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Search of human proteins with 148922963
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|148922963 F-box and leucine-rich repeat protein 21 [Homo
sapiens]
(434 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|148922963 F-box and leucine-rich repeat protein 21 [Homo sapi... 874 0.0
gi|16306584 F-box and leucine-rich repeat protein 3 [Homo sapiens] 632 0.0
gi|42558258 F-box protein 33 [Homo sapiens] 50 4e-06
gi|16306595 S-phase kinase-associated protein 2 isoform 1 [Homo ... 49 7e-06
gi|14249170 S-phase kinase-associated protein 2 isoform 2 [Homo ... 49 9e-06
gi|8923179 F-box and leucine-rich repeat protein 12 [Homo sapiens] 43 6e-04
gi|23397500 F-box protein 39 [Homo sapiens] 42 0.001
gi|161333854 F-box and leucine-rich repeat protein 13 isoform 2 ... 41 0.002
gi|161333852 F-box and leucine-rich repeat protein 13 isoform 1 ... 41 0.002
gi|30089926 F-box only protein 11 isoform 1 [Homo sapiens] 39 0.012
gi|30089924 F-box only protein 11 isoform 2 [Homo sapiens] 39 0.012
gi|30089922 F-box only protein 11 isoform 3 [Homo sapiens] 39 0.012
gi|22547146 F-box and leucine-rich repeat protein 8 [Homo sapiens] 37 0.027
gi|22748931 F-box and leucine-rich repeat protein 14 [Homo sapiens] 37 0.046
gi|6912466 F-box and leucine-rich repeat protein 7 [Homo sapiens] 36 0.078
gi|27734755 F-box and leucine-rich repeat protein 20 [Homo sapiens] 35 0.17
gi|16306582 F-box and leucine-rich repeat protein 2 [Homo sapiens] 35 0.17
gi|62865871 coiled-coil domain containing 132 isoform a [Homo sa... 35 0.17
gi|83035136 F-box protein 31 [Homo sapiens] 33 0.66
gi|24308129 F-box and WD repeat domain containing 5 [Homo sapiens] 33 0.66
gi|24025682 F-box and leucine-rich repeat protein 16 [Homo sapiens] 33 0.66
gi|28827813 NLR family, pyrin domain containing 14 [Homo sapiens] 32 1.1
gi|67003566 F-box protein 48 [Homo sapiens] 32 1.5
gi|157743247 F-box protein 45 [Homo sapiens] 32 1.5
gi|51873034 F-box and leucine-rich repeat protein 9 [Homo sapiens] 31 1.9
gi|16306591 F-box and leucine-rich repeat protein 9 [Homo sapiens] 31 1.9
gi|74048554 cancer susceptibility candidate 5 isoform 2 [Homo sa... 30 3.3
gi|74048514 cancer susceptibility candidate 5 isoform 1 [Homo sa... 30 3.3
gi|61966701 dorsal neural-tube nuclear protein [Homo sapiens] 30 3.3
gi|157168349 F-box and leucine-rich repeat protein 19 [Homo sapi... 30 4.3
>gi|148922963 F-box and leucine-rich repeat protein 21 [Homo
sapiens]
Length = 434
Score = 874 bits (2257), Expect = 0.0
Identities = 434/434 (100%), Positives = 434/434 (100%)
Query: 1 MKRNSLSVENKIVQLSGAAKQPKVGFYSSLNQTHTHTVLLDWGSLPHHVVLQIFQYLPLL 60
MKRNSLSVENKIVQLSGAAKQPKVGFYSSLNQTHTHTVLLDWGSLPHHVVLQIFQYLPLL
Sbjct: 1 MKRNSLSVENKIVQLSGAAKQPKVGFYSSLNQTHTHTVLLDWGSLPHHVVLQIFQYLPLL 60
Query: 61 DRACASSVCRRWNEVFHISDLWRKFEFELNQSATSSFKSTHPDLIQQIIKKHFAHLQYVS 120
DRACASSVCRRWNEVFHISDLWRKFEFELNQSATSSFKSTHPDLIQQIIKKHFAHLQYVS
Sbjct: 61 DRACASSVCRRWNEVFHISDLWRKFEFELNQSATSSFKSTHPDLIQQIIKKHFAHLQYVS 120
Query: 121 FKVDSSAESAEAACDILSQLVNCSIQTLGLISTAKPSFMNVSESHFVSALTVVFINSKSL 180
FKVDSSAESAEAACDILSQLVNCSIQTLGLISTAKPSFMNVSESHFVSALTVVFINSKSL
Sbjct: 121 FKVDSSAESAEAACDILSQLVNCSIQTLGLISTAKPSFMNVSESHFVSALTVVFINSKSL 180
Query: 181 SSIKIEDTPVDDPSLKILVANNSDTLRLPKMSSCPHVSSDGILCVADRCQGLRELALNYY 240
SSIKIEDTPVDDPSLKILVANNSDTLRLPKMSSCPHVSSDGILCVADRCQGLRELALNYY
Sbjct: 181 SSIKIEDTPVDDPSLKILVANNSDTLRLPKMSSCPHVSSDGILCVADRCQGLRELALNYY 240
Query: 241 ILTDELFLALSSETHVNLEHLRIDVVSENPGQIKFHAVKKHSWDALIKHSPRVNVVMHFF 300
ILTDELFLALSSETHVNLEHLRIDVVSENPGQIKFHAVKKHSWDALIKHSPRVNVVMHFF
Sbjct: 241 ILTDELFLALSSETHVNLEHLRIDVVSENPGQIKFHAVKKHSWDALIKHSPRVNVVMHFF 300
Query: 301 LYEEEFETFFKEETPVTHLYFGRSVSKVVLGRVGLNCPRLIELVVCANDLQPLDNELICI 360
LYEEEFETFFKEETPVTHLYFGRSVSKVVLGRVGLNCPRLIELVVCANDLQPLDNELICI
Sbjct: 301 LYEEEFETFFKEETPVTHLYFGRSVSKVVLGRVGLNCPRLIELVVCANDLQPLDNELICI 360
Query: 361 AEHCTNLTALGLSKCEVSCSAFIRFVRLCERRLTQLSVMEEVLIPDEDYSLDEIHTEVSK 420
AEHCTNLTALGLSKCEVSCSAFIRFVRLCERRLTQLSVMEEVLIPDEDYSLDEIHTEVSK
Sbjct: 361 AEHCTNLTALGLSKCEVSCSAFIRFVRLCERRLTQLSVMEEVLIPDEDYSLDEIHTEVSK 420
Query: 421 YLGRVWFPDVMPLW 434
YLGRVWFPDVMPLW
Sbjct: 421 YLGRVWFPDVMPLW 434
>gi|16306584 F-box and leucine-rich repeat protein 3 [Homo sapiens]
Length = 428
Score = 632 bits (1630), Expect = 0.0
Identities = 307/434 (70%), Positives = 362/434 (83%), Gaps = 6/434 (1%)
Query: 1 MKRNSLSVENKIVQLSGAAKQPKVGFYSSLNQTHTHTVLLDWGSLPHHVVLQIFQYLPLL 60
MKR + + A K K L T+ H+ DWG+L ++LQ+F+YLPLL
Sbjct: 1 MKRGGRDSDRNSSEEGTAEKSKK------LRTTNEHSQTCDWGNLLQDIILQVFKYLPLL 54
Query: 61 DRACASSVCRRWNEVFHISDLWRKFEFELNQSATSSFKSTHPDLIQQIIKKHFAHLQYVS 120
DRA AS VCR WN+VFH+ DLWR FEFELNQ ATS K+THP+LI+QIIK+H HLQYVS
Sbjct: 55 DRAHASQVCRNWNQVFHMPDLWRCFEFELNQPATSYLKATHPELIKQIIKRHSNHLQYVS 114
Query: 121 FKVDSSAESAEAACDILSQLVNCSIQTLGLISTAKPSFMNVSESHFVSALTVVFINSKSL 180
FKVDSS ESAEAACDILSQLVNCS++TLGLISTA+PSFM++ +SHF+SALTVVF+NSKSL
Sbjct: 115 FKVDSSKESAEAACDILSQLVNCSLKTLGLISTARPSFMDLPKSHFISALTVVFVNSKSL 174
Query: 181 SSIKIEDTPVDDPSLKILVANNSDTLRLPKMSSCPHVSSDGILCVADRCQGLRELALNYY 240
SS+KI+DTPVDDPSLK+LVANNSDTL+L KMSSCPHVS GILCVAD+C GLRELALNY+
Sbjct: 175 SSLKIDDTPVDDPSLKVLVANNSDTLKLLKMSSCPHVSPAGILCVADQCHGLRELALNYH 234
Query: 241 ILTDELFLALSSETHVNLEHLRIDVVSENPGQIKFHAVKKHSWDALIKHSPRVNVVMHFF 300
+L+DEL LALSSE HV LEHLRIDVVSENPGQ FH ++K SWDA I+HSP+VN+VM+FF
Sbjct: 235 LLSDELLLALSSEKHVRLEHLRIDVVSENPGQTHFHTIQKSSWDAFIRHSPKVNLVMYFF 294
Query: 301 LYEEEFETFFKEETPVTHLYFGRSVSKVVLGRVGLNCPRLIELVVCANDLQPLDNELICI 360
LYEEEF+ FF+ E P THLYFGRSVSK VLGRVG+ CPRL+ELVVCAN L+PLD ELI I
Sbjct: 295 LYEEEFDPFFRYEIPATHLYFGRSVSKDVLGRVGMTCPRLVELVVCANGLRPLDEELIRI 354
Query: 361 AEHCTNLTALGLSKCEVSCSAFIRFVRLCERRLTQLSVMEEVLIPDEDYSLDEIHTEVSK 420
AE C NL+A+GL +CEVSCSAF+ FV++C RL+QLS+MEEVLIPD+ YSL++IH EVSK
Sbjct: 355 AERCKNLSAIGLGECEVSCSAFVEFVKMCGGRLSQLSIMEEVLIPDQKYSLEQIHWEVSK 414
Query: 421 YLGRVWFPDVMPLW 434
+LGRVWFPD+MP W
Sbjct: 415 HLGRVWFPDMMPTW 428
>gi|42558258 F-box protein 33 [Homo sapiens]
Length = 555
Score = 50.1 bits (118), Expect = 4e-06
Identities = 66/263 (25%), Positives = 105/263 (39%), Gaps = 26/263 (9%)
Query: 188 TPVDDPSLKILVANNSDTLRLPKMSSCPHVSSDGILCVADRCQGLRELALNYYILTDELF 247
TP SL VAN + L L ++ P S+ +R L LAL++ T E+
Sbjct: 265 TPTSLSSLSNAVANTMEHLSLLD-NNIPGNSTLITAVELERFVNLHSLALDFCDFTAEMA 323
Query: 248 LALSSETHVNLEHLRIDV--VSENPGQIKFHAVKKHSWDALIKHSPRVNV-VMHFFLYEE 304
L+ HV L+ L + V VS + +H W AL + S V +M F + E
Sbjct: 324 RVLTDSNHVPLQRLSLLVHNVSVMHKSLDNMPNDEH-WKALSRKSTSFRVYIMAFDIKSE 382
Query: 305 EFETFFKEETPVTHLYFG---RSVSKVVLGRVGLNCPRLIELVVCANDL----------- 350
+ K P+ ++F VS ++ + + + + ND+
Sbjct: 383 DMLKILKPSIPLERIHFDSYITCVSGAIVDLISRQYDKFLTHFILMNDVIDTSGFPDLSD 442
Query: 351 QPLDNELICIAEHCTNLTALGLSKCEVSCSAFIRFVRLCERRLTQLSVMEEVLIPDE--- 407
++ L+ +A CT L+ L + V I RL L L V EE + D+
Sbjct: 443 NRNEDPLVLLAWRCTKLSLLAIHGYTVWAHNLIAIARLRGSDLKVLEVTEESIDFDQGEL 502
Query: 408 -DYSLDEIHT---EVSKYLGRVW 426
D +D +H +VS LG+ W
Sbjct: 503 ADQDVDPVHNLIEQVSLGLGQPW 525
Score = 38.1 bits (87), Expect = 0.016
Identities = 18/49 (36%), Positives = 24/49 (48%)
Query: 44 SLPHHVVLQIFQYLPLLDRACASSVCRRWNEVFHISDLWRKFEFELNQS 92
SLP +++ IF +LP DR AS+ C W E LW + L S
Sbjct: 70 SLPSELIVHIFSFLPAPDRLRASASCSHWRECLFYPALWPQLRICLRVS 118
>gi|16306595 S-phase kinase-associated protein 2 isoform 1 [Homo
sapiens]
Length = 424
Score = 49.3 bits (116), Expect = 7e-06
Identities = 68/340 (20%), Positives = 133/340 (39%), Gaps = 47/340 (13%)
Query: 40 LDWGSLPHHVVLQIFQYLPLLDRACASSVCRRWNEVFHISDLWRKFEFELNQSATSSFKS 99
+ W SLP ++L IF L L + S VC+RW + LW Q+ + K+
Sbjct: 95 VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLW--------QTLDLTGKN 146
Query: 100 THPDLIQQIIKKHFAHLQYVSFKVDSSAESAEAACDILSQLVNCSIQTLGLISTAKPSFM 159
HPD+ +++ + ++F+ S A S + M
Sbjct: 147 LHPDVTGRLLSQ-----GVIAFRCPRSFMDQPLA---------------EHFSPFRVQHM 186
Query: 160 NVSESHF-VSALTVVFINSKSLSSIKIEDTPVDDPSLKILVANNSDTLRLPKMSSCPHVS 218
++S S VS L + L ++ +E + DP + L A NS+ +RL +S C S
Sbjct: 187 DLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTL-AKNSNLVRL-NLSGCSGFS 244
Query: 219 SDGILCVADRCQGLRELALNY-YILTDELFLALSSETHVNLEHLRIDVVSENPGQIKFHA 277
+ + C L EL L++ + T++ + + L + +N
Sbjct: 245 EFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKN-------- 296
Query: 278 VKKHSWDALIKHSPRV-------NVVMHFFLYEEEFETFFKEETPVTHLYFGRSVSKVVL 330
++K L++ P + +V++ ++E F+ + + ++ Y + + L
Sbjct: 297 LQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLEL 356
Query: 331 GRVGLNCPRLIELVVCANDLQPLDNELICIAEHCTNLTAL 370
G + + +V LQ L L + +C++ T +
Sbjct: 357 GEIPTLKTLQVFGIVPDGTLQLLKEALPHLQINCSHFTTI 396
>gi|14249170 S-phase kinase-associated protein 2 isoform 2 [Homo
sapiens]
Length = 410
Score = 48.9 bits (115), Expect = 9e-06
Identities = 49/201 (24%), Positives = 82/201 (40%), Gaps = 31/201 (15%)
Query: 40 LDWGSLPHHVVLQIFQYLPLLDRACASSVCRRWNEVFHISDLWRKFEFELNQSATSSFKS 99
+ W SLP ++L IF L L + S VC+RW + LW Q+ + K+
Sbjct: 95 VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLW--------QTLDLTGKN 146
Query: 100 THPDLIQQIIKKHFAHLQYVSFKVDSSAESAEAACDILSQLVNCSIQTLGLISTAKPSFM 159
HPD+ +++ + ++F+ S A S + M
Sbjct: 147 LHPDVTGRLLSQ-----GVIAFRCPRSFMDQPLA---------------EHFSPFRVQHM 186
Query: 160 NVSESHF-VSALTVVFINSKSLSSIKIEDTPVDDPSLKILVANNSDTLRLPKMSSCPHVS 218
++S S VS L + L ++ +E + DP + L A NS+ +RL +S C S
Sbjct: 187 DLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTL-AKNSNLVRL-NLSGCSGFS 244
Query: 219 SDGILCVADRCQGLRELALNY 239
+ + C L EL L++
Sbjct: 245 EFALQTLLSSCSRLDELNLSW 265
>gi|8923179 F-box and leucine-rich repeat protein 12 [Homo
sapiens]
Length = 326
Score = 42.7 bits (99), Expect = 6e-04
Identities = 20/45 (44%), Positives = 25/45 (55%)
Query: 45 LPHHVVLQIFQYLPLLDRACASSVCRRWNEVFHISDLWRKFEFEL 89
LP V+L+IF YLP+ DR S VC RW + LWR + L
Sbjct: 7 LPDSVLLEIFSYLPVRDRIRISRVCHRWKRLVDDRWLWRHVDLTL 51
>gi|23397500 F-box protein 39 [Homo sapiens]
Length = 442
Score = 41.6 bits (96), Expect = 0.001
Identities = 16/42 (38%), Positives = 28/42 (66%)
Query: 42 WGSLPHHVVLQIFQYLPLLDRACASSVCRRWNEVFHISDLWR 83
W LP + ++F +L DR+ A+ VCR+WN++ + ++LWR
Sbjct: 16 WAFLPDLCLCRVFWWLGDRDRSRAALVCRKWNQMMYSAELWR 57
>gi|161333854 F-box and leucine-rich repeat protein 13 isoform 2
[Homo sapiens]
Length = 690
Score = 41.2 bits (95), Expect = 0.002
Identities = 85/380 (22%), Positives = 156/380 (41%), Gaps = 53/380 (13%)
Query: 37 TVLLDWGSLPHHVVLQIFQYLPLLDRACASSVCRRWNEVFHISDLWRKFEFELNQSATSS 96
T+ D LP +LQIF YL L D V W + ++ LW +F SS
Sbjct: 150 TLKCDISLLPERAILQIFFYLSLKDVIICGQVNHAWMLMTQLNSLWNAIDF-------SS 202
Query: 97 FKSTHPD-LIQQIIKKHFAHLQYVSFK---VDSSAESAEAACDILSQL--VNC---SIQT 147
K+ PD I +++ ++ ++F+ + + + C L +L +C + ++
Sbjct: 203 VKNVIPDKYIVSTLQRWRLNVLRLNFRGCLLRPKTFRSVSHCRNLQELNVSDCPTFTDES 262
Query: 148 LGLISTAKPSF--MNVSESHFVS----ALTVVFINSKSLSSIKIEDTPVDDPSLKIL-VA 200
+ IS P +N+S + + L F N ++LS D L+ L +
Sbjct: 263 MRHISEGCPGVLCLNLSNTTITNRTMRLLPRHFHNLQNLSLAYCR--RFTDKGLQYLNLG 320
Query: 201 NNSDTLRLPKMSSCPHVSSDGILCVADRCQGLRELALN-YYILTDELFLALSSETH--VN 257
N L +S C +S G +A+ C G+ L +N LTD AL + +
Sbjct: 321 NGCHKLIYLDLSGCTQISVQGFRYIANSCTGIMHLTINDMPTLTDNCVKALVEKCSRITS 380
Query: 258 LEHLRIDVVSE---------NPGQIKFHAVKK---HSWDALIKHSPRVNVVMHFFLYEEE 305
L +S+ +I+F K+ S+ + K+ P ++ H ++ + +
Sbjct: 381 LVFTGAPHISDCTFRALSACKLRKIRFEGNKRVTDASFKFIDKNYPNLS---HIYMADCK 437
Query: 306 --FETFFKEETPVTHLYFGRSVSKVVLGRVGLN-------CPRLIELVVCANDLQPLDNE 356
++ + +P+ L + V +G +GL R+ EL + +N ++ D
Sbjct: 438 GITDSSLRSLSPLKQLTVLNLANCVRIGDMGLKQFLDGPASMRIRELNL-SNCVRLSDAS 496
Query: 357 LICIAEHCTNLTALGLSKCE 376
++ ++E C NL L L CE
Sbjct: 497 VMKLSERCPNLNYLSLRNCE 516
>gi|161333852 F-box and leucine-rich repeat protein 13 isoform 1
[Homo sapiens]
Length = 735
Score = 41.2 bits (95), Expect = 0.002
Identities = 85/380 (22%), Positives = 156/380 (41%), Gaps = 53/380 (13%)
Query: 37 TVLLDWGSLPHHVVLQIFQYLPLLDRACASSVCRRWNEVFHISDLWRKFEFELNQSATSS 96
T+ D LP +LQIF YL L D V W + ++ LW +F SS
Sbjct: 150 TLKCDISLLPERAILQIFFYLSLKDVIICGQVNHAWMLMTQLNSLWNAIDF-------SS 202
Query: 97 FKSTHPD-LIQQIIKKHFAHLQYVSFK---VDSSAESAEAACDILSQL--VNC---SIQT 147
K+ PD I +++ ++ ++F+ + + + C L +L +C + ++
Sbjct: 203 VKNVIPDKYIVSTLQRWRLNVLRLNFRGCLLRPKTFRSVSHCRNLQELNVSDCPTFTDES 262
Query: 148 LGLISTAKPSF--MNVSESHFVS----ALTVVFINSKSLSSIKIEDTPVDDPSLKIL-VA 200
+ IS P +N+S + + L F N ++LS D L+ L +
Sbjct: 263 MRHISEGCPGVLCLNLSNTTITNRTMRLLPRHFHNLQNLSLAYCR--RFTDKGLQYLNLG 320
Query: 201 NNSDTLRLPKMSSCPHVSSDGILCVADRCQGLRELALN-YYILTDELFLALSSETH--VN 257
N L +S C +S G +A+ C G+ L +N LTD AL + +
Sbjct: 321 NGCHKLIYLDLSGCTQISVQGFRYIANSCTGIMHLTINDMPTLTDNCVKALVEKCSRITS 380
Query: 258 LEHLRIDVVSE---------NPGQIKFHAVKK---HSWDALIKHSPRVNVVMHFFLYEEE 305
L +S+ +I+F K+ S+ + K+ P ++ H ++ + +
Sbjct: 381 LVFTGAPHISDCTFRALSACKLRKIRFEGNKRVTDASFKFIDKNYPNLS---HIYMADCK 437
Query: 306 --FETFFKEETPVTHLYFGRSVSKVVLGRVGLN-------CPRLIELVVCANDLQPLDNE 356
++ + +P+ L + V +G +GL R+ EL + +N ++ D
Sbjct: 438 GITDSSLRSLSPLKQLTVLNLANCVRIGDMGLKQFLDGPASMRIRELNL-SNCVRLSDAS 496
Query: 357 LICIAEHCTNLTALGLSKCE 376
++ ++E C NL L L CE
Sbjct: 497 VMKLSERCPNLNYLSLRNCE 516
>gi|30089926 F-box only protein 11 isoform 1 [Homo sapiens]
Length = 843
Score = 38.5 bits (88), Expect = 0.012
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 45 LPHHVVLQIFQYLPLLDRACASSVCRRWNEVFHISDLWRKFEFELNQSATSSFKSTHPDL 104
LP VVL+IF YL D A+ VC+R++E+ + LW++ E+ + T P
Sbjct: 75 LPDEVVLKIFSYLLEQDLCRAACVCKRFSELANDPILWKRLYMEVFE-YTRPMMHPEPGK 133
Query: 105 IQQIIKKHFAH 115
QI + + H
Sbjct: 134 FYQINPEEYEH 144
>gi|30089924 F-box only protein 11 isoform 2 [Homo sapiens]
Length = 686
Score = 38.5 bits (88), Expect = 0.012
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 45 LPHHVVLQIFQYLPLLDRACASSVCRRWNEVFHISDLWRKFEFELNQSATSSFKSTHPDL 104
LP VVL+IF YL D A+ VC+R++E+ + LW++ E+ + T P
Sbjct: 75 LPDEVVLKIFSYLLEQDLCRAACVCKRFSELANDPILWKRLYMEVFE-YTRPMMHPEPGK 133
Query: 105 IQQIIKKHFAH 115
QI + + H
Sbjct: 134 FYQINPEEYEH 144
>gi|30089922 F-box only protein 11 isoform 3 [Homo sapiens]
Length = 585
Score = 38.5 bits (88), Expect = 0.012
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 45 LPHHVVLQIFQYLPLLDRACASSVCRRWNEVFHISDLWRKFEFELNQSATSSFKSTHPDL 104
LP VVL+IF YL D A+ VC+R++E+ + LW++ E+ + T P
Sbjct: 75 LPDEVVLKIFSYLLEQDLCRAACVCKRFSELANDPILWKRLYMEVFE-YTRPMMHPEPGK 133
Query: 105 IQQIIKKHFAH 115
QI + + H
Sbjct: 134 FYQINPEEYEH 144
>gi|22547146 F-box and leucine-rich repeat protein 8 [Homo sapiens]
Length = 374
Score = 37.4 bits (85), Expect = 0.027
Identities = 85/372 (22%), Positives = 128/372 (34%), Gaps = 45/372 (12%)
Query: 45 LPHHVVLQIFQYLPLLDRACASSVCRRWNEVFHISDLWRKFEFELNQSATSSFKSTHPDL 104
LP V+ IF++L L DRA A+ VCR W S +W + S + P
Sbjct: 8 LPEEVLALIFRHLSLRDRAAAARVCRAWAAAATCSAVWH----DTKISCECELEGMLPPY 63
Query: 105 IQQIIKKHFAHLQYVSFKVDSSAE-SAEAACDILSQLVNCSIQTLGL---ISTAKPSFMN 160
+ + H+ + + + S + S AA ++L L + GL KP F
Sbjct: 64 LSACLD----HIHNLRLEFEPSRKPSRRAAIELLMVLAGRAPGLRGLRLECRGEKPLFDA 119
Query: 161 VSESHFVSALTVVFINSKSLSSIKIEDTPVDDPSLKILVANNSDTLRLPKMSSCPHVSS- 219
+ L V + S ++ D L+ L D L L SCP + S
Sbjct: 120 GRD-----VLEAVHAVCGAASQLRHLD-------LRRLSFTLDDALVLQAARSCPELHSL 167
Query: 220 -------------DGILCVADRCQGLRELALNYYILTDELFLALSSETHVNLEHLRIDVV 266
+L + + C LR L L+ L+ + AL++ L +
Sbjct: 168 FLDNSTLVGSVGPGSVLELLEACPRLRALGLHLASLSHAILEALAAPDRAPFALLALRCA 227
Query: 267 SENPGQIKFHAVKKHSWDALIKHSPRVNVVMHF--FLYEEEFETFFKEETPVTHLYFGRS 324
P + + +W AL + P + V + L E + PV L S
Sbjct: 228 C--PEDARASPLPNEAWVALRRRHPGLAVELELEPALPAESVTRVLQPAVPVAALRLNLS 285
Query: 325 VSKVVLGRVGLN--CPRLIELVVCANDLQPLDNELICIAEHCTNLTALGLSKCEVSCSAF 382
V R + L L V A L+ L +A C L + C VS S
Sbjct: 286 GDTVGPVRFAAHHYAATLCALEVRAAASAELNAALEELAARCAALREVHCF-CVVSHSVL 344
Query: 383 IRFVRLCERRLT 394
F C R T
Sbjct: 345 DAFRAHCPRLRT 356
>gi|22748931 F-box and leucine-rich repeat protein 14 [Homo sapiens]
Length = 418
Score = 36.6 bits (83), Expect = 0.046
Identities = 44/204 (21%), Positives = 81/204 (39%), Gaps = 21/204 (10%)
Query: 49 VVLQIFQYLPLLDRACASSVCRRWNEVFHISDLWRKFEFELNQSATSSFKSTHPDLIQQI 108
++ IF YL + D+ A+ VC W + + +WR E +L+ + +P L +
Sbjct: 12 LLAMIFGYLDVRDKGRAAQVCTAWRDAAYHKSVWRGVEAKLH------LRRANPSLFPSL 65
Query: 109 IKKHFAHLQYVSFKVDSS---AESAEAACDILSQLVNCSIQTLGL-----ISTAKPSFMN 160
+ +Q +S + S A LS N + LG I + + ++
Sbjct: 66 QARGIRRVQILSLRRSLSYVIQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLS 125
Query: 161 VSESHFVSALTVVFINSKSLSSIKIEDTPVDDPSLKILVANNSDTLRLPKMSSCPHVSSD 220
+ + S+L + K L +++ + +L+A L+ + SC H+S
Sbjct: 126 LCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDV 185
Query: 221 GI-------LCVADRCQGLRELAL 237
GI A+ C GL +L L
Sbjct: 186 GIGHLAGMTRSAAEGCLGLEQLTL 209
>gi|6912466 F-box and leucine-rich repeat protein 7 [Homo sapiens]
Length = 491
Score = 35.8 bits (81), Expect = 0.078
Identities = 16/39 (41%), Positives = 21/39 (53%)
Query: 45 LPHHVVLQIFQYLPLLDRACASSVCRRWNEVFHISDLWR 83
LP H ++QIF +LP + VCRRW + LWR
Sbjct: 117 LPDHSMVQIFSFLPTNQLCRCARVCRRWYNLAWDPRLWR 155
Score = 35.8 bits (81), Expect = 0.078
Identities = 47/197 (23%), Positives = 75/197 (38%), Gaps = 41/197 (20%)
Query: 211 MSSCPHVSSDGILCVADRCQGLRELALN--YYILTDELFLALSSETHVNLEHLRIDVVSE 268
+S C ++ G+ +A C LR L ++ Y I + +F +S NLEHL + S+
Sbjct: 193 VSGCRRLTDRGLYTIAQCCPELRRLEVSGCYNISNEAVFDVVS--LCPNLEHLDVSGCSK 250
Query: 269 -------NPGQIKFHAVKKHSWDALIKHSPRVNVVMHFFLYEEEFETFFKEETPVTHLYF 321
IK + H I++ +++ F L +E T T +THLY
Sbjct: 251 VTCISLTREASIKLSPL--HGKQISIRY---LDMTDCFVLEDEGLHTIAAHCTQLTHLYL 305
Query: 322 GRSVSKVVLGRVGLNCPRLIELVVCANDLQPLDNELICIAEHCTNLTALGLSKCEVSCSA 381
R C RL D L + +C ++ L +S C
Sbjct: 306 RR-------------CVRLT------------DEGLRYLVIYCASIKELSVSDCRFVSDF 340
Query: 382 FIRFVRLCERRLTQLSV 398
+R + E RL LS+
Sbjct: 341 GLREIAKLESRLRYLSI 357
Score = 32.7 bits (73), Expect = 0.66
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
Query: 199 VANNSDTLRLPKMSSCPHVSSDGILCVADRCQGLRELALNYYILTDELFLALSSETHVNL 258
+A N L+ + CP VS G+ C+A C L+ L+L L + + +L
Sbjct: 397 LAKNCTKLKSLDIGKCPLVSDTGLECLALNCFNLKRLSLKSCESITGQGLQIVAANCFDL 456
Query: 259 EHLRIDVVSENPGQIKFHAVKKHSWDALIKHS 290
+ L + + ++F VK+H +I+H+
Sbjct: 457 QTLNVQDCEVSVEALRF--VKRHCKRCVIEHT 486
Score = 29.3 bits (64), Expect = 7.3
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 354 DNELICIAEHCTNLTALGLSKCEVSCSAFIRFVRLCERRLTQLSVMEEVLIPDEDYSLDE 413
D L IA HCT LT L L +C +R++ + + +LSV + + D+ L E
Sbjct: 287 DEGLHTIAAHCTQLTHLYLRRCVRLTDEGLRYLVIYCASIKELSVSDCRFV--SDFGLRE 344
Query: 414 I 414
I
Sbjct: 345 I 345
>gi|27734755 F-box and leucine-rich repeat protein 20 [Homo sapiens]
Length = 436
Score = 34.7 bits (78), Expect = 0.17
Identities = 85/380 (22%), Positives = 145/380 (38%), Gaps = 71/380 (18%)
Query: 45 LPHHVVLQIFQYLPLLDRACASSVCRRWNEVFHISDLWRK---FEFELNQSATSSFKSTH 101
LP ++L+IF +L ++ + V R WN + W++ F+F+ +
Sbjct: 28 LPKELLLRIFSFLDVVTLCRCAQVSRAWNVLALDGSNWQRIDLFDFQ---------RDIE 78
Query: 102 PDLIQQIIKKHFAHLQYVSFKVDSSAESAEAACDILSQLVNC-SIQTLGLISTAKPSFMN 160
+++ I K+ L+ +S + + A +Q NC +I+ L L K +
Sbjct: 79 GRVVENISKRCGGFLRKLSLR--GCLGVGDNALRTFAQ--NCRNIEVLNLNGCTKTTDAT 134
Query: 161 -VSESHFVSALTVVFINSKSLSSIKIEDTPVDDPSLKILVANNSDTLRLPKMSSCPHVSS 219
S S F S L + + S T + + SLK L + L +S C V+
Sbjct: 135 CTSLSKFCSKLRHLDLAS---------CTSITNMSLKAL-SEGCPLLEQLNISWCDQVTK 184
Query: 220 DGILCVADRCQGLREL-----------ALNYYILTDELFLALSSETHVNLEHLRIDVVSE 268
DGI + C GL+ L AL Y + L+ +T + + + +
Sbjct: 185 DGIQALVRGCGGLKALFLKGCTQLEDEALKYIGAHCPELVTLNLQTCLQITDEGLITICR 244
Query: 269 NPGQIKFHAVKKHS------WDALIKHSPRVNVVMHFFLYEEEFETFFKEETPVTHLYFG 322
+++ S +AL ++ PR+ ++ E + L
Sbjct: 245 GCHKLQSLCASGCSNITDAILNALGQNCPRLRIL---------------EVARCSQL--- 286
Query: 323 RSVSKVVLGRVGLNCPRL--IELVVCANDLQPLDNELICIAEHCTNLTALGLSKCEVSCS 380
V L R NC L ++L C +Q D+ LI ++ HC L L LS CE+
Sbjct: 287 TDVGFTTLAR---NCHELEKMDLEEC---VQITDSTLIQLSIHCPRLQVLSLSHCELITD 340
Query: 381 AFIRFVRLCERRLTQLSVME 400
IR + QL V+E
Sbjct: 341 DGIRHLGNGACAHDQLEVIE 360
>gi|16306582 F-box and leucine-rich repeat protein 2 [Homo sapiens]
Length = 423
Score = 34.7 bits (78), Expect = 0.17
Identities = 76/368 (20%), Positives = 131/368 (35%), Gaps = 93/368 (25%)
Query: 45 LPHHVVLQIFQYLPLLDRACASSVCRRWNEVFHISDLWRK---FEFELNQSATSSFKSTH 101
LP ++L+IF +L ++ + + + WN + W++ F F+++
Sbjct: 15 LPKELLLRIFSFLDIVTLCRCAQISKAWNILALDGSNWQRIDLFNFQIDVEGR------- 67
Query: 102 PDLIQQIIKKHFAHLQYVSFK-----VDSSAESAEAACDILSQLVNCSIQTLGLISTAKP 156
+++ I K+ L+ +S + DSS ++ C + L N + T ST
Sbjct: 68 --VVENISKRCGGFLRKLSLRGCIGVGDSSLKTFAQNCRNIEHL-NLNGCTKITDSTCYS 124
Query: 157 SFMNVSESHFVSALTVVFINSKSLSSIKIEDTPVDDPSLKILVANNSDTLRLPKMSSCPH 216
S+ + + V I + SL I + L +S C
Sbjct: 125 LSRFCSKLKHLDLTSCVSITNSSLKGI----------------SEGCRNLEYLNLSWCDQ 168
Query: 217 VSSDGILCVADRCQGLRELALNYYI-LTDELFLALSSETHVNLEHLRIDVVSENPGQIKF 275
++ DGI + C+GL+ L L L DE + + H L L + S +
Sbjct: 169 ITKDGIEALVRGCRGLKALLLRGCTQLEDEALKHIQNYCH-ELVSLNLQSCSRITDEGVV 227
Query: 276 HAVKK-HSWDALIKHSPRVNVVMHFFLYEEEFETFFKEETPVTHLYFGRSVSKVVLGRVG 334
+ H AL L +++ L +G
Sbjct: 228 QICRGCHRLQALC-------------------------------LSGCSNLTDASLTALG 256
Query: 335 LNCPRL--IELVVCA--------------NDLQPLDNE---------LICIAEHCTNLTA 369
LNCPRL +E C+ ++L+ +D E LI ++ HC L A
Sbjct: 257 LNCPRLQILEAARCSHLTDAGFTLLARNCHELEKMDLEECILITDSTLIQLSIHCPKLQA 316
Query: 370 LGLSKCEV 377
L LS CE+
Sbjct: 317 LSLSHCEL 324
Score = 30.4 bits (67), Expect = 3.3
Identities = 34/128 (26%), Positives = 54/128 (42%), Gaps = 14/128 (10%)
Query: 138 SQLVNCSIQTLGLISTAKPSFMNVSESHFVSA-LTVVFINSKSLSSIKIEDTPVDDPSLK 196
S L + S+ LGL SH A T++ N L + +E+ + S
Sbjct: 245 SNLTDASLTALGLNCPRLQILEAARCSHLTDAGFTLLARNCHELEKMDLEECILITDSTL 304
Query: 197 ILVANNSDTLRLPKMSSCPHVSSDGILCVADRCQG---LRELALNYYILTDELFLALSSE 253
I ++ + L+ +S C ++ DGIL +++ G LR L L+ +L
Sbjct: 305 IQLSIHCPKLQALSLSHCELITDDGILHLSNSTCGHERLRVLELDNCLLI---------- 354
Query: 254 THVNLEHL 261
T V LEHL
Sbjct: 355 TDVALEHL 362
>gi|62865871 coiled-coil domain containing 132 isoform a [Homo
sapiens]
Length = 964
Score = 34.7 bits (78), Expect = 0.17
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 198 LVANNSDTL--RLPKMSSCPHVSSDGIL-CVADRCQGLRELALNYY 240
L A N+DT +L C HV+ D + C+AD C+ L E+ L+YY
Sbjct: 295 LCAGNTDTKFQKLQYKDLCTHVTPDSYIPCLADLCKALWEVMLSYY 340
>gi|83035136 F-box protein 31 [Homo sapiens]
Length = 539
Score = 32.7 bits (73), Expect = 0.66
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 45 LPHHVVLQIFQYLPLLDRACASSVCRRWNEVFHISDLWRK 84
LP ++++IF LP D + VC ++ + H +WR+
Sbjct: 70 LPPELLVEIFASLPGTDLPSLAQVCTKFRRILHTDTIWRR 109
>gi|24308129 F-box and WD repeat domain containing 5 [Homo
sapiens]
Length = 566
Score = 32.7 bits (73), Expect = 0.66
Identities = 19/49 (38%), Positives = 23/49 (46%)
Query: 45 LPHHVVLQIFQYLPLLDRACASSVCRRWNEVFHISDLWRKFEFELNQSA 93
LP +V QIF L D A VCR+W V LWR+ + Q A
Sbjct: 9 LPDSLVYQIFLSLGPADVLAAGLVCRQWQAVSRDEFLWREQFYRYYQVA 57
>gi|24025682 F-box and leucine-rich repeat protein 16 [Homo sapiens]
Length = 479
Score = 32.7 bits (73), Expect = 0.66
Identities = 40/196 (20%), Positives = 74/196 (37%), Gaps = 22/196 (11%)
Query: 53 IFQYLPLLDRACASSVCRRWNEVFHISDLWRKFEFELNQSATSSFKSTHPDLIQQII--- 109
+F Y ++ + VC+ W V + W L H + ++
Sbjct: 105 LFWYFSACEKCVLAQVCKAWRRVLYQPKFWAGLTPVL-----------HAKELYNVLPGG 153
Query: 110 KKHFAHLQYVSFKVDSSAESAEAACDI-LSQLVNCSIQTLGLISTAKPSFMNVSESHFVS 168
+K F +LQ +A E C + +S L C +S M++ S
Sbjct: 154 EKEFVNLQ------GFAARGFEGFCLVGVSDLDICEFIDNYALSKKGVKAMSLKRSTITD 207
Query: 169 ALTVVFINSKSLSSIKIEDTPVDDPSLKILVANNSDTLRLPKMSSCPHVSSDGILCVADR 228
A V + +++E + +D + L ++ S + +S C +V+ D I ++
Sbjct: 208 AGLEVMLEQMQ-GVVRLELSGCNDFTEAGLWSSLSARITSLSVSDCINVADDAIAAISQL 266
Query: 229 CQGLRELALNYYILTD 244
L EL+L Y +TD
Sbjct: 267 LPNLAELSLQAYHVTD 282
Score = 30.0 bits (66), Expect = 4.3
Identities = 35/147 (23%), Positives = 64/147 (43%), Gaps = 16/147 (10%)
Query: 119 VSFKVDSSAESAEAACDILSQLVNCSIQTLGLISTAKPSFMNVSESHFVSALTVVFINSK 178
VS ++ + ++ A +L L S+Q + TA ++ + H L +
Sbjct: 249 VSDCINVADDAIAAISQLLPNLAELSLQAYHVTDTAL-AYFTARQGHSTHTLRL------ 301
Query: 179 SLSSIKIEDTPVDDPSLKILVANNSDTLRLPKMSSCPHVSSDGILCVADRCQGLRELALN 238
LS +I + V + V ++ L +S C V+ DG+ VA+ + LR L L+
Sbjct: 302 -LSCWEITNHGV------VNVVHSLPNLTALSLSGCSKVTDDGVELVAENLRKLRSLDLS 354
Query: 239 YY-ILTDELFLALSSETHVNLEHLRID 264
+ +TD ++ + H LE L +D
Sbjct: 355 WCPRITDMALEYVACDLH-RLEELVLD 380
>gi|28827813 NLR family, pyrin domain containing 14 [Homo sapiens]
Length = 1093
Score = 32.0 bits (71), Expect = 1.1
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Query: 330 LGRVGLNCPRLIELVVCANDLQPLDNELICIA---EHCTNLTALGLSKCEVS--CSAFIR 384
L V LN P L L + NDLQ +++C A +C N+ LGL C ++ C +
Sbjct: 949 LASVILNNPNLRSLDLGNNDLQDDGVKILCDALRYPNC-NIQRLGLEYCGLTSLCCQDLS 1007
Query: 385 FVRLCERRLTQLSVMEEVL 403
+C +RL ++++ + L
Sbjct: 1008 SALICNKRLIKMNLTQNTL 1026
>gi|67003566 F-box protein 48 [Homo sapiens]
Length = 155
Score = 31.6 bits (70), Expect = 1.5
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 45 LPHHVVLQIFQYLPLLDRACASSVCRRWNEVFHISD-LWR 83
LP + +IF L + AS CR WN+ SD LW+
Sbjct: 38 LPAEITFKIFSQLDIRSLCRASLTCRSWNDTIRNSDSLWK 77
>gi|157743247 F-box protein 45 [Homo sapiens]
Length = 286
Score = 31.6 bits (70), Expect = 1.5
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 43 GSLPHHVVLQIFQYLPLLDRACASSVCRRWNEVFH---ISDLWR 83
G LP V+ +F YL L + + VC+ W H S++WR
Sbjct: 37 GRLPSRVLELVFSYLELSELRSCALVCKHWYRCLHGDENSEVWR 80
>gi|51873034 F-box and leucine-rich repeat protein 9 [Homo sapiens]
Length = 223
Score = 31.2 bits (69), Expect = 1.9
Identities = 17/63 (26%), Positives = 32/63 (50%)
Query: 206 LRLPKMSSCPHVSSDGILCVADRCQGLRELALNYYILTDELFLALSSETHVNLEHLRIDV 265
LR +S P ++ +G++ VA C L LAL++ + A ++ + L+HL +
Sbjct: 102 LRQLSLSLLPELTDNGLVAVARGCPSLEHLALSHCSRLSDKGWAQAASSWPRLQHLNLSS 161
Query: 266 VSE 268
S+
Sbjct: 162 CSQ 164
>gi|16306591 F-box and leucine-rich repeat protein 9 [Homo sapiens]
Length = 223
Score = 31.2 bits (69), Expect = 1.9
Identities = 17/63 (26%), Positives = 32/63 (50%)
Query: 206 LRLPKMSSCPHVSSDGILCVADRCQGLRELALNYYILTDELFLALSSETHVNLEHLRIDV 265
LR +S P ++ +G++ VA C L LAL++ + A ++ + L+HL +
Sbjct: 102 LRQLSLSLLPELTDNGLVAVARGCPSLEHLALSHCSRLSDKGWAQAASSWPRLQHLNLSS 161
Query: 266 VSE 268
S+
Sbjct: 162 CSQ 164
>gi|74048554 cancer susceptibility candidate 5 isoform 2 [Homo
sapiens]
Length = 2316
Score = 30.4 bits (67), Expect = 3.3
Identities = 18/64 (28%), Positives = 31/64 (48%)
Query: 159 MNVSESHFVSALTVVFINSKSLSSIKIEDTPVDDPSLKILVANNSDTLRLPKMSSCPHVS 218
M++++SH V+ +F +S I TP + L+ L+ + D +S PHVS
Sbjct: 484 MDITKSHTVAIDNQIFKQDQSNVQIAAAPTPEKEMMLQNLMTTSEDGKMNVNCNSVPHVS 543
Query: 219 SDGI 222
+ I
Sbjct: 544 KERI 547
>gi|74048514 cancer susceptibility candidate 5 isoform 1 [Homo
sapiens]
Length = 2342
Score = 30.4 bits (67), Expect = 3.3
Identities = 18/64 (28%), Positives = 31/64 (48%)
Query: 159 MNVSESHFVSALTVVFINSKSLSSIKIEDTPVDDPSLKILVANNSDTLRLPKMSSCPHVS 218
M++++SH V+ +F +S I TP + L+ L+ + D +S PHVS
Sbjct: 510 MDITKSHTVAIDNQIFKQDQSNVQIAAAPTPEKEMMLQNLMTTSEDGKMNVNCNSVPHVS 569
Query: 219 SDGI 222
+ I
Sbjct: 570 KERI 573
>gi|61966701 dorsal neural-tube nuclear protein [Homo sapiens]
Length = 398
Score = 30.4 bits (67), Expect = 3.3
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 170 LTVVFINSKSLSSIKIEDTPVDDPSLKILVANNSDTLRLPKMSSCPHVSSDGI 222
+T NSKSL S+ ED DD +K ++++ D+ LP + + P S G+
Sbjct: 292 MTQTLKNSKSLCSLNYEDDDEDDTPVKTVLSSPCDSRGLPGI-TMPGCSQRGL 343
>gi|157168349 F-box and leucine-rich repeat protein 19 [Homo
sapiens]
Length = 694
Score = 30.0 bits (66), Expect = 4.3
Identities = 14/50 (28%), Positives = 23/50 (46%)
Query: 45 LPHHVVLQIFQYLPLLDRACASSVCRRWNEVFHISDLWRKFEFELNQSAT 94
LP L++FQ+L + VCR W+ + LW + + +S T
Sbjct: 424 LPRAAWLRVFQHLGPRELCICMRVCRTWSRWCYDKRLWPRMDLSRRKSLT 473
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.135 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,271,478
Number of Sequences: 37866
Number of extensions: 624343
Number of successful extensions: 1506
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1424
Number of HSP's gapped (non-prelim): 86
length of query: 434
length of database: 18,247,518
effective HSP length: 105
effective length of query: 329
effective length of database: 14,271,588
effective search space: 4695352452
effective search space used: 4695352452
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.