Search of human proteins with 149408153

Search of human proteins with 149408153

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|149408153 hypothetical protein LOC125228 [Homo sapiens]
         (272 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|149408153 hypothetical protein LOC125228 [Homo sapiens]            550   e-157
gi|116268105 hypothetical protein LOC125228 [Homo sapiens]            550   e-157
gi|93277094 hypothetical protein LOC116151 [Homo sapiens]              64   1e-10
gi|67782330 trinucleotide repeat containing 6B isoform 3 [Homo s...    33   0.27 
gi|18921093 transient receptor potential cation channel, subfami...    32   0.45 
gi|210032509 hypothetical protein LOC100130302 [Homo sapiens]          31   1.3  
gi|30089940 Golgi autoantigen, golgin subfamily a, 3 [Homo sapiens]    31   1.3  
gi|5174457 kinetochore associated 2 [Homo sapiens]                     30   1.7  
gi|149363664 septin 8 isoform d [Homo sapiens]                         30   1.7  
gi|149363638 septin 8 isoform c [Homo sapiens]                         30   1.7  
gi|149363689 septin 8 isoform a [Homo sapiens]                         30   1.7  
gi|149363661 septin 8 isoform b [Homo sapiens]                         30   1.7  
gi|46049114 M-phase phosphoprotein 1 [Homo sapiens]                    30   1.7  
gi|157785548 PAS domain containing 1 [Homo sapiens]                    30   2.2  
gi|11386183 WAS protein family, member 2 [Homo sapiens]                30   2.9  
gi|188497714 transmembrane and coiled-coil domain family 3 [Homo...    30   2.9  
gi|20149640 dual oxidase 1 precursor [Homo sapiens]                    29   3.8  
gi|28872751 dual oxidase 1 precursor [Homo sapiens]                    29   3.8  
gi|31563330 A-kinase anchor protein 13 isoform 1 [Homo sapiens]        29   3.8  
gi|21493029 A-kinase anchor protein 13 isoform 2 [Homo sapiens]        29   3.8  
gi|239752280 PREDICTED: similar to family with sequence similari...    29   5.0  
gi|41406064 myosin, heavy polypeptide 10, non-muscle [Homo sapiens]    29   5.0  
gi|210032463 family with sequence similarity 48, member B2 [Homo...    29   5.0  
gi|148886752 immunoglobulin superfamily, member 9B [Homo sapiens]      29   5.0  
gi|4503969 growth differentiation factor 5 preproprotein [Homo s...    28   6.5  
gi|239745153 PREDICTED: similar to Putative golgin subfamily A m...    28   6.5  
gi|239745127 PREDICTED: similar to Putative golgin subfamily A m...    28   6.5  
gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens]     28   6.5  
gi|38570109 CAP-binding protein complex interacting protein 1 is...    28   6.5  
gi|38570107 CAP-binding protein complex interacting protein 1 is...    28   6.5  

>gi|149408153 hypothetical protein LOC125228 [Homo sapiens]
          Length = 272

 Score =  550 bits (1416), Expect = e-157
 Identities = 272/272 (100%), Positives = 272/272 (100%)

Query: 1   MQWNVPRTVSRLARRTCLEPHNAGLFGHCQNVKGPLLLYNAESKVVLVQGPQKQWLHLSA 60
           MQWNVPRTVSRLARRTCLEPHNAGLFGHCQNVKGPLLLYNAESKVVLVQGPQKQWLHLSA
Sbjct: 1   MQWNVPRTVSRLARRTCLEPHNAGLFGHCQNVKGPLLLYNAESKVVLVQGPQKQWLHLSA 60

Query: 61  AQCVAKERRPLDAHPPQPGVLRHKQGKQHVSFRRVFSSSATAQGTPEKKEEPDPLQDKSI 120
           AQCVAKERRPLDAHPPQPGVLRHKQGKQHVSFRRVFSSSATAQGTPEKKEEPDPLQDKSI
Sbjct: 61  AQCVAKERRPLDAHPPQPGVLRHKQGKQHVSFRRVFSSSATAQGTPEKKEEPDPLQDKSI 120

Query: 121 SLYQRFKKTFRQYGKVLIPVHLITSGVWFGTFYYAALKGVNVVPFLELIGLPDSVVSILK 180
           SLYQRFKKTFRQYGKVLIPVHLITSGVWFGTFYYAALKGVNVVPFLELIGLPDSVVSILK
Sbjct: 121 SLYQRFKKTFRQYGKVLIPVHLITSGVWFGTFYYAALKGVNVVPFLELIGLPDSVVSILK 180

Query: 181 NSQSGNALTAYALFKIATPARYTVTLGGTSVTVKYLRSHGYMSTPPPVKEYLQDRMEETK 240
           NSQSGNALTAYALFKIATPARYTVTLGGTSVTVKYLRSHGYMSTPPPVKEYLQDRMEETK
Sbjct: 181 NSQSGNALTAYALFKIATPARYTVTLGGTSVTVKYLRSHGYMSTPPPVKEYLQDRMEETK 240

Query: 241 ELITEKMEETKDRLTEKLQETKEKVSFKKKVE 272
           ELITEKMEETKDRLTEKLQETKEKVSFKKKVE
Sbjct: 241 ELITEKMEETKDRLTEKLQETKEKVSFKKKVE 272


>gi|116268105 hypothetical protein LOC125228 [Homo sapiens]
          Length = 272

 Score =  550 bits (1416), Expect = e-157
 Identities = 272/272 (100%), Positives = 272/272 (100%)

Query: 1   MQWNVPRTVSRLARRTCLEPHNAGLFGHCQNVKGPLLLYNAESKVVLVQGPQKQWLHLSA 60
           MQWNVPRTVSRLARRTCLEPHNAGLFGHCQNVKGPLLLYNAESKVVLVQGPQKQWLHLSA
Sbjct: 1   MQWNVPRTVSRLARRTCLEPHNAGLFGHCQNVKGPLLLYNAESKVVLVQGPQKQWLHLSA 60

Query: 61  AQCVAKERRPLDAHPPQPGVLRHKQGKQHVSFRRVFSSSATAQGTPEKKEEPDPLQDKSI 120
           AQCVAKERRPLDAHPPQPGVLRHKQGKQHVSFRRVFSSSATAQGTPEKKEEPDPLQDKSI
Sbjct: 61  AQCVAKERRPLDAHPPQPGVLRHKQGKQHVSFRRVFSSSATAQGTPEKKEEPDPLQDKSI 120

Query: 121 SLYQRFKKTFRQYGKVLIPVHLITSGVWFGTFYYAALKGVNVVPFLELIGLPDSVVSILK 180
           SLYQRFKKTFRQYGKVLIPVHLITSGVWFGTFYYAALKGVNVVPFLELIGLPDSVVSILK
Sbjct: 121 SLYQRFKKTFRQYGKVLIPVHLITSGVWFGTFYYAALKGVNVVPFLELIGLPDSVVSILK 180

Query: 181 NSQSGNALTAYALFKIATPARYTVTLGGTSVTVKYLRSHGYMSTPPPVKEYLQDRMEETK 240
           NSQSGNALTAYALFKIATPARYTVTLGGTSVTVKYLRSHGYMSTPPPVKEYLQDRMEETK
Sbjct: 181 NSQSGNALTAYALFKIATPARYTVTLGGTSVTVKYLRSHGYMSTPPPVKEYLQDRMEETK 240

Query: 241 ELITEKMEETKDRLTEKLQETKEKVSFKKKVE 272
           ELITEKMEETKDRLTEKLQETKEKVSFKKKVE
Sbjct: 241 ELITEKMEETKDRLTEKLQETKEKVSFKKKVE 272


>gi|93277094 hypothetical protein LOC116151 [Homo sapiens]
          Length = 192

 Score = 64.3 bits (155), Expect = 1e-10
 Identities = 53/196 (27%), Positives = 89/196 (45%), Gaps = 14/196 (7%)

Query: 34  GPLLLYNAESKVVLVQGPQKQWLHLSAAQCVAKERRPLDAHPPQ--PGVLRHKQG--KQH 89
           G L L     +V     P+  WL  + A C A     L   PP+    +LR  +G  + H
Sbjct: 3   GLLALLGPAGRVGARVRPRATWLLGATAPC-APPPLALALLPPRLDARLLRTARGDCRGH 61

Query: 90  VSFRRVFSSSATAQGTPEKKEEPDPLQDKSISLYQRFKKTFRQYGKVLIPVHLITSGVWF 149
               +   ++ ++    E+K+     Q KS    Q+ KK F++YG V + +H+  S +  
Sbjct: 62  QDPSQATGTTGSSVSCTEEKK-----QSKS----QQLKKIFQEYGTVGVSLHIGISLISL 112

Query: 150 GTFYYAALKGVNVVPFLELIGLPDSVVSILKNSQSGNALTAYALFKIATPARYTVTLGGT 209
           G FY     GV++   L  +G  +S+V     + +   + AYA+ K+  P R ++TL   
Sbjct: 113 GIFYMVVSSGVDMPAILLKLGFKESLVQSKMAAGTSTFVVAYAIHKLFAPVRISITLVSV 172

Query: 210 SVTVKYLRSHGYMSTP 225
            + V+Y R  G+   P
Sbjct: 173 PLIVRYFRKVGFFKPP 188


>gi|67782330 trinucleotide repeat containing 6B isoform 3 [Homo
           sapiens]
          Length = 1029

 Score = 33.1 bits (74), Expect = 0.27
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 5/51 (9%)

Query: 220 GYMSTPPPVKEYLQDRMEETKELITE-----KMEETKDRLTEKLQETKEKV 265
           G+  TPPP +E  Q++ +E +E + E     K ++ K   T+K+ E K KV
Sbjct: 25  GHGKTPPPGEESKQEKEQEREEQLMEDKKRKKEDKKKKEATQKVTEQKTKV 75


>gi|18921093 transient receptor potential cation channel, subfamily M,
            member 6 [Homo sapiens]
          Length = 2022

 Score = 32.3 bits (72), Expect = 0.45
 Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 3/45 (6%)

Query: 228  VKEYLQDRMEETKELITEKMEETKDRLTE---KLQETKEKVSFKK 269
            V++Y  ++ME+      E++  T +R+TE   +L+E  EKVSF K
Sbjct: 1154 VEKYFHEKMEDVNCSCEERIRVTSERVTEMYFQLKEMNEKVSFIK 1198


>gi|210032509 hypothetical protein LOC100130302 [Homo sapiens]
          Length = 887

 Score = 30.8 bits (68), Expect = 1.3
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 3/45 (6%)

Query: 35  PLLLYNAESKVVLVQGPQKQWLHLSAAQCVAKERRPLDAHPPQPG 79
           PL L        ++ GPQ+Q   L + Q +   ++P  AHPPQPG
Sbjct: 683 PLTLLQVPQGSAVLTGPQQQSHQLVSLQQL---QQPTAAHPPQPG 724


>gi|30089940 Golgi autoantigen, golgin subfamily a, 3 [Homo sapiens]
          Length = 1498

 Score = 30.8 bits (68), Expect = 1.3
 Identities = 12/44 (27%), Positives = 28/44 (63%)

Query: 229  KEYLQDRMEETKELITEKMEETKDRLTEKLQETKEKVSFKKKVE 272
            K  L+  ++E   L ++++EE+++++ E   E +E   F+KK++
Sbjct: 1058 KTLLEKELQEVIALTSQELEESREKVLELEDELQESRGFRKKIK 1101


>gi|5174457 kinetochore associated 2 [Homo sapiens]
          Length = 642

 Score = 30.4 bits (67), Expect = 1.7
 Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 8/68 (11%)

Query: 208 GTSVTVKYLRSHGYMSTPPPVKEYLQDRMEETKELITEKM--EETKDRLTEKLQETKEKV 265
           G +  VKY R+  Y+    P+KE L +  EE  + + +KM  E+T ++L   + E+K  V
Sbjct: 446 GANCLVKY-RAQVYV----PLKELLNETEEEINKALNKKMGLEDTLEQLNAMITESKRSV 500

Query: 266 -SFKKKVE 272
            + K++V+
Sbjct: 501 RTLKEEVQ 508


>gi|149363664 septin 8 isoform d [Homo sapiens]
          Length = 369

 Score = 30.4 bits (67), Expect = 1.7
 Identities = 15/40 (37%), Positives = 24/40 (60%)

Query: 232 LQDRMEETKELITEKMEETKDRLTEKLQETKEKVSFKKKV 271
           LQ + EE +++   K++ET+  L EK +E  EK    K+V
Sbjct: 277 LQRKEEEMRQMFVNKVKETELELKEKERELHEKFEHLKRV 316


>gi|149363638 septin 8 isoform c [Homo sapiens]
          Length = 442

 Score = 30.4 bits (67), Expect = 1.7
 Identities = 15/40 (37%), Positives = 24/40 (60%)

Query: 232 LQDRMEETKELITEKMEETKDRLTEKLQETKEKVSFKKKV 271
           LQ + EE +++   K++ET+  L EK +E  EK    K+V
Sbjct: 337 LQRKEEEMRQMFVNKVKETELELKEKERELHEKFEHLKRV 376


>gi|149363689 septin 8 isoform a [Homo sapiens]
          Length = 483

 Score = 30.4 bits (67), Expect = 1.7
 Identities = 15/40 (37%), Positives = 24/40 (60%)

Query: 232 LQDRMEETKELITEKMEETKDRLTEKLQETKEKVSFKKKV 271
           LQ + EE +++   K++ET+  L EK +E  EK    K+V
Sbjct: 337 LQRKEEEMRQMFVNKVKETELELKEKERELHEKFEHLKRV 376


>gi|149363661 septin 8 isoform b [Homo sapiens]
          Length = 429

 Score = 30.4 bits (67), Expect = 1.7
 Identities = 15/40 (37%), Positives = 24/40 (60%)

Query: 232 LQDRMEETKELITEKMEETKDRLTEKLQETKEKVSFKKKV 271
           LQ + EE +++   K++ET+  L EK +E  EK    K+V
Sbjct: 337 LQRKEEEMRQMFVNKVKETELELKEKERELHEKFEHLKRV 376


>gi|46049114 M-phase phosphoprotein 1 [Homo sapiens]
          Length = 1780

 Score = 30.4 bits (67), Expect = 1.7
 Identities = 16/46 (34%), Positives = 29/46 (63%), Gaps = 2/46 (4%)

Query: 229  KEYLQDRMEETKELITE--KMEETKDRLTEKLQETKEKVSFKKKVE 272
            +E+LQD ++ TK+L  +  K++E   +LT  LQ+ K  +  K++ E
Sbjct: 1165 QEHLQDSVKNTKDLNVKELKLKEEITQLTNNLQDMKHLLQLKEEEE 1210


>gi|157785548 PAS domain containing 1 [Homo sapiens]
          Length = 773

 Score = 30.0 bits (66), Expect = 2.2
 Identities = 15/38 (39%), Positives = 27/38 (71%), Gaps = 1/38 (2%)

Query: 233 QDRMEETKELITEKMEETKDRLTEKLQETKEKVSFKKK 270
           Q +M+E K+L  +KM+E K +L E+ ++ K+K+  +KK
Sbjct: 512 QKKMQEKKKLQEQKMQE-KKKLQEQRRQKKKKLQERKK 548


>gi|11386183 WAS protein family, member 2 [Homo sapiens]
          Length = 498

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 13/68 (19%)

Query: 210 SVTVKYLRSHGYMSTPPPVKE---YLQDRMEETK---------ELITEKM-EETKDRLTE 256
           S+ V  L ++    TPPP+     Y  D  E  K         +L  EKM ++TKD + E
Sbjct: 115 SLPVPVLETYNTCDTPPPLNNLTPYRDDGKEALKFYTDPSYFFDLWKEKMLQDTKDIMKE 174

Query: 257 KLQETKEK 264
           K +  KEK
Sbjct: 175 KRKHRKEK 182


>gi|188497714 transmembrane and coiled-coil domain family 3 [Homo
           sapiens]
          Length = 477

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 13/59 (22%), Positives = 33/59 (55%)

Query: 210 SVTVKYLRSHGYMSTPPPVKEYLQDRMEETKELITEKMEETKDRLTEKLQETKEKVSFK 268
           ++ V++ R +G++S     + Y  +R+E+    +T+  +     L ++L   +EKV+++
Sbjct: 310 ALKVQFKREYGFISQTLQEERYRYERLEDQLHDLTDLHQHETANLKQELASIEEKVAYQ 368


>gi|20149640 dual oxidase 1 precursor [Homo sapiens]
          Length = 1551

 Score = 29.3 bits (64), Expect = 3.8
 Identities = 19/87 (21%), Positives = 42/87 (48%), Gaps = 8/87 (9%)

Query: 70   PLDAHPPQPGVLRHKQGKQHVSFRRVFSSSATAQGTPEKKEEPDPLQDKSISLYQRFKKT 129
            P+D  PPQ   +R + GK+  SF+ +  + A       +++       +++  ++RF + 
Sbjct: 989  PMDTDPPQE--IRRRFGKKVTSFQPLLFTEA------HREKFQRSCLHQTVQQFKRFIEN 1040

Query: 130  FRQYGKVLIPVHLITSGVWFGTFYYAA 156
            +R++   +   + I  G++    YY A
Sbjct: 1041 YRRHIGCVAVFYAIAGGLFLERAYYYA 1067


>gi|28872751 dual oxidase 1 precursor [Homo sapiens]
          Length = 1551

 Score = 29.3 bits (64), Expect = 3.8
 Identities = 19/87 (21%), Positives = 42/87 (48%), Gaps = 8/87 (9%)

Query: 70   PLDAHPPQPGVLRHKQGKQHVSFRRVFSSSATAQGTPEKKEEPDPLQDKSISLYQRFKKT 129
            P+D  PPQ   +R + GK+  SF+ +  + A       +++       +++  ++RF + 
Sbjct: 989  PMDTDPPQE--IRRRFGKKVTSFQPLLFTEA------HREKFQRSCLHQTVQQFKRFIEN 1040

Query: 130  FRQYGKVLIPVHLITSGVWFGTFYYAA 156
            +R++   +   + I  G++    YY A
Sbjct: 1041 YRRHIGCVAVFYAIAGGLFLERAYYYA 1067


>gi|31563330 A-kinase anchor protein 13 isoform 1 [Homo sapiens]
          Length = 2817

 Score = 29.3 bits (64), Expect = 3.8
 Identities = 13/41 (31%), Positives = 29/41 (70%), Gaps = 2/41 (4%)

Query: 231  YLQDRMEETKELITEKMEETKDRLTEKLQETKEKVSFKKKV 271
            Y++++M  +K+  +++ E+ KD++ EK +++K+K   KK V
Sbjct: 1755 YIKNKMSSSKK--SKEKEKEKDKIKEKEKDSKDKEKDKKTV 1793


>gi|21493029 A-kinase anchor protein 13 isoform 2 [Homo sapiens]
          Length = 2813

 Score = 29.3 bits (64), Expect = 3.8
 Identities = 13/41 (31%), Positives = 29/41 (70%), Gaps = 2/41 (4%)

Query: 231  YLQDRMEETKELITEKMEETKDRLTEKLQETKEKVSFKKKV 271
            Y++++M  +K+  +++ E+ KD++ EK +++K+K   KK V
Sbjct: 1751 YIKNKMSSSKK--SKEKEKEKDKIKEKEKDSKDKEKDKKTV 1789


>gi|239752280 PREDICTED: similar to family with sequence similarity
           48, member B2 [Homo sapiens]
          Length = 779

 Score = 28.9 bits (63), Expect = 5.0
 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 4/45 (8%)

Query: 35  PLLLYNAESKVVLVQGPQKQWLHLSAAQCVAKERRPLDAHPPQPG 79
           PL L   +   VL  GPQ+Q   L + Q +   ++P  AHPPQPG
Sbjct: 610 PLTLQVPQGWAVLT-GPQQQSHQLVSLQQL---QQPTAAHPPQPG 650


>gi|41406064 myosin, heavy polypeptide 10, non-muscle [Homo sapiens]
          Length = 1976

 Score = 28.9 bits (63), Expect = 5.0
 Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 230  EYLQDRMEETKELITEKMEETKDRLTEKLQETKEKVSFKKKV 271
            E L  R+EE K L  +K+E+TK+RL ++L +    +  +++V
Sbjct: 1402 EALSQRLEE-KALAYDKLEKTKNRLQQELDDLTVDLDHQRQV 1442


>gi|210032463 family with sequence similarity 48, member B2 [Homo
           sapiens]
          Length = 817

 Score = 28.9 bits (63), Expect = 5.0
 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 4/45 (8%)

Query: 35  PLLLYNAESKVVLVQGPQKQWLHLSAAQCVAKERRPLDAHPPQPG 79
           PL L   +   VL  GPQ+Q   L + Q +   ++P  AHPPQPG
Sbjct: 648 PLTLQVPQGWAVLT-GPQQQSHQLVSLQQL---QQPTAAHPPQPG 688


>gi|148886752 immunoglobulin superfamily, member 9B [Homo sapiens]
          Length = 1349

 Score = 28.9 bits (63), Expect = 5.0
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 10/73 (13%)

Query: 84  KQGKQHVSFRRVFSSSATAQGTPEKKEEPDPLQDKSISLYQRFKKTF--RQY-------- 133
           K   + +   R  S S+  QG P  K    P ++K +SLY++ K+    ++Y        
Sbjct: 781 KVSPESIRTLRAPSESSDDQGQPAAKRMLSPTREKELSLYKKTKRAISSKKYSVAKAEAE 840

Query: 134 GKVLIPVHLITSG 146
            +   P+ LI+ G
Sbjct: 841 AEATTPIELISRG 853


>gi|4503969 growth differentiation factor 5 preproprotein [Homo
           sapiens]
          Length = 501

 Score = 28.5 bits (62), Expect = 6.5
 Identities = 20/66 (30%), Positives = 29/66 (43%)

Query: 50  GPQKQWLHLSAAQCVAKERRPLDAHPPQPGVLRHKQGKQHVSFRRVFSSSATAQGTPEKK 109
           G + Q      A+  AKER PL  +  +PG   +  G  + + R    +  T   T  KK
Sbjct: 32  GQRPQGTRPGLAKAEAKERPPLARNVFRPGGHSYGGGATNANARAKGGTGQTGGLTQPKK 91

Query: 110 EEPDPL 115
           +EP  L
Sbjct: 92  DEPKKL 97


>gi|239745153 PREDICTED: similar to Putative golgin subfamily A
           member 6-like protein 6 [Homo sapiens]
          Length = 655

 Score = 28.5 bits (62), Expect = 6.5
 Identities = 15/38 (39%), Positives = 27/38 (71%), Gaps = 5/38 (13%)

Query: 228 VKEYLQDRMEETKELITEKMEETKDRLTEKLQETKEKV 265
           ++E +QD+ E+ +E + EKM+E +    EK+QE +EK+
Sbjct: 439 LEEMMQDQEEKLRE-VEEKMQEEE----EKMQEQEEKI 471


>gi|239745127 PREDICTED: similar to Putative golgin subfamily A
           member 6-like protein 6 [Homo sapiens]
          Length = 655

 Score = 28.5 bits (62), Expect = 6.5
 Identities = 15/38 (39%), Positives = 27/38 (71%), Gaps = 5/38 (13%)

Query: 228 VKEYLQDRMEETKELITEKMEETKDRLTEKLQETKEKV 265
           ++E +QD+ E+ +E + EKM+E +    EK+QE +EK+
Sbjct: 439 LEEMMQDQEEKLRE-VEEKMQEEE----EKMQEQEEKI 471


>gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens]
          Length = 1020

 Score = 28.5 bits (62), Expect = 6.5
 Identities = 16/44 (36%), Positives = 25/44 (56%)

Query: 227 PVKEYLQDRMEETKELITEKMEETKDRLTEKLQETKEKVSFKKK 270
           P KE  + ++EE KE   EK +E+K    ++  E K+KV   +K
Sbjct: 865 PKKEAPKPKVEEKKEPAVEKPKESKVEAKKEEAEDKKKVPTPEK 908


>gi|38570109 CAP-binding protein complex interacting protein 1
           isoform b [Homo sapiens]
          Length = 1349

 Score = 28.5 bits (62), Expect = 6.5
 Identities = 13/50 (26%), Positives = 25/50 (50%)

Query: 79  GVLRHKQGKQHVSFRRVFSSSATAQGTPEKKEEPDPLQDKSISLYQRFKK 128
           GV RH     ++ F R   +S +    P++KEE  P+   +++  +  +K
Sbjct: 861 GVSRHDNAINYLDFLRAVENSKSTGAQPKEKEESMPINFATLNPQEAVRK 910


>gi|38570107 CAP-binding protein complex interacting protein 1 isoform
            a [Homo sapiens]
          Length = 1501

 Score = 28.5 bits (62), Expect = 6.5
 Identities = 13/50 (26%), Positives = 25/50 (50%)

Query: 79   GVLRHKQGKQHVSFRRVFSSSATAQGTPEKKEEPDPLQDKSISLYQRFKK 128
            GV RH     ++ F R   +S +    P++KEE  P+   +++  +  +K
Sbjct: 1013 GVSRHDNAINYLDFLRAVENSKSTGAQPKEKEESMPINFATLNPQEAVRK 1062


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.132    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,257,617
Number of Sequences: 37866
Number of extensions: 510478
Number of successful extensions: 2341
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 2293
Number of HSP's gapped (non-prelim): 61
length of query: 272
length of database: 18,247,518
effective HSP length: 101
effective length of query: 171
effective length of database: 14,423,052
effective search space: 2466341892
effective search space used: 2466341892
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.