Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: STAG2 Sequence: fasta or formatted (1268aa) NCBI GI: 112789526
Description:

stromal antigen 2 isoform a

Referenced in:

Spindle, M phase, and Meiosis

Other entries for this name:
alt mRNA [1268aa] stromal antigen 2 isoform a
alt prot [1231aa] stromal antigen 2 isoform b
alt prot [1231aa] stromal antigen 2 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7         72           2
 C cysteine            1.7         21           1
 D aspartate           6.7         85           3
 E glutamate           8.5        108           2
 F phenylalanine       4.2         53           3
 G glycine             4.6         58           3
 H histidine           2.4         30           2
 I isoleucine          5.4         69           2
 K lysine              6.6         84           2
 L leucine            10.6        135           3
 M methionine          4.5         57           2
 N asparagine          3.9         50           2
 P proline             2.9         37           2
 Q glutamine           5.4         68           3
 R arginine            5.4         68           2
 S serine              6.9         88           4
 T threonine           5.8         73           2
 V valine              5.0         63           2
 W tryptophan          0.9         11           1
 Y tyrosine            3.0         38           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   stromal antigen 2 isoform a 
STAG2                 1.000   stromal antigen 2 isoform a 
STAG2                 0.964   stromal antigen 2 isoform b 
STAG2                 0.964   stromal antigen 2 isoform b 
STAG1                 0.694   stromal antigen 1 
STAG3                 0.434   stromal antigen 3 
STAG3L1               0.067   stromal antigen 3-like 1 isoform 1 
STAG3L4               0.056   stromal antigen 3-like 4 
STAG3L2               0.055   STAG3-like 
STAG3L3               0.054   stromal antigen 3-like 3 
STAG3L1               0.039   stromal antigen 3-like 1 isoform 2 
CIT                   0.004   citron 
SYNE2                 0.004   spectrin repeat containing, nuclear envelope 2 isof...
SYNE2                 0.004   spectrin repeat containing, nuclear envelope 2 isof...
AKAP9                 0.004   A-kinase anchor protein 9 isoform 2 
AKAP9                 0.004   A-kinase anchor protein 9 isoform 3 
PHC1                  0.004   polyhomeotic 1-like 
LOC283767             0.003   golgi autoantigen, golgin subfamily a-like 
FBXO41                0.003   F-box protein 41 
LOC645202             0.003   PREDICTED: hypothetical protein LOC645202 
MCC                   0.003   mutated in colorectal cancers isoform 1 
CROCC                 0.003   ciliary rootlet coiled-coil 
MCM5                  0.003   minichromosome maintenance complex component 5 [Homo...
TRIOBP                0.003   TRIO and F-actin binding protein isoform 2 
TRIOBP                0.003   TRIO and F-actin binding protein isoform 1 
C1QTNF2               0.003   C1q and tumor necrosis factor related protein 2 [Hom...
CEP250                0.003   centrosomal protein 2 
C10orf68              0.003   chromosome 10 open reading frame 68 
MCC                   0.003   mutated in colorectal cancers isoform 2 
LOC440243             0.002   PREDICTED: Putative golgin subfamily A member 6-lik...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press