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Search of human proteins with 148236295
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|148236295 stromal antigen 3-like 3 [Homo sapiens]
(134 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|148236295 stromal antigen 3-like 3 [Homo sapiens] 275 6e-75
gi|148226757 STAG3-like [Homo sapiens] 269 4e-73
gi|50726994 stromal antigen 3-like 1 isoform 1 [Homo sapiens] 233 5e-62
gi|57863310 stromal antigen 3 [Homo sapiens] 226 3e-60
gi|31563531 stromal antigen 2 isoform b [Homo sapiens] 159 5e-40
gi|112789530 stromal antigen 2 isoform b [Homo sapiens] 159 5e-40
gi|112789528 stromal antigen 2 isoform a [Homo sapiens] 159 5e-40
gi|112789526 stromal antigen 2 isoform a [Homo sapiens] 159 5e-40
gi|62243696 stromal antigen 1 [Homo sapiens] 159 6e-40
gi|50726989 stromal antigen 3-like 1 isoform 2 [Homo sapiens] 116 6e-27
gi|22027651 adaptor-related protein complex 1 beta 1 subunit iso... 30 0.44
gi|22027653 adaptor-related protein complex 1 beta 1 subunit iso... 30 0.44
gi|57222563 colonic and hepatic tumor over-expressed protein iso... 28 2.2
gi|57164942 colonic and hepatic tumor over-expressed protein iso... 28 2.2
gi|71773106 adaptor-related protein complex 2, beta 1 subunit is... 28 2.9
gi|4557469 adaptor-related protein complex 2, beta 1 subunit iso... 28 2.9
gi|33519450 NLR family, pyrin domain containing 9 [Homo sapiens] 27 3.8
gi|29171734 eukaryotic translation initiation factor 2C, 2 [Homo... 27 6.4
gi|52138513 SIN3 homolog B, transcription regulator [Homo sapiens] 26 8.4
gi|13129124 caspase recruitment domain protein 14 isoform 1 [Hom... 26 8.4
>gi|148236295 stromal antigen 3-like 3 [Homo sapiens]
Length = 134
Score = 275 bits (704), Expect = 6e-75
Identities = 134/134 (100%), Positives = 134/134 (100%)
Query: 1 MIFSMLRKLPKVTCRDVLPEIRAICIEEIGCWMQSYSTSFLTDSYLKYIGWTLHDKHREV 60
MIFSMLRKLPKVTCRDVLPEIRAICIEEIGCWMQSYSTSFLTDSYLKYIGWTLHDKHREV
Sbjct: 1 MIFSMLRKLPKVTCRDVLPEIRAICIEEIGCWMQSYSTSFLTDSYLKYIGWTLHDKHREV 60
Query: 61 RVKCVKALKGLYGNRDLTARLELFTGCFKDWMVSMIMDREYSVAVEAVRLLILILKNMEG 120
RVKCVKALKGLYGNRDLTARLELFTGCFKDWMVSMIMDREYSVAVEAVRLLILILKNMEG
Sbjct: 61 RVKCVKALKGLYGNRDLTARLELFTGCFKDWMVSMIMDREYSVAVEAVRLLILILKNMEG 120
Query: 121 VLMDVDCESVYPIV 134
VLMDVDCESVYPIV
Sbjct: 121 VLMDVDCESVYPIV 134
>gi|148226757 STAG3-like [Homo sapiens]
Length = 134
Score = 269 bits (688), Expect = 4e-73
Identities = 132/134 (98%), Positives = 133/134 (99%)
Query: 1 MIFSMLRKLPKVTCRDVLPEIRAICIEEIGCWMQSYSTSFLTDSYLKYIGWTLHDKHREV 60
MIFSMLRKLPKVTCRDVLPEIRAICIEEIGCWMQSYSTSFLTDSYLKYIGWTLHDKHREV
Sbjct: 1 MIFSMLRKLPKVTCRDVLPEIRAICIEEIGCWMQSYSTSFLTDSYLKYIGWTLHDKHREV 60
Query: 61 RVKCVKALKGLYGNRDLTARLELFTGCFKDWMVSMIMDREYSVAVEAVRLLILILKNMEG 120
RVKCVKALKGLYGNRDLTARLELFTG FKDWMVSMI+DREYSVAVEAVRLLILILKNMEG
Sbjct: 61 RVKCVKALKGLYGNRDLTARLELFTGRFKDWMVSMIVDREYSVAVEAVRLLILILKNMEG 120
Query: 121 VLMDVDCESVYPIV 134
VLMDVDCESVYPIV
Sbjct: 121 VLMDVDCESVYPIV 134
>gi|50726994 stromal antigen 3-like 1 isoform 1 [Homo sapiens]
Length = 205
Score = 233 bits (593), Expect = 5e-62
Identities = 114/116 (98%), Positives = 115/116 (99%)
Query: 1 MIFSMLRKLPKVTCRDVLPEIRAICIEEIGCWMQSYSTSFLTDSYLKYIGWTLHDKHREV 60
MIFSMLRKLPKVTCRDVLPEIRAICIEEIGCWMQSYSTSFLTDSYLKYIGWTLHDKHREV
Sbjct: 1 MIFSMLRKLPKVTCRDVLPEIRAICIEEIGCWMQSYSTSFLTDSYLKYIGWTLHDKHREV 60
Query: 61 RVKCVKALKGLYGNRDLTARLELFTGCFKDWMVSMIMDREYSVAVEAVRLLILILK 116
RVKCVKALKGLYGNRDLTARLELFTG FKDWMVSMI+DREYSVAVEAVRLLILILK
Sbjct: 61 RVKCVKALKGLYGNRDLTARLELFTGRFKDWMVSMIVDREYSVAVEAVRLLILILK 116
>gi|57863310 stromal antigen 3 [Homo sapiens]
Length = 1225
Score = 226 bits (577), Expect = 3e-60
Identities = 110/120 (91%), Positives = 113/120 (94%)
Query: 15 RDVLPEIRAICIEEIGCWMQSYSTSFLTDSYLKYIGWTLHDKHREVRVKCVKALKGLYGN 74
RDVLPEIRAICIEEIGCWMQSYSTSFLTDSYLKYIGWTLHDKHREVR+KCVKALKGLYGN
Sbjct: 314 RDVLPEIRAICIEEIGCWMQSYSTSFLTDSYLKYIGWTLHDKHREVRLKCVKALKGLYGN 373
Query: 75 RDLTARLELFTGCFKDWMVSMIMDREYSVAVEAVRLLILILKNMEGVLMDVDCESVYPIV 134
RDLT RLELFT FKD MVSM+MDREY VAVEAVRLLILILKNMEGVL D DCESVYP+V
Sbjct: 374 RDLTTRLELFTSRFKDRMVSMVMDREYDVAVEAVRLLILILKNMEGVLTDADCESVYPVV 433
>gi|31563531 stromal antigen 2 isoform b [Homo sapiens]
Length = 1231
Score = 159 bits (403), Expect = 5e-40
Identities = 74/120 (61%), Positives = 97/120 (80%)
Query: 15 RDVLPEIRAICIEEIGCWMQSYSTSFLTDSYLKYIGWTLHDKHREVRVKCVKALKGLYGN 74
RD + EIRAICIEEIG WM+ YS +FL DSYLKY+GWT+HDK EVR+KC+ AL+GLY N
Sbjct: 298 RDAIAEIRAICIEEIGIWMKMYSDAFLNDSYLKYVGWTMHDKQGEVRLKCLTALQGLYYN 357
Query: 75 RDLTARLELFTGCFKDWMVSMIMDREYSVAVEAVRLLILILKNMEGVLMDVDCESVYPIV 134
++L ++LELFT FKD +VSM +D+EY VAV+A++LL L+L++ E VL DCE+VY +V
Sbjct: 358 KELNSKLELFTSRFKDRIVSMTLDKEYDVAVQAIKLLTLVLQSSEEVLTAEDCENVYHLV 417
>gi|112789530 stromal antigen 2 isoform b [Homo sapiens]
Length = 1231
Score = 159 bits (403), Expect = 5e-40
Identities = 74/120 (61%), Positives = 97/120 (80%)
Query: 15 RDVLPEIRAICIEEIGCWMQSYSTSFLTDSYLKYIGWTLHDKHREVRVKCVKALKGLYGN 74
RD + EIRAICIEEIG WM+ YS +FL DSYLKY+GWT+HDK EVR+KC+ AL+GLY N
Sbjct: 298 RDAIAEIRAICIEEIGIWMKMYSDAFLNDSYLKYVGWTMHDKQGEVRLKCLTALQGLYYN 357
Query: 75 RDLTARLELFTGCFKDWMVSMIMDREYSVAVEAVRLLILILKNMEGVLMDVDCESVYPIV 134
++L ++LELFT FKD +VSM +D+EY VAV+A++LL L+L++ E VL DCE+VY +V
Sbjct: 358 KELNSKLELFTSRFKDRIVSMTLDKEYDVAVQAIKLLTLVLQSSEEVLTAEDCENVYHLV 417
>gi|112789528 stromal antigen 2 isoform a [Homo sapiens]
Length = 1268
Score = 159 bits (403), Expect = 5e-40
Identities = 74/120 (61%), Positives = 97/120 (80%)
Query: 15 RDVLPEIRAICIEEIGCWMQSYSTSFLTDSYLKYIGWTLHDKHREVRVKCVKALKGLYGN 74
RD + EIRAICIEEIG WM+ YS +FL DSYLKY+GWT+HDK EVR+KC+ AL+GLY N
Sbjct: 298 RDAIAEIRAICIEEIGIWMKMYSDAFLNDSYLKYVGWTMHDKQGEVRLKCLTALQGLYYN 357
Query: 75 RDLTARLELFTGCFKDWMVSMIMDREYSVAVEAVRLLILILKNMEGVLMDVDCESVYPIV 134
++L ++LELFT FKD +VSM +D+EY VAV+A++LL L+L++ E VL DCE+VY +V
Sbjct: 358 KELNSKLELFTSRFKDRIVSMTLDKEYDVAVQAIKLLTLVLQSSEEVLTAEDCENVYHLV 417
>gi|112789526 stromal antigen 2 isoform a [Homo sapiens]
Length = 1268
Score = 159 bits (403), Expect = 5e-40
Identities = 74/120 (61%), Positives = 97/120 (80%)
Query: 15 RDVLPEIRAICIEEIGCWMQSYSTSFLTDSYLKYIGWTLHDKHREVRVKCVKALKGLYGN 74
RD + EIRAICIEEIG WM+ YS +FL DSYLKY+GWT+HDK EVR+KC+ AL+GLY N
Sbjct: 298 RDAIAEIRAICIEEIGIWMKMYSDAFLNDSYLKYVGWTMHDKQGEVRLKCLTALQGLYYN 357
Query: 75 RDLTARLELFTGCFKDWMVSMIMDREYSVAVEAVRLLILILKNMEGVLMDVDCESVYPIV 134
++L ++LELFT FKD +VSM +D+EY VAV+A++LL L+L++ E VL DCE+VY +V
Sbjct: 358 KELNSKLELFTSRFKDRIVSMTLDKEYDVAVQAIKLLTLVLQSSEEVLTAEDCENVYHLV 417
>gi|62243696 stromal antigen 1 [Homo sapiens]
Length = 1258
Score = 159 bits (402), Expect = 6e-40
Identities = 76/120 (63%), Positives = 94/120 (78%)
Query: 15 RDVLPEIRAICIEEIGCWMQSYSTSFLTDSYLKYIGWTLHDKHREVRVKCVKALKGLYGN 74
RD + EIRAICIEEIG WM+ YS +FL DSYLKY+GWTLHD+ EVR+KC+KAL+ LY N
Sbjct: 301 RDAIAEIRAICIEEIGVWMKMYSDAFLNDSYLKYVGWTLHDRQGEVRLKCLKALQSLYTN 360
Query: 75 RDLTARLELFTGCFKDWMVSMIMDREYSVAVEAVRLLILILKNMEGVLMDVDCESVYPIV 134
R+L +LELFT FKD +VSM +D+EY VAVEA+RL+ LIL E L + DCE+VY +V
Sbjct: 361 RELFPKLELFTNRFKDRIVSMTLDKEYDVAVEAIRLVTLILHGSEEALSNEDCENVYHLV 420
>gi|50726989 stromal antigen 3-like 1 isoform 2 [Homo sapiens]
Length = 151
Score = 116 bits (290), Expect = 6e-27
Identities = 58/61 (95%), Positives = 60/61 (98%)
Query: 56 KHREVRVKCVKALKGLYGNRDLTARLELFTGCFKDWMVSMIMDREYSVAVEAVRLLILIL 115
+HREVRVKCVKALKGLYGNRDLTARLELFTG FKDWMVSMI+DREYSVAVEAVRLLILIL
Sbjct: 2 QHREVRVKCVKALKGLYGNRDLTARLELFTGRFKDWMVSMIVDREYSVAVEAVRLLILIL 61
Query: 116 K 116
K
Sbjct: 62 K 62
>gi|22027651 adaptor-related protein complex 1 beta 1 subunit
isoform a [Homo sapiens]
Length = 949
Score = 30.4 bits (67), Expect = 0.44
Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 9/118 (7%)
Query: 14 CRDVLPEIRAICIEEIGCWMQSYSTSFLTDSYLKYIGWTLHDKHREVRVKCVKALKGLYG 73
C D P IRA+ + +GC T +L + K L D+ VR + L+
Sbjct: 95 CEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRK----CLKDEDPYVRKTAAVCVAKLH- 149
Query: 74 NRDLTARLELFTGCFKDWMVSMIMDREYSVAVEAVRLLILILK-NMEGVLMDVDCESV 130
D+ A+L G F D + +I D V AV L I + + L+D++ +S+
Sbjct: 150 --DINAQLVEDQG-FLDTLKDLISDSNPMVVANAVAALSEIAESHPSSNLLDLNPQSI 204
>gi|22027653 adaptor-related protein complex 1 beta 1 subunit
isoform b [Homo sapiens]
Length = 942
Score = 30.4 bits (67), Expect = 0.44
Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 9/118 (7%)
Query: 14 CRDVLPEIRAICIEEIGCWMQSYSTSFLTDSYLKYIGWTLHDKHREVRVKCVKALKGLYG 73
C D P IRA+ + +GC T +L + K L D+ VR + L+
Sbjct: 95 CEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRK----CLKDEDPYVRKTAAVCVAKLH- 149
Query: 74 NRDLTARLELFTGCFKDWMVSMIMDREYSVAVEAVRLLILILK-NMEGVLMDVDCESV 130
D+ A+L G F D + +I D V AV L I + + L+D++ +S+
Sbjct: 150 --DINAQLVEDQG-FLDTLKDLISDSNPMVVANAVAALSEIAESHPSSNLLDLNPQSI 204
>gi|57222563 colonic and hepatic tumor over-expressed protein isoform
b [Homo sapiens]
Length = 1972
Score = 28.1 bits (61), Expect = 2.2
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 22 RAICIEEIGCWMQSYSTSFLTDS---YLKYIGWTLHDKHREVRVKCVKALKGLY 72
RA C+EE+GC ++SY + + LK I + D+ VR + + +Y
Sbjct: 1341 RAECLEELGCLVESYGMNVCQPTPGKALKEIAVHIGDRDNAVRNAALNTIVTVY 1394
>gi|57164942 colonic and hepatic tumor over-expressed protein isoform
a [Homo sapiens]
Length = 2032
Score = 28.1 bits (61), Expect = 2.2
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 22 RAICIEEIGCWMQSYSTSFLTDS---YLKYIGWTLHDKHREVRVKCVKALKGLY 72
RA C+EE+GC ++SY + + LK I + D+ VR + + +Y
Sbjct: 1341 RAECLEELGCLVESYGMNVCQPTPGKALKEIAVHIGDRDNAVRNAALNTIVTVY 1394
>gi|71773106 adaptor-related protein complex 2, beta 1 subunit
isoform a [Homo sapiens]
Length = 951
Score = 27.7 bits (60), Expect = 2.9
Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 14 CRDVLPEIRAICIEEIGCWMQSYSTSFLTDSYLKYIGWTLHDKHREVRVKCVKALKGLYG 73
C D P IRA+ + +GC T +L + K L D+ VR + L+
Sbjct: 95 CEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRK----CLKDEDPYVRKTAAVCVAKLH- 149
Query: 74 NRDLTARLELFTGCFKDWMVSMIMDREYSVAVEAVRLL 111
D+ A++ G F D + +I D V AV L
Sbjct: 150 --DINAQMVEDQG-FLDSLRDLIADSNPMVVANAVAAL 184
>gi|4557469 adaptor-related protein complex 2, beta 1 subunit
isoform b [Homo sapiens]
Length = 937
Score = 27.7 bits (60), Expect = 2.9
Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 14 CRDVLPEIRAICIEEIGCWMQSYSTSFLTDSYLKYIGWTLHDKHREVRVKCVKALKGLYG 73
C D P IRA+ + +GC T +L + K L D+ VR + L+
Sbjct: 95 CEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRK----CLKDEDPYVRKTAAVCVAKLH- 149
Query: 74 NRDLTARLELFTGCFKDWMVSMIMDREYSVAVEAVRLL 111
D+ A++ G F D + +I D V AV L
Sbjct: 150 --DINAQMVEDQG-FLDSLRDLIADSNPMVVANAVAAL 184
>gi|33519450 NLR family, pyrin domain containing 9 [Homo sapiens]
Length = 991
Score = 27.3 bits (59), Expect = 3.8
Identities = 15/64 (23%), Positives = 30/64 (46%)
Query: 26 IEEIGCWMQSYSTSFLTDSYLKYIGWTLHDKHREVRVKCVKALKGLYGNRDLTARLELFT 85
+ ++G +M ST + G+ L ++ +C+++L +R+ A ELF
Sbjct: 488 LTQVGIFMFGISTEEIVSMLETSFGFPLSKDLKQEITQCLESLSQCEADREAIAFQELFI 547
Query: 86 GCFK 89
G F+
Sbjct: 548 GLFE 551
>gi|29171734 eukaryotic translation initiation factor 2C, 2 [Homo
sapiens]
Length = 859
Score = 26.6 bits (57), Expect = 6.4
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 27 EEIGCWMQSYSTSFLTDSYLKYIGWTLHDKHREVRVKCVKALKGLYGNRD 76
EEI M+S SF TD Y++ G + D+ +V + ++ LYG R+
Sbjct: 377 EEISKLMRS--ASFNTDPYVREFGIMVKDEMTDVTGRVLQPPSILYGGRN 424
>gi|52138513 SIN3 homolog B, transcription regulator [Homo sapiens]
Length = 1162
Score = 26.2 bits (56), Expect = 8.4
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 31 CWMQSYSTSFLTDSYLKYIGWT 52
CW+ YS L D+++ + W+
Sbjct: 446 CWIPGYSAGVLNDTWVSFPSWS 467
>gi|13129124 caspase recruitment domain protein 14 isoform 1 [Homo
sapiens]
Length = 1004
Score = 26.2 bits (56), Expect = 8.4
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 33 MQSYSTSFLTDSYLKYIGWTLHDKHREVRVKCVKALKGLYGNRDLTARLELFTGCFKDWM 92
M+ ST F +S L + +TL HR R + V + G + L+ +L L G FK +
Sbjct: 798 MEGSSTCFWAESCLTLVPYTLVWPHRPARPRPVLLVPRAVG-KILSEKLCLLQG-FKKCL 855
Query: 93 VSMIMDREY 101
+ EY
Sbjct: 856 AEYLSQEEY 864
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.328 0.141 0.443
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,534,450
Number of Sequences: 37866
Number of extensions: 164408
Number of successful extensions: 376
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 362
Number of HSP's gapped (non-prelim): 20
length of query: 134
length of database: 18,247,518
effective HSP length: 91
effective length of query: 43
effective length of database: 14,801,712
effective search space: 636473616
effective search space used: 636473616
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.