Guide to the Human Genome
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Name: FAM160B1 Sequence: fasta or formatted (738aa) NCBI GI: 205277429
Description:

hypothetical protein LOC57700 isoform b

Referenced in:

Additional Genes in Development

Other entries for this name:
alt prot [765aa] hypothetical protein LOC57700 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         40           3
 C cysteine            2.4         18           1
 D aspartate           5.8         43           2
 E glutamate           8.3         61           2
 F phenylalanine       3.4         25           2
 G glycine             4.1         30           1
 H histidine           3.7         27           2
 I isoleucine          4.9         36           1
 K lysine              4.6         34           1
 L leucine            14.0        103           3
 M methionine          2.3         17           1
 N asparagine          3.4         25           1
 P proline             6.6         49           2
 Q glutamine           4.5         33           2
 R arginine            4.5         33           1
 S serine              6.6         49           3
 T threonine           5.4         40           1
 V valine              6.2         46           2
 W tryptophan          1.1          8           2
 Y tyrosine            2.8         21           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC57700 isoform b 
FAM160B1              0.986   hypothetical protein LOC57700 isoform a 
FAM160B2              0.435   retinoic acid induced 16 
FAM160A2              0.033   hypothetical protein LOC84067 isoform 2 
FAM160A2              0.033   hypothetical protein LOC84067 isoform 1 
FAM160A1              0.026   hypothetical protein LOC729830 
RNF157                0.007   ring finger protein 157 
ARHGAP10              0.007   Rho GTPase activating protein 10 
CASP8AP2              0.006   caspase 8 associated protein 2 
CASP8AP2              0.006   caspase 8 associated protein 2 
CASP8AP2              0.006   caspase 8 associated protein 2 
SPAG17                0.005   sperm associated antigen 17 
APBB2                 0.005   amyloid beta A4 precursor protein-binding, family B,...
SLC39A10              0.005   solute carrier family 39 (zinc transporter), member...
SLC39A10              0.005   solute carrier family 39 (zinc transporter), member ...
SAFB                  0.005   scaffold attachment factor B 
LPIN1                 0.003   lipin 1 
CUL9                  0.003   p53-associated parkin-like cytoplasmic protein [Homo...
LOC390561             0.003   PREDICTED: similar to hect domain and RLD 2 
CRIM1                 0.003   cysteine-rich motor neuron 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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