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Search of human proteins with 148226757
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|148226757 STAG3-like [Homo sapiens]
(134 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|148226757 STAG3-like [Homo sapiens] 273 2e-74
gi|148236295 stromal antigen 3-like 3 [Homo sapiens] 269 4e-73
gi|50726994 stromal antigen 3-like 1 isoform 1 [Homo sapiens] 237 2e-63
gi|57863310 stromal antigen 3 [Homo sapiens] 228 1e-60
gi|31563531 stromal antigen 2 isoform b [Homo sapiens] 162 7e-41
gi|112789530 stromal antigen 2 isoform b [Homo sapiens] 162 7e-41
gi|112789528 stromal antigen 2 isoform a [Homo sapiens] 162 7e-41
gi|112789526 stromal antigen 2 isoform a [Homo sapiens] 162 7e-41
gi|62243696 stromal antigen 1 [Homo sapiens] 162 1e-40
gi|50726989 stromal antigen 3-like 1 isoform 2 [Homo sapiens] 120 3e-28
gi|22027651 adaptor-related protein complex 1 beta 1 subunit iso... 30 0.58
gi|22027653 adaptor-related protein complex 1 beta 1 subunit iso... 30 0.58
gi|57222563 colonic and hepatic tumor over-expressed protein iso... 28 2.2
gi|57164942 colonic and hepatic tumor over-expressed protein iso... 28 2.2
gi|71773106 adaptor-related protein complex 2, beta 1 subunit is... 28 2.2
gi|4557469 adaptor-related protein complex 2, beta 1 subunit iso... 28 2.2
gi|33519450 NLR family, pyrin domain containing 9 [Homo sapiens] 27 4.9
gi|29171734 eukaryotic translation initiation factor 2C, 2 [Homo... 27 6.4
gi|52138513 SIN3 homolog B, transcription regulator [Homo sapiens] 26 8.4
>gi|148226757 STAG3-like [Homo sapiens]
Length = 134
Score = 273 bits (699), Expect = 2e-74
Identities = 134/134 (100%), Positives = 134/134 (100%)
Query: 1 MIFSMLRKLPKVTCRDVLPEIRAICIEEIGCWMQSYSTSFLTDSYLKYIGWTLHDKHREV 60
MIFSMLRKLPKVTCRDVLPEIRAICIEEIGCWMQSYSTSFLTDSYLKYIGWTLHDKHREV
Sbjct: 1 MIFSMLRKLPKVTCRDVLPEIRAICIEEIGCWMQSYSTSFLTDSYLKYIGWTLHDKHREV 60
Query: 61 RVKCVKALKGLYGNRDLTARLELFTGRFKDWMVSMIVDREYSVAVEAVRLLILILKNMEG 120
RVKCVKALKGLYGNRDLTARLELFTGRFKDWMVSMIVDREYSVAVEAVRLLILILKNMEG
Sbjct: 61 RVKCVKALKGLYGNRDLTARLELFTGRFKDWMVSMIVDREYSVAVEAVRLLILILKNMEG 120
Query: 121 VLMDVDCESVYPIV 134
VLMDVDCESVYPIV
Sbjct: 121 VLMDVDCESVYPIV 134
>gi|148236295 stromal antigen 3-like 3 [Homo sapiens]
Length = 134
Score = 269 bits (688), Expect = 4e-73
Identities = 132/134 (98%), Positives = 133/134 (99%)
Query: 1 MIFSMLRKLPKVTCRDVLPEIRAICIEEIGCWMQSYSTSFLTDSYLKYIGWTLHDKHREV 60
MIFSMLRKLPKVTCRDVLPEIRAICIEEIGCWMQSYSTSFLTDSYLKYIGWTLHDKHREV
Sbjct: 1 MIFSMLRKLPKVTCRDVLPEIRAICIEEIGCWMQSYSTSFLTDSYLKYIGWTLHDKHREV 60
Query: 61 RVKCVKALKGLYGNRDLTARLELFTGRFKDWMVSMIVDREYSVAVEAVRLLILILKNMEG 120
RVKCVKALKGLYGNRDLTARLELFTG FKDWMVSMI+DREYSVAVEAVRLLILILKNMEG
Sbjct: 61 RVKCVKALKGLYGNRDLTARLELFTGCFKDWMVSMIMDREYSVAVEAVRLLILILKNMEG 120
Query: 121 VLMDVDCESVYPIV 134
VLMDVDCESVYPIV
Sbjct: 121 VLMDVDCESVYPIV 134
>gi|50726994 stromal antigen 3-like 1 isoform 1 [Homo sapiens]
Length = 205
Score = 237 bits (604), Expect = 2e-63
Identities = 116/116 (100%), Positives = 116/116 (100%)
Query: 1 MIFSMLRKLPKVTCRDVLPEIRAICIEEIGCWMQSYSTSFLTDSYLKYIGWTLHDKHREV 60
MIFSMLRKLPKVTCRDVLPEIRAICIEEIGCWMQSYSTSFLTDSYLKYIGWTLHDKHREV
Sbjct: 1 MIFSMLRKLPKVTCRDVLPEIRAICIEEIGCWMQSYSTSFLTDSYLKYIGWTLHDKHREV 60
Query: 61 RVKCVKALKGLYGNRDLTARLELFTGRFKDWMVSMIVDREYSVAVEAVRLLILILK 116
RVKCVKALKGLYGNRDLTARLELFTGRFKDWMVSMIVDREYSVAVEAVRLLILILK
Sbjct: 61 RVKCVKALKGLYGNRDLTARLELFTGRFKDWMVSMIVDREYSVAVEAVRLLILILK 116
>gi|57863310 stromal antigen 3 [Homo sapiens]
Length = 1225
Score = 228 bits (581), Expect = 1e-60
Identities = 110/120 (91%), Positives = 114/120 (95%)
Query: 15 RDVLPEIRAICIEEIGCWMQSYSTSFLTDSYLKYIGWTLHDKHREVRVKCVKALKGLYGN 74
RDVLPEIRAICIEEIGCWMQSYSTSFLTDSYLKYIGWTLHDKHREVR+KCVKALKGLYGN
Sbjct: 314 RDVLPEIRAICIEEIGCWMQSYSTSFLTDSYLKYIGWTLHDKHREVRLKCVKALKGLYGN 373
Query: 75 RDLTARLELFTGRFKDWMVSMIVDREYSVAVEAVRLLILILKNMEGVLMDVDCESVYPIV 134
RDLT RLELFT RFKD MVSM++DREY VAVEAVRLLILILKNMEGVL D DCESVYP+V
Sbjct: 374 RDLTTRLELFTSRFKDRMVSMVMDREYDVAVEAVRLLILILKNMEGVLTDADCESVYPVV 433
>gi|31563531 stromal antigen 2 isoform b [Homo sapiens]
Length = 1231
Score = 162 bits (410), Expect = 7e-41
Identities = 75/120 (62%), Positives = 98/120 (81%)
Query: 15 RDVLPEIRAICIEEIGCWMQSYSTSFLTDSYLKYIGWTLHDKHREVRVKCVKALKGLYGN 74
RD + EIRAICIEEIG WM+ YS +FL DSYLKY+GWT+HDK EVR+KC+ AL+GLY N
Sbjct: 298 RDAIAEIRAICIEEIGIWMKMYSDAFLNDSYLKYVGWTMHDKQGEVRLKCLTALQGLYYN 357
Query: 75 RDLTARLELFTGRFKDWMVSMIVDREYSVAVEAVRLLILILKNMEGVLMDVDCESVYPIV 134
++L ++LELFT RFKD +VSM +D+EY VAV+A++LL L+L++ E VL DCE+VY +V
Sbjct: 358 KELNSKLELFTSRFKDRIVSMTLDKEYDVAVQAIKLLTLVLQSSEEVLTAEDCENVYHLV 417
>gi|112789530 stromal antigen 2 isoform b [Homo sapiens]
Length = 1231
Score = 162 bits (410), Expect = 7e-41
Identities = 75/120 (62%), Positives = 98/120 (81%)
Query: 15 RDVLPEIRAICIEEIGCWMQSYSTSFLTDSYLKYIGWTLHDKHREVRVKCVKALKGLYGN 74
RD + EIRAICIEEIG WM+ YS +FL DSYLKY+GWT+HDK EVR+KC+ AL+GLY N
Sbjct: 298 RDAIAEIRAICIEEIGIWMKMYSDAFLNDSYLKYVGWTMHDKQGEVRLKCLTALQGLYYN 357
Query: 75 RDLTARLELFTGRFKDWMVSMIVDREYSVAVEAVRLLILILKNMEGVLMDVDCESVYPIV 134
++L ++LELFT RFKD +VSM +D+EY VAV+A++LL L+L++ E VL DCE+VY +V
Sbjct: 358 KELNSKLELFTSRFKDRIVSMTLDKEYDVAVQAIKLLTLVLQSSEEVLTAEDCENVYHLV 417
>gi|112789528 stromal antigen 2 isoform a [Homo sapiens]
Length = 1268
Score = 162 bits (410), Expect = 7e-41
Identities = 75/120 (62%), Positives = 98/120 (81%)
Query: 15 RDVLPEIRAICIEEIGCWMQSYSTSFLTDSYLKYIGWTLHDKHREVRVKCVKALKGLYGN 74
RD + EIRAICIEEIG WM+ YS +FL DSYLKY+GWT+HDK EVR+KC+ AL+GLY N
Sbjct: 298 RDAIAEIRAICIEEIGIWMKMYSDAFLNDSYLKYVGWTMHDKQGEVRLKCLTALQGLYYN 357
Query: 75 RDLTARLELFTGRFKDWMVSMIVDREYSVAVEAVRLLILILKNMEGVLMDVDCESVYPIV 134
++L ++LELFT RFKD +VSM +D+EY VAV+A++LL L+L++ E VL DCE+VY +V
Sbjct: 358 KELNSKLELFTSRFKDRIVSMTLDKEYDVAVQAIKLLTLVLQSSEEVLTAEDCENVYHLV 417
>gi|112789526 stromal antigen 2 isoform a [Homo sapiens]
Length = 1268
Score = 162 bits (410), Expect = 7e-41
Identities = 75/120 (62%), Positives = 98/120 (81%)
Query: 15 RDVLPEIRAICIEEIGCWMQSYSTSFLTDSYLKYIGWTLHDKHREVRVKCVKALKGLYGN 74
RD + EIRAICIEEIG WM+ YS +FL DSYLKY+GWT+HDK EVR+KC+ AL+GLY N
Sbjct: 298 RDAIAEIRAICIEEIGIWMKMYSDAFLNDSYLKYVGWTMHDKQGEVRLKCLTALQGLYYN 357
Query: 75 RDLTARLELFTGRFKDWMVSMIVDREYSVAVEAVRLLILILKNMEGVLMDVDCESVYPIV 134
++L ++LELFT RFKD +VSM +D+EY VAV+A++LL L+L++ E VL DCE+VY +V
Sbjct: 358 KELNSKLELFTSRFKDRIVSMTLDKEYDVAVQAIKLLTLVLQSSEEVLTAEDCENVYHLV 417
>gi|62243696 stromal antigen 1 [Homo sapiens]
Length = 1258
Score = 162 bits (409), Expect = 1e-40
Identities = 77/120 (64%), Positives = 95/120 (79%)
Query: 15 RDVLPEIRAICIEEIGCWMQSYSTSFLTDSYLKYIGWTLHDKHREVRVKCVKALKGLYGN 74
RD + EIRAICIEEIG WM+ YS +FL DSYLKY+GWTLHD+ EVR+KC+KAL+ LY N
Sbjct: 301 RDAIAEIRAICIEEIGVWMKMYSDAFLNDSYLKYVGWTLHDRQGEVRLKCLKALQSLYTN 360
Query: 75 RDLTARLELFTGRFKDWMVSMIVDREYSVAVEAVRLLILILKNMEGVLMDVDCESVYPIV 134
R+L +LELFT RFKD +VSM +D+EY VAVEA+RL+ LIL E L + DCE+VY +V
Sbjct: 361 RELFPKLELFTNRFKDRIVSMTLDKEYDVAVEAIRLVTLILHGSEEALSNEDCENVYHLV 420
>gi|50726989 stromal antigen 3-like 1 isoform 2 [Homo sapiens]
Length = 151
Score = 120 bits (301), Expect = 3e-28
Identities = 60/61 (98%), Positives = 61/61 (100%)
Query: 56 KHREVRVKCVKALKGLYGNRDLTARLELFTGRFKDWMVSMIVDREYSVAVEAVRLLILIL 115
+HREVRVKCVKALKGLYGNRDLTARLELFTGRFKDWMVSMIVDREYSVAVEAVRLLILIL
Sbjct: 2 QHREVRVKCVKALKGLYGNRDLTARLELFTGRFKDWMVSMIVDREYSVAVEAVRLLILIL 61
Query: 116 K 116
K
Sbjct: 62 K 62
>gi|22027651 adaptor-related protein complex 1 beta 1 subunit
isoform a [Homo sapiens]
Length = 949
Score = 30.0 bits (66), Expect = 0.58
Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 9/118 (7%)
Query: 14 CRDVLPEIRAICIEEIGCWMQSYSTSFLTDSYLKYIGWTLHDKHREVRVKCVKALKGLYG 73
C D P IRA+ + +GC T +L + K L D+ VR + L+
Sbjct: 95 CEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRK----CLKDEDPYVRKTAAVCVAKLH- 149
Query: 74 NRDLTARLELFTGRFKDWMVSMIVDREYSVAVEAVRLLILILK-NMEGVLMDVDCESV 130
D+ A+L G F D + +I D V AV L I + + L+D++ +S+
Sbjct: 150 --DINAQLVEDQG-FLDTLKDLISDSNPMVVANAVAALSEIAESHPSSNLLDLNPQSI 204
>gi|22027653 adaptor-related protein complex 1 beta 1 subunit
isoform b [Homo sapiens]
Length = 942
Score = 30.0 bits (66), Expect = 0.58
Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 9/118 (7%)
Query: 14 CRDVLPEIRAICIEEIGCWMQSYSTSFLTDSYLKYIGWTLHDKHREVRVKCVKALKGLYG 73
C D P IRA+ + +GC T +L + K L D+ VR + L+
Sbjct: 95 CEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRK----CLKDEDPYVRKTAAVCVAKLH- 149
Query: 74 NRDLTARLELFTGRFKDWMVSMIVDREYSVAVEAVRLLILILK-NMEGVLMDVDCESV 130
D+ A+L G F D + +I D V AV L I + + L+D++ +S+
Sbjct: 150 --DINAQLVEDQG-FLDTLKDLISDSNPMVVANAVAALSEIAESHPSSNLLDLNPQSI 204
>gi|57222563 colonic and hepatic tumor over-expressed protein isoform
b [Homo sapiens]
Length = 1972
Score = 28.1 bits (61), Expect = 2.2
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 22 RAICIEEIGCWMQSYSTSFLTDS---YLKYIGWTLHDKHREVRVKCVKALKGLY 72
RA C+EE+GC ++SY + + LK I + D+ VR + + +Y
Sbjct: 1341 RAECLEELGCLVESYGMNVCQPTPGKALKEIAVHIGDRDNAVRNAALNTIVTVY 1394
>gi|57164942 colonic and hepatic tumor over-expressed protein isoform
a [Homo sapiens]
Length = 2032
Score = 28.1 bits (61), Expect = 2.2
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 22 RAICIEEIGCWMQSYSTSFLTDS---YLKYIGWTLHDKHREVRVKCVKALKGLY 72
RA C+EE+GC ++SY + + LK I + D+ VR + + +Y
Sbjct: 1341 RAECLEELGCLVESYGMNVCQPTPGKALKEIAVHIGDRDNAVRNAALNTIVTVY 1394
>gi|71773106 adaptor-related protein complex 2, beta 1 subunit
isoform a [Homo sapiens]
Length = 951
Score = 28.1 bits (61), Expect = 2.2
Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 14 CRDVLPEIRAICIEEIGCWMQSYSTSFLTDSYLKYIGWTLHDKHREVRVKCVKALKGLYG 73
C D P IRA+ + +GC T +L + K L D+ VR + L+
Sbjct: 95 CEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRK----CLKDEDPYVRKTAAVCVAKLH- 149
Query: 74 NRDLTARLELFTGRFKDWMVSMIVDREYSVAVEAVRLL 111
D+ A++ G F D + +I D V AV L
Sbjct: 150 --DINAQMVEDQG-FLDSLRDLIADSNPMVVANAVAAL 184
>gi|4557469 adaptor-related protein complex 2, beta 1 subunit
isoform b [Homo sapiens]
Length = 937
Score = 28.1 bits (61), Expect = 2.2
Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 14 CRDVLPEIRAICIEEIGCWMQSYSTSFLTDSYLKYIGWTLHDKHREVRVKCVKALKGLYG 73
C D P IRA+ + +GC T +L + K L D+ VR + L+
Sbjct: 95 CEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRK----CLKDEDPYVRKTAAVCVAKLH- 149
Query: 74 NRDLTARLELFTGRFKDWMVSMIVDREYSVAVEAVRLL 111
D+ A++ G F D + +I D V AV L
Sbjct: 150 --DINAQMVEDQG-FLDSLRDLIADSNPMVVANAVAAL 184
>gi|33519450 NLR family, pyrin domain containing 9 [Homo sapiens]
Length = 991
Score = 26.9 bits (58), Expect = 4.9
Identities = 15/64 (23%), Positives = 30/64 (46%)
Query: 26 IEEIGCWMQSYSTSFLTDSYLKYIGWTLHDKHREVRVKCVKALKGLYGNRDLTARLELFT 85
+ ++G +M ST + G+ L ++ +C+++L +R+ A ELF
Sbjct: 488 LTQVGIFMFGISTEEIVSMLETSFGFPLSKDLKQEITQCLESLSQCEADREAIAFQELFI 547
Query: 86 GRFK 89
G F+
Sbjct: 548 GLFE 551
>gi|29171734 eukaryotic translation initiation factor 2C, 2 [Homo
sapiens]
Length = 859
Score = 26.6 bits (57), Expect = 6.4
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 27 EEIGCWMQSYSTSFLTDSYLKYIGWTLHDKHREVRVKCVKALKGLYGNRD 76
EEI M+S SF TD Y++ G + D+ +V + ++ LYG R+
Sbjct: 377 EEISKLMRS--ASFNTDPYVREFGIMVKDEMTDVTGRVLQPPSILYGGRN 424
>gi|52138513 SIN3 homolog B, transcription regulator [Homo sapiens]
Length = 1162
Score = 26.2 bits (56), Expect = 8.4
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 31 CWMQSYSTSFLTDSYLKYIGWT 52
CW+ YS L D+++ + W+
Sbjct: 446 CWIPGYSAGVLNDTWVSFPSWS 467
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.328 0.141 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,485,629
Number of Sequences: 37866
Number of extensions: 165386
Number of successful extensions: 413
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 399
Number of HSP's gapped (non-prelim): 19
length of query: 134
length of database: 18,247,518
effective HSP length: 91
effective length of query: 43
effective length of database: 14,801,712
effective search space: 636473616
effective search space used: 636473616
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.