P PAPPP P P P P +S LL RA Q +EA L
Sbjct: 619 PPPPPAPPPPPAPSPPPAPATSSRRPLLLRAPQFTPSEAHL 659
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 34.3 bits (77), Expect = 0.10
Identities = 23/58 (39%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 13 TRAAAERCCRLSLSPGAQPAPPPGPLPPPRPMRFLTSCSLLLPRAAQILAAEAGLPSS 70
T A R R + + A APPP P PPP P + PRAA AA A P S
Sbjct: 107 TPPAPPRAPRGAPAAAAAAAPPPTPAPPPPPAPVAAAAPARAPRAA---AAAATAPPS 161
Score = 28.1 bits (61), Expect = 7.4
Identities = 18/42 (42%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Query: 4 AGSRRVPAGTRAAAERCCRLSLSPGAQPA----PPPGPLPPP 41
AG RR P AA E P A P PPP P PPP
Sbjct: 194 AGPRRAPPPAVAAREPPLPPPPQPPAPPQQQQPPPPQPQPPP 235
>gi|153792074 proline rich 12 [Homo sapiens]
Length = 2036
Score = 33.9 bits (76), Expect = 0.13
Identities = 23/56 (41%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 25 LSPGAQPAPPPGPL-PPPRPMRFLTSCSLLLPRAAQILAAEAGLPSSRSFMGFAAP 79
L P P PGP PPP P T +LL +A AAE P +F G AAP
Sbjct: 219 LGPAQTPPYRPGPPDPPPPPRHLPTQFNLLASSSAAAAAAEQSSPQLYNFSG-AAP 273
Score = 29.3 bits (64), Expect = 3.3
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 30 QPAPPPGPLPPPRPMR 45
QP PPP P PPP P++
Sbjct: 834 QPPPPPPPPPPPMPLQ 849
Score = 27.7 bits (60), Expect = 9.6
Identities = 10/14 (71%), Positives = 10/14 (71%)
Query: 31 PAPPPGPLPPPRPM 44
P PPP P PPP PM
Sbjct: 833 PQPPPPPPPPPPPM 846
>gi|55956910 meningioma 1 [Homo sapiens]
Length = 1320
Score = 33.5 bits (75), Expect = 0.18
Identities = 34/117 (29%), Positives = 46/117 (39%), Gaps = 14/117 (11%)
Query: 3 WAGSRRVPAGTRAAAERCCRLSLSPGAQPAPP--------PGPLPPPRPMRFL--TSCSL 52
++G+R++P G + L P P PP P PPP P + SC
Sbjct: 317 FSGARKMPVGLEPSVGSRHPLMQPPQQAPPPPQQQPPQQPPQQQPPPPPGLLVRQNSCPP 376
Query: 53 LLPRAAQILAAEAGLPS-SRSFMGFAAPFTNKRKAYSERRIMGYSMQEMYEVVSNVQ 108
LPR Q EAG PS G P + + Y R+ SM E V ++Q
Sbjct: 377 ALPRPQQ---GEAGTPSGGLQDGGPMLPSQHAQFEYPIHRLENRSMHPYSEPVFSMQ 430
>gi|40255245 G protein-coupled receptor 51 [Homo sapiens]
Length = 941
Score = 33.1 bits (74), Expect = 0.23
Identities = 17/39 (43%), Positives = 18/39 (46%)
Query: 30 QPAPPPGPLPPPRPMRFLTSCSLLLPRAAQILAAEAGLP 68
QP PPP P PPP + L LLLP A G P
Sbjct: 9 QPGPPPPPPPPPARLLLLLLLPLLLPLAPGAWGWARGAP 47
>gi|40353727 synaptopodin isoform A [Homo sapiens]
Length = 903
Score = 33.1 bits (74), Expect = 0.23
Identities = 17/37 (45%), Positives = 19/37 (51%)
Query: 6 SRRVPAGTRAAAERCCRLSLSPGAQPAPPPGPLPPPR 42
+RR A R+A R P A P PPP P PPPR
Sbjct: 765 ARRKSASPRSAGAENPRPFSPPRAPPPPPPPPPPPPR 801
>gi|116805350 homeo box (H6 family) 1 [Homo sapiens]
Length = 348
Score = 33.1 bits (74), Expect = 0.23
Identities = 18/37 (48%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 7 RRVPAGTRAAAERCCRLSLSPGAQ---PAPPPGPLPP 40
R++ AGT E R L PGA P PPPGP PP
Sbjct: 69 RQLLAGTGPGGEARARALLGPGALGLGPRPPPGPGPP 105
>gi|116008442 zinc finger CCCH-type containing 13 [Homo sapiens]
Length = 1564
Score = 33.1 bits (74), Expect = 0.23
Identities = 21/74 (28%), Positives = 32/74 (43%)
Query: 9 VPAGTRAAAERCCRLSLSPGAQPAPPPGPLPPPRPMRFLTSCSLLLPRAAQILAAEAGLP 68
VP T + +PG+ P+P LPPP P+ T+ ++ AA AA
Sbjct: 1072 VPDRTEVTEAEHTATATTPGSTPSPLSSLLPPPPPVATATATTVPATLAATTAAAATSFS 1131
Query: 69 SSRSFMGFAAPFTN 82
+S + +A TN
Sbjct: 1132 TSAITISTSATPTN 1145
>gi|169163027 PREDICTED: similar to Putative acrosin-like protease
[Homo sapiens]
Length = 355
Score = 32.7 bits (73), Expect = 0.30
Identities = 12/17 (70%), Positives = 12/17 (70%)
Query: 27 PGAQPAPPPGPLPPPRP 43
P AQP PPP P PPP P
Sbjct: 274 PAAQPRPPPSPPPPPPP 290
Score = 32.0 bits (71), Expect = 0.51
Identities = 12/18 (66%), Positives = 12/18 (66%)
Query: 26 SPGAQPAPPPGPLPPPRP 43
SP P PPP PLPPP P
Sbjct: 283 SPPPPPPPPPSPLPPPPP 300
Score = 28.9 bits (63), Expect = 4.3
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 27 PGAQPAPPPGPLPPPRPM 44
P P+PPP P PPP P+
Sbjct: 278 PRPPPSPPPPPPPPPSPL 295
Score = 27.7 bits (60), Expect = 9.6
Identities = 10/17 (58%), Positives = 10/17 (58%)
Query: 27 PGAQPAPPPGPLPPPRP 43
P P PPP P PPP P
Sbjct: 290 PPPSPLPPPPPPPPPTP 306
>gi|148613878 acrosin precursor [Homo sapiens]
Length = 421
Score = 32.7 bits (73), Expect = 0.30
Identities = 12/17 (70%), Positives = 12/17 (70%)
Query: 27 PGAQPAPPPGPLPPPRP 43
P AQP PPP P PPP P
Sbjct: 340 PAAQPRPPPSPPPPPPP 356
Score = 29.6 bits (65), Expect = 2.5
Identities = 11/17 (64%), Positives = 11/17 (64%)
Query: 27 PGAQPAPPPGPLPPPRP 43
P A P PPP P PPP P
Sbjct: 356 PPASPLPPPPPPPPPTP 372
Score = 28.9 bits (63), Expect = 4.3
Identities = 11/18 (61%), Positives = 11/18 (61%)
Query: 26 SPGAQPAPPPGPLPPPRP 43
SP P PP PLPPP P
Sbjct: 349 SPPPPPPPPASPLPPPPP 366
>gi|134142824 forkhead box D2 [Homo sapiens]
Length = 495
Score = 32.7 bits (73), Expect = 0.30
Identities = 14/23 (60%), Positives = 16/23 (69%)
Query: 15 AAAERCCRLSLSPGAQPAPPPGP 37
AAA C+LS+ PG APPPGP
Sbjct: 300 AAAAAPCQLSVPPGRAAAPPPGP 322
>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
potassium channel 2 [Homo sapiens]
Length = 889
Score = 32.3 bits (72), Expect = 0.39
Identities = 13/18 (72%), Positives = 13/18 (72%)
Query: 26 SPGAQPAPPPGPLPPPRP 43
SPGA PAP P P PPP P
Sbjct: 13 SPGATPAPGPPPPPPPAP 30
Score = 30.0 bits (66), Expect = 1.9
Identities = 11/17 (64%), Positives = 11/17 (64%)
Query: 27 PGAQPAPPPGPLPPPRP 43
P QP PPP P PPP P
Sbjct: 31 PQQQPPPPPPPAPPPGP 47
>gi|116284398 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 32.3 bits (72), Expect = 0.39
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 8/53 (15%)
Query: 27 PGAQPAPP-------PGPLPPPRPMRFLTSCSLLLPRAAQILAAEAGLPSSRS 72
P +P PP GPLPPP P+ S S LP Q L + +G+ S RS
Sbjct: 361 PSERPPPPVRDPPGRSGPLPPPPPVSRNGSTSRALPATPQ-LPSRSGVDSPRS 412
>gi|38373695 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 32.3 bits (72), Expect = 0.39
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 8/53 (15%)
Query: 27 PGAQPAPP-------PGPLPPPRPMRFLTSCSLLLPRAAQILAAEAGLPSSRS 72
P +P PP GPLPPP P+ S S LP Q L + +G+ S RS
Sbjct: 361 PSERPPPPVRDPPGRSGPLPPPPPVSRNGSTSRALPATPQ-LPSRSGVDSPRS 412
>gi|151301171 RNA polymerase II transcription factor TAFII140 [Homo
sapiens]
Length = 929
Score = 32.3 bits (72), Expect = 0.39
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 9/52 (17%)
Query: 26 SPGAQPAP--------PPGPLPPPRPMRFLTSCSLLLPRAAQILAAEAGLPS 69
+P A+PAP PP P P P PM ++ + LP AQ A A LPS
Sbjct: 780 APEAKPAPSQNRPKTPPPAPAPAPGPM-LVSPAPVPLPLLAQAAAGPALLPS 830
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.134 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,784,111
Number of Sequences: 37866
Number of extensions: 565470
Number of successful extensions: 11169
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 146
Number of HSP's that attempted gapping in prelim test: 8460
Number of HSP's gapped (non-prelim): 2277
length of query: 247
length of database: 18,247,518
effective HSP length: 100
effective length of query: 147
effective length of database: 14,460,918
effective search space: 2125754946
effective search space used: 2125754946
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.