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Search of human proteins with 14790128
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|14790128 caspase 9 isoform beta preproprotein [Homo sapiens]
(266 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|14790128 caspase 9 isoform beta preproprotein [Homo sapiens] 536 e-153
gi|14790124 caspase 9 isoform alpha preproprotein [Homo sapiens] 275 2e-74
gi|14790115 caspase 3 preproprotein [Homo sapiens] 58 1e-08
gi|14790119 caspase 3 preproprotein [Homo sapiens] 58 1e-08
gi|47078272 caspase 10 isoform d preproprotein [Homo sapiens] 55 8e-08
gi|47078267 caspase 10 isoform a preproprotein [Homo sapiens] 55 8e-08
gi|15718698 caspase 7 isoform delta [Homo sapiens] 55 8e-08
gi|15718700 caspase 7 isoform alpha [Homo sapiens] 55 8e-08
gi|4502581 caspase 7 isoform alpha precursor [Homo sapiens] 55 8e-08
gi|122056476 caspase 8 isoform G precursor [Homo sapiens] 46 4e-05
gi|122056474 caspase 8 isoform C precursor [Homo sapiens] 46 4e-05
gi|15718708 caspase 8 isoform C precursor [Homo sapiens] 46 4e-05
gi|15718706 caspase 8 isoform B precursor [Homo sapiens] 46 4e-05
gi|15718704 caspase 8 isoform A precursor [Homo sapiens] 46 4e-05
gi|14916483 caspase 6 isoform alpha preproprotein [Homo sapiens] 46 4e-05
gi|14916485 caspase 6 isoform beta [Homo sapiens] 46 4e-05
gi|39995059 caspase 2 isoform 1 preproprotein [Homo sapiens] 43 2e-04
gi|47078269 caspase 10 isoform b preproprotein [Homo sapiens] 41 0.001
gi|6912286 caspase 14 precursor [Homo sapiens] 40 0.002
gi|15431330 caspase 1 isoform gamma precursor [Homo sapiens] 35 0.068
gi|15431328 caspase 1 isoform alpha precursor [Homo sapiens] 35 0.068
gi|4502573 caspase 1 isoform beta precursor [Homo sapiens] 35 0.068
gi|51871374 UTP14, U3 small nucleolar ribonucleoprotein, homolog... 35 0.089
gi|15451910 caspase 4 isoform gamma precursor [Homo sapiens] 33 0.20
gi|4502577 caspase 4 isoform alpha precursor [Homo sapiens] 33 0.20
gi|21264343 scaffold attachment factor B [Homo sapiens] 32 0.44
gi|7661936 scaffold attachment factor B2 [Homo sapiens] 32 0.44
gi|217330658 hypothetical protein LOC9812 [Homo sapiens] 31 0.98
gi|217330656 hypothetical protein LOC9812 [Homo sapiens] 31 0.98
gi|50312666 ubiquitin specific peptidase 25 [Homo sapiens] 31 1.3
>gi|14790128 caspase 9 isoform beta preproprotein [Homo sapiens]
Length = 266
Score = 536 bits (1381), Expect = e-153
Identities = 266/266 (100%), Positives = 266/266 (100%)
Query: 1 MDEADRRLLRRCRLRLVEELQVDQLWDALLSRELFRPHMIEDIQRAGSGSRRDQARQLII 60
MDEADRRLLRRCRLRLVEELQVDQLWDALLSRELFRPHMIEDIQRAGSGSRRDQARQLII
Sbjct: 1 MDEADRRLLRRCRLRLVEELQVDQLWDALLSRELFRPHMIEDIQRAGSGSRRDQARQLII 60
Query: 61 DLETRGSQALPLFISCLEDTGQDMLASFLRTNRQAAKLSKPTLENLTPVVLRPEIRKPEV 120
DLETRGSQALPLFISCLEDTGQDMLASFLRTNRQAAKLSKPTLENLTPVVLRPEIRKPEV
Sbjct: 61 DLETRGSQALPLFISCLEDTGQDMLASFLRTNRQAAKLSKPTLENLTPVVLRPEIRKPEV 120
Query: 121 LRPETPRPVDIGSGGFGDVEQKDHGFEVASTSPEDESPGSNPEPDATPFQEGLRTFDQLD 180
LRPETPRPVDIGSGGFGDVEQKDHGFEVASTSPEDESPGSNPEPDATPFQEGLRTFDQLD
Sbjct: 121 LRPETPRPVDIGSGGFGDVEQKDHGFEVASTSPEDESPGSNPEPDATPFQEGLRTFDQLD 180
Query: 181 AISSLPTPSDIFVSYSTFPGFVSWRDPKSGSWYVETLDDIFEQWAHSEDLQSLLLRVANA 240
AISSLPTPSDIFVSYSTFPGFVSWRDPKSGSWYVETLDDIFEQWAHSEDLQSLLLRVANA
Sbjct: 181 AISSLPTPSDIFVSYSTFPGFVSWRDPKSGSWYVETLDDIFEQWAHSEDLQSLLLRVANA 240
Query: 241 VSVKGIYKQMPGCFNFLRKKLFFKTS 266
VSVKGIYKQMPGCFNFLRKKLFFKTS
Sbjct: 241 VSVKGIYKQMPGCFNFLRKKLFFKTS 266
>gi|14790124 caspase 9 isoform alpha preproprotein [Homo sapiens]
Length = 416
Score = 275 bits (704), Expect = 2e-74
Identities = 139/139 (100%), Positives = 139/139 (100%)
Query: 1 MDEADRRLLRRCRLRLVEELQVDQLWDALLSRELFRPHMIEDIQRAGSGSRRDQARQLII 60
MDEADRRLLRRCRLRLVEELQVDQLWDALLSRELFRPHMIEDIQRAGSGSRRDQARQLII
Sbjct: 1 MDEADRRLLRRCRLRLVEELQVDQLWDALLSRELFRPHMIEDIQRAGSGSRRDQARQLII 60
Query: 61 DLETRGSQALPLFISCLEDTGQDMLASFLRTNRQAAKLSKPTLENLTPVVLRPEIRKPEV 120
DLETRGSQALPLFISCLEDTGQDMLASFLRTNRQAAKLSKPTLENLTPVVLRPEIRKPEV
Sbjct: 61 DLETRGSQALPLFISCLEDTGQDMLASFLRTNRQAAKLSKPTLENLTPVVLRPEIRKPEV 120
Query: 121 LRPETPRPVDIGSGGFGDV 139
LRPETPRPVDIGSGGFGDV
Sbjct: 121 LRPETPRPVDIGSGGFGDV 139
Score = 265 bits (677), Expect = 3e-71
Identities = 127/127 (100%), Positives = 127/127 (100%)
Query: 140 EQKDHGFEVASTSPEDESPGSNPEPDATPFQEGLRTFDQLDAISSLPTPSDIFVSYSTFP 199
EQKDHGFEVASTSPEDESPGSNPEPDATPFQEGLRTFDQLDAISSLPTPSDIFVSYSTFP
Sbjct: 290 EQKDHGFEVASTSPEDESPGSNPEPDATPFQEGLRTFDQLDAISSLPTPSDIFVSYSTFP 349
Query: 200 GFVSWRDPKSGSWYVETLDDIFEQWAHSEDLQSLLLRVANAVSVKGIYKQMPGCFNFLRK 259
GFVSWRDPKSGSWYVETLDDIFEQWAHSEDLQSLLLRVANAVSVKGIYKQMPGCFNFLRK
Sbjct: 350 GFVSWRDPKSGSWYVETLDDIFEQWAHSEDLQSLLLRVANAVSVKGIYKQMPGCFNFLRK 409
Query: 260 KLFFKTS 266
KLFFKTS
Sbjct: 410 KLFFKTS 416
>gi|14790115 caspase 3 preproprotein [Homo sapiens]
Length = 277
Score = 57.8 bits (138), Expect = 1e-08
Identities = 32/105 (30%), Positives = 54/105 (51%), Gaps = 13/105 (12%)
Query: 172 GLRTFDQLD---AISSLPTPSDIFVSYSTFPGFVSWRDPKSGSWYVETLDDIFEQWAHSE 228
G+ T +D A +P +D +YST PG+ SWR+ K GSW++++L + +Q+A
Sbjct: 171 GIETDSGVDDDMACHKIPVEADFLYAYSTAPGYYSWRNSKDGSWFIQSLCAMLKQYADKL 230
Query: 229 DLQSLLLRVANAVSVK----------GIYKQMPGCFNFLRKKLFF 263
+ +L RV V+ + KQ+P + L K+L+F
Sbjct: 231 EFMHILTRVNRKVATEFESFSFDATFHAKKQIPCIVSMLTKELYF 275
>gi|14790119 caspase 3 preproprotein [Homo sapiens]
Length = 277
Score = 57.8 bits (138), Expect = 1e-08
Identities = 32/105 (30%), Positives = 54/105 (51%), Gaps = 13/105 (12%)
Query: 172 GLRTFDQLD---AISSLPTPSDIFVSYSTFPGFVSWRDPKSGSWYVETLDDIFEQWAHSE 228
G+ T +D A +P +D +YST PG+ SWR+ K GSW++++L + +Q+A
Sbjct: 171 GIETDSGVDDDMACHKIPVEADFLYAYSTAPGYYSWRNSKDGSWFIQSLCAMLKQYADKL 230
Query: 229 DLQSLLLRVANAVSVK----------GIYKQMPGCFNFLRKKLFF 263
+ +L RV V+ + KQ+P + L K+L+F
Sbjct: 231 EFMHILTRVNRKVATEFESFSFDATFHAKKQIPCIVSMLTKELYF 275
>gi|47078272 caspase 10 isoform d preproprotein [Homo sapiens]
Length = 522
Score = 54.7 bits (130), Expect = 8e-08
Identities = 38/113 (33%), Positives = 57/113 (50%), Gaps = 17/113 (15%)
Query: 156 ESPGSNPEPDATPFQEGLRTFDQLDAISSLPTPSDIFVSYSTFPGFVSWRDPKSGSWYVE 215
E+ NPE T Q+ S+P +D + +T PG+VS+R + GSWY++
Sbjct: 413 EADALNPEQAPTSLQD------------SIPAEADFLLGLATVPGYVSFRHVEEGSWYIQ 460
Query: 216 TLDDIFEQWA-HSEDLQSLLLRVANAVS----VKGIYKQMPGCFNFLRKKLFF 263
+L + ++ ED+ S+L V + VS +G KQMP LRKKL F
Sbjct: 461 SLCNHLKKLVPRHEDILSILTAVNDDVSRRVDKQGTKKQMPQPAFTLRKKLVF 513
>gi|47078267 caspase 10 isoform a preproprotein [Homo sapiens]
Length = 479
Score = 54.7 bits (130), Expect = 8e-08
Identities = 38/113 (33%), Positives = 57/113 (50%), Gaps = 17/113 (15%)
Query: 156 ESPGSNPEPDATPFQEGLRTFDQLDAISSLPTPSDIFVSYSTFPGFVSWRDPKSGSWYVE 215
E+ NPE T Q+ S+P +D + +T PG+VS+R + GSWY++
Sbjct: 370 EADALNPEQAPTSLQD------------SIPAEADFLLGLATVPGYVSFRHVEEGSWYIQ 417
Query: 216 TLDDIFEQWA-HSEDLQSLLLRVANAVS----VKGIYKQMPGCFNFLRKKLFF 263
+L + ++ ED+ S+L V + VS +G KQMP LRKKL F
Sbjct: 418 SLCNHLKKLVPRHEDILSILTAVNDDVSRRVDKQGTKKQMPQPAFTLRKKLVF 470
>gi|15718698 caspase 7 isoform delta [Homo sapiens]
Length = 336
Score = 54.7 bits (130), Expect = 8e-08
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 10/89 (11%)
Query: 185 LPTPSDIFVSYSTFPGFVSWRDPKSGSWYVETLDDIFEQWAHSEDLQSLLLRVANAVSVK 244
+P +D +YST PG+ SWR P GSW+V+ L I E+ ++ +L RV + V+
Sbjct: 246 IPVEADFLFAYSTVPGYYSWRSPGRGSWFVQALCSILEEHGKDLEIMQILTRVNDRVARH 305
Query: 245 ----------GIYKQMPGCFNFLRKKLFF 263
KQ+P + L K+L+F
Sbjct: 306 FESQSDDPHFHEKKQIPCVVSMLTKELYF 334
>gi|15718700 caspase 7 isoform alpha [Homo sapiens]
Length = 303
Score = 54.7 bits (130), Expect = 8e-08
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 10/89 (11%)
Query: 185 LPTPSDIFVSYSTFPGFVSWRDPKSGSWYVETLDDIFEQWAHSEDLQSLLLRVANAVSVK 244
+P +D +YST PG+ SWR P GSW+V+ L I E+ ++ +L RV + V+
Sbjct: 213 IPVEADFLFAYSTVPGYYSWRSPGRGSWFVQALCSILEEHGKDLEIMQILTRVNDRVARH 272
Query: 245 ----------GIYKQMPGCFNFLRKKLFF 263
KQ+P + L K+L+F
Sbjct: 273 FESQSDDPHFHEKKQIPCVVSMLTKELYF 301
>gi|4502581 caspase 7 isoform alpha precursor [Homo sapiens]
Length = 303
Score = 54.7 bits (130), Expect = 8e-08
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 10/89 (11%)
Query: 185 LPTPSDIFVSYSTFPGFVSWRDPKSGSWYVETLDDIFEQWAHSEDLQSLLLRVANAVSVK 244
+P +D +YST PG+ SWR P GSW+V+ L I E+ ++ +L RV + V+
Sbjct: 213 IPVEADFLFAYSTVPGYYSWRSPGRGSWFVQALCSILEEHGKDLEIMQILTRVNDRVARH 272
Query: 245 ----------GIYKQMPGCFNFLRKKLFF 263
KQ+P + L K+L+F
Sbjct: 273 FESQSDDPHFHEKKQIPCVVSMLTKELYF 301
>gi|122056476 caspase 8 isoform G precursor [Homo sapiens]
Length = 538
Score = 45.8 bits (107), Expect = 4e-05
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 185 LPTPSDIFVSYSTFPGFVSWRDPKSGSWYVETL-DDIFEQWAHSEDLQSLL----LRVAN 239
+P +D + +T VS+R+P G+WY+++L + E+ +D+ ++L V+N
Sbjct: 452 IPDEADFLLGMATVNNCVSYRNPAEGTWYIQSLCQSLRERCPRGDDILTILTEVNYEVSN 511
Query: 240 AVSVKGIYKQMPGCFNFLRKKLFF 263
K + KQMP LRKKL F
Sbjct: 512 KDDKKNMGKQMPQPTFTLRKKLVF 535
>gi|122056474 caspase 8 isoform C precursor [Homo sapiens]
Length = 464
Score = 45.8 bits (107), Expect = 4e-05
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 185 LPTPSDIFVSYSTFPGFVSWRDPKSGSWYVETL-DDIFEQWAHSEDLQSLL----LRVAN 239
+P +D + +T VS+R+P G+WY+++L + E+ +D+ ++L V+N
Sbjct: 378 IPDEADFLLGMATVNNCVSYRNPAEGTWYIQSLCQSLRERCPRGDDILTILTEVNYEVSN 437
Query: 240 AVSVKGIYKQMPGCFNFLRKKLFF 263
K + KQMP LRKKL F
Sbjct: 438 KDDKKNMGKQMPQPTFTLRKKLVF 461
>gi|15718708 caspase 8 isoform C precursor [Homo sapiens]
Length = 464
Score = 45.8 bits (107), Expect = 4e-05
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 185 LPTPSDIFVSYSTFPGFVSWRDPKSGSWYVETL-DDIFEQWAHSEDLQSLL----LRVAN 239
+P +D + +T VS+R+P G+WY+++L + E+ +D+ ++L V+N
Sbjct: 378 IPDEADFLLGMATVNNCVSYRNPAEGTWYIQSLCQSLRERCPRGDDILTILTEVNYEVSN 437
Query: 240 AVSVKGIYKQMPGCFNFLRKKLFF 263
K + KQMP LRKKL F
Sbjct: 438 KDDKKNMGKQMPQPTFTLRKKLVF 461
>gi|15718706 caspase 8 isoform B precursor [Homo sapiens]
Length = 479
Score = 45.8 bits (107), Expect = 4e-05
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 185 LPTPSDIFVSYSTFPGFVSWRDPKSGSWYVETL-DDIFEQWAHSEDLQSLL----LRVAN 239
+P +D + +T VS+R+P G+WY+++L + E+ +D+ ++L V+N
Sbjct: 393 IPDEADFLLGMATVNNCVSYRNPAEGTWYIQSLCQSLRERCPRGDDILTILTEVNYEVSN 452
Query: 240 AVSVKGIYKQMPGCFNFLRKKLFF 263
K + KQMP LRKKL F
Sbjct: 453 KDDKKNMGKQMPQPTFTLRKKLVF 476
>gi|15718704 caspase 8 isoform A precursor [Homo sapiens]
Length = 496
Score = 45.8 bits (107), Expect = 4e-05
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 185 LPTPSDIFVSYSTFPGFVSWRDPKSGSWYVETL-DDIFEQWAHSEDLQSLL----LRVAN 239
+P +D + +T VS+R+P G+WY+++L + E+ +D+ ++L V+N
Sbjct: 410 IPDEADFLLGMATVNNCVSYRNPAEGTWYIQSLCQSLRERCPRGDDILTILTEVNYEVSN 469
Query: 240 AVSVKGIYKQMPGCFNFLRKKLFF 263
K + KQMP LRKKL F
Sbjct: 470 KDDKKNMGKQMPQPTFTLRKKLVF 493
>gi|14916483 caspase 6 isoform alpha preproprotein [Homo sapiens]
Length = 293
Score = 45.8 bits (107), Expect = 4e-05
Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 12/98 (12%)
Query: 178 QLDAIS--SLPTPSDIFVSYSTFPGFVSWRDPKSGSWYVETLDDIFEQWAHSEDLQSLLL 235
++DA S +LP +D + YS G+ S R+ +GSWY++ L ++ ++ S + LL
Sbjct: 191 EVDAASVYTLPAGADFLMCYSVAEGYYSHRETVNGSWYIQDLCEMLGKYGSSLEFTELLT 250
Query: 236 RVANAVSVKGI----------YKQMPGCFNFLRKKLFF 263
V VS + + KQ+P + L KKL F
Sbjct: 251 LVNRKVSQRRVDFCKDPSAIGKKQVPCFASMLTKKLHF 288
>gi|14916485 caspase 6 isoform beta [Homo sapiens]
Length = 204
Score = 45.8 bits (107), Expect = 4e-05
Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 12/98 (12%)
Query: 178 QLDAIS--SLPTPSDIFVSYSTFPGFVSWRDPKSGSWYVETLDDIFEQWAHSEDLQSLLL 235
++DA S +LP +D + YS G+ S R+ +GSWY++ L ++ ++ S + LL
Sbjct: 102 EVDAASVYTLPAGADFLMCYSVAEGYYSHRETVNGSWYIQDLCEMLGKYGSSLEFTELLT 161
Query: 236 RVANAVSVKGI----------YKQMPGCFNFLRKKLFF 263
V VS + + KQ+P + L KKL F
Sbjct: 162 LVNRKVSQRRVDFCKDPSAIGKKQVPCFASMLTKKLHF 199
>gi|39995059 caspase 2 isoform 1 preproprotein [Homo sapiens]
Length = 452
Score = 43.1 bits (100), Expect = 2e-04
Identities = 19/53 (35%), Positives = 30/53 (56%)
Query: 185 LPTPSDIFVSYSTFPGFVSWRDPKSGSWYVETLDDIFEQWAHSEDLQSLLLRV 237
LPT SD+ Y+ G + R+ K GSWY+E L +F + A + +L++V
Sbjct: 358 LPTRSDMICGYACLKGTAAMRNTKRGSWYIEALAQVFSERACDMHVADMLVKV 410
>gi|47078269 caspase 10 isoform b preproprotein [Homo sapiens]
Length = 521
Score = 41.2 bits (95), Expect = 0.001
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 12/62 (19%)
Query: 156 ESPGSNPEPDATPFQEGLRTFDQLDAISSLPTPSDIFVSYSTFPGFVSWRDPKSGSWYVE 215
E+ NPE T Q+ S+P +D + +T PG+VS+R + GSWY++
Sbjct: 413 EADALNPEQAPTSLQD------------SIPAEADFLLGLATVPGYVSFRHVEEGSWYIQ 460
Query: 216 TL 217
+L
Sbjct: 461 SL 462
>gi|6912286 caspase 14 precursor [Homo sapiens]
Length = 242
Score = 40.4 bits (93), Expect = 0.002
Identities = 28/89 (31%), Positives = 50/89 (56%), Gaps = 4/89 (4%)
Query: 180 DAISSLPTPSDIFVSYSTFPGFVSWRDPKSGSWYVETLDDIF-EQWAH-SEDLQSLLLRV 237
D+ ++PT +D YST G++++R + GS +++TL D+F ++ H E L + R+
Sbjct: 154 DSPQTIPTYTDALHVYSTVEGYIAYRHDQKGSCFIQTLVDVFTKRKGHILELLTEVTRRM 213
Query: 238 ANAVSVK--GIYKQMPGCFNFLRKKLFFK 264
A A V+ K P + LRK+L+ +
Sbjct: 214 AEAELVQEGKARKTNPEIQSTLRKRLYLQ 242
>gi|15431330 caspase 1 isoform gamma precursor [Homo sapiens]
Length = 311
Score = 35.0 bits (79), Expect = 0.068
Identities = 21/72 (29%), Positives = 33/72 (45%)
Query: 180 DAISSLPTPSDIFVSYSTFPGFVSWRDPKSGSWYVETLDDIFEQWAHSEDLQSLLLRVAN 239
DAI D S+ P VSWR P GS ++ L + +++A S D++ + +V
Sbjct: 223 DAIKKAHIEKDFIAFCSSTPDNVSWRHPTMGSVFIGRLIEHMQEYACSCDVEEIFRKVRF 282
Query: 240 AVSVKGIYKQMP 251
+ QMP
Sbjct: 283 SFEQPDGRAQMP 294
>gi|15431328 caspase 1 isoform alpha precursor [Homo sapiens]
Length = 404
Score = 35.0 bits (79), Expect = 0.068
Identities = 21/72 (29%), Positives = 33/72 (45%)
Query: 180 DAISSLPTPSDIFVSYSTFPGFVSWRDPKSGSWYVETLDDIFEQWAHSEDLQSLLLRVAN 239
DAI D S+ P VSWR P GS ++ L + +++A S D++ + +V
Sbjct: 316 DAIKKAHIEKDFIAFCSSTPDNVSWRHPTMGSVFIGRLIEHMQEYACSCDVEEIFRKVRF 375
Query: 240 AVSVKGIYKQMP 251
+ QMP
Sbjct: 376 SFEQPDGRAQMP 387
>gi|4502573 caspase 1 isoform beta precursor [Homo sapiens]
Length = 383
Score = 35.0 bits (79), Expect = 0.068
Identities = 21/72 (29%), Positives = 33/72 (45%)
Query: 180 DAISSLPTPSDIFVSYSTFPGFVSWRDPKSGSWYVETLDDIFEQWAHSEDLQSLLLRVAN 239
DAI D S+ P VSWR P GS ++ L + +++A S D++ + +V
Sbjct: 295 DAIKKAHIEKDFIAFCSSTPDNVSWRHPTMGSVFIGRLIEHMQEYACSCDVEEIFRKVRF 354
Query: 240 AVSVKGIYKQMP 251
+ QMP
Sbjct: 355 SFEQPDGRAQMP 366
>gi|51871374 UTP14, U3 small nucleolar ribonucleoprotein, homolog C
[Homo sapiens]
Length = 766
Score = 34.7 bits (78), Expect = 0.089
Identities = 38/135 (28%), Positives = 64/135 (47%), Gaps = 30/135 (22%)
Query: 2 DEADRRLLRRC-RLRLVEELQVDQLWDALLSRELFRPHMIEDIQRAGSGSRRDQA----- 55
+EA+ LL+R R++ +EEL+ D ++EL RP ++E Q + + R A
Sbjct: 493 EEAEPLLLQRSERVQTLEELEELGKEDCFQNKELPRP-VLEGQQSERTPNNRPDAPKEKK 551
Query: 56 -RQLIIDLE--------TRGSQALPLFISCLED--------------TGQDMLASFLRTN 92
++ +I+L+ + S A+P I LED G D++ FL+
Sbjct: 552 EKEQLINLQNFLTTQSPSVRSLAVPTIIEELEDEEERDQRQMIKEAFAGDDVIRDFLKEK 611
Query: 93 RQAAKLSKPTLENLT 107
R+A + SKP +LT
Sbjct: 612 REAVEASKPKDVDLT 626
>gi|15451910 caspase 4 isoform gamma precursor [Homo sapiens]
Length = 321
Score = 33.5 bits (75), Expect = 0.20
Identities = 19/72 (26%), Positives = 31/72 (43%)
Query: 180 DAISSLPTPSDIFVSYSTFPGFVSWRDPKSGSWYVETLDDIFEQWAHSEDLQSLLLRVAN 239
DA+ D S+ P VSWRD GS ++ L F++++ L+ + +V
Sbjct: 233 DAVYKTHVEKDFIAFCSSTPHNVSWRDSTMGSIFITQLITCFQKYSWCCHLEEVFRKVQQ 292
Query: 240 AVSVKGIYKQMP 251
+ QMP
Sbjct: 293 SFETPRAKAQMP 304
>gi|4502577 caspase 4 isoform alpha precursor [Homo sapiens]
Length = 377
Score = 33.5 bits (75), Expect = 0.20
Identities = 19/72 (26%), Positives = 31/72 (43%)
Query: 180 DAISSLPTPSDIFVSYSTFPGFVSWRDPKSGSWYVETLDDIFEQWAHSEDLQSLLLRVAN 239
DA+ D S+ P VSWRD GS ++ L F++++ L+ + +V
Sbjct: 289 DAVYKTHVEKDFIAFCSSTPHNVSWRDSTMGSIFITQLITCFQKYSWCCHLEEVFRKVQQ 348
Query: 240 AVSVKGIYKQMP 251
+ QMP
Sbjct: 349 SFETPRAKAQMP 360
>gi|21264343 scaffold attachment factor B [Homo sapiens]
Length = 915
Score = 32.3 bits (72), Expect = 0.44
Identities = 35/117 (29%), Positives = 50/117 (42%), Gaps = 12/117 (10%)
Query: 72 LFISCLEDTGQDMLASFLRTNRQAAKLSKPTLENLTPVVLRPEIRKPEVLRPETPRPVDI 131
LF S + G LAS + Q++K ++L VV R +P PV +
Sbjct: 260 LFDSAHPEEGDLDLASESTAHAQSSKA-----DSLLAVVKREPAEQPGDGERTDCEPVGL 314
Query: 132 GSGGFGDVEQKDHGFEVASTSPED--ESPGSNPEPDATPFQEGLRTFDQLDAISSLP 186
VEQ E+A S E+ E+P P P+A +E R FD DA + +P
Sbjct: 315 EPA----VEQSSAASELAEASSEELAEAPTEAPSPEARDSKEDGRKFD-FDACNEVP 366
>gi|7661936 scaffold attachment factor B2 [Homo sapiens]
Length = 953
Score = 32.3 bits (72), Expect = 0.44
Identities = 35/117 (29%), Positives = 50/117 (42%), Gaps = 12/117 (10%)
Query: 72 LFISCLEDTGQDMLASFLRTNRQAAKLSKPTLENLTPVVLRPEIRKPEVLRPETPRPVDI 131
LF S + G LAS + Q++K ++L VV R +P PV +
Sbjct: 259 LFDSAHPEEGDLDLASESTAHAQSSKA-----DSLLAVVKREPAEQPGDGERTDCEPVGL 313
Query: 132 GSGGFGDVEQKDHGFEVASTSPED--ESPGSNPEPDATPFQEGLRTFDQLDAISSLP 186
VEQ E+A S E+ E+P P P+A +E R FD DA + +P
Sbjct: 314 EPA----VEQSSAASELAEASSEELAEAPTEAPSPEARDSKEDGRKFD-FDACNEVP 365
>gi|217330658 hypothetical protein LOC9812 [Homo sapiens]
Length = 515
Score = 31.2 bits (69), Expect = 0.98
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Query: 127 RPVDIGSGGFGDVEQKDHGFEVASTSPEDESPGSNPEPDATPFQEGLRTFDQLDAISSLP 186
RP D G GD GF AS+S E E+ + P+P Q+ +T +A++S+
Sbjct: 183 RPQDPSEEGPGDF-----GFLHASSSIESEAKPAQPQPTGEKEQDKSKTLSLEEAVTSIQ 237
Query: 187 TPSDIFVSYSTFPGFVSWRDPKSG 210
+ VS + F+ + KSG
Sbjct: 238 QLFQLSVSIAF--NFLGTENMKSG 259
>gi|217330656 hypothetical protein LOC9812 [Homo sapiens]
Length = 515
Score = 31.2 bits (69), Expect = 0.98
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Query: 127 RPVDIGSGGFGDVEQKDHGFEVASTSPEDESPGSNPEPDATPFQEGLRTFDQLDAISSLP 186
RP D G GD GF AS+S E E+ + P+P Q+ +T +A++S+
Sbjct: 183 RPQDPSEEGPGDF-----GFLHASSSIESEAKPAQPQPTGEKEQDKSKTLSLEEAVTSIQ 237
Query: 187 TPSDIFVSYSTFPGFVSWRDPKSG 210
+ VS + F+ + KSG
Sbjct: 238 QLFQLSVSIAF--NFLGTENMKSG 259
>gi|50312666 ubiquitin specific peptidase 25 [Homo sapiens]
Length = 1055
Score = 30.8 bits (68), Expect = 1.3
Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 16/113 (14%)
Query: 85 LASFLRTNRQAAKLSKPTLENLTPVVLRPEIRKPEVLRPETPRPVDIGSGG--FGDVEQK 142
L ++ NR+ ++ + ++ L + VL+ R + GSG F V+
Sbjct: 401 LDRYMHRNREITRIKREEIKRLKDYLT--------VLQQRLERYLSYGSGPKRFPLVDVL 452
Query: 143 DHGFEVAS-----TSPEDESPGSNPEPDATPFQEGLRTFDQLDAISS-LPTPS 189
+ E AS TSP D+ S+P + P Q T +Q A+SS LP+ S
Sbjct: 453 QYALEFASSKPVCTSPVDDIDASSPPSGSIPSQTLPSTTEQQGALSSELPSTS 505
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.136 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,183,498
Number of Sequences: 37866
Number of extensions: 578327
Number of successful extensions: 1974
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 1910
Number of HSP's gapped (non-prelim): 78
length of query: 266
length of database: 18,247,518
effective HSP length: 100
effective length of query: 166
effective length of database: 14,460,918
effective search space: 2400512388
effective search space used: 2400512388
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.