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Search of human proteins with 14917113
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|14917113 signal recognition particle receptor, beta subunit
[Homo sapiens]
(271 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|14917113 signal recognition particle receptor, beta subunit [... 521 e-148
gi|13376574 ADP-ribosylation factor-like 14 [Homo sapiens] 50 2e-06
gi|148612885 ADP-ribosylation factor-like 2 [Homo sapiens] 47 2e-05
gi|6912244 ADP-ribosylation factor-like 5A isoform 1 [Homo sapiens] 43 3e-04
gi|4502203 ADP-ribosylation factor 3 [Homo sapiens] 42 4e-04
gi|30520350 ADP-ribosylation factor-like 8 [Homo sapiens] 42 7e-04
gi|66879664 ADP-ribosylation factor 1 [Homo sapiens] 41 0.001
gi|66879662 ADP-ribosylation factor 1 [Homo sapiens] 41 0.001
gi|66879660 ADP-ribosylation factor 1 [Homo sapiens] 41 0.001
gi|4502201 ADP-ribosylation factor 1 [Homo sapiens] 41 0.001
gi|6552296 ADP-ribosylation factor-like 4C [Homo sapiens] 40 0.002
gi|4502205 ADP-ribosylation factor 4 [Homo sapiens] 40 0.002
gi|4757774 ADP-ribosylation factor-like 3 [Homo sapiens] 39 0.004
gi|27734809 ADP-ribosylation factor-like 10 [Homo sapiens] 39 0.004
gi|9506653 ADP-ribosylation factor-like 15 [Homo sapiens] 38 0.011
gi|4502209 ADP-ribosylation factor 5 [Homo sapiens] 37 0.018
gi|41327767 ADP-ribosylation factor-like 4D [Homo sapiens] 37 0.024
gi|4502211 ADP-ribosylation factor 6 [Homo sapiens] 36 0.031
gi|19923979 ADP-ribosylation factor-like 11 [Homo sapiens] 35 0.053
gi|12232463 RAB, member RAS oncogene family-like 5 isoform a [Ho... 34 0.12
gi|31543063 glycerate kinase isoform 1 [Homo sapiens] 34 0.15
gi|4502227 ADP-ribosylation factor-like 1 [Homo sapiens] 34 0.15
gi|15208643 ADP-ribosylation factor domain protein 1 isoform gam... 33 0.26
gi|15208641 ADP-ribosylation factor domain protein 1 isoform bet... 33 0.26
gi|4502197 ADP-ribosylation factor domain protein 1 isoform alph... 33 0.26
gi|166064027 cyclin-dependent kinase-like 3 isoform 1 [Homo sapi... 32 0.77
gi|166064025 cyclin-dependent kinase-like 3 isoform 2 [Homo sapi... 32 0.77
gi|53729339 mitochondrial translational initiation factor 2 prec... 30 2.2
gi|53729337 mitochondrial translational initiation factor 2 prec... 30 2.2
gi|21553323 DIRAS family, GTP-binding RAS-like 1 [Homo sapiens] 30 2.2
>gi|14917113 signal recognition particle receptor, beta subunit
[Homo sapiens]
Length = 271
Score = 521 bits (1342), Expect = e-148
Identities = 271/271 (100%), Positives = 271/271 (100%)
Query: 1 MASADSRRVADGGGAGGTFQPYLDTLRQELQQTDPTLLSVVVAVLAVLLTLVFWKLIRSR 60
MASADSRRVADGGGAGGTFQPYLDTLRQELQQTDPTLLSVVVAVLAVLLTLVFWKLIRSR
Sbjct: 1 MASADSRRVADGGGAGGTFQPYLDTLRQELQQTDPTLLSVVVAVLAVLLTLVFWKLIRSR 60
Query: 61 RSSQRAVLLVGLCDSGKTLLFVRLLTGLYRDTQTSITDSCAVYRVNNNRGNSLTLIDLPG 120
RSSQRAVLLVGLCDSGKTLLFVRLLTGLYRDTQTSITDSCAVYRVNNNRGNSLTLIDLPG
Sbjct: 61 RSSQRAVLLVGLCDSGKTLLFVRLLTGLYRDTQTSITDSCAVYRVNNNRGNSLTLIDLPG 120
Query: 121 HESLRLQFLERFKSSAGAIVFVVDSAAFQREVKDVAEFLYQVLIDSMGLKNTPSFLIACN 180
HESLRLQFLERFKSSAGAIVFVVDSAAFQREVKDVAEFLYQVLIDSMGLKNTPSFLIACN
Sbjct: 121 HESLRLQFLERFKSSAGAIVFVVDSAAFQREVKDVAEFLYQVLIDSMGLKNTPSFLIACN 180
Query: 181 KQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLYSSSTAPAQLGKKGKEFEFSQLPLK 240
KQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLYSSSTAPAQLGKKGKEFEFSQLPLK
Sbjct: 181 KQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLYSSSTAPAQLGKKGKEFEFSQLPLK 240
Query: 241 VEFLECSAKGGRGDVGSADIQDLEKWLAKIA 271
VEFLECSAKGGRGDVGSADIQDLEKWLAKIA
Sbjct: 241 VEFLECSAKGGRGDVGSADIQDLEKWLAKIA 271
>gi|13376574 ADP-ribosylation factor-like 14 [Homo sapiens]
Length = 192
Score = 50.1 bits (118), Expect = 2e-06
Identities = 43/141 (30%), Positives = 74/141 (52%), Gaps = 6/141 (4%)
Query: 58 RSRRSSQRAVLLVGLCDSGKTLLFVRLLTGLYRDTQTSITDSCAVYRVNNNRGNSLTLID 117
++ ++ Q VLL+GL +GK+ L +L L +D T T V + R SLT+ D
Sbjct: 7 KNPQTKQAQVLLLGLDSAGKSTLLYKL--KLAKDITTIPTIGFNVEMIELERNLSLTVWD 64
Query: 118 LPGHESLRLQFLERFKSSAGAIVFVVDSAAFQREVKDVAEFLYQVLIDSMGLKNTPSFLI 177
+ G E +R + + + +V+VVDS QR + +F + ++ + +KN P L+
Sbjct: 65 VGGQEKMRTVW-GCYCENTDGLVYVVDSTDKQRLEESQRQF--EHILKNEHIKNVPVVLL 121
Query: 178 ACNKQDIAMAKSAKLIQQQLE 198
A NKQD+ A +A+ I + +
Sbjct: 122 A-NKQDMPGALTAEDITRMFK 141
>gi|148612885 ADP-ribosylation factor-like 2 [Homo sapiens]
Length = 184
Score = 46.6 bits (109), Expect = 2e-05
Identities = 42/139 (30%), Positives = 73/139 (52%), Gaps = 7/139 (5%)
Query: 60 RRSSQRAVLLVGLCDSGKTLLFVRLLTGLYRDTQTSITDSCAVYRVNNNRGNSLTLIDLP 119
++ + +L++GL ++GKT + ++ G D T + +RG L + D+
Sbjct: 12 QKERELRLLMLGLDNAGKTTI-LKKFNG--EDIDTISPTLGFNIKTLEHRGFKLNIWDVG 68
Query: 120 GHESLRLQFLERFKSSAGAIVFVVDSAAFQREVKDVAEFLYQVLIDSMGLKNTPSFLIAC 179
G +SLR + F+S+ G +++VVDSA QR ++D L +L++ T LI
Sbjct: 69 GQKSLRSYWRNYFESTDG-LIWVVDSADRQR-MQDCQRELQSLLVEERLAGAT--LLIFA 124
Query: 180 NKQDIAMAKSAKLIQQQLE 198
NKQD+ A S+ I++ LE
Sbjct: 125 NKQDLPGALSSNAIREVLE 143
>gi|6912244 ADP-ribosylation factor-like 5A isoform 1 [Homo sapiens]
Length = 179
Score = 43.1 bits (100), Expect = 3e-04
Identities = 39/148 (26%), Positives = 68/148 (45%), Gaps = 7/148 (4%)
Query: 51 LVFWKLIRSRRSSQRAVLLVGLCDSGKTLLFVRLLTGLYRDTQTSITDSCAVYRVNNNRG 110
++F ++ R + V++VGL ++GKT + + T +I + +NN R
Sbjct: 3 ILFTRIWRLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTR- 61
Query: 111 NSLTLIDLPGHESLRLQFLERFKSSAGAIVFVVDSAAFQREVKDVAEFLYQVLIDSMGLK 170
+ D+ G ESLR + + ++ ++ VVDS +R + E LY++L K
Sbjct: 62 --FLMWDIGGQESLRSSW-NTYYTNTEFVIVVVDSTDRER-ISVTREELYKMLAHEDLRK 117
Query: 171 NTPSFLIACNKQDIAMAKSAKLIQQQLE 198
LI NKQD+ + I Q L+
Sbjct: 118 --AGLLIFANKQDVKECMTVAEISQFLK 143
>gi|4502203 ADP-ribosylation factor 3 [Homo sapiens]
Length = 181
Score = 42.4 bits (98), Expect = 4e-04
Identities = 41/147 (27%), Positives = 71/147 (48%), Gaps = 8/147 (5%)
Query: 52 VFWKLIRSR-RSSQRAVLLVGLCDSGKTLLFVRLLTGLYRDTQTSITDSCAVYRVNNNRG 110
+F L++S + +L+VGL +GKT + +L G T +I + N
Sbjct: 4 IFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN--- 60
Query: 111 NSLTLIDLPGHESLRLQFLERFKSSAGAIVFVVDSAAFQREVKDVAEFLYQVLIDSMGLK 170
S T+ D+ G + +R + F+++ G ++FVVDS +R V + E L ++L +
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQG-LIFVVDSNDRER-VNEAREELMRMLAEDE--L 116
Query: 171 NTPSFLIACNKQDIAMAKSAKLIQQQL 197
L+ NKQD+ A +A I +L
Sbjct: 117 RDAVLLVFANKQDLPNAMNAAEITDKL 143
>gi|30520350 ADP-ribosylation factor-like 8 [Homo sapiens]
Length = 179
Score = 41.6 bits (96), Expect = 7e-04
Identities = 43/147 (29%), Positives = 68/147 (46%), Gaps = 7/147 (4%)
Query: 51 LVFWKLIRSRRSSQRAVLLVGLCDSGKTLLFVRLLTGLYRDTQTSITDSCAVYRVNNNRG 110
L+F KL + + V++VGL ++GKT + + L T +I + V N
Sbjct: 3 LIFAKLWSLFCNQEHKVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVEEIVVKNTH- 61
Query: 111 NSLTLIDLPGHESLRLQFLERFKSSAGAIVFVVDSAAFQREVKDVAEFLYQVLIDSMGLK 170
+ D+ G ESLR + + S+ I+ VVDS +R + E LY++L K
Sbjct: 62 --FLMWDIGGQESLRSSW-NTYYSNTEFIILVVDSIDRER-LAITKEELYRMLAHEDLRK 117
Query: 171 NTPSFLIACNKQDIAMAKSAKLIQQQL 197
+ LI NKQD+ +A I + L
Sbjct: 118 --AAVLIFANKQDMKGCMTAAEISKYL 142
>gi|66879664 ADP-ribosylation factor 1 [Homo sapiens]
Length = 181
Score = 41.2 bits (95), Expect = 0.001
Identities = 38/131 (29%), Positives = 64/131 (48%), Gaps = 7/131 (5%)
Query: 67 VLLVGLCDSGKTLLFVRLLTGLYRDTQTSITDSCAVYRVNNNRGNSLTLIDLPGHESLRL 126
+L+VGL +GKT + +L G T +I + N S T+ D+ G + +R
Sbjct: 20 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN---ISFTVWDVGGQDKIRP 76
Query: 127 QFLERFKSSAGAIVFVVDSAAFQREVKDVAEFLYQVLIDSMGLKNTPSFLIACNKQDIAM 186
+ F+++ G ++FVVDS +R V + E L ++L + L+ NKQD+
Sbjct: 77 LWRHYFQNTQG-LIFVVDSNDRER-VNEAREELMRMLAEDE--LRDAVLLVFANKQDLPN 132
Query: 187 AKSAKLIQQQL 197
A +A I +L
Sbjct: 133 AMNAAEITDKL 143
>gi|66879662 ADP-ribosylation factor 1 [Homo sapiens]
Length = 181
Score = 41.2 bits (95), Expect = 0.001
Identities = 38/131 (29%), Positives = 64/131 (48%), Gaps = 7/131 (5%)
Query: 67 VLLVGLCDSGKTLLFVRLLTGLYRDTQTSITDSCAVYRVNNNRGNSLTLIDLPGHESLRL 126
+L+VGL +GKT + +L G T +I + N S T+ D+ G + +R
Sbjct: 20 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN---ISFTVWDVGGQDKIRP 76
Query: 127 QFLERFKSSAGAIVFVVDSAAFQREVKDVAEFLYQVLIDSMGLKNTPSFLIACNKQDIAM 186
+ F+++ G ++FVVDS +R V + E L ++L + L+ NKQD+
Sbjct: 77 LWRHYFQNTQG-LIFVVDSNDRER-VNEAREELMRMLAEDE--LRDAVLLVFANKQDLPN 132
Query: 187 AKSAKLIQQQL 197
A +A I +L
Sbjct: 133 AMNAAEITDKL 143
>gi|66879660 ADP-ribosylation factor 1 [Homo sapiens]
Length = 181
Score = 41.2 bits (95), Expect = 0.001
Identities = 38/131 (29%), Positives = 64/131 (48%), Gaps = 7/131 (5%)
Query: 67 VLLVGLCDSGKTLLFVRLLTGLYRDTQTSITDSCAVYRVNNNRGNSLTLIDLPGHESLRL 126
+L+VGL +GKT + +L G T +I + N S T+ D+ G + +R
Sbjct: 20 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN---ISFTVWDVGGQDKIRP 76
Query: 127 QFLERFKSSAGAIVFVVDSAAFQREVKDVAEFLYQVLIDSMGLKNTPSFLIACNKQDIAM 186
+ F+++ G ++FVVDS +R V + E L ++L + L+ NKQD+
Sbjct: 77 LWRHYFQNTQG-LIFVVDSNDRER-VNEAREELMRMLAEDE--LRDAVLLVFANKQDLPN 132
Query: 187 AKSAKLIQQQL 197
A +A I +L
Sbjct: 133 AMNAAEITDKL 143
>gi|4502201 ADP-ribosylation factor 1 [Homo sapiens]
Length = 181
Score = 41.2 bits (95), Expect = 0.001
Identities = 38/131 (29%), Positives = 64/131 (48%), Gaps = 7/131 (5%)
Query: 67 VLLVGLCDSGKTLLFVRLLTGLYRDTQTSITDSCAVYRVNNNRGNSLTLIDLPGHESLRL 126
+L+VGL +GKT + +L G T +I + N S T+ D+ G + +R
Sbjct: 20 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN---ISFTVWDVGGQDKIRP 76
Query: 127 QFLERFKSSAGAIVFVVDSAAFQREVKDVAEFLYQVLIDSMGLKNTPSFLIACNKQDIAM 186
+ F+++ G ++FVVDS +R V + E L ++L + L+ NKQD+
Sbjct: 77 LWRHYFQNTQG-LIFVVDSNDRER-VNEAREELMRMLAEDE--LRDAVLLVFANKQDLPN 132
Query: 187 AKSAKLIQQQL 197
A +A I +L
Sbjct: 133 AMNAAEITDKL 143
>gi|6552296 ADP-ribosylation factor-like 4C [Homo sapiens]
Length = 192
Score = 40.4 bits (93), Expect = 0.002
Identities = 42/163 (25%), Positives = 76/163 (46%), Gaps = 14/163 (8%)
Query: 67 VLLVGLCDSGKTLLFVRLLTGLYRDTQTSITDSCAVYRVNNN--RGNSLTLIDLPGHESL 124
++++GL +GKT + RL + +T +I + +++N +G S D+ G E L
Sbjct: 16 IVMLGLDSAGKTTVLYRLKFNEFVNTVPTIGFNTEKIKLSNGTAKGISCHFWDVGGQEKL 75
Query: 125 RLQFLERFKSSAGAIVFVVDSAAFQREVKDVAEFLYQVLIDSMGLKNTPSFLIACNKQDI 184
R + + I++VVDS R +++ L++V + + TP +IA NKQD+
Sbjct: 76 R-PLWKSYSRCTDGIIYVVDSVDVDR-LEEAKTELHKVTKFAEN-QGTPLLVIA-NKQDL 131
Query: 185 AMAKSAKLIQQQLEKELNTLRVTRSAAPSTLYSSSTAPAQLGK 227
+ I++QL P+T Y A A +G+
Sbjct: 132 PKSLPVAEIEKQL--------ALHELIPATTYHVQPACAIIGE 166
>gi|4502205 ADP-ribosylation factor 4 [Homo sapiens]
Length = 180
Score = 40.0 bits (92), Expect = 0.002
Identities = 46/159 (28%), Positives = 78/159 (49%), Gaps = 14/159 (8%)
Query: 64 QRAVLLVGLCDSGKTLLFVRLLTGLYRDTQTSITDSCAVYRVNNNRGNSLTLIDLPGHES 123
Q +L+VGL +GKT + +L G T +I + N T+ D+ G +
Sbjct: 17 QMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN---ICFTVWDVGGQDR 73
Query: 124 LRLQFLERFKSSAGAIVFVVDSAAFQREVKDVAEFLYQ-VLIDSMGLKNTPSFLIACNKQ 182
+R + F+++ G ++FVVDS +R +++VA+ L + +L+D + L+ NKQ
Sbjct: 74 IRPLWKHYFQNTQG-LIFVVDSNDRER-IQEVADELQKMLLVDEL---RDAVLLLFANKQ 128
Query: 183 DI--AMAKSA---KLIQQQLEKELNTLRVTRSAAPSTLY 216
D+ AMA S KL Q L ++ T + + LY
Sbjct: 129 DLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLY 167
>gi|4757774 ADP-ribosylation factor-like 3 [Homo sapiens]
Length = 182
Score = 39.3 bits (90), Expect = 0.004
Identities = 39/153 (25%), Positives = 76/153 (49%), Gaps = 17/153 (11%)
Query: 57 IRSRRSSQRAVLLVGLCDSGKTLLFVRLLT-GLYRDTQTSITDSCAVYRVNNNRGNSLTL 115
++S + +LL+GL ++GKT L +L + + T T + +V ++G L +
Sbjct: 10 LKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSV----QSQGFKLNV 65
Query: 116 IDLPGHESLRLQFLERFKSSAGAIVFVVDSA---AFQREVKDVAEFLYQVLIDSMGLKNT 172
D+ G +R + + + + +++V+DSA F+ +++AE L + + + +
Sbjct: 66 WDIGGQRKIR-PYWKNYFENTDILIYVIDSADRKRFEETGQELAELLEEEKLSCVPV--- 121
Query: 173 PSFLIACNKQDIAMAKSAKLIQQQLEKELNTLR 205
LI NKQD+ A A I + L L+T+R
Sbjct: 122 ---LIFANKQDLLTAAPASEIAEGL--NLHTIR 149
>gi|27734809 ADP-ribosylation factor-like 10 [Homo sapiens]
Length = 244
Score = 39.3 bits (90), Expect = 0.004
Identities = 46/164 (28%), Positives = 81/164 (49%), Gaps = 21/164 (12%)
Query: 64 QRAVLLVGLCDSGKTLLFVRLLTGLYRDTQTSITDSCAVYRVNNNR----GNSLTLIDLP 119
QR VL++GL +GK+ F+R+L+G + + + N+ R + L+++
Sbjct: 77 QREVLVLGLDGAGKST-FLRVLSG-----KPPLEGHIPTWGFNSVRLPTKDFEVDLLEIG 130
Query: 120 GHESLRLQFLERFKSSAGAIVFVVDSAAFQREVKDVAEFLYQVLIDSMGLKNTPSFLIAC 179
G ++LR + E F S +VFVVDSA R + + L+++L L ++
Sbjct: 131 GSQNLRFYWKE-FVSEVDVLVFVVDSADRLR-LPWARQELHKLLDKDPDL----PVVVVA 184
Query: 180 NKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLYSSSTAPA 223
NKQD++ A S +Q++L L+ + L ++S APA
Sbjct: 185 NKQDLSEAMSMGELQREL-----GLQAIDNQREVFLLAASIAPA 223
>gi|9506653 ADP-ribosylation factor-like 15 [Homo sapiens]
Length = 204
Score = 37.7 bits (86), Expect = 0.011
Identities = 35/134 (26%), Positives = 64/134 (47%), Gaps = 6/134 (4%)
Query: 67 VLLVGLCDSGKTLLFVRLLTGLYRDTQTSITDSCAVYRVNNNRGNSLTLIDLPGHESLRL 126
++ +GL SGKT L +L + + ++ S N L + +L G +++R
Sbjct: 35 LVCIGLTGSGKTSLLSKLCSESPDNVVSTTGFSIKAVPFQNA---ILNVKELGGADNIRK 91
Query: 127 QFLERFKSSAGAIVFVVDSAAFQREVKDVAEFLYQVLIDSMGLKNTPSFLIACNKQDIAM 186
+ ++ S G ++FV+DSA+ + +++ L+ L T FLI N QD
Sbjct: 92 YWSRYYQGSQG-VIFVLDSASSEDDLEAARNELHSALQHPQ--LCTLPFLILANHQDKPA 148
Query: 187 AKSAKLIQQQLEKE 200
A+S + I++ E E
Sbjct: 149 ARSVQEIKKYFELE 162
>gi|4502209 ADP-ribosylation factor 5 [Homo sapiens]
Length = 180
Score = 37.0 bits (84), Expect = 0.018
Identities = 36/134 (26%), Positives = 64/134 (47%), Gaps = 7/134 (5%)
Query: 64 QRAVLLVGLCDSGKTLLFVRLLTGLYRDTQTSITDSCAVYRVNNNRGNSLTLIDLPGHES 123
Q +L+VGL +GKT + +L G T +I + N T+ D+ G +
Sbjct: 17 QMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN---ICFTVWDVGGQDK 73
Query: 124 LRLQFLERFKSSAGAIVFVVDSAAFQREVKDVAEFLYQVLIDSMGLKNTPSFLIACNKQD 183
+R + F+++ G ++FVVDS +R V++ A+ L ++L + L+ NKQD
Sbjct: 74 IRPLWRHYFQNTQG-LIFVVDSNDRER-VQESADELQKMLQEDE--LRDAVLLVFANKQD 129
Query: 184 IAMAKSAKLIQQQL 197
+ A + +L
Sbjct: 130 MPNAMPVSELTDKL 143
>gi|41327767 ADP-ribosylation factor-like 4D [Homo sapiens]
Length = 201
Score = 36.6 bits (83), Expect = 0.024
Identities = 38/135 (28%), Positives = 69/135 (51%), Gaps = 10/135 (7%)
Query: 67 VLLVGLCDSGKTLLFVRLLTGLYRDTQTSITDSCAVYRV--NNNRGNSLTLIDLPGHESL 124
V+++GL +GKT L RL + + + + RV +RG + + D+ G E L
Sbjct: 24 VVVIGLDSAGKTSLLYRLKFKEFVQSVPTKGFNTEKIRVPLGGSRGITFQVWDVGGQEKL 83
Query: 125 RLQFLERFKSSAGAIVFVVDSAAFQREVKDVAEFLYQV--LIDSMGLKNTPSFLIACNKQ 182
R + + + G +VFVVD+A +R +++ L+++ D+ G+ L+ NKQ
Sbjct: 84 RPLWRSYTRRTDG-LVFVVDAAEAER-LEEAKVELHRISRASDNQGV----PVLVLANKQ 137
Query: 183 DIAMAKSAKLIQQQL 197
D A SA ++++L
Sbjct: 138 DQPGALSAAEVEKRL 152
>gi|4502211 ADP-ribosylation factor 6 [Homo sapiens]
Length = 175
Score = 36.2 bits (82), Expect = 0.031
Identities = 33/136 (24%), Positives = 64/136 (47%), Gaps = 7/136 (5%)
Query: 62 SSQRAVLLVGLCDSGKTLLFVRLLTGLYRDTQTSITDSCAVYRVNNNRGNSLTLIDLPGH 121
+ + +L++GL +GKT + +L G T ++ + N + N + D+ G
Sbjct: 11 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFN---VWDVGGQ 67
Query: 122 ESLRLQFLERFKSSAGAIVFVVDSAAFQREVKDVAEFLYQVLIDSMGLKNTPSFLIACNK 181
+ +R + + + G ++FVVD A R + + + L++++ D LI NK
Sbjct: 68 DKIRPLWRHYYTGTQG-LIFVVDCADRDR-IDEARQELHRIINDRE--MRDAIILIFANK 123
Query: 182 QDIAMAKSAKLIQQQL 197
QD+ A IQ++L
Sbjct: 124 QDLPDAMKPHEIQEKL 139
>gi|19923979 ADP-ribosylation factor-like 11 [Homo sapiens]
Length = 196
Score = 35.4 bits (80), Expect = 0.053
Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 6/138 (4%)
Query: 63 SQRAVLLVGLCDSGKTLLFVRLLTGLYRDTQTSITDSCAVYRVNNNRGNSLTLIDLPGHE 122
++ V+++GL +GKT L +L ++ +T T V + SLTL D+ G
Sbjct: 11 AEAQVVMMGLDSAGKTTLLYKLKG--HQLVETLPTVGFNVEPLKAPGHVSLTLWDVGGQA 68
Query: 123 SLRLQFLERFKSSAGAIVFVVDSAAFQREVKDVAEFLYQVLIDSMGLKNTPSFLIACNKQ 182
LR + + + +V+V+DS R + AE L +VL D + P FL+ NKQ
Sbjct: 69 PLRASWKD-YLEGTDILVYVLDSTDEARLPESAAE-LTEVLNDP-NMAGVP-FLVLANKQ 124
Query: 183 DIAMAKSAKLIQQQLEKE 200
+ A I+ +L E
Sbjct: 125 EAPDALPLLKIRNRLSLE 142
>gi|12232463 RAB, member RAS oncogene family-like 5 isoform a [Homo
sapiens]
Length = 185
Score = 34.3 bits (77), Expect = 0.12
Identities = 38/142 (26%), Positives = 58/142 (40%), Gaps = 14/142 (9%)
Query: 67 VLLVGLCDSGKTLLFVRLLTGLYRDTQTSITDSCAV------YRVNNNRGN--SLTLIDL 118
+L VG C+SGKT+L LT T+ S T + + +NN+G L D
Sbjct: 6 ILFVGPCESGKTVL-ANFLTESSDITEYSPTQGVRILEFENPHVTSNNKGTGCEFELWDC 64
Query: 119 PGHESLRLQFLERFKSSAG-AIVFVVDSAAFQREVKDVAEFLYQVLIDSMGLKNTPSFLI 177
G + K + G IVF D + ++E+ E Y + L++T LI
Sbjct: 65 GGDAKFESCWPALMKDAHGVVIVFNADIPSHRKEM----EMWYSCFVQQPSLQDTQCMLI 120
Query: 178 ACNKQDIAMAKSAKLIQQQLEK 199
A +K K + + L K
Sbjct: 121 AHHKPGSGDDKGSLSLSPPLNK 142
>gi|31543063 glycerate kinase isoform 1 [Homo sapiens]
Length = 523
Score = 33.9 bits (76), Expect = 0.15
Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 6/103 (5%)
Query: 142 VVDSAAFQREVKDVAEFLYQVLIDSMGLKNTPSFLIACNKQDIAMAKSAKLIQ---QQLE 198
VV SAA Q +VK +A+F Y +L + TPS A ++D + + A +Q QLE
Sbjct: 331 VVLSAAMQGDVKSMAQF-YGLLAHVARTRLTPSMAGASVEEDAQLHELAAELQIPDLQLE 389
Query: 199 KELNTLRVTRSAAPSTLYSSSTAPAQLGKKGKEFEFSQLPLKV 241
+ L T+ R P L + QL G+ +L L+V
Sbjct: 390 EALETMAWGR--GPVCLLAGGEPTVQLQGSGRGGRNQELALRV 430
>gi|4502227 ADP-ribosylation factor-like 1 [Homo sapiens]
Length = 181
Score = 33.9 bits (76), Expect = 0.15
Identities = 31/131 (23%), Positives = 61/131 (46%), Gaps = 7/131 (5%)
Query: 67 VLLVGLCDSGKTLLFVRLLTGLYRDTQTSITDSCAVYRVNNNRGNSLTLIDLPGHESLRL 126
+L++GL +GKT + RL G T +I + N + + DL G S+R
Sbjct: 20 ILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLK---FQVWDLGGQTSIR- 75
Query: 127 QFLERFKSSAGAIVFVVDSAAFQREVKDVAEFLYQVLIDSMGLKNTPSFLIACNKQDIAM 186
+ + S+ A+++VVDS R+ +++ +++ L+ ++ NKQD+
Sbjct: 76 PYWRCYYSNTDAVIYVVDSC--DRDRIGISKSELVAMLEEEELRKA-ILVVFANKQDMEQ 132
Query: 187 AKSAKLIQQQL 197
A ++ + L
Sbjct: 133 AMTSSEMANSL 143
>gi|15208643 ADP-ribosylation factor domain protein 1 isoform gamma
[Homo sapiens]
Length = 546
Score = 33.1 bits (74), Expect = 0.26
Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 7/131 (5%)
Query: 67 VLLVGLCDSGKTLLFVRLLTGLYRDTQTSITDSCAVYRVNNNRGNSLTLIDLPGHESLRL 126
V+ +GL +GKT + +L + +I + N + T+ D+ G LR
Sbjct: 407 VVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLK---FTIWDVGGKHKLR- 462
Query: 127 QFLERFKSSAGAIVFVVDSAAFQREVKDVAEFLYQVLIDSMGLKNTPSFLIACNKQDIAM 186
+ + + A+VFVVDS+ R + +E L+ L++ LI NKQD+A
Sbjct: 463 PLWKHYYLNTQAVVFVVDSSHRDRISEAHSELAK--LLTEKELRDA-LLLIFANKQDVAG 519
Query: 187 AKSAKLIQQQL 197
A S + I + L
Sbjct: 520 ALSVEEITELL 530
>gi|15208641 ADP-ribosylation factor domain protein 1 isoform beta
[Homo sapiens]
Length = 569
Score = 33.1 bits (74), Expect = 0.26
Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 7/131 (5%)
Query: 67 VLLVGLCDSGKTLLFVRLLTGLYRDTQTSITDSCAVYRVNNNRGNSLTLIDLPGHESLRL 126
V+ +GL +GKT + +L + +I + N + T+ D+ G LR
Sbjct: 407 VVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLK---FTIWDVGGKHKLR- 462
Query: 127 QFLERFKSSAGAIVFVVDSAAFQREVKDVAEFLYQVLIDSMGLKNTPSFLIACNKQDIAM 186
+ + + A+VFVVDS+ R + +E L+ L++ LI NKQD+A
Sbjct: 463 PLWKHYYLNTQAVVFVVDSSHRDRISEAHSELAK--LLTEKELRDA-LLLIFANKQDVAG 519
Query: 187 AKSAKLIQQQL 197
A S + I + L
Sbjct: 520 ALSVEEITELL 530
>gi|4502197 ADP-ribosylation factor domain protein 1 isoform alpha
[Homo sapiens]
Length = 574
Score = 33.1 bits (74), Expect = 0.26
Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 7/131 (5%)
Query: 67 VLLVGLCDSGKTLLFVRLLTGLYRDTQTSITDSCAVYRVNNNRGNSLTLIDLPGHESLRL 126
V+ +GL +GKT + +L + +I + N + T+ D+ G LR
Sbjct: 407 VVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLK---FTIWDVGGKHKLR- 462
Query: 127 QFLERFKSSAGAIVFVVDSAAFQREVKDVAEFLYQVLIDSMGLKNTPSFLIACNKQDIAM 186
+ + + A+VFVVDS+ R + +E L+ L++ LI NKQD+A
Sbjct: 463 PLWKHYYLNTQAVVFVVDSSHRDRISEAHSELAK--LLTEKELRDA-LLLIFANKQDVAG 519
Query: 187 AKSAKLIQQQL 197
A S + I + L
Sbjct: 520 ALSVEEITELL 530
>gi|166064027 cyclin-dependent kinase-like 3 isoform 1 [Homo
sapiens]
Length = 592
Score = 31.6 bits (70), Expect = 0.77
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
Query: 187 AKSAKLIQQQLEKELNTLRVT--RSAAPSTLYSSSTAPAQLGKKGKEFEFSQLPLKVEFL 244
AK LI+ + + N LR ++ +TL SSS GKE E + P +++
Sbjct: 307 AKVNSLIKPKESSKENELRKDERKTVYTNTLLSSSVL-------GKEIEKEKKPKEIKVR 359
Query: 245 ECSAKGGRGDVGSADIQDLEKWLAK 269
KGGRGD+ ++ E L +
Sbjct: 360 VIKVKGGRGDISEPKKKEYEGGLGQ 384
>gi|166064025 cyclin-dependent kinase-like 3 isoform 2 [Homo
sapiens]
Length = 455
Score = 31.6 bits (70), Expect = 0.77
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
Query: 187 AKSAKLIQQQLEKELNTLRVT--RSAAPSTLYSSSTAPAQLGKKGKEFEFSQLPLKVEFL 244
AK LI+ + + N LR ++ +TL SSS GKE E + P +++
Sbjct: 307 AKVNSLIKPKESSKENELRKDERKTVYTNTLLSSSVL-------GKEIEKEKKPKEIKVR 359
Query: 245 ECSAKGGRGDVGSADIQDLEKWLAK 269
KGGRGD+ ++ E L +
Sbjct: 360 VIKVKGGRGDISEPKKKEYEGGLGQ 384
>gi|53729339 mitochondrial translational initiation factor 2
precursor [Homo sapiens]
Length = 727
Score = 30.0 bits (66), Expect = 2.2
Identities = 33/137 (24%), Positives = 56/137 (40%), Gaps = 20/137 (14%)
Query: 67 VLLVGLCDSGKTLLFVRLLTGLYRDTQTS------ITDSCAVYRVNNNRGNSLTLIDLPG 120
V ++G D GKT L + +R TQ + IT + V+ G +T +D PG
Sbjct: 183 VTIMGHVDHGKTTLLDK-----FRKTQVAAVETGGITQHIGAFLVSLPSGEKITFLDTPG 237
Query: 121 HESLRLQFLERFKSSAGAIVFVVDSAAFQREVKDVAEFLYQVLIDSMGLKNTPSFLIACN 180
H + R + + + V+ AA +K E + + + ++A N
Sbjct: 238 HAAFSAM---RARGAQVTDIVVLVVAADDGVMKQTVESIQHAKDAQVPI------ILAVN 288
Query: 181 KQDIAMAKSAKLIQQQL 197
K D A A K+ ++ L
Sbjct: 289 KCDKAEADPEKVKKELL 305
>gi|53729337 mitochondrial translational initiation factor 2
precursor [Homo sapiens]
Length = 727
Score = 30.0 bits (66), Expect = 2.2
Identities = 33/137 (24%), Positives = 56/137 (40%), Gaps = 20/137 (14%)
Query: 67 VLLVGLCDSGKTLLFVRLLTGLYRDTQTS------ITDSCAVYRVNNNRGNSLTLIDLPG 120
V ++G D GKT L + +R TQ + IT + V+ G +T +D PG
Sbjct: 183 VTIMGHVDHGKTTLLDK-----FRKTQVAAVETGGITQHIGAFLVSLPSGEKITFLDTPG 237
Query: 121 HESLRLQFLERFKSSAGAIVFVVDSAAFQREVKDVAEFLYQVLIDSMGLKNTPSFLIACN 180
H + R + + + V+ AA +K E + + + ++A N
Sbjct: 238 HAAFSAM---RARGAQVTDIVVLVVAADDGVMKQTVESIQHAKDAQVPI------ILAVN 288
Query: 181 KQDIAMAKSAKLIQQQL 197
K D A A K+ ++ L
Sbjct: 289 KCDKAEADPEKVKKELL 305
>gi|21553323 DIRAS family, GTP-binding RAS-like 1 [Homo sapiens]
Length = 198
Score = 30.0 bits (66), Expect = 2.2
Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 2/104 (1%)
Query: 61 RSSQRAVLLVGLCDSGKTLLFVRLLTGLYRDTQ-TSITDSCAVYRVNNNRGNSLTLIDLP 119
+S+ V++ G GK+ L +R + G +RDT +I D+ + +L + D
Sbjct: 4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTT 63
Query: 120 G-HESLRLQFLERFKSSAGAIVFVVDSAAFQREVKDVAEFLYQV 162
G H+ +Q L K A +VF V S E+ + + + Q+
Sbjct: 64 GSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQI 107
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.133 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,884,442
Number of Sequences: 37866
Number of extensions: 335436
Number of successful extensions: 1105
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 1098
Number of HSP's gapped (non-prelim): 42
length of query: 271
length of database: 18,247,518
effective HSP length: 101
effective length of query: 170
effective length of database: 14,423,052
effective search space: 2451918840
effective search space used: 2451918840
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.