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Search of human proteins with 15029508
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15029508 homeobox B9 [Homo sapiens]
(250 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|15029508 homeobox B9 [Homo sapiens] 518 e-147
gi|24497547 homeobox C9 [Homo sapiens] 227 6e-60
gi|23097236 homeobox A9 [Homo sapiens] 223 1e-58
gi|194363768 homeobox D9 [Homo sapiens] 213 2e-55
gi|23510366 homeobox D10 [Homo sapiens] 130 1e-30
gi|24497533 homeobox C10 [Homo sapiens] 130 1e-30
gi|182765442 homeobox A10 isoform a [Homo sapiens] 126 2e-29
gi|24497551 homeobox A10 isoform b [Homo sapiens] 124 1e-28
gi|23510368 homeobox D11 [Homo sapiens] 108 6e-24
gi|5031759 homeobox A11 [Homo sapiens] 102 3e-22
gi|12056969 homeobox C8 [Homo sapiens] 98 8e-21
gi|11321638 homeobox C5 [Homo sapiens] 97 1e-20
gi|13273317 homeobox B8 [Homo sapiens] 97 1e-20
gi|7657166 homeobox C11 [Homo sapiens] 97 2e-20
gi|148613882 homeobox A4 [Homo sapiens] 96 2e-20
gi|24497513 homeobox A3 isoform a [Homo sapiens] 93 2e-19
gi|13562112 homeobox A3 isoform a [Homo sapiens] 93 2e-19
gi|15029506 homeobox D8 [Homo sapiens] 93 2e-19
gi|24497517 homeobox A5 [Homo sapiens] 92 4e-19
gi|13489077 homeobox A6 [Homo sapiens] 90 2e-18
gi|24497556 homeobox A7 [Homo sapiens] 89 4e-18
gi|85068580 homeobox B7 [Homo sapiens] 89 4e-18
gi|4504469 homeobox B5 [Homo sapiens] 88 6e-18
gi|23503237 homeobox B6 [Homo sapiens] 86 3e-17
gi|84570137 homeobox B3 [Homo sapiens] 85 5e-17
gi|24497515 homeobox A3 isoform b [Homo sapiens] 85 7e-17
gi|19923391 homeobox D3 [Homo sapiens] 84 1e-16
gi|24497554 homeobox A13 [Homo sapiens] 84 1e-16
gi|13273315 homeobox B4 [Homo sapiens] 84 1e-16
gi|4758710 mesenchyme homeobox 1 isoform 1 [Homo sapiens] 84 1e-16
>gi|15029508 homeobox B9 [Homo sapiens]
Length = 250
Score = 518 bits (1334), Expect = e-147
Identities = 250/250 (100%), Positives = 250/250 (100%)
Query: 1 MSISGTLSSYYVDSIISHESEDAPPAKFPSGQYASSRQPGHAEHLEFPSCSFQPKAPVFG 60
MSISGTLSSYYVDSIISHESEDAPPAKFPSGQYASSRQPGHAEHLEFPSCSFQPKAPVFG
Sbjct: 1 MSISGTLSSYYVDSIISHESEDAPPAKFPSGQYASSRQPGHAEHLEFPSCSFQPKAPVFG 60
Query: 61 ASWAPLSPHASGSLPSVYHPYIQPQGVPPAESRYLRTWLEPAPRGEAAPGQGQAAVKAEP 120
ASWAPLSPHASGSLPSVYHPYIQPQGVPPAESRYLRTWLEPAPRGEAAPGQGQAAVKAEP
Sbjct: 61 ASWAPLSPHASGSLPSVYHPYIQPQGVPPAESRYLRTWLEPAPRGEAAPGQGQAAVKAEP 120
Query: 121 LLGAPGELLKQGTPEYSLETSAGREAVLSNQRPGYGDNKICEGSEDKERPDQTNPSANWL 180
LLGAPGELLKQGTPEYSLETSAGREAVLSNQRPGYGDNKICEGSEDKERPDQTNPSANWL
Sbjct: 121 LLGAPGELLKQGTPEYSLETSAGREAVLSNQRPGYGDNKICEGSEDKERPDQTNPSANWL 180
Query: 181 HARSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRRMKM 240
HARSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRRMKM
Sbjct: 181 HARSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRRMKM 240
Query: 241 KKMNKEQGKE 250
KKMNKEQGKE
Sbjct: 241 KKMNKEQGKE 250
>gi|24497547 homeobox C9 [Homo sapiens]
Length = 260
Score = 227 bits (579), Expect = 6e-60
Identities = 134/262 (51%), Positives = 170/262 (64%), Gaps = 23/262 (8%)
Query: 1 MSISGTLSSYYVDSIISHESEDAPPAKFPS-GQYASSRQPGHA--EHLEFPSCSFQPKAP 57
MS +G +S+YYVDS+ISH++ED ++FP+ G + ++ +P + +FPSCSF PK
Sbjct: 1 MSATGPISNYYVDSLISHDNEDLLASRFPATGAHPAAARPSGLVPDCSDFPSCSFAPKPA 60
Query: 58 VFGASWAPLSPHASGSLPSVYHPYIQPQGVPPAESRYLRTWLEPAPRGEAAP----GQGQ 113
VF SWAP+ +S VYHPY PQ A++RY+RTWLEP + P G
Sbjct: 61 VFSTSWAPVPSQSS----VVYHPY-GPQPHLGADTRYMRTWLEPLSGAVSFPSFPAGGRH 115
Query: 114 AAVKAEPLLG-----APGELLKQGTPEYSLETSAGREAVLSNQRPGYGDNKICEGSEDKE 168
A+K + G PGE + P+Y + S G + Q + GS+ KE
Sbjct: 116 YALKPDAYPGRRADCGPGE--GRSYPDY-MYGSPGELRDRAPQTLPSPEADALAGSKHKE 172
Query: 169 RP---DQTNPSANWLHARSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLS 225
D +NP ANW+HARS+RKKRCPYTKYQTLELEKEFLFNMYLTRDRR+EVAR+LNL+
Sbjct: 173 EKADLDPSNPVANWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLT 232
Query: 226 ERQVKIWFQNRRMKMKKMNKEQ 247
ERQVKIWFQNRRMKMKKMNKE+
Sbjct: 233 ERQVKIWFQNRRMKMKKMNKEK 254
>gi|23097236 homeobox A9 [Homo sapiens]
Length = 272
Score = 223 bits (568), Expect = 1e-58
Identities = 126/271 (46%), Positives = 164/271 (60%), Gaps = 21/271 (7%)
Query: 1 MSISGTLSSYYVDSII--SHESEDAPPAKFPSGQYASSRQPGH--AEHLEFPSCSFQPKA 56
M+ +G L +YYVDS + + +++ ++ G + AEH +F CSFQ KA
Sbjct: 1 MATTGALGNYYVDSFLLGADAADELSVGRYAPGTLGQPPRQAATLAEHPDFSPCSFQSKA 60
Query: 57 PVFGASWAPLSPHASGSLPSV------YHPYIQPQGVPPA---ESRYLRTWLEPAPRG-- 105
VFGASW P+ + ++P+ +HPY+ PQ A + RY+R+WLEP P
Sbjct: 61 TVFGASWNPVHAAGANAVPAAVYHHHHHHPYVHPQAPVAAAAPDGRYMRSWLEPTPGALS 120
Query: 106 -EAAPGQGQAAVKAEPLLGAPGELLKQGTPEYSL-ETSAGREAVLSNQRPGYG----DNK 159
P +K EPL G+ T SL + + G V ++P G +N
Sbjct: 121 FAGLPSSRPYGIKPEPLSARRGDCPTLDTHTLSLTDYACGSPPVDREKQPSEGAFSENNA 180
Query: 160 ICEGSEDKERPDQTNPSANWLHARSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVA 219
E DK D NP+ANWLHARS+RKKRCPYTK+QTLELEKEFLFNMYLTRDRR+EVA
Sbjct: 181 ENESGGDKPPIDPNNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVA 240
Query: 220 RLLNLSERQVKIWFQNRRMKMKKMNKEQGKE 250
RLLNL+ERQVKIWFQNRRMKMKK+NK++ K+
Sbjct: 241 RLLNLTERQVKIWFQNRRMKMKKINKDRAKD 271
>gi|194363768 homeobox D9 [Homo sapiens]
Length = 352
Score = 213 bits (541), Expect = 2e-55
Identities = 140/337 (41%), Positives = 175/337 (51%), Gaps = 90/337 (26%)
Query: 1 MSISGTLSSYYVDSIISHESEDAPPAKF-PSGQYASSRQPGHAE-----HLEFPSCSFQP 54
MS SGTLS+YYVDS+I HE ++ A+F P G A R G A+ EF SCSF P
Sbjct: 11 MSSSGTLSNYYVDSLIGHEGDEVFAARFGPPGPGAQGRPAGVADGPAATAAEFASCSFAP 70
Query: 55 KAPVFGASWA--PLSPHASGSLPSVYHPYIQPQGVPPAES---RYLRTWLEPAP------ 103
++ VF ASW+ P P A+ ++ +YHPY+ P + + S RY+R+W+EP P
Sbjct: 71 RSAVFSASWSAVPSQPPAAAAMSGLYHPYVPPPPLAASASEPGRYVRSWMEPLPGFPGGA 130
Query: 104 -----RGEAAPGQGQAAVKAEPLLG-----------APGELLKQGTPEYS---------- 137
G PG+G + + P G AP T S
Sbjct: 131 GGGGGGGGGGPGRGPSPGPSGPANGRHYGIKPETRAAPAPATAASTTSSSSTSLSSSSKR 190
Query: 138 LETSAGRE--------------------AVLSNQRPGYG-----------------DNKI 160
E S RE A PG G D+ I
Sbjct: 191 TECSVARESQGSSGPEFSCNSFLQEKAAAATGGTGPGAGIGAATGTGGSSEPSACSDHPI 250
Query: 161 --CEGSEDKERPDQ--------TNPSANWLHARSSRKKRCPYTKYQTLELEKEFLFNMYL 210
C E++++ Q NP+ANW+HARS+RKKRCPYTKYQTLELEKEFLFNMYL
Sbjct: 251 PGCSLKEEEKQHSQPQQQQLDPNNPAANWIHARSTRKKRCPYTKYQTLELEKEFLFNMYL 310
Query: 211 TRDRRHEVARLLNLSERQVKIWFQNRRMKMKKMNKEQ 247
TRDRR+EVAR+LNL+ERQVKIWFQNRRMKMKKM+KE+
Sbjct: 311 TRDRRYEVARILNLTERQVKIWFQNRRMKMKKMSKEK 347
>gi|23510366 homeobox D10 [Homo sapiens]
Length = 340
Score = 130 bits (327), Expect = 1e-30
Identities = 71/152 (46%), Positives = 96/152 (63%), Gaps = 6/152 (3%)
Query: 99 LEPAPRGEAAPGQGQAAVKAEPLLGAPGELLKQGTPEYSLETSAGREAVLSNQRPGYGDN 158
L+ PRG A P A ++ E + P + Q + S S + L +R +
Sbjct: 178 LQLNPRGAAKPQLSAAQLQMEKKMNEP--VSGQEPTKVSQVESPEAKGGLPEERSCLAEV 235
Query: 159 KIC----EGSEDKERPDQTNPSANWLHARSSRKKRCPYTKYQTLELEKEFLFNMYLTRDR 214
+ + E KE P++NWL A+S RKKRCPYTK+QTLELEKEFLFNMYLTR+R
Sbjct: 236 SVSSPEVQEKESKEEIKSDTPTSNWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRER 295
Query: 215 RHEVARLLNLSERQVKIWFQNRRMKMKKMNKE 246
R E+++ +NL++RQVKIWFQNRRMK+KKM++E
Sbjct: 296 RLEISKSVNLTDRQVKIWFQNRRMKLKKMSRE 327
>gi|24497533 homeobox C10 [Homo sapiens]
Length = 342
Score = 130 bits (326), Expect = 1e-30
Identities = 68/133 (51%), Positives = 89/133 (66%), Gaps = 9/133 (6%)
Query: 117 KAEPLLGAPGELLKQGT---PEYSLETSAGREAVLSNQRPGYGDNKICEGSEDKERPDQT 173
K++ +P E+ + + P+ S S A ++ P DN E KE
Sbjct: 203 KSDSQTPSPNEIKTEQSLAGPKGSPSESEKERAKAADSSPDTSDN------EAKEEIKAE 256
Query: 174 NPSANWLHARSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWF 233
N + NWL A+S RKKRCPYTK+QTLELEKEFLFNMYLTR+RR E+++ +NL++RQVKIWF
Sbjct: 257 NTTGNWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKTINLTDRQVKIWF 316
Query: 234 QNRRMKMKKMNKE 246
QNRRMK+KKMN+E
Sbjct: 317 QNRRMKLKKMNRE 329
>gi|182765442 homeobox A10 isoform a [Homo sapiens]
Length = 410
Score = 126 bits (316), Expect = 2e-29
Identities = 71/146 (48%), Positives = 88/146 (60%), Gaps = 12/146 (8%)
Query: 108 APGQGQAAVKAEPLLGAPGELL-------KQGTPEYSLETSAGREAVLSNQRPGYGDNKI 160
A G AA K L P L QG E +SA E P ++
Sbjct: 257 ASGSADAARKERALDSPPPPTLACGSGGGSQGDEEAHASSSAAEEL-----SPAPSESSK 311
Query: 161 CEGSEDKERPDQTNPSANWLHARSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVAR 220
+D + +ANWL A+S RKKRCPYTK+QTLELEKEFLFNMYLTR+RR E++R
Sbjct: 312 ASPEKDSLGNSKGENAANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISR 371
Query: 221 LLNLSERQVKIWFQNRRMKMKKMNKE 246
++L++RQVKIWFQNRRMK+KKMN+E
Sbjct: 372 SVHLTDRQVKIWFQNRRMKLKKMNRE 397
>gi|24497551 homeobox A10 isoform b [Homo sapiens]
Length = 94
Score = 124 bits (310), Expect = 1e-28
Identities = 58/87 (66%), Positives = 73/87 (83%), Gaps = 6/87 (6%)
Query: 160 ICEGSEDKERPDQTNPSANWLHARSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVA 219
+C+G+ E +ANWL A+S RKKRCPYTK+QTLELEKEFLFNMYLTR+RR E++
Sbjct: 1 MCQGNSKGEN------AANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEIS 54
Query: 220 RLLNLSERQVKIWFQNRRMKMKKMNKE 246
R ++L++RQVKIWFQNRRMK+KKMN+E
Sbjct: 55 RSVHLTDRQVKIWFQNRRMKLKKMNRE 81
>gi|23510368 homeobox D11 [Homo sapiens]
Length = 338
Score = 108 bits (269), Expect = 6e-24
Identities = 75/207 (36%), Positives = 111/207 (53%), Gaps = 22/207 (10%)
Query: 48 PSCSFQPKAPVFGASWAPLSPHASGSLPSVYHPYIQPQGVPPA------ESRYLRTWLEP 101
P F+ PV A P PH S ++ + G+ P E+ + P
Sbjct: 137 PDVLFKAPEPVCAA---PGPPHGPAGAASNFYSAVGRNGILPQGFDQFYEAAPGPPFAGP 193
Query: 102 APRGEAAPGQGQ-AAVKAEPLLGAPGELLKQGTPEYSLETSAGREAVLSNQRPGYGDNKI 160
P AP Q + AA K +P GA G G+P + + G E + + G GD +
Sbjct: 194 QPPPPPAPPQPEGAADKGDPRTGAGGG---GGSP--CTKATPGSEPKGAAEGSG-GDGEG 247
Query: 161 CEGSEDKERPDQTNPSANWLHARSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVAR 220
G E+ S++ + + SRKKRCPYTKYQ ELE+EF FN+Y+ +++R +++R
Sbjct: 248 PPGEAGAEK------SSSAVAPQRSRKKRCPYTKYQIRELEREFFFNVYINKEKRLQLSR 301
Query: 221 LLNLSERQVKIWFQNRRMKMKKMNKEQ 247
+LNL++RQVKIWFQNRRMK KK+N+++
Sbjct: 302 MLNLTDRQVKIWFQNRRMKEKKLNRDR 328
>gi|5031759 homeobox A11 [Homo sapiens]
Length = 313
Score = 102 bits (254), Expect = 3e-22
Identities = 79/242 (32%), Positives = 118/242 (48%), Gaps = 36/242 (14%)
Query: 29 PSGQYA---SSRQPGHAEHLEFPSCSFQPKAPVFGASWAPLSPHASGSLPSVYHPYIQPQ 85
P G A S+ + H + L+ PS + P V S A + H + ++ S ++ +
Sbjct: 75 PRGNLAHCYSAEELVHRDCLQAPSAAGVP-GDVLAKSSANVYHHPTPAVSSNFYSTVGRN 133
Query: 86 GV-PPAESRYLRTWLEPAPRGEAA---PGQGQAAVKAEPLL---GAPGELLKQGTPEYSL 138
GV P A ++ T P A+ PG ++A K P A G P S
Sbjct: 134 GVLPQAFDQFFET-AYGTPENLASSDYPGD-KSAEKGPPAATATSAAAAAAATGAPATSS 191
Query: 139 ETSAGREAVLSNQRPGYGDNKICEGSEDKER-------------PDQTNPSANWLHARSS 185
S G G G + +E+KER T A + +
Sbjct: 192 SDSGG----------GGGCRETAAAAEEKERRRRPESSSSPESSSGHTEDKAGGSSGQRT 241
Query: 186 RKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRRMKMKKMNK 245
RKKRCPYTKYQ ELE+EF F++Y+ +++R +++R+LNL++RQVKIWFQNRRMK KK+N+
Sbjct: 242 RKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKINR 301
Query: 246 EQ 247
++
Sbjct: 302 DR 303
>gi|12056969 homeobox C8 [Homo sapiens]
Length = 242
Score = 97.8 bits (242), Expect = 8e-21
Identities = 83/243 (34%), Positives = 115/243 (47%), Gaps = 36/243 (14%)
Query: 7 LSSYYVDSIISHESEDAPPAKFPSGQYASSRQPGHAEHLEFPSCSFQPKAPVFGASW-AP 65
+SSY+V+ + S K+ +G+ S +P + + FP + A V+G AP
Sbjct: 1 MSSYFVNPLFS---------KYKAGE---SLEPAYYD-CRFPQSVGRSHALVYGPGGSAP 47
Query: 66 LSPHASGSLPSVYHPYIQPQGVPPAESRYLRTWLEPAPRGEAAPGQGQAAVKAEPLLGAP 125
HAS + +H G+ + S Y + + G+A+ G A+ + L GA
Sbjct: 48 GFQHASHHVQDFFHH--GTSGI--SNSGYQQNPCSLSCHGDASKFYGYEALPRQSLYGAQ 103
Query: 126 GELLKQGTPEYSLETSAGREAVLSNQRPGYGDNKICEGSEDKERPDQTNPSANWL--HAR 183
E P+ + + +N G G P P W+ HA
Sbjct: 104 QEASVVQYPDC-------KSSANTNSSEGQGH------LNQNSSPSLMFP---WMRPHAP 147
Query: 184 SSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRRMKMKKM 243
R R Y++YQTLELEKEFLFN YLTR RR EV+ L L+ERQVKIWFQNRRMK KK
Sbjct: 148 GRRSGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKE 207
Query: 244 NKE 246
N +
Sbjct: 208 NNK 210
>gi|11321638 homeobox C5 [Homo sapiens]
Length = 222
Score = 97.4 bits (241), Expect = 1e-20
Identities = 65/153 (42%), Positives = 79/153 (51%), Gaps = 9/153 (5%)
Query: 101 PAPRGEAAPGQGQAAVKAEPLLGAPGELLKQGTPEYSLETSAGREAVLSNQRPGYGDNKI 160
PA AAPG +A PL PG + Q +LE A + ++ G
Sbjct: 74 PACSAAAAPGHAPGRDEAAPL--NPG-MYSQKAARPALEERAKSSGEIKEEQAQTGQPA- 129
Query: 161 CEGSEDKERPDQTNPSANWLHAR---SSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHE 217
G P Q P LH ++ R YT+YQTLELEKEF FN YLTR RR E
Sbjct: 130 --GLSQPPAPPQIYPWMTKLHMSHETDGKRSRTSYTRYQTLELEKEFHFNRYLTRRRRIE 187
Query: 218 VARLLNLSERQVKIWFQNRRMKMKKMNKEQGKE 250
+A L L+ERQ+KIWFQNRRMK KK +K + KE
Sbjct: 188 IANNLCLNERQIKIWFQNRRMKWKKDSKMKSKE 220
>gi|13273317 homeobox B8 [Homo sapiens]
Length = 243
Score = 97.1 bits (240), Expect = 1e-20
Identities = 82/241 (34%), Positives = 113/241 (46%), Gaps = 35/241 (14%)
Query: 7 LSSYYVDSIISHESEDAPPAKFPSGQYASSRQPGHAEHLEFPSCSFQPKAPVFGASWAPL 66
+SSY+V+S+ S K+ +G+ S +P + + +P V+G S
Sbjct: 1 MSSYFVNSLFS---------KYKTGE---SLRPNYYDCGFAQDLGGRPTV-VYGPSSGGS 47
Query: 67 SPHASGSLPSVYHPYIQPQGVPPAESRYLRTWLEPAPRGEAAPGQGQAAVKAEPLLGAPG 126
H S + YH P + A Y + A G+ G ++ + L GA
Sbjct: 48 FQHPS-QIQEFYHG---PSSLSTAP--YQQNPCAVACHGDPGNFYGYDPLQRQSLFGAQD 101
Query: 127 -ELLKQGTPEYSLETSAGREAVLSNQRPGYGDNKICEGSEDKERPDQTNPSANWLHARSS 185
+L++ + + + G EA EGSE P Q P A
Sbjct: 102 PDLVQYADCKLAAASGLGEEA---------------EGSEQSPSPTQLFPWMRPQAAAGR 146
Query: 186 RKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRRMKMKKMNK 245
R+ R Y++YQTLELEKEFLFN YLTR RR EV+ L L+ERQVKIWFQNRRMK KK N
Sbjct: 147 RRGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENN 206
Query: 246 E 246
+
Sbjct: 207 K 207
>gi|7657166 homeobox C11 [Homo sapiens]
Length = 304
Score = 96.7 bits (239), Expect = 2e-20
Identities = 63/191 (32%), Positives = 97/191 (50%), Gaps = 19/191 (9%)
Query: 59 FGASWAPLSPHASGSLPSVYHPYIQPQGV-PPAESRYL-RTWLEPAPRGEAAPGQGQAAV 116
+G P +PHA+ P+ ++ + V P A R+ + P G+
Sbjct: 121 YGGHHHPSAPHAT---PAGFYSSVNKNSVLPQAFDRFFDNAYCGGGDPPAEPPCSGKGEA 177
Query: 117 KAEPLLGAPGELLKQGTPEYSLETSAGREAVLSNQRPGYGDNKICEGSEDKERPDQTNPS 176
K EP L + E A EA N P GS + +
Sbjct: 178 KGEPEAPPASGLASRA------EAGAEAEAEEENTNPS------SSGSAHSVAKEPAKGA 225
Query: 177 ANWLHARSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNR 236
A +A +RKKRCPY+K+Q ELE+EF FN+Y+ +++R +++R+LNL++RQVKIWFQNR
Sbjct: 226 AP--NAPRTRKKRCPYSKFQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNR 283
Query: 237 RMKMKKMNKEQ 247
RMK KK+++++
Sbjct: 284 RMKEKKLSRDR 294
>gi|148613882 homeobox A4 [Homo sapiens]
Length = 320
Score = 96.3 bits (238), Expect = 2e-20
Identities = 87/228 (38%), Positives = 99/228 (43%), Gaps = 42/228 (18%)
Query: 18 HESEDAPPAKFPSGQYASSRQPGHAEHLEFPSCSFQPKAPVFGASWAPLSPHASGSLPSV 77
+ + A +P G Y PG E P Q K P G HAS L
Sbjct: 90 YPAHGAADTAYPYG-YRGGASPGRPPQPEQPPA--QAKGPAHGL-------HASHVLQPQ 139
Query: 78 YHPYIQPQGVPPAESRYLRTWLEPAPRGEAAPGQGQAAVKAEPLLGAPGELLKQGTPEYS 137
P +QP+ VPPA R E AP P G A A PLL A L
Sbjct: 140 LPPPLQPRAVPPAAPRRC----EAAPATPGVPAGGSAP--ACPLLLADKSPLGL------ 187
Query: 138 LETSAGREAVLSNQRPGYGDNKICEGSEDKERPDQTNPSANWLHARSSRKKRCPYTKYQT 197
G+E V+ Y K K NPS N ++ R YT+ Q
Sbjct: 188 ----KGKEPVV------YPWMK-------KIHVSAVNPSYN---GGEPKRSRTAYTRQQV 227
Query: 198 LELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRRMKMKKMNK 245
LELEKEF FN YLTR RR E+A L LSERQVKIWFQNRRMK KK +K
Sbjct: 228 LELEKEFHFNRYLTRRRRIEIAHTLCLSERQVKIWFQNRRMKWKKDHK 275
>gi|24497513 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 93.2 bits (230), Expect = 2e-19
Identities = 73/190 (38%), Positives = 89/190 (46%), Gaps = 33/190 (17%)
Query: 65 PLSPHASGSLPSVYHPYIQPQGVPPAESRYLRTWLEPAPRGEAAPGQGQ------AAVKA 118
P P A+ P P QP PA P P A+P Q A
Sbjct: 92 PPPPQAAPPAPQPPQPAPQPPAPTPAA---------PPPPSSASPPQNASNNPTPANAAK 142
Query: 119 EPLLGAPGELLKQGTPEYSLETSAGREAVLSNQRPGYGDNKICEGSEDKERPDQTNPSAN 178
PLL +P + KQ P + E+ + S+ G + C G DK P Q
Sbjct: 143 SPLLNSP-TVAKQIFP-WMKESRQNTKQKTSSSSSG----ESCAG--DKSPPGQA----- 189
Query: 179 WLHARSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRRM 238
SS++ R YT Q +ELEKEF FN YL R RR E+A LLNL+ERQ+KIWFQNRRM
Sbjct: 190 -----SSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRM 244
Query: 239 KMKKMNKEQG 248
K KK K +G
Sbjct: 245 KYKKDQKGKG 254
>gi|13562112 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 93.2 bits (230), Expect = 2e-19
Identities = 73/190 (38%), Positives = 89/190 (46%), Gaps = 33/190 (17%)
Query: 65 PLSPHASGSLPSVYHPYIQPQGVPPAESRYLRTWLEPAPRGEAAPGQGQ------AAVKA 118
P P A+ P P QP PA P P A+P Q A
Sbjct: 92 PPPPQAAPPAPQPPQPAPQPPAPTPAA---------PPPPSSASPPQNASNNPTPANAAK 142
Query: 119 EPLLGAPGELLKQGTPEYSLETSAGREAVLSNQRPGYGDNKICEGSEDKERPDQTNPSAN 178
PLL +P + KQ P + E+ + S+ G + C G DK P Q
Sbjct: 143 SPLLNSP-TVAKQIFP-WMKESRQNTKQKTSSSSSG----ESCAG--DKSPPGQA----- 189
Query: 179 WLHARSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRRM 238
SS++ R YT Q +ELEKEF FN YL R RR E+A LLNL+ERQ+KIWFQNRRM
Sbjct: 190 -----SSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRM 244
Query: 239 KMKKMNKEQG 248
K KK K +G
Sbjct: 245 KYKKDQKGKG 254
>gi|15029506 homeobox D8 [Homo sapiens]
Length = 290
Score = 92.8 bits (229), Expect = 2e-19
Identities = 86/271 (31%), Positives = 124/271 (45%), Gaps = 44/271 (16%)
Query: 7 LSSYYVDSIISHESEDAPPAKFPSGQYASSRQPGHAEHLEFPSCSFQPKA---------- 56
+SSY+V+ + S A A++ G A + + C F P+
Sbjct: 1 MSSYFVNPLYSKYKAAA----------AAAAAAGEAINPTYYDCHFAPEVGGRHAAAAAA 50
Query: 57 -PVFGASWAPLSPHASGSLPSVYHPYIQPQGVPPA--ESRYLRTWLEPAPRGEAAPGQGQ 113
++G S A PHA + HP P G E R + + P AA Q
Sbjct: 51 LQLYGNSAAGF-PHAPPQAHAHPHPSPPPSGTGCGGREGRG-QEYFHPGGGSPAAAYQAA 108
Query: 114 AAVKAEPLLGAP----GELLKQGTP-EYSLETSAGREAVLSNQRPG----YGDNKICEGS 164
P P G + G P ++ + R+ + + Q+ Y D K G+
Sbjct: 109 PPPPPHPPPPPPPPPCGGIACHGEPAKFYGYDNLQRQPIFTTQQEAELVQYPDCKSSSGN 168
Query: 165 EDKERPDQTNPSAN------WLHARSS---RKKRCPYTKYQTLELEKEFLFNMYLTRDRR 215
++ PD N S++ W+ +++ R+ R Y+++QTLELEKEFLFN YLTR RR
Sbjct: 169 IGED-PDHLNQSSSPSQMFPWMRPQAAPGRRRGRQTYSRFQTLELEKEFLFNPYLTRKRR 227
Query: 216 HEVARLLNLSERQVKIWFQNRRMKMKKMNKE 246
EV+ L L+ERQVKIWFQNRRMK KK N +
Sbjct: 228 IEVSHALALTERQVKIWFQNRRMKWKKENNK 258
>gi|24497517 homeobox A5 [Homo sapiens]
Length = 270
Score = 92.0 bits (227), Expect = 4e-19
Identities = 65/183 (35%), Positives = 78/183 (42%), Gaps = 18/183 (9%)
Query: 81 YIQPQGVPPAESRYLRTWL-------EPAPRGEAAPGQGQAAVKA--EPLLGAPGELLKQ 131
Y PAE RY + +P P AP G + L + G
Sbjct: 73 YAASASAAPAEPRYSQPATSTHSPQPDPLPCSAVAPSPGSDSHHGGKNSLSNSSGASADA 132
Query: 132 GTPEYSLETSAGREAVLSNQRPGYGDNKICEGSEDKERPDQTN--PSANWLHAR------ 183
G+ S G + P + + P Q P LH
Sbjct: 133 GSTHISSREGVGTASGAEEDAPASSEQASAQSEPSPAPPAQPQIYPWMRKLHISHDNIGG 192
Query: 184 -SSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRRMKMKK 242
++ R YT+YQTLELEKEF FN YLTR RR E+A L LSERQ+KIWFQNRRMK KK
Sbjct: 193 PEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKK 252
Query: 243 MNK 245
NK
Sbjct: 253 DNK 255
>gi|13489077 homeobox A6 [Homo sapiens]
Length = 233
Score = 89.7 bits (221), Expect = 2e-18
Identities = 45/72 (62%), Positives = 52/72 (72%)
Query: 174 NPSANWLHARSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWF 233
N A ++ R+ R YT+YQTLELEKEF FN YLTR RR E+A L L+ERQ+KIWF
Sbjct: 144 NSCAGAVYGSHGRRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWF 203
Query: 234 QNRRMKMKKMNK 245
QNRRMK KK NK
Sbjct: 204 QNRRMKWKKENK 215
>gi|24497556 homeobox A7 [Homo sapiens]
Length = 230
Score = 89.0 bits (219), Expect = 4e-18
Identities = 44/72 (61%), Positives = 54/72 (75%), Gaps = 2/72 (2%)
Query: 179 WLHARSSRKKRC--PYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNR 236
W+ + +KR YT+YQTLELEKEF FN YLTR RR E+A L L+ERQ+KIWFQNR
Sbjct: 122 WMRSSGPDRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNR 181
Query: 237 RMKMKKMNKEQG 248
RMK KK +K++G
Sbjct: 182 RMKWKKEHKDEG 193
>gi|85068580 homeobox B7 [Homo sapiens]
Length = 217
Score = 89.0 bits (219), Expect = 4e-18
Identities = 49/99 (49%), Positives = 63/99 (63%), Gaps = 6/99 (6%)
Query: 156 GDNKICEGSEDKERPDQTNPSA----NWLHARSSRKKRC--PYTKYQTLELEKEFLFNMY 209
GD+ G++++ D S W+ + + +KR YT+YQTLELEKEF +N Y
Sbjct: 102 GDSAKAAGAKEQRDSDLAAESNFRIYPWMRSSGTDRKRGRQTYTRYQTLELEKEFHYNRY 161
Query: 210 LTRDRRHEVARLLNLSERQVKIWFQNRRMKMKKMNKEQG 248
LTR RR E+A L L+ERQ+KIWFQNRRMK KK NK G
Sbjct: 162 LTRRRRIEIAHTLCLTERQIKIWFQNRRMKWKKENKTAG 200
>gi|4504469 homeobox B5 [Homo sapiens]
Length = 269
Score = 88.2 bits (217), Expect = 6e-18
Identities = 43/60 (71%), Positives = 48/60 (80%)
Query: 186 RKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRRMKMKKMNK 245
++ R YT+YQTLELEKEF FN YLTR RR E+A L LSERQ+KIWFQNRRMK KK NK
Sbjct: 195 KRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNK 254
>gi|23503237 homeobox B6 [Homo sapiens]
Length = 224
Score = 85.9 bits (211), Expect = 3e-17
Identities = 42/62 (67%), Positives = 49/62 (79%)
Query: 184 SSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRRMKMKKM 243
S R+ R YT+YQTLELEKEF +N YLTR RR E+A L L+ERQ+KIWFQNRRMK KK
Sbjct: 145 SGRRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 204
Query: 244 NK 245
+K
Sbjct: 205 SK 206
>gi|84570137 homeobox B3 [Homo sapiens]
Length = 431
Score = 85.1 bits (209), Expect = 5e-17
Identities = 42/65 (64%), Positives = 49/65 (75%)
Query: 184 SSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRRMKMKKM 243
+S++ R YT Q +ELEKEF FN YL R RR E+A LLNLSERQ+KIWFQNRRMK KK
Sbjct: 187 ASKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKD 246
Query: 244 NKEQG 248
K +G
Sbjct: 247 QKAKG 251
>gi|24497515 homeobox A3 isoform b [Homo sapiens]
Length = 285
Score = 84.7 bits (208), Expect = 7e-17
Identities = 42/65 (64%), Positives = 49/65 (75%)
Query: 184 SSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRRMKMKKM 243
SS++ R YT Q +ELEKEF FN YL R RR E+A LLNL+ERQ+KIWFQNRRMK KK
Sbjct: 32 SSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKD 91
Query: 244 NKEQG 248
K +G
Sbjct: 92 QKGKG 96
>gi|19923391 homeobox D3 [Homo sapiens]
Length = 432
Score = 84.0 bits (206), Expect = 1e-16
Identities = 46/87 (52%), Positives = 54/87 (62%), Gaps = 11/87 (12%)
Query: 162 EGSEDKERPDQTNPSANWLHARSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARL 221
E EDK P +S++ R YT Q +ELEKEF FN YL R RR E+A L
Sbjct: 182 ESCEDKSPPGP-----------ASKRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANL 230
Query: 222 LNLSERQVKIWFQNRRMKMKKMNKEQG 248
LNL+ERQ+KIWFQNRRMK KK K +G
Sbjct: 231 LNLTERQIKIWFQNRRMKYKKDQKAKG 257
>gi|24497554 homeobox A13 [Homo sapiens]
Length = 388
Score = 84.0 bits (206), Expect = 1e-16
Identities = 70/229 (30%), Positives = 99/229 (43%), Gaps = 27/229 (11%)
Query: 24 PPAKFPSGQYASSRQPGHAEHLEFPSCSFQPKAPVFGASWAPLSPHASGSLPSVYHPYIQ 83
P F SG Y +R H ++ SC+ QP + A++A +G P +
Sbjct: 170 PYGYFGSGYYPCARMGPHPNAIK--SCA-QPASAAAAAAFADKYMDTAG-------PAAE 219
Query: 84 PQGVPPAESRYLRTWLEPAPRGEAAPGQGQAAVKAEPLLGAPGELLKQ--GTPEYSLETS 141
E + P P G + P LG PGE + G P S +
Sbjct: 220 EFSSRAKEFAFYHQGYAAGPYHHHQPMPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPW 279
Query: 142 AGREAVLSNQRPGYGDNKICEGSEDKER-------PDQTNPSANWLHARSSRKKRCPYTK 194
A L N G+ C + + PD + ++ R RKKR PYTK
Sbjct: 280 A-----LPN---GWNGQMYCPKEQAQPPHLWKSTLPDVVSHPSDASSYRRGRKKRVPYTK 331
Query: 195 YQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRRMKMKKM 243
Q ELE+E+ N ++T+D+R ++ NLSERQV IWFQNRR+K KK+
Sbjct: 332 VQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 380
>gi|13273315 homeobox B4 [Homo sapiens]
Length = 251
Score = 84.0 bits (206), Expect = 1e-16
Identities = 83/254 (32%), Positives = 106/254 (41%), Gaps = 49/254 (19%)
Query: 7 LSSYYVDSIISHESEDAPPAK--FPSGQYASSRQPGHAEHLEFPSCSFQPKAPVFGASWA 64
+SS+ ++S ++ PP + S S PG+ + SFQP+A +
Sbjct: 3 MSSFLINS--NYVDPKFPPCEEYSQSDYLPSDHSPGYYAGGQRRESSFQPEAGFGRRAAC 60
Query: 65 PLSPHASGSLPSVYHPYIQPQGVPPAESRYLRTWLEPAPRGEAA----PGQGQAAVKAEP 120
+ +A+ P P P PP R PAP A PGQ AV + P
Sbjct: 61 TVQRYAACRDPGPPPPPPPPPPPPPPPGLSPRA---PAPPPAGALLPEPGQRCEAVSSSP 117
Query: 121 LLGAPGELLKQGTPEYSLETSAGREAVL---------SNQRPGYGDNKICEGSEDKERPD 171
P Q S SA +E V+ S P Y G E K
Sbjct: 118 ----PPPPCAQNPLHPSPSHSACKEPVVYPWMRKVHVSTVNPNYA------GGEPK---- 163
Query: 172 QTNPSANWLHARSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKI 231
+ R YT+ Q LELEKEF +N YLTR RR E+A L LSERQ+KI
Sbjct: 164 ---------------RSRTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHALCLSERQIKI 208
Query: 232 WFQNRRMKMKKMNK 245
WFQNRRMK KK +K
Sbjct: 209 WFQNRRMKWKKDHK 222
>gi|4758710 mesenchyme homeobox 1 isoform 1 [Homo sapiens]
Length = 254
Score = 84.0 bits (206), Expect = 1e-16
Identities = 66/195 (33%), Positives = 92/195 (47%), Gaps = 25/195 (12%)
Query: 57 PVFGASWAPLSPHASGSLPSVYHPYIQPQGVPPAESRYLRTWLEPAPRGEAAPGQGQAAV 116
P F AS +PH SLP H + + P W P P G A
Sbjct: 60 PDFSASCLAATPH---SLPQEEHIFTEQHPAFPQSPN----WHFPVSDARRRPNSGPAGG 112
Query: 117 KAEPLLGAPGELLKQGTP--EYSL--ETSAGREAVLSNQRPGYGDNKICEGSEDKERPDQ 172
E + G + G P +Y + T+ E S +R DN+ E++ +P+
Sbjct: 113 SKEMGTSSLGLVDTTGGPGDDYGVLGSTANETEKKSSRRRKESSDNQ-----ENRGKPEG 167
Query: 173 TNPSANWLHARSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIW 232
++ +RK+R +TK Q ELE EF + YLTR RR+E+A L+LSERQVK+W
Sbjct: 168 SS---------KARKERTAFTKEQLRELEAEFAHHNYLTRLRRYEIAVNLDLSERQVKVW 218
Query: 233 FQNRRMKMKKMNKEQ 247
FQNRRMK K++ Q
Sbjct: 219 FQNRRMKWKRVKGGQ 233
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.129 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,793,371
Number of Sequences: 37866
Number of extensions: 654205
Number of successful extensions: 2230
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 273
Number of HSP's successfully gapped in prelim test: 85
Number of HSP's that attempted gapping in prelim test: 1843
Number of HSP's gapped (non-prelim): 463
length of query: 250
length of database: 18,247,518
effective HSP length: 100
effective length of query: 150
effective length of database: 14,460,918
effective search space: 2169137700
effective search space used: 2169137700
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.