Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 148664194
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|148664194 hypothetical protein LOC146556 isoform 2 [Homo
sapiens]
(399 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|148664194 hypothetical protein LOC146556 isoform 2 [Homo sapi... 815 0.0
gi|148664240 hypothetical protein LOC146556 isoform 1 [Homo sapi... 727 0.0
gi|170784809 kinesin family member 17 isoform b [Homo sapiens] 37 0.031
gi|170784807 kinesin family member 17 isoform a [Homo sapiens] 36 0.070
gi|157743252 pecanex-like 3 [Homo sapiens] 32 0.78
gi|40385873 G protein-coupled receptor 150 [Homo sapiens] 32 1.3
gi|47519616 tropomyosin 2 (beta) isoform 2 [Homo sapiens] 31 2.3
gi|42476296 tropomyosin 2 (beta) isoform 1 [Homo sapiens] 31 2.3
gi|28872792 CDK5 regulatory subunit associated protein 3 [Homo s... 30 2.9
gi|118572596 peripherin 2 [Homo sapiens] 30 5.0
gi|57977325 membrane-associated ring finger (C3HC4) 4 [Homo sapi... 30 5.0
gi|122937321 UNC homeobox [Homo sapiens] 30 5.0
gi|38146118 hypothetical protein LOC10712 isoform b [Homo sapiens] 29 6.6
gi|38146116 hypothetical protein LOC10712 isoform a [Homo sapiens] 29 6.6
gi|22035569 GC-rich sequence DNA-binding factor candidate isofor... 29 6.6
gi|22035565 GC-rich sequence DNA-binding factor candidate isofor... 29 6.6
gi|209862765 RUN and SH3 domain containing 2 [Homo sapiens] 29 6.6
gi|55741719 RUN and SH3 domain containing 2 [Homo sapiens] 29 6.6
gi|50843837 hypothetical protein LOC55701 [Homo sapiens] 29 6.6
gi|24431933 reticulon 4 isoform B [Homo sapiens] 29 8.6
gi|47519490 reticulon 4 isoform D [Homo sapiens] 29 8.6
gi|24431935 reticulon 4 isoform A [Homo sapiens] 29 8.6
gi|88196790 coiled-coil domain containing 88 [Homo sapiens] 29 8.6
>gi|148664194 hypothetical protein LOC146556 isoform 2 [Homo
sapiens]
Length = 399
Score = 815 bits (2106), Expect = 0.0
Identities = 399/399 (100%), Positives = 399/399 (100%)
Query: 1 MSARGRWEGGGRRACRGSLGLARAQGAERVTSSEQRPAMASLGLLLLLLLTALPPLWSSS 60
MSARGRWEGGGRRACRGSLGLARAQGAERVTSSEQRPAMASLGLLLLLLLTALPPLWSSS
Sbjct: 1 MSARGRWEGGGRRACRGSLGLARAQGAERVTSSEQRPAMASLGLLLLLLLTALPPLWSSS 60
Query: 61 LPGLDTAESKATIADLILSALERATVFLEQRLPEINLDGMVGVRVLEEQLKSVREKWAQE 120
LPGLDTAESKATIADLILSALERATVFLEQRLPEINLDGMVGVRVLEEQLKSVREKWAQE
Sbjct: 61 LPGLDTAESKATIADLILSALERATVFLEQRLPEINLDGMVGVRVLEEQLKSVREKWAQE 120
Query: 121 PLLQPLSLRVGMLGEKLEAAIQRSLHYLKLSDPKYLREFQLTLQPGFWKLPHAWIHTDAS 180
PLLQPLSLRVGMLGEKLEAAIQRSLHYLKLSDPKYLREFQLTLQPGFWKLPHAWIHTDAS
Sbjct: 121 PLLQPLSLRVGMLGEKLEAAIQRSLHYLKLSDPKYLREFQLTLQPGFWKLPHAWIHTDAS 180
Query: 181 LVYPTFGPQDSFSEERSDVCLVQLLGTGTDSSEPCGLSDLCRSLMTKPGCSGYCLSHQLL 240
LVYPTFGPQDSFSEERSDVCLVQLLGTGTDSSEPCGLSDLCRSLMTKPGCSGYCLSHQLL
Sbjct: 181 LVYPTFGPQDSFSEERSDVCLVQLLGTGTDSSEPCGLSDLCRSLMTKPGCSGYCLSHQLL 240
Query: 241 FFLWARMRGCTQGPLQQSQDYINLFCANMMDLNRRAEAIGYAYPTRDIFMENIMFCGMGG 300
FFLWARMRGCTQGPLQQSQDYINLFCANMMDLNRRAEAIGYAYPTRDIFMENIMFCGMGG
Sbjct: 241 FFLWARMRGCTQGPLQQSQDYINLFCANMMDLNRRAEAIGYAYPTRDIFMENIMFCGMGG 300
Query: 301 FSDFYKLRWLEAILSWQKQQEGCFGEPDAEDEELSKAIQYQQHFSRRVKRREKQFPDGCS 360
FSDFYKLRWLEAILSWQKQQEGCFGEPDAEDEELSKAIQYQQHFSRRVKRREKQFPDGCS
Sbjct: 301 FSDFYKLRWLEAILSWQKQQEGCFGEPDAEDEELSKAIQYQQHFSRRVKRREKQFPDGCS 360
Query: 361 SHNTATAVAALGGFLYILAEYPPANREPHPSTPPPPSSR 399
SHNTATAVAALGGFLYILAEYPPANREPHPSTPPPPSSR
Sbjct: 361 SHNTATAVAALGGFLYILAEYPPANREPHPSTPPPPSSR 399
>gi|148664240 hypothetical protein LOC146556 isoform 1 [Homo
sapiens]
Length = 440
Score = 727 bits (1877), Expect = 0.0
Identities = 358/360 (99%), Positives = 358/360 (99%)
Query: 1 MSARGRWEGGGRRACRGSLGLARAQGAERVTSSEQRPAMASLGLLLLLLLTALPPLWSSS 60
MSARGRWEGGGRRACRGSLGLARAQGAERVTSSEQRPAMASLGLLLLLLLTALPPLWSSS
Sbjct: 1 MSARGRWEGGGRRACRGSLGLARAQGAERVTSSEQRPAMASLGLLLLLLLTALPPLWSSS 60
Query: 61 LPGLDTAESKATIADLILSALERATVFLEQRLPEINLDGMVGVRVLEEQLKSVREKWAQE 120
LPGLDTAESKATIADLILSALERATVFLEQRLPEINLDGMVGVRVLEEQLKSVREKWAQE
Sbjct: 61 LPGLDTAESKATIADLILSALERATVFLEQRLPEINLDGMVGVRVLEEQLKSVREKWAQE 120
Query: 121 PLLQPLSLRVGMLGEKLEAAIQRSLHYLKLSDPKYLREFQLTLQPGFWKLPHAWIHTDAS 180
PLLQPLSLRVGMLGEKLEAAIQRSLHYLKLSDPKYLREFQLTLQPGFWKLPHAWIHTDAS
Sbjct: 121 PLLQPLSLRVGMLGEKLEAAIQRSLHYLKLSDPKYLREFQLTLQPGFWKLPHAWIHTDAS 180
Query: 181 LVYPTFGPQDSFSEERSDVCLVQLLGTGTDSSEPCGLSDLCRSLMTKPGCSGYCLSHQLL 240
LVYPTFGPQDSFSEERSDVCLVQLLGTGTDSSEPCGLSDLCRSLMTKPGCSGYCLSHQLL
Sbjct: 181 LVYPTFGPQDSFSEERSDVCLVQLLGTGTDSSEPCGLSDLCRSLMTKPGCSGYCLSHQLL 240
Query: 241 FFLWARMRGCTQGPLQQSQDYINLFCANMMDLNRRAEAIGYAYPTRDIFMENIMFCGMGG 300
FFLWARMRGCTQGPLQQSQDYINLFCANMMDLNRRAEAIGYAYPTRDIFMENIMFCGMGG
Sbjct: 241 FFLWARMRGCTQGPLQQSQDYINLFCANMMDLNRRAEAIGYAYPTRDIFMENIMFCGMGG 300
Query: 301 FSDFYKLRWLEAILSWQKQQEGCFGEPDAEDEELSKAIQYQQHFSRRVKRREKQFPDGCS 360
FSDFYKLRWLEAILSWQKQQEGCFGEPDAEDEELSKAIQYQQHFSRRVKRREKQFPD S
Sbjct: 301 FSDFYKLRWLEAILSWQKQQEGCFGEPDAEDEELSKAIQYQQHFSRRVKRREKQFPDSRS 360
>gi|170784809 kinesin family member 17 isoform b [Homo sapiens]
Length = 1028
Score = 37.0 bits (84), Expect = 0.031
Identities = 40/163 (24%), Positives = 69/163 (42%), Gaps = 27/163 (16%)
Query: 65 DTAESKATIADLILSALERATVFLEQRLPEINLDGMVGVRVLEEQLKSVREKWAQEPLLQ 124
+ +K+ + + + L A V ++ E L+ + + L ++R + LLQ
Sbjct: 806 EEVRAKSKLLEKMQRKLRAAEVEIKDLQSEFQLEKI-------DYLATIRRQERDSMLLQ 858
Query: 125 PLSLRVGMLGEKLEAAIQRSLHYLKLSDPKYLREFQLTLQPGFWKLPHAWIHTDASLVYP 184
L E+++ I+R +Y L K LRE GFWK+PH I T SL
Sbjct: 859 QLL-------EQVQPLIRRDCNYSNLE--KILRESCWDEDNGFWKIPHPVI-TKTSLPVV 908
Query: 185 TFGPQDSFSEERSDVCLVQLLGTGTDSSEPCGLSDLCRSLMTK 227
+ GPQ+ + + S D+ EP D R ++++
Sbjct: 909 STGPQNKPARKTS----------AADNGEPNMEDDRYRLMLSR 941
>gi|170784807 kinesin family member 17 isoform a [Homo sapiens]
Length = 1029
Score = 35.8 bits (81), Expect = 0.070
Identities = 38/163 (23%), Positives = 68/163 (41%), Gaps = 26/163 (15%)
Query: 65 DTAESKATIADLILSALERATVFLEQRLPEINLDGMVGVRVLEEQLKSVREKWAQEPLLQ 124
+ +K+ + + + L A V ++ E L+ + + L ++R + LLQ
Sbjct: 806 EEVRAKSKLLEKMQRKLRAAEVEIKDLQSEFQLEKI-------DYLATIRRQERDSMLLQ 858
Query: 125 PLSLRVGMLGEKLEAAIQRSLHYLKLSDPKYLREFQLTLQPGFWKLPHAWIHTDASLVYP 184
L E+++ I+R +Y L K LRE GFWK+PH I + V
Sbjct: 859 QLL-------EQVQPLIRRDCNYSNLE--KILRESCWDEDNGFWKIPHPVITKTSLPVAV 909
Query: 185 TFGPQDSFSEERSDVCLVQLLGTGTDSSEPCGLSDLCRSLMTK 227
+ GPQ+ + + S D+ EP D R ++++
Sbjct: 910 STGPQNKPARKTS----------AADNGEPNMEDDRYRLMLSR 942
>gi|157743252 pecanex-like 3 [Homo sapiens]
Length = 2034
Score = 32.3 bits (72), Expect = 0.78
Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Query: 5 GRWEGGGRRACRGSLGLARAQGAERVTSSEQRPAMASLGLLLLL----LLTALPPLWSSS 60
G+W GGR+ GS G + + T Q P SL L L L A PP S
Sbjct: 1934 GKWSLGGRKGLGGSDGEPASGSPKGGTPKSQAPLDLSLSLSLSLSPDVSTEASPPRASQD 1993
Query: 61 LPGLDTA 67
+P LD++
Sbjct: 1994 IPCLDSS 2000
>gi|40385873 G protein-coupled receptor 150 [Homo sapiens]
Length = 434
Score = 31.6 bits (70), Expect = 1.3
Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
Query: 349 KRREKQFPDGCSSHNTATAVAALGGFLYILAEYPPA----NREPHPSTPPPP 396
+RR + P G A A+AALG L +L PPA P P PPPP
Sbjct: 147 RRRAVRLPHGRPL--PARALAALGWLLALLLALPPAFVVRGDSPSPLPPPPP 196
>gi|47519616 tropomyosin 2 (beta) isoform 2 [Homo sapiens]
Length = 284
Score = 30.8 bits (68), Expect = 2.3
Identities = 23/92 (25%), Positives = 43/92 (46%)
Query: 64 LDTAESKATIADLILSALERATVFLEQRLPEINLDGMVGVRVLEEQLKSVREKWAQEPLL 123
L+ AE KAT A+ +++L R +E+ L ++ LEE K+ E ++
Sbjct: 71 LEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVI 130
Query: 124 QPLSLRVGMLGEKLEAAIQRSLHYLKLSDPKY 155
+ +++ E E ++ + H + SD KY
Sbjct: 131 ENRAMKDEEKMELQEMQLKEAKHIAEDSDRKY 162
>gi|42476296 tropomyosin 2 (beta) isoform 1 [Homo sapiens]
Length = 284
Score = 30.8 bits (68), Expect = 2.3
Identities = 23/92 (25%), Positives = 43/92 (46%)
Query: 64 LDTAESKATIADLILSALERATVFLEQRLPEINLDGMVGVRVLEEQLKSVREKWAQEPLL 123
L+ AE KAT A+ +++L R +E+ L ++ LEE K+ E ++
Sbjct: 71 LEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVI 130
Query: 124 QPLSLRVGMLGEKLEAAIQRSLHYLKLSDPKY 155
+ +++ E E ++ + H + SD KY
Sbjct: 131 ENRAMKDEEKMELQEMQLKEAKHIAEDSDRKY 162
>gi|28872792 CDK5 regulatory subunit associated protein 3 [Homo
sapiens]
Length = 506
Score = 30.4 bits (67), Expect = 2.9
Identities = 18/63 (28%), Positives = 36/63 (57%)
Query: 81 LERATVFLEQRLPEINLDGMVGVRVLEEQLKSVREKWAQEPLLQPLSLRVGMLGEKLEAA 140
++R T FL+Q+L + L + ++++Q +++ E+ A EP L L + L + +EA
Sbjct: 430 VDRVTEFLQQKLKQSQLLALKKELMVQKQQEALEEQAALEPKLDLLLEKTKELQKLIEAD 489
Query: 141 IQR 143
I +
Sbjct: 490 ISK 492
>gi|118572596 peripherin 2 [Homo sapiens]
Length = 346
Score = 29.6 bits (65), Expect = 5.0
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 234 CLSHQLLFFLWARMRGCTQGPLQQSQDYINLFCANMMDLNRRAEAIGYAYPTRDIFMENI 293
C+ ++ FL A +G L+ + + N M R + G + + I M I
Sbjct: 105 CVLFNIILFLVALCCFLLRGSLENT---LGQGLKNGMKYYRDTDTPGRCFMKKTIDMLQI 161
Query: 294 MF--CGMGGFSDFYKLRWL 310
F CG GF D+++++W+
Sbjct: 162 EFKCCGNNGFRDWFEIQWI 180
>gi|57977325 membrane-associated ring finger (C3HC4) 4 [Homo
sapiens]
Length = 410
Score = 29.6 bits (65), Expect = 5.0
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 356 PDGCSSHNTATAVAALGGFLYILAEYPPANREPHPSTPPPP 396
P G +++NT A+ A GG+ REP P PPPP
Sbjct: 70 PPGLAANNTLPALGA-GGWAGWRGPREVVGREPPPVPPPPP 109
>gi|122937321 UNC homeobox [Homo sapiens]
Length = 531
Score = 29.6 bits (65), Expect = 5.0
Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 17/84 (20%)
Query: 323 CFGEPDAEDEELSKAIQYQQHFSRRVKR-------REKQFPDGCSSHNTATAVAALGGFL 375
C GEP +E K ++ + R+ ++ R P G S H+ ++ + GG
Sbjct: 182 CSGEPMDPEEIARKELEKMEKKKRKHEKKLLKSQGRHLHSPGGLSLHSAPSSDSDSGG-- 239
Query: 376 YILAEYPPANREPHPSTPPPPSSR 399
P P PPPP+++
Sbjct: 240 --------GGLSPEPPEPPPPAAK 255
>gi|38146118 hypothetical protein LOC10712 isoform b [Homo sapiens]
Length = 572
Score = 29.3 bits (64), Expect = 6.6
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 382 PPANREPHPSTPPP 395
PP +R PHP++PPP
Sbjct: 376 PPGHRPPHPASPPP 389
>gi|38146116 hypothetical protein LOC10712 isoform a [Homo sapiens]
Length = 668
Score = 29.3 bits (64), Expect = 6.6
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 382 PPANREPHPSTPPP 395
PP +R PHP++PPP
Sbjct: 472 PPGHRPPHPASPPP 485
>gi|22035569 GC-rich sequence DNA-binding factor candidate isoform 2
[Homo sapiens]
Length = 815
Score = 29.3 bits (64), Expect = 6.6
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Query: 299 GGFSDFYKLRWLEAILSWQKQQEGCFGEPDAEDEELSKAIQ--YQQHFSRRVKRREKQFP 356
GG + YK +L+ + + + CF E EL AI Y+Q SR V+RR+
Sbjct: 435 GGIGERYK--FLQEMRGYVQDLLECFSEKVPLINELESAIHQLYKQRASRLVQRRQDDIK 492
Query: 357 DGC---SSHNTATAVA 369
D SSH+ +A
Sbjct: 493 DESSEFSSHSNKALMA 508
>gi|22035565 GC-rich sequence DNA-binding factor candidate isoform 1
[Homo sapiens]
Length = 917
Score = 29.3 bits (64), Expect = 6.6
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Query: 299 GGFSDFYKLRWLEAILSWQKQQEGCFGEPDAEDEELSKAIQ--YQQHFSRRVKRREKQFP 356
GG + YK +L+ + + + CF E EL AI Y+Q SR V+RR+
Sbjct: 435 GGIGERYK--FLQEMRGYVQDLLECFSEKVPLINELESAIHQLYKQRASRLVQRRQDDIK 492
Query: 357 DGC---SSHNTATAVA 369
D SSH+ +A
Sbjct: 493 DESSEFSSHSNKALMA 508
>gi|209862765 RUN and SH3 domain containing 2 [Homo sapiens]
Length = 1516
Score = 29.3 bits (64), Expect = 6.6
Identities = 18/61 (29%), Positives = 23/61 (37%)
Query: 169 KLPHAWIHTDASLVYPTFGPQDSFSEERSDVCLVQLLGTGTDSSEPCGLSDLCRSLMTKP 228
+LP W+ D S+ S E L + SS PC + LC L T P
Sbjct: 1404 RLPSDWLSLDKSMFQLVAQTVGSRREPEPKESLQEPHSPALPSSPPCEVQALCHHLATGP 1463
Query: 229 G 229
G
Sbjct: 1464 G 1464
>gi|55741719 RUN and SH3 domain containing 2 [Homo sapiens]
Length = 1516
Score = 29.3 bits (64), Expect = 6.6
Identities = 18/61 (29%), Positives = 23/61 (37%)
Query: 169 KLPHAWIHTDASLVYPTFGPQDSFSEERSDVCLVQLLGTGTDSSEPCGLSDLCRSLMTKP 228
+LP W+ D S+ S E L + SS PC + LC L T P
Sbjct: 1404 RLPSDWLSLDKSMFQLVAQTVGSRREPEPKESLQEPHSPALPSSPPCEVQALCHHLATGP 1463
Query: 229 G 229
G
Sbjct: 1464 G 1464
>gi|50843837 hypothetical protein LOC55701 [Homo sapiens]
Length = 1519
Score = 29.3 bits (64), Expect = 6.6
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Query: 36 RPAMASLGLLLLLLLTALPPLWSSSLPGLDTAESKATIADLILSALERATVFLEQRLPEI 95
RP + +LGL +LL L PPL + +P L + ++R + + LP
Sbjct: 580 RPDLQTLGLSVLLDLRQAPPLPPALIPALSQLQDSGD-----PPLVQRLLILIHDDLP-T 633
Query: 96 NLDGMVGVRVLEE 108
L G G VL E
Sbjct: 634 ELCGFQGAEVLSE 646
>gi|24431933 reticulon 4 isoform B [Homo sapiens]
Length = 373
Score = 28.9 bits (63), Expect = 8.6
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 326 EPDAEDEELSKAIQYQQHFSRRVKRREKQFPDGCSSHNTATAVAALGGFLYILAEY-PPA 384
EP+ E+EE + + + ++ E++ G S+ TA AA + ++ PPA
Sbjct: 30 EPEDEEEEEEEEEEDEDEDLEELEVLERKPAAGLSAAPVPTAPAAGAPLMDFGNDFVPPA 89
Query: 385 NREPHPSTPPPPSSR 399
R P P+ PP R
Sbjct: 90 PRGPLPAAPPVAPER 104
>gi|47519490 reticulon 4 isoform D [Homo sapiens]
Length = 392
Score = 28.9 bits (63), Expect = 8.6
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 326 EPDAEDEELSKAIQYQQHFSRRVKRREKQFPDGCSSHNTATAVAALGGFLYILAEY-PPA 384
EP+ E+EE + + + ++ E++ G S+ TA AA + ++ PPA
Sbjct: 30 EPEDEEEEEEEEEEDEDEDLEELEVLERKPAAGLSAAPVPTAPAAGAPLMDFGNDFVPPA 89
Query: 385 NREPHPSTPPPPSSR 399
R P P+ PP R
Sbjct: 90 PRGPLPAAPPVAPER 104
>gi|24431935 reticulon 4 isoform A [Homo sapiens]
Length = 1192
Score = 28.9 bits (63), Expect = 8.6
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 326 EPDAEDEELSKAIQYQQHFSRRVKRREKQFPDGCSSHNTATAVAALGGFLYILAEY-PPA 384
EP+ E+EE + + + ++ E++ G S+ TA AA + ++ PPA
Sbjct: 30 EPEDEEEEEEEEEEDEDEDLEELEVLERKPAAGLSAAPVPTAPAAGAPLMDFGNDFVPPA 89
Query: 385 NREPHPSTPPPPSSR 399
R P P+ PP R
Sbjct: 90 PRGPLPAAPPVAPER 104
>gi|88196790 coiled-coil domain containing 88 [Homo sapiens]
Length = 1476
Score = 28.9 bits (63), Expect = 8.6
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 79 SALERATVFLEQRLPEINLDGMVGVRVLEEQLKSVREKWAQEPLLQPLSLRVGMLGEKLE 138
S L + E+R+ + +G + LEE + REK A + L+ +R LG +LE
Sbjct: 833 SRLRAQSEAAEERMQVLESEGR---QHLEEAERERREKEALQAELEKAVVRGKELGARLE 889
Query: 139 AAIQRSLHYLKLSDPKYLRE 158
+QR L L ++LRE
Sbjct: 890 -HLQRELEQAALERQEFLRE 908
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.136 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,015,232
Number of Sequences: 37866
Number of extensions: 798996
Number of successful extensions: 3862
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 3849
Number of HSP's gapped (non-prelim): 31
length of query: 399
length of database: 18,247,518
effective HSP length: 104
effective length of query: 295
effective length of database: 14,309,454
effective search space: 4221288930
effective search space used: 4221288930
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.