Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 150170683
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|150170683 chromosome 3 open reading frame 72 [Homo sapiens]
(175 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|150170683 chromosome 3 open reading frame 72 [Homo sapiens] 356 7e-99
gi|116292168 KRAB A domain containing 1 [Homo sapiens] 36 0.015
gi|87196343 PDZ domain containing 2 [Homo sapiens] 35 0.025
gi|169206171 PREDICTED: hypothetical protein [Homo sapiens] 35 0.043
gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo ... 35 0.043
gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo s... 35 0.043
gi|169214102 PREDICTED: similar to hCG92381 [Homo sapiens] 34 0.074
gi|169214479 PREDICTED: similar to hCG92381 [Homo sapiens] 34 0.074
gi|169213433 PREDICTED: hypothetical protein LOC646698 [Homo sap... 34 0.074
gi|33636756 MAP/microtubule affinity-regulating kinase 4 [Homo s... 34 0.074
gi|221139764 PHD and ring finger domains 1 [Homo sapiens] 33 0.097
gi|111120318 NK6 transcription factor related, locus 1 [Homo sap... 33 0.13
gi|239749372 PREDICTED: hypothetical protein XP_002347017 [Homo ... 33 0.16
gi|239743509 PREDICTED: hypothetical protein XP_002342878 [Homo ... 33 0.16
gi|133922600 splicing factor, arginine/serine-rich 16 [Homo sapi... 32 0.22
gi|239754873 PREDICTED: similar to hCG2040393 [Homo sapiens] 32 0.37
gi|239749412 PREDICTED: hypothetical protein XP_002347031 [Homo ... 32 0.37
gi|239743547 PREDICTED: hypothetical protein XP_002342883 [Homo ... 32 0.37
gi|55749742 HEAT repeat containing 5B [Homo sapiens] 32 0.37
gi|205277396 dynactin 1 isoform 4 [Homo sapiens] 31 0.48
gi|13259508 dynactin 1 isoform 2 [Homo sapiens] 31 0.48
gi|13259510 dynactin 1 isoform 1 [Homo sapiens] 31 0.48
gi|239751156 PREDICTED: hypothetical protein LOC146429 isoform 6... 31 0.48
gi|239750914 PREDICTED: hypothetical protein XP_002347614 [Homo ... 31 0.48
gi|239745312 PREDICTED: hypothetical protein XP_002343435 [Homo ... 31 0.48
gi|58761548 tau tubulin kinase 1 [Homo sapiens] 31 0.48
gi|57222570 codanin 1 [Homo sapiens] 31 0.48
gi|16418355 cAMP responsive element binding protein 3-like 1 [Ho... 31 0.48
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 31 0.63
gi|157785645 SPEG complex locus [Homo sapiens] 31 0.63
>gi|150170683 chromosome 3 open reading frame 72 [Homo sapiens]
Length = 175
Score = 356 bits (913), Expect = 7e-99
Identities = 175/175 (100%), Positives = 175/175 (100%)
Query: 1 MTRTPVGSARTRPKPRKLGPQRGKALQASSRLSESPALVKKRMPDACTLGRAGIGLPKMC 60
MTRTPVGSARTRPKPRKLGPQRGKALQASSRLSESPALVKKRMPDACTLGRAGIGLPKMC
Sbjct: 1 MTRTPVGSARTRPKPRKLGPQRGKALQASSRLSESPALVKKRMPDACTLGRAGIGLPKMC 60
Query: 61 LHMAVRHSKAQKTGPGILQQRQKPPAPRASGGPALLGKRRGCSEAGSASLEPLSSSRAAA 120
LHMAVRHSKAQKTGPGILQQRQKPPAPRASGGPALLGKRRGCSEAGSASLEPLSSSRAAA
Sbjct: 61 LHMAVRHSKAQKTGPGILQQRQKPPAPRASGGPALLGKRRGCSEAGSASLEPLSSSRAAA 120
Query: 121 GCLNQVPLSPFLAGPRNTRRLPAPERERIELAATLCLEGWPLRCLASKGKLHCVY 175
GCLNQVPLSPFLAGPRNTRRLPAPERERIELAATLCLEGWPLRCLASKGKLHCVY
Sbjct: 121 GCLNQVPLSPFLAGPRNTRRLPAPERERIELAATLCLEGWPLRCLASKGKLHCVY 175
>gi|116292168 KRAB A domain containing 1 [Homo sapiens]
Length = 1030
Score = 36.2 bits (82), Expect = 0.015
Identities = 34/127 (26%), Positives = 50/127 (39%), Gaps = 10/127 (7%)
Query: 20 PQRGKALQASSRLSESPALVKKRMPDACTLGRAGIGLP--KMCLHMAVRHSKAQKTGPGI 77
P RG + P L +C+ G G G+ + + A + +K GPG
Sbjct: 112 PLRGLLSCLPDGPTSQPHLATTPTDSSCSSGPTGDGVQGSPLPIKTADKPWPTRKEGPGA 171
Query: 78 LQQRQKPPAPRASGGPALLGKRRGCSEAG-SASLEPLSSSRAAAGCLNQVPLSPFLAGPR 136
L PP S + G+ RG SEAG S PL + CL ++ + GPR
Sbjct: 172 LGGEPSPPTHSPSRRKSHRGQERGTSEAGISPGNSPL---QGLINCLKEI----LVPGPR 224
Query: 137 NTRRLPA 143
+ P+
Sbjct: 225 HPETSPS 231
>gi|87196343 PDZ domain containing 2 [Homo sapiens]
Length = 2839
Score = 35.4 bits (80), Expect = 0.025
Identities = 35/121 (28%), Positives = 46/121 (38%), Gaps = 12/121 (9%)
Query: 3 RTPVGSARTRPKPRKLGPQRGKALQASSRLSESPALVKKRMPDACTLGRAGIGLPKMCLH 62
R+P ++P GP + S R SP K +P+ R H
Sbjct: 1952 RSPQCVLESKPPLATSGPLKPSVSDTSIRTFVSPLTSPKPVPEQGMWSR---------FH 2002
Query: 63 MAV--RHSKAQKTGPGILQQRQKPPAPRASGGPAL-LGKRRGCSEAGSASLEPLSSSRAA 119
MAV + T P + R + APRA GP R G S AG+ EP +S A
Sbjct: 2003 MAVLSEPDRGCPTTPKSPKCRAEGRAPRADSGPVSPAASRNGMSVAGNRQSEPRLASHVA 2062
Query: 120 A 120
A
Sbjct: 2063 A 2063
>gi|169206171 PREDICTED: hypothetical protein [Homo sapiens]
Length = 466
Score = 34.7 bits (78), Expect = 0.043
Identities = 41/156 (26%), Positives = 57/156 (36%), Gaps = 27/156 (17%)
Query: 7 GSARTRPKPRKLGPQRGKALQASSRL--SESPALVKKRMPDACTLG-------RAGIGLP 57
G + T P PR L + G A A +++ SE A +P + L R G+
Sbjct: 207 GGSGTPPPPRALWNRHGGAAGARAQVRGSEKRACPGSTLPPSSVLAGCVGTRARGHGGVQ 266
Query: 58 KMCLHMAVRHSKAQKTGPGILQQRQKPPAPRASGGPA-------------LLGKRRGCSE 104
+ HS +T P + R PAPR S PA L+G RG
Sbjct: 267 RQRFSAPSSHSTGARTLPTPSRARPGKPAPRGSAPPARLRGGGGGSGLTQLVGSGRGSGV 326
Query: 105 AGSASLEPLSSSRAA-----AGCLNQVPLSPFLAGP 135
S L++ R + G L VP L+ P
Sbjct: 327 THSVGTHALATRRGSRAPRPVGVLRGVPHFRPLSSP 362
>gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo
sapiens]
Length = 1691
Score = 34.7 bits (78), Expect = 0.043
Identities = 34/134 (25%), Positives = 52/134 (38%), Gaps = 7/134 (5%)
Query: 14 KPRKLGPQRGKALQASSRLSESPALVKKRMPDACTLGRAGI----GLPKMCLHMAVRHSK 69
KP LGP+ + + P P G++G+ G P + H + ++
Sbjct: 790 KPGLLGPKGERGSPGTPGQVGQPGTPGSSGPYGIK-GKSGLPGAPGFPGISGHPGKKGTR 848
Query: 70 AQKTGPGILQQRQKPPAPRASGGPALLGKRRGCSEAGSASLEPLSSSRAAAGCLNQV--P 127
+K PG + ++ P G P L+G + G A L LS + G + V P
Sbjct: 849 GKKGPPGSIVKKGLPGLKGLPGNPGLVGLKGSPGSPGVAGLPALSGPKGEKGSVGFVGFP 908
Query: 128 LSPFLAGPRNTRRL 141
P L G TR L
Sbjct: 909 GIPGLPGIPGTRGL 922
>gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo
sapiens]
Length = 1690
Score = 34.7 bits (78), Expect = 0.043
Identities = 34/134 (25%), Positives = 52/134 (38%), Gaps = 7/134 (5%)
Query: 14 KPRKLGPQRGKALQASSRLSESPALVKKRMPDACTLGRAGI----GLPKMCLHMAVRHSK 69
KP LGP+ + + P P G++G+ G P + H + ++
Sbjct: 789 KPGLLGPKGERGSPGTPGQVGQPGTPGSSGPYGIK-GKSGLPGAPGFPGISGHPGKKGTR 847
Query: 70 AQKTGPGILQQRQKPPAPRASGGPALLGKRRGCSEAGSASLEPLSSSRAAAGCLNQV--P 127
+K PG + ++ P G P L+G + G A L LS + G + V P
Sbjct: 848 GKKGPPGSIVKKGLPGLKGLPGNPGLVGLKGSPGSPGVAGLPALSGPKGEKGSVGFVGFP 907
Query: 128 LSPFLAGPRNTRRL 141
P L G TR L
Sbjct: 908 GIPGLPGIPGTRGL 921
>gi|169214102 PREDICTED: similar to hCG92381 [Homo sapiens]
Length = 497
Score = 33.9 bits (76), Expect = 0.074
Identities = 35/158 (22%), Positives = 66/158 (41%), Gaps = 15/158 (9%)
Query: 8 SARTRPKPRKLGPQRGKALQASSRLSESPALVKKR-----MPDACTLGRAGIGL-PKMCL 61
S++ ++ P G+A Q L PAL +++ +P+ + A L PK L
Sbjct: 159 SSQRASSVNEMRPGEGQASQELQTLPRVPALSRRQEEDFLLPETTVMKSAPKALRPKPTL 218
Query: 62 HMAVRHSKAQKTGPGILQQRQKPPAPRASGGPALLGKRRGCSEAGSASLEPLSSSRAAAG 121
+ + + TG P P+ GP+++G + G AS+E + + +A
Sbjct: 219 EKDLNVDREENTG-------LTSPEPQLPNGPSVVGAKEGKEPKKRASVENVDADTPSA- 270
Query: 122 CLNQVPLSPFLAGPRNTRRLPAPERERIELAATLCLEG 159
C+ + S + L P+R + + A ++ EG
Sbjct: 271 CVVEREASTHSGNRGDALNLRCPKRSKPD-ATSISQEG 307
>gi|169214479 PREDICTED: similar to hCG92381 [Homo sapiens]
Length = 497
Score = 33.9 bits (76), Expect = 0.074
Identities = 35/158 (22%), Positives = 66/158 (41%), Gaps = 15/158 (9%)
Query: 8 SARTRPKPRKLGPQRGKALQASSRLSESPALVKKR-----MPDACTLGRAGIGL-PKMCL 61
S++ ++ P G+A Q L PAL +++ +P+ + A L PK L
Sbjct: 159 SSQRASSVNEMRPGEGQASQELQTLPRVPALSRRQEEDFLLPETTVMKSAPKALRPKPTL 218
Query: 62 HMAVRHSKAQKTGPGILQQRQKPPAPRASGGPALLGKRRGCSEAGSASLEPLSSSRAAAG 121
+ + + TG P P+ GP+++G + G AS+E + + +A
Sbjct: 219 EKDLNVDREENTG-------LTSPEPQLPNGPSVVGAKEGKEPKKRASVENVDADTPSA- 270
Query: 122 CLNQVPLSPFLAGPRNTRRLPAPERERIELAATLCLEG 159
C+ + S + L P+R + + A ++ EG
Sbjct: 271 CVVEREASTHSGNRGDALNLRCPKRSKPD-ATSISQEG 307
>gi|169213433 PREDICTED: hypothetical protein LOC646698 [Homo
sapiens]
Length = 497
Score = 33.9 bits (76), Expect = 0.074
Identities = 35/158 (22%), Positives = 66/158 (41%), Gaps = 15/158 (9%)
Query: 8 SARTRPKPRKLGPQRGKALQASSRLSESPALVKKR-----MPDACTLGRAGIGL-PKMCL 61
S++ ++ P G+A Q L PAL +++ +P+ + A L PK L
Sbjct: 159 SSQRASSVNEMRPGEGQASQELQTLPRVPALSRRQEEDFLLPETTVMKSAPKALRPKPTL 218
Query: 62 HMAVRHSKAQKTGPGILQQRQKPPAPRASGGPALLGKRRGCSEAGSASLEPLSSSRAAAG 121
+ + + TG P P+ GP+++G + G AS+E + + +A
Sbjct: 219 EKDLNVDREENTG-------LTSPEPQLPNGPSVVGAKEGKEPKKRASVENVDADTPSA- 270
Query: 122 CLNQVPLSPFLAGPRNTRRLPAPERERIELAATLCLEG 159
C+ + S + L P+R + + A ++ EG
Sbjct: 271 CVVEREASTHSGSRGDALNLRCPKRSKPD-ATSISQEG 307
>gi|33636756 MAP/microtubule affinity-regulating kinase 4 [Homo
sapiens]
Length = 688
Score = 33.9 bits (76), Expect = 0.074
Identities = 32/132 (24%), Positives = 48/132 (36%), Gaps = 16/132 (12%)
Query: 24 KALQASSRLSESPALVKKRMPDACTLGRAGIGLPKMCLHMAVRHSKAQKTGPGILQQRQK 83
K + R + AL + R P T G + HSK Q++ RQ+
Sbjct: 370 KTEEGGDRGAPGLALARVRAPSDTTNGTSS--------SKGTSHSKGQRSSSSTYH-RQR 420
Query: 84 PPAPRASGGPALLGKRRGCSEAGSASLEP-------LSSSRAAAGCLNQVPLSPFLAGPR 136
+ PA L +R + G A L+ S S A +G P SP ++
Sbjct: 421 RHSDFCGPSPAPLHPKRSPTSTGEAELKEERLPGRKASCSTAGSGSRGLPPSSPMVSSAH 480
Query: 137 NTRRLPAPERER 148
N + PER +
Sbjct: 481 NPNKAEIPERRK 492
>gi|221139764 PHD and ring finger domains 1 [Homo sapiens]
Length = 1648
Score = 33.5 bits (75), Expect = 0.097
Identities = 30/100 (30%), Positives = 38/100 (38%), Gaps = 6/100 (6%)
Query: 3 RTPVGSARTRPKPRKL-GPQRGKALQASSRLSESPALVKKRMPDACTLGRAGIGLPKMCL 61
RT + PK R+ G R A A + E P+ R+ GR G G P
Sbjct: 672 RTDISELPRIPKIRRDDGGGRRDAAPAHGQSIEIPSACISRLT-----GREGTGQPGRGT 726
Query: 62 HMAVRHSKAQKTGPGILQQRQKPPAPRASGGPALLGKRRG 101
S PG+ +PPAP + G A LG RG
Sbjct: 727 RAESEASSRVPREPGVHTGSSRPPAPSSHGSLAPLGPSRG 766
>gi|111120318 NK6 transcription factor related, locus 1 [Homo
sapiens]
Length = 367
Score = 33.1 bits (74), Expect = 0.13
Identities = 45/150 (30%), Positives = 58/150 (38%), Gaps = 19/150 (12%)
Query: 3 RTPVGSARTRPKPRKLGPQRGKALQASSRLSESPALVKKR---MPDACTLGRAGIGLPKM 59
+TP+ A P P GP + +SS S SP L + T G + +G P
Sbjct: 32 KTPLYPAAYPPLPA--GPPSSSSSSSSSS-SPSPPLGTHNPGGLKPPATGGLSSLGSPPQ 88
Query: 60 CLHMAVRHSKAQKTGPGILQQRQKPPAPRASGG--PALLGKRRGCSEAGSASLEPLSSSR 117
L A H GI +P P ASG P+ S + SAS S++
Sbjct: 89 QLSAATPH--------GINDILSRPSMPVASGAALPSASPSGSSSSSSSSASASSASAAA 140
Query: 118 AAAGCLNQVPLSP--FLAG-PRNTRRLPAP 144
AAA SP LAG PR + P P
Sbjct: 141 AAAAAAAAAASSPAGLLAGLPRFSSLSPPP 170
>gi|239749372 PREDICTED: hypothetical protein XP_002347017 [Homo
sapiens]
Length = 212
Score = 32.7 bits (73), Expect = 0.16
Identities = 38/135 (28%), Positives = 51/135 (37%), Gaps = 7/135 (5%)
Query: 19 GPQRGKALQASSRLSESPALVKKRMPDACTLGRAGIGLPKMCLHMAVRHS-----KAQKT 73
G G AL S R S P V A L R G P +C H V + +A +
Sbjct: 9 GGPLGPALGCSHRPSLGPLSVSHGPAVAPNLPRTGFASP-LCTHTPVHETTDPRKEAAQH 67
Query: 74 GPGILQQRQKPPAPRASGGPALLGKRRGCSEAGSASLEPLSSSRAAAGCLNQVPLSPFLA 133
++ R PAP ++ PA R G S + + AAA L P +A
Sbjct: 68 EVFLVPARAATPAPPSAPAPARPSLRLGSSSLTGGACCATAQLTAAARRTKATQLRPGIA 127
Query: 134 GPRN-TRRLPAPERE 147
N T R PA ++
Sbjct: 128 LAANATPRTPAEAKK 142
>gi|239743509 PREDICTED: hypothetical protein XP_002342878 [Homo
sapiens]
Length = 212
Score = 32.7 bits (73), Expect = 0.16
Identities = 38/135 (28%), Positives = 51/135 (37%), Gaps = 7/135 (5%)
Query: 19 GPQRGKALQASSRLSESPALVKKRMPDACTLGRAGIGLPKMCLHMAVRHS-----KAQKT 73
G G AL S R S P V A L R G P +C H V + +A +
Sbjct: 9 GGPLGPALGCSHRPSLGPLSVSHGPAVAPNLPRTGFASP-LCTHTPVHETTDPRKEAAQH 67
Query: 74 GPGILQQRQKPPAPRASGGPALLGKRRGCSEAGSASLEPLSSSRAAAGCLNQVPLSPFLA 133
++ R PAP ++ PA R G S + + AAA L P +A
Sbjct: 68 EVFLVPARAATPAPPSAPAPARPSLRLGSSSLTGGACCATAQLTAAARRTKATQLRPGIA 127
Query: 134 GPRN-TRRLPAPERE 147
N T R PA ++
Sbjct: 128 LAANATPRTPAEAKK 142
>gi|133922600 splicing factor, arginine/serine-rich 16 [Homo
sapiens]
Length = 674
Score = 32.3 bits (72), Expect = 0.22
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 83 KPPAPRASGGPA----LLGKRRGCSEAGSASLEPLSSSRAAA 120
KPPAP GGPA +RR S + S+S SSSR+++
Sbjct: 355 KPPAPPQPGGPAPGRNASARRRSSSSSSSSSASRTSSSRSSS 396
>gi|239754873 PREDICTED: similar to hCG2040393 [Homo sapiens]
Length = 333
Score = 31.6 bits (70), Expect = 0.37
Identities = 41/144 (28%), Positives = 55/144 (38%), Gaps = 18/144 (12%)
Query: 5 PVGSA----RTRPKPRKLG-------PQRGKALQASSRLSESPALVKKRMPDACTLGRAG 53
P+G+A R R KP G P G A SR P +C L +G
Sbjct: 98 PLGAATAGSRHRQKPPSPGSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSG 157
Query: 54 -IGLPKMCLHMAVRHSKAQKTGPGILQQRQKPPAPRASGGPALL-GKRRGCSEAGSASLE 111
G + H A + GP ++ P P+ G G RRG +E G LE
Sbjct: 158 STGTRRAPSHPAALQVPYTREGP---REPTPPAGPQGFAGSFCAEGSRRG-AEVGWGKLE 213
Query: 112 PLSSSRAAAGCLNQVPLSPFLAGP 135
P + R + ++ PLS L GP
Sbjct: 214 PQGTRRTGSLGVDSSPLSETL-GP 236
>gi|239749412 PREDICTED: hypothetical protein XP_002347031 [Homo
sapiens]
Length = 333
Score = 31.6 bits (70), Expect = 0.37
Identities = 41/144 (28%), Positives = 55/144 (38%), Gaps = 18/144 (12%)
Query: 5 PVGSA----RTRPKPRKLG-------PQRGKALQASSRLSESPALVKKRMPDACTLGRAG 53
P+G+A R R KP G P G A SR P +C L +G
Sbjct: 98 PLGAATAGSRHRQKPPSPGSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSG 157
Query: 54 -IGLPKMCLHMAVRHSKAQKTGPGILQQRQKPPAPRASGGPALL-GKRRGCSEAGSASLE 111
G + H A + GP ++ P P+ G G RRG +E G LE
Sbjct: 158 STGTRRAPSHPAALQVPYTREGP---REPTPPAGPQGFAGSFCAEGSRRG-AEVGWGKLE 213
Query: 112 PLSSSRAAAGCLNQVPLSPFLAGP 135
P + R + ++ PLS L GP
Sbjct: 214 PQGTRRTGSLGVDSSPLSETL-GP 236
>gi|239743547 PREDICTED: hypothetical protein XP_002342883 [Homo
sapiens]
Length = 333
Score = 31.6 bits (70), Expect = 0.37
Identities = 41/144 (28%), Positives = 55/144 (38%), Gaps = 18/144 (12%)
Query: 5 PVGSA----RTRPKPRKLG-------PQRGKALQASSRLSESPALVKKRMPDACTLGRAG 53
P+G+A R R KP G P G A SR P +C L +G
Sbjct: 98 PLGAATAGSRHRQKPPSPGSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCHLRSSG 157
Query: 54 -IGLPKMCLHMAVRHSKAQKTGPGILQQRQKPPAPRASGGPALL-GKRRGCSEAGSASLE 111
G + H A + GP ++ P P+ G G RRG +E G LE
Sbjct: 158 STGTRRAPSHPAALQVPYTREGP---REPTPPAGPQGFAGSFCAEGSRRG-AEVGWGKLE 213
Query: 112 PLSSSRAAAGCLNQVPLSPFLAGP 135
P + R + ++ PLS L GP
Sbjct: 214 PQGTRRTGSLGVDSSPLSETL-GP 236
>gi|55749742 HEAT repeat containing 5B [Homo sapiens]
Length = 2071
Score = 31.6 bits (70), Expect = 0.37
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 56 LPKMCLHMAVRHSKAQKTGPGILQQRQKPPAPRASGGPALLGKRRGCSEAGSASLEPLS- 114
+P +C+H+ H ++ L+Q + A L K G E+ SA++ P +
Sbjct: 1068 VPSLCVHLCSSHLLLRRAAVACLRQLAQREAAEVCEYAMSLAKNTGDKESSSANVSPFAP 1127
Query: 115 --SSRAAAGCLNQ 125
SSR C +Q
Sbjct: 1128 GVSSRTDIHCRHQ 1140
>gi|205277396 dynactin 1 isoform 4 [Homo sapiens]
Length = 1139
Score = 31.2 bits (69), Expect = 0.48
Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 11/80 (13%)
Query: 80 QRQKPPAPRASGGPALLGKRRGCSEAGSASLEPLSSSRAAAGCLNQVPL------SPFLA 133
+R KP P ++G + G +GSAS LSSS + Q PL +P L
Sbjct: 14 RRPKPTRPASTG---VAGASSSLGPSGSASAGELSSSEPSTPA--QTPLAAPIIPTPVLT 68
Query: 134 GPRNTRRLPAPERERIELAA 153
P LP+P +E L A
Sbjct: 69 SPGAVPPLPSPSKEEEGLRA 88
>gi|13259508 dynactin 1 isoform 2 [Homo sapiens]
Length = 1144
Score = 31.2 bits (69), Expect = 0.48
Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 11/80 (13%)
Query: 80 QRQKPPAPRASGGPALLGKRRGCSEAGSASLEPLSSSRAAAGCLNQVPL------SPFLA 133
+R KP P ++G + G +GSAS LSSS + Q PL +P L
Sbjct: 14 RRPKPTRPASTG---VAGASSSLGPSGSASAGELSSSEPSTPA--QTPLAAPIIPTPVLT 68
Query: 134 GPRNTRRLPAPERERIELAA 153
P LP+P +E L A
Sbjct: 69 SPGAVPPLPSPSKEEEGLRA 88
>gi|13259510 dynactin 1 isoform 1 [Homo sapiens]
Length = 1278
Score = 31.2 bits (69), Expect = 0.48
Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 11/80 (13%)
Query: 80 QRQKPPAPRASGGPALLGKRRGCSEAGSASLEPLSSSRAAAGCLNQVPL------SPFLA 133
+R KP P ++G + G +GSAS LSSS + Q PL +P L
Sbjct: 148 RRPKPTRPASTG---VAGASSSLGPSGSASAGELSSSEPSTPA--QTPLAAPIIPTPVLT 202
Query: 134 GPRNTRRLPAPERERIELAA 153
P LP+P +E L A
Sbjct: 203 SPGAVPPLPSPSKEEEGLRA 222
>gi|239751156 PREDICTED: hypothetical protein LOC146429 isoform 6
[Homo sapiens]
Length = 560
Score = 31.2 bits (69), Expect = 0.48
Identities = 27/82 (32%), Positives = 34/82 (41%), Gaps = 15/82 (18%)
Query: 84 PPAPRASGGPALLGKRRGCSEAGSASLEPLSSSRAAAGCLNQVPLSPFLAGPRNTRRLPA 143
PPA RA GPALL A++ L +RAA+ CL LSP P P+
Sbjct: 58 PPALRALRGPALL----------DAAIPRLGPTRAASPCLPLGVLSPSYLAPLTRAPRPS 107
Query: 144 PERERIELAA-----TLCLEGW 160
AA +C +GW
Sbjct: 108 SWASCSGAAAGPTWNLVCGDGW 129
>gi|239750914 PREDICTED: hypothetical protein XP_002347614 [Homo
sapiens]
Length = 492
Score = 31.2 bits (69), Expect = 0.48
Identities = 34/122 (27%), Positives = 42/122 (34%), Gaps = 15/122 (12%)
Query: 2 TRTPVGSARTRPKPRKLGPQRGKALQASSRLSESPALVKKRMPDACTL-GRAGIGLPKMC 60
+R V + R RP+ R+ P R Q S +PA +P A AG G P
Sbjct: 366 SRADVTAGRARPRRRRWEPLRA---QRSGARPGAPAPPLPCLPPAAVCHALAGAGAPGGR 422
Query: 61 LHMAVRHSKAQKTGPGILQQRQKPPAPRASGGPALL-----------GKRRGCSEAGSAS 109
L + + G G PPAP GP L G S GS
Sbjct: 423 LELGLSPGTRLIRGGGAAVPTAAPPAPLPRWGPGPLPGPTGLFDLSVGVSAASSSLGSTE 482
Query: 110 LE 111
LE
Sbjct: 483 LE 484
>gi|239745312 PREDICTED: hypothetical protein XP_002343435 [Homo
sapiens]
Length = 492
Score = 31.2 bits (69), Expect = 0.48
Identities = 34/122 (27%), Positives = 42/122 (34%), Gaps = 15/122 (12%)
Query: 2 TRTPVGSARTRPKPRKLGPQRGKALQASSRLSESPALVKKRMPDACTL-GRAGIGLPKMC 60
+R V + R RP+ R+ P R Q S +PA +P A AG G P
Sbjct: 366 SRADVTAGRARPRRRRWEPLRA---QRSGARPGAPAPPLPCLPPAAVCHALAGAGAPGGR 422
Query: 61 LHMAVRHSKAQKTGPGILQQRQKPPAPRASGGPALL-----------GKRRGCSEAGSAS 109
L + + G G PPAP GP L G S GS
Sbjct: 423 LELGLSPGTRLIRGGGAAVPTAAPPAPLPRWGPGPLPGPTGLFDLSVGVSAASSSLGSTE 482
Query: 110 LE 111
LE
Sbjct: 483 LE 484
>gi|58761548 tau tubulin kinase 1 [Homo sapiens]
Length = 1321
Score = 31.2 bits (69), Expect = 0.48
Identities = 27/101 (26%), Positives = 41/101 (40%), Gaps = 2/101 (1%)
Query: 3 RTPVGSARTRPKPRKLGPQRGKALQASSRLSESPALVKKRMPDACTLGRAGIGLPK-MCL 61
+TP GSA K P RG + + PA R+P + + R P+ L
Sbjct: 1195 QTPPGSATAADLRPKQPPGRGLGPGRAQAGARPPAPRSPRLPASTSAARNASASPRSQSL 1254
Query: 62 HMAVRHSKAQKTGPGILQQRQKPPA-PRASGGPALLGKRRG 101
S + + PG+ R PPA + G P+ G ++G
Sbjct: 1255 SRRESPSPSHQARPGVPPPRGVPPARAQPDGTPSPGGSKKG 1295
Score = 28.1 bits (61), Expect = 4.1
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Query: 74 GPGILQQRQKPPAPRASGGPALLGKRRGCSEAGSASLEPLSSS 116
GPG Q +PPAPR+ PA S A +AS P S S
Sbjct: 1217 GPGRAQAGARPPAPRSPRLPA------STSAARNASASPRSQS 1253
>gi|57222570 codanin 1 [Homo sapiens]
Length = 1227
Score = 31.2 bits (69), Expect = 0.48
Identities = 31/121 (25%), Positives = 44/121 (36%), Gaps = 12/121 (9%)
Query: 5 PVGSARTRPKPRKLGP---QRGKALQASSRLSESPAL--VKKRMPDACTLGRAGIGLPKM 59
P G T+P R++ P ++L SP + V P A G+GLP
Sbjct: 185 PPGPTGTKPS-RRINPTPVSEERSLSKPKTCFTSPPISCVPSSQPSALDTSPWGLGLPPG 243
Query: 60 CLHMAVRHSKAQKTGPGILQQRQKPPAPRASGGPALLGKRRGCSEAGSASLEPLSSSRAA 119
C + +K LQQ P P G L S GS + EP +R +
Sbjct: 244 CRSLQEEREMLRKERSKQLQQSPTPTCPTPELGSPL------PSRTGSLTDEPADPARVS 297
Query: 120 A 120
+
Sbjct: 298 S 298
>gi|16418355 cAMP responsive element binding protein 3-like 1 [Homo
sapiens]
Length = 519
Score = 31.2 bits (69), Expect = 0.48
Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 6/81 (7%)
Query: 82 QKPPAPRASGGPALLGKRRGCSEAGSASLEPLSSSRAAAGCLNQVPLSPFLAGPRNTRRL 141
Q PP P +S G G + S S+ + P++ S A + SP L P +
Sbjct: 203 QMPPTPPSSHGSDSDGSQSPRSLPPSSPVRPMARSSTA------ISTSPLLTAPHKLQGT 256
Query: 142 PAPERERIELAATLCLEGWPL 162
P E TL EG+P+
Sbjct: 257 SGPLLLTEEEKRTLIAEGYPI 277
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 30.8 bits (68), Expect = 0.63
Identities = 39/154 (25%), Positives = 57/154 (37%), Gaps = 15/154 (9%)
Query: 5 PVGSARTRPKPRKLGPQRGKALQASSRLSESPALVKKRMPDACTLGRAGIGLP--KMCLH 62
P + RP+P GP++ + AS + P+ +R P A G+ P +
Sbjct: 190 PRPAPSARPRPPTEGPRKSVS-SASEHSTTEPSPAARRRPSA----GGGLQRPASRSLSS 244
Query: 63 MAVRHSKAQKTGPGILQQRQKPPAPRASGGPALLGKRRGCSEAGSASLEPLSSSRAAA-G 121
A S ++GP R P AP P K +G + P A A G
Sbjct: 245 SATPLSSPARSGPSA---RGTPRAPAHPSQP----KPKGLQALRPPQVTPPRKDAAPALG 297
Query: 122 CLNQVPLSPFLAGPRNTRRLPAPERERIELAATL 155
L+ PL+ R +P P+ L ATL
Sbjct: 298 PLSSSPLATPSPSGTKARPVPPPDNAATPLPATL 331
>gi|157785645 SPEG complex locus [Homo sapiens]
Length = 3267
Score = 30.8 bits (68), Expect = 0.63
Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 9/91 (9%)
Query: 66 RHSKAQKTGP---GILQQRQKPPAPRASGGPALLGKRRGCSEAGSASLEPLSSSRAAAGC 122
R K++ +GP G + R + P ASG + LG+ AGS L+ L
Sbjct: 354 RGKKSKSSGPSLAGTAESRPQTPLSEASGRLSALGRSPRLVRAGSRILDKLQFFEERRRS 413
Query: 123 LNQ-----VPLSPFLAGPRNTRRLPAPERER 148
L + PL P++ R R L P+ ER
Sbjct: 414 LERSDSPPAPLRPWVP-LRKARSLEQPKSER 443
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.133 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,157,849
Number of Sequences: 37866
Number of extensions: 414054
Number of successful extensions: 2101
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 128
Number of HSP's that attempted gapping in prelim test: 2034
Number of HSP's gapped (non-prelim): 192
length of query: 175
length of database: 18,247,518
effective HSP length: 95
effective length of query: 80
effective length of database: 14,650,248
effective search space: 1172019840
effective search space used: 1172019840
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.