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Search of human proteins with 145312246
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|145312246 tudor and KH domain containing isoform b [Homo
sapiens]
(516 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|145312246 tudor and KH domain containing isoform b [Homo sapi... 1027 0.0
gi|145312259 tudor and KH domain containing isoform a [Homo sapi... 1005 0.0
gi|145312270 tudor and KH domain containing isoform a [Homo sapi... 1005 0.0
gi|145312256 tudor and KH domain containing isoform a [Homo sapi... 1005 0.0
gi|38505161 tudor domain containing 1 [Homo sapiens] 89 7e-18
gi|40255178 tudor domain containing 5 [Homo sapiens] 84 4e-16
gi|112293287 tudor domain containing 7 [Homo sapiens] 82 2e-15
gi|94421471 ring finger protein 17 [Homo sapiens] 70 6e-12
gi|58197558 tudor domain containing 6 [Homo sapiens] 65 2e-10
gi|4502015 A-kinase anchor protein 1 precursor [Homo sapiens] 64 3e-10
gi|169163653 PREDICTED: similar to tudor domain containing 1 [Ho... 60 6e-09
gi|169164192 PREDICTED: similar to tudor domain containing 1 [Ho... 60 6e-09
gi|169163210 PREDICTED: similar to tudor domain containing 1 [Ho... 60 6e-09
gi|166851804 tudor domain containing 9 [Homo sapiens] 57 4e-08
gi|77404397 staphylococcal nuclease domain containing 1 [Homo sa... 49 1e-05
gi|161016765 tudor domain containing 12 [Homo sapiens] 46 7e-05
gi|194306633 poly(rC) binding protein 3 isoform 2 [Homo sapiens] 44 4e-04
gi|194306631 poly(rC) binding protein 3 isoform 1 [Homo sapiens] 44 4e-04
gi|154355000 KH-type splicing regulatory protein [Homo sapiens] 42 0.002
gi|9966803 poly(rC) binding protein 4 isoform a [Homo sapiens] 41 0.003
gi|14670373 poly(rC) binding protein 4 isoform c [Homo sapiens] 41 0.003
gi|14670369 poly(rC) binding protein 4 isoform c [Homo sapiens] 41 0.003
gi|38683807 ankyrin repeat domain protein 17 isoform a [Homo sap... 41 0.003
gi|38683816 ankyrin repeat domain protein 17 isoform b [Homo sap... 41 0.003
gi|17402900 far upstream element-binding protein [Homo sapiens] 40 0.004
gi|56118219 insulin-like growth factor 2 mRNA binding protein 2 ... 40 0.007
gi|64085377 insulin-like growth factor 2 mRNA binding protein 2 ... 40 0.007
gi|222352151 poly(rC) binding protein 1 [Homo sapiens] 39 0.009
gi|14165439 heterogeneous nuclear ribonucleoprotein K isoform a ... 39 0.009
gi|14165435 heterogeneous nuclear ribonucleoprotein K isoform b ... 39 0.009
>gi|145312246 tudor and KH domain containing isoform b [Homo
sapiens]
Length = 516
Score = 1027 bits (2655), Expect = 0.0
Identities = 516/516 (100%), Positives = 516/516 (100%)
Query: 1 MSTERTSWTSLSTIQKIALGLGIPASATVAYILYRRYRESREERLTFVGEDDIEIEMRVP 60
MSTERTSWTSLSTIQKIALGLGIPASATVAYILYRRYRESREERLTFVGEDDIEIEMRVP
Sbjct: 1 MSTERTSWTSLSTIQKIALGLGIPASATVAYILYRRYRESREERLTFVGEDDIEIEMRVP 60
Query: 61 QEAVKLIIGRQGANIKQLRKQTGARIDVDTEDVGDERVLLISGFPVQASGAKITCDKESE 120
QEAVKLIIGRQGANIKQLRKQTGARIDVDTEDVGDERVLLISGFPVQASGAKITCDKESE
Sbjct: 61 QEAVKLIIGRQGANIKQLRKQTGARIDVDTEDVGDERVLLISGFPVQASGAKITCDKESE 120
Query: 121 GTLLLSRLIKISGTQKEVAAAKHLILEKVSEDEELRKRIAHSAETRVPRKQPISVRREDM 180
GTLLLSRLIKISGTQKEVAAAKHLILEKVSEDEELRKRIAHSAETRVPRKQPISVRREDM
Sbjct: 121 GTLLLSRLIKISGTQKEVAAAKHLILEKVSEDEELRKRIAHSAETRVPRKQPISVRREDM 180
Query: 181 TEPGGAGEPALWKNTSSSMEPTAPLVTPPPKGGGDMAVVVSKEGSWEKPSDDSFQKSEAQ 240
TEPGGAGEPALWKNTSSSMEPTAPLVTPPPKGGGDMAVVVSKEGSWEKPSDDSFQKSEAQ
Sbjct: 181 TEPGGAGEPALWKNTSSSMEPTAPLVTPPPKGGGDMAVVVSKEGSWEKPSDDSFQKSEAQ 240
Query: 241 AIPEMPMFEIPSPDFSFHADEYLEVYVSASEHPNHFWIQIVGSRSLQLDKLVNEMTQHYE 300
AIPEMPMFEIPSPDFSFHADEYLEVYVSASEHPNHFWIQIVGSRSLQLDKLVNEMTQHYE
Sbjct: 241 AIPEMPMFEIPSPDFSFHADEYLEVYVSASEHPNHFWIQIVGSRSLQLDKLVNEMTQHYE 300
Query: 301 NSVPEDLTVHVGDIVAAPLPTNGSWYRARVLGTLENGNLDLYFVDFGDNGDCPLKDLRAL 360
NSVPEDLTVHVGDIVAAPLPTNGSWYRARVLGTLENGNLDLYFVDFGDNGDCPLKDLRAL
Sbjct: 301 NSVPEDLTVHVGDIVAAPLPTNGSWYRARVLGTLENGNLDLYFVDFGDNGDCPLKDLRAL 360
Query: 361 RSDFLSLPFQAIECSLARIAPSGDQWEEEALDEFDRLTHCADWKPLVAKISSYVQTGIST 420
RSDFLSLPFQAIECSLARIAPSGDQWEEEALDEFDRLTHCADWKPLVAKISSYVQTGIST
Sbjct: 361 RSDFLSLPFQAIECSLARIAPSGDQWEEEALDEFDRLTHCADWKPLVAKISSYVQTGIST 420
Query: 421 WPKIYLYDTSNGKKLDIGLELVHKGYAIELPEDIEENRAVPDMLKDMATETDASLSTLLT 480
WPKIYLYDTSNGKKLDIGLELVHKGYAIELPEDIEENRAVPDMLKDMATETDASLSTLLT
Sbjct: 421 WPKIYLYDTSNGKKLDIGLELVHKGYAIELPEDIEENRAVPDMLKDMATETDASLSTLLT 480
Query: 481 ETKKSSGEITHTLSCLSLSEAASMSGDDNLEDDYLL 516
ETKKSSGEITHTLSCLSLSEAASMSGDDNLEDDYLL
Sbjct: 481 ETKKSSGEITHTLSCLSLSEAASMSGDDNLEDDYLL 516
>gi|145312259 tudor and KH domain containing isoform a [Homo
sapiens]
Length = 561
Score = 1005 bits (2599), Expect = 0.0
Identities = 516/561 (91%), Positives = 516/561 (91%), Gaps = 45/561 (8%)
Query: 1 MSTERTSWTSLSTIQKIALGLGIPASATVAYILYRRYRESREERLTFVGEDDIEIEMRVP 60
MSTERTSWTSLSTIQKIALGLGIPASATVAYILYRRYRESREERLTFVGEDDIEIEMRVP
Sbjct: 1 MSTERTSWTSLSTIQKIALGLGIPASATVAYILYRRYRESREERLTFVGEDDIEIEMRVP 60
Query: 61 QEAVKLIIGRQGANIKQLRKQTGARIDVDTEDVGDERVLLISGFPVQ------------- 107
QEAVKLIIGRQGANIKQLRKQTGARIDVDTEDVGDERVLLISGFPVQ
Sbjct: 61 QEAVKLIIGRQGANIKQLRKQTGARIDVDTEDVGDERVLLISGFPVQVCKAKAAIHQILT 120
Query: 108 --------------------------------ASGAKITCDKESEGTLLLSRLIKISGTQ 135
ASGAKITCDKESEGTLLLSRLIKISGTQ
Sbjct: 121 ENTPVSEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQ 180
Query: 136 KEVAAAKHLILEKVSEDEELRKRIAHSAETRVPRKQPISVRREDMTEPGGAGEPALWKNT 195
KEVAAAKHLILEKVSEDEELRKRIAHSAETRVPRKQPISVRREDMTEPGGAGEPALWKNT
Sbjct: 181 KEVAAAKHLILEKVSEDEELRKRIAHSAETRVPRKQPISVRREDMTEPGGAGEPALWKNT 240
Query: 196 SSSMEPTAPLVTPPPKGGGDMAVVVSKEGSWEKPSDDSFQKSEAQAIPEMPMFEIPSPDF 255
SSSMEPTAPLVTPPPKGGGDMAVVVSKEGSWEKPSDDSFQKSEAQAIPEMPMFEIPSPDF
Sbjct: 241 SSSMEPTAPLVTPPPKGGGDMAVVVSKEGSWEKPSDDSFQKSEAQAIPEMPMFEIPSPDF 300
Query: 256 SFHADEYLEVYVSASEHPNHFWIQIVGSRSLQLDKLVNEMTQHYENSVPEDLTVHVGDIV 315
SFHADEYLEVYVSASEHPNHFWIQIVGSRSLQLDKLVNEMTQHYENSVPEDLTVHVGDIV
Sbjct: 301 SFHADEYLEVYVSASEHPNHFWIQIVGSRSLQLDKLVNEMTQHYENSVPEDLTVHVGDIV 360
Query: 316 AAPLPTNGSWYRARVLGTLENGNLDLYFVDFGDNGDCPLKDLRALRSDFLSLPFQAIECS 375
AAPLPTNGSWYRARVLGTLENGNLDLYFVDFGDNGDCPLKDLRALRSDFLSLPFQAIECS
Sbjct: 361 AAPLPTNGSWYRARVLGTLENGNLDLYFVDFGDNGDCPLKDLRALRSDFLSLPFQAIECS 420
Query: 376 LARIAPSGDQWEEEALDEFDRLTHCADWKPLVAKISSYVQTGISTWPKIYLYDTSNGKKL 435
LARIAPSGDQWEEEALDEFDRLTHCADWKPLVAKISSYVQTGISTWPKIYLYDTSNGKKL
Sbjct: 421 LARIAPSGDQWEEEALDEFDRLTHCADWKPLVAKISSYVQTGISTWPKIYLYDTSNGKKL 480
Query: 436 DIGLELVHKGYAIELPEDIEENRAVPDMLKDMATETDASLSTLLTETKKSSGEITHTLSC 495
DIGLELVHKGYAIELPEDIEENRAVPDMLKDMATETDASLSTLLTETKKSSGEITHTLSC
Sbjct: 481 DIGLELVHKGYAIELPEDIEENRAVPDMLKDMATETDASLSTLLTETKKSSGEITHTLSC 540
Query: 496 LSLSEAASMSGDDNLEDDYLL 516
LSLSEAASMSGDDNLEDDYLL
Sbjct: 541 LSLSEAASMSGDDNLEDDYLL 561
>gi|145312270 tudor and KH domain containing isoform a [Homo
sapiens]
Length = 561
Score = 1005 bits (2599), Expect = 0.0
Identities = 516/561 (91%), Positives = 516/561 (91%), Gaps = 45/561 (8%)
Query: 1 MSTERTSWTSLSTIQKIALGLGIPASATVAYILYRRYRESREERLTFVGEDDIEIEMRVP 60
MSTERTSWTSLSTIQKIALGLGIPASATVAYILYRRYRESREERLTFVGEDDIEIEMRVP
Sbjct: 1 MSTERTSWTSLSTIQKIALGLGIPASATVAYILYRRYRESREERLTFVGEDDIEIEMRVP 60
Query: 61 QEAVKLIIGRQGANIKQLRKQTGARIDVDTEDVGDERVLLISGFPVQ------------- 107
QEAVKLIIGRQGANIKQLRKQTGARIDVDTEDVGDERVLLISGFPVQ
Sbjct: 61 QEAVKLIIGRQGANIKQLRKQTGARIDVDTEDVGDERVLLISGFPVQVCKAKAAIHQILT 120
Query: 108 --------------------------------ASGAKITCDKESEGTLLLSRLIKISGTQ 135
ASGAKITCDKESEGTLLLSRLIKISGTQ
Sbjct: 121 ENTPVSEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQ 180
Query: 136 KEVAAAKHLILEKVSEDEELRKRIAHSAETRVPRKQPISVRREDMTEPGGAGEPALWKNT 195
KEVAAAKHLILEKVSEDEELRKRIAHSAETRVPRKQPISVRREDMTEPGGAGEPALWKNT
Sbjct: 181 KEVAAAKHLILEKVSEDEELRKRIAHSAETRVPRKQPISVRREDMTEPGGAGEPALWKNT 240
Query: 196 SSSMEPTAPLVTPPPKGGGDMAVVVSKEGSWEKPSDDSFQKSEAQAIPEMPMFEIPSPDF 255
SSSMEPTAPLVTPPPKGGGDMAVVVSKEGSWEKPSDDSFQKSEAQAIPEMPMFEIPSPDF
Sbjct: 241 SSSMEPTAPLVTPPPKGGGDMAVVVSKEGSWEKPSDDSFQKSEAQAIPEMPMFEIPSPDF 300
Query: 256 SFHADEYLEVYVSASEHPNHFWIQIVGSRSLQLDKLVNEMTQHYENSVPEDLTVHVGDIV 315
SFHADEYLEVYVSASEHPNHFWIQIVGSRSLQLDKLVNEMTQHYENSVPEDLTVHVGDIV
Sbjct: 301 SFHADEYLEVYVSASEHPNHFWIQIVGSRSLQLDKLVNEMTQHYENSVPEDLTVHVGDIV 360
Query: 316 AAPLPTNGSWYRARVLGTLENGNLDLYFVDFGDNGDCPLKDLRALRSDFLSLPFQAIECS 375
AAPLPTNGSWYRARVLGTLENGNLDLYFVDFGDNGDCPLKDLRALRSDFLSLPFQAIECS
Sbjct: 361 AAPLPTNGSWYRARVLGTLENGNLDLYFVDFGDNGDCPLKDLRALRSDFLSLPFQAIECS 420
Query: 376 LARIAPSGDQWEEEALDEFDRLTHCADWKPLVAKISSYVQTGISTWPKIYLYDTSNGKKL 435
LARIAPSGDQWEEEALDEFDRLTHCADWKPLVAKISSYVQTGISTWPKIYLYDTSNGKKL
Sbjct: 421 LARIAPSGDQWEEEALDEFDRLTHCADWKPLVAKISSYVQTGISTWPKIYLYDTSNGKKL 480
Query: 436 DIGLELVHKGYAIELPEDIEENRAVPDMLKDMATETDASLSTLLTETKKSSGEITHTLSC 495
DIGLELVHKGYAIELPEDIEENRAVPDMLKDMATETDASLSTLLTETKKSSGEITHTLSC
Sbjct: 481 DIGLELVHKGYAIELPEDIEENRAVPDMLKDMATETDASLSTLLTETKKSSGEITHTLSC 540
Query: 496 LSLSEAASMSGDDNLEDDYLL 516
LSLSEAASMSGDDNLEDDYLL
Sbjct: 541 LSLSEAASMSGDDNLEDDYLL 561
>gi|145312256 tudor and KH domain containing isoform a [Homo
sapiens]
Length = 561
Score = 1005 bits (2599), Expect = 0.0
Identities = 516/561 (91%), Positives = 516/561 (91%), Gaps = 45/561 (8%)
Query: 1 MSTERTSWTSLSTIQKIALGLGIPASATVAYILYRRYRESREERLTFVGEDDIEIEMRVP 60
MSTERTSWTSLSTIQKIALGLGIPASATVAYILYRRYRESREERLTFVGEDDIEIEMRVP
Sbjct: 1 MSTERTSWTSLSTIQKIALGLGIPASATVAYILYRRYRESREERLTFVGEDDIEIEMRVP 60
Query: 61 QEAVKLIIGRQGANIKQLRKQTGARIDVDTEDVGDERVLLISGFPVQ------------- 107
QEAVKLIIGRQGANIKQLRKQTGARIDVDTEDVGDERVLLISGFPVQ
Sbjct: 61 QEAVKLIIGRQGANIKQLRKQTGARIDVDTEDVGDERVLLISGFPVQVCKAKAAIHQILT 120
Query: 108 --------------------------------ASGAKITCDKESEGTLLLSRLIKISGTQ 135
ASGAKITCDKESEGTLLLSRLIKISGTQ
Sbjct: 121 ENTPVSEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQ 180
Query: 136 KEVAAAKHLILEKVSEDEELRKRIAHSAETRVPRKQPISVRREDMTEPGGAGEPALWKNT 195
KEVAAAKHLILEKVSEDEELRKRIAHSAETRVPRKQPISVRREDMTEPGGAGEPALWKNT
Sbjct: 181 KEVAAAKHLILEKVSEDEELRKRIAHSAETRVPRKQPISVRREDMTEPGGAGEPALWKNT 240
Query: 196 SSSMEPTAPLVTPPPKGGGDMAVVVSKEGSWEKPSDDSFQKSEAQAIPEMPMFEIPSPDF 255
SSSMEPTAPLVTPPPKGGGDMAVVVSKEGSWEKPSDDSFQKSEAQAIPEMPMFEIPSPDF
Sbjct: 241 SSSMEPTAPLVTPPPKGGGDMAVVVSKEGSWEKPSDDSFQKSEAQAIPEMPMFEIPSPDF 300
Query: 256 SFHADEYLEVYVSASEHPNHFWIQIVGSRSLQLDKLVNEMTQHYENSVPEDLTVHVGDIV 315
SFHADEYLEVYVSASEHPNHFWIQIVGSRSLQLDKLVNEMTQHYENSVPEDLTVHVGDIV
Sbjct: 301 SFHADEYLEVYVSASEHPNHFWIQIVGSRSLQLDKLVNEMTQHYENSVPEDLTVHVGDIV 360
Query: 316 AAPLPTNGSWYRARVLGTLENGNLDLYFVDFGDNGDCPLKDLRALRSDFLSLPFQAIECS 375
AAPLPTNGSWYRARVLGTLENGNLDLYFVDFGDNGDCPLKDLRALRSDFLSLPFQAIECS
Sbjct: 361 AAPLPTNGSWYRARVLGTLENGNLDLYFVDFGDNGDCPLKDLRALRSDFLSLPFQAIECS 420
Query: 376 LARIAPSGDQWEEEALDEFDRLTHCADWKPLVAKISSYVQTGISTWPKIYLYDTSNGKKL 435
LARIAPSGDQWEEEALDEFDRLTHCADWKPLVAKISSYVQTGISTWPKIYLYDTSNGKKL
Sbjct: 421 LARIAPSGDQWEEEALDEFDRLTHCADWKPLVAKISSYVQTGISTWPKIYLYDTSNGKKL 480
Query: 436 DIGLELVHKGYAIELPEDIEENRAVPDMLKDMATETDASLSTLLTETKKSSGEITHTLSC 495
DIGLELVHKGYAIELPEDIEENRAVPDMLKDMATETDASLSTLLTETKKSSGEITHTLSC
Sbjct: 481 DIGLELVHKGYAIELPEDIEENRAVPDMLKDMATETDASLSTLLTETKKSSGEITHTLSC 540
Query: 496 LSLSEAASMSGDDNLEDDYLL 516
LSLSEAASMSGDDNLEDDYLL
Sbjct: 541 LSLSEAASMSGDDNLEDDYLL 561
>gi|38505161 tudor domain containing 1 [Homo sapiens]
Length = 1189
Score = 89.4 bits (220), Expect = 7e-18
Identities = 50/160 (31%), Positives = 79/160 (49%), Gaps = 4/160 (2%)
Query: 260 DEYLEVYVSASEHPNHFWIQIVGSRSLQ-LDKLVNEMTQHYENSVPEDLTVHVGDIVAAP 318
D+ ++V V P F+ ++ +L+ L+ L + +H + +P +G A
Sbjct: 713 DQTVDVVVCVIYSPGEFYCHVLKEDALKKLNDLNKSLAEHCQQKLPNGFKAEIGQPCCAF 772
Query: 319 LPTNGSWYRARVLGTLENGNLDLYFVDFGDNGDCPLKDLRALRSDFLSLPFQAIECSLAR 378
+GSWYRA V L NG++ ++FVD+G+ + +LR + S FL+LPFQ I C LA
Sbjct: 773 FAGDGSWYRALVKEILPNGHVKVHFVDYGNIEEVTADELRMISSTFLNLPFQGIRCQLAD 832
Query: 379 IAPSGDQWEEEALDEFDRLTHCADWKPLVAKISSYVQTGI 418
I W EEA+ F C L A++ + GI
Sbjct: 833 IQSRNKHWSEEAITRFQM---CVAGIKLQARVVEVTENGI 869
Score = 57.4 bits (137), Expect = 3e-08
Identities = 53/205 (25%), Positives = 91/205 (44%), Gaps = 17/205 (8%)
Query: 260 DEYLEVYVSASEHPNHFWIQIVGSRSLQLDKLVNEMTQHYENSVPE-DLTVHVGDIVAAP 318
DE+ V V+ + P F+ Q + S +L +L ++++ + P D +GDI A
Sbjct: 494 DEFCGV-VAHIQTPEDFFCQQLQS-GRKLAELQASLSKYCDQLPPRSDFYPAIGDICCAQ 551
Query: 319 LPTNGSWYRARVLGTLENGNLDLYFVDFGDNGDCPLKDLRALRSDFLSLPFQAIECSLAR 378
+ WYRA VL ++ + +VD+G+ L L + L LP QAI+C LA
Sbjct: 552 FSEDDQWYRASVLAYASEESVLVGYVDYGNFEILSLMRLCPIIPKLLELPMQAIKCVLAG 611
Query: 379 IAPSGDQWEEEALDEFDRLTHCADWKPLVAKISSYVQTGISTWPKIYLYDTSNGKKLDIG 438
+ PS W EA+ +L K + K+ ++ + L D S + +
Sbjct: 612 VKPSLGIWTPEAICLMKKLVQN---KIITVKVVDKLENS----SLVELIDKSETPHVSVS 664
Query: 439 LELVHKGYAI-------ELPEDIEE 456
L+ G+A+ + P D++E
Sbjct: 665 KVLLDAGFAVGEQSMVTDKPSDVKE 689
Score = 50.1 bits (118), Expect = 5e-06
Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 311 VGDIVAAPLPTNGSWYRARVLGTLENGNLDLYFVDFGDNGDCPLKDLRALRSDFLSLPFQ 370
+GD A ++ WYRA VLGT + ++++ + D+G+ PL ++ + S L+LPFQ
Sbjct: 993 IGDACCAKYTSDDFWYRAVVLGTSDT-DVEVLYADYGNIETLPLCRVQPITSSHLALPFQ 1051
Query: 371 AIECSL 376
I CSL
Sbjct: 1052 IIRCSL 1057
Score = 49.3 bits (116), Expect = 8e-06
Identities = 28/127 (22%), Positives = 60/127 (47%), Gaps = 2/127 (1%)
Query: 267 VSASEHPNHFWIQIVGSRSLQ-LDKLVNEMTQHYENSVPEDLTVHVGDIVAAPLPTNGSW 325
V+ +HP F++Q+ S L+ +++L + + Y N +D G++ A + +W
Sbjct: 270 VTEFKHPGDFYVQLYSSEVLEYMNQLSASLKETYANVHEKDYIPVKGEVCIAKYTVDQTW 329
Query: 326 YRARVLGT-LENGNLDLYFVDFGDNGDCPLKDLRALRSDFLSLPFQAIECSLARIAPSGD 384
RA + ++ + ++D+G+ PL + L + P AI+C +A + P+
Sbjct: 330 NRAIIQNVDVQQKKAHVLYIDYGNEEIIPLNRIYHLNRNIDLFPPCAIKCFVANVIPAEG 389
Query: 385 QWEEEAL 391
W + +
Sbjct: 390 NWSSDCI 396
>gi|40255178 tudor domain containing 5 [Homo sapiens]
Length = 981
Score = 83.6 bits (205), Expect = 4e-16
Identities = 65/221 (29%), Positives = 106/221 (47%), Gaps = 18/221 (8%)
Query: 241 AIPEMPMFEIPSPDFSFHADEYLEVYVSASEHPNHFWIQIVGSRSLQL-DKLVNEMTQHY 299
A+P + +P D S ++E +S P+ F+I+I S +L + ++ EM + Y
Sbjct: 455 AVPNKKLCRLPPLDTSSLIGVFVEYIIS----PSQFYIRIYSRDSSELLEDMMIEMRRCY 510
Query: 300 ENSVPEDLTV------HVGDIVAAPLPTNGSWYRARVLGTLENGNLDLYFVDFGDNGDCP 353
N + D V G + + + WYR + LE +++++ DFG+ G
Sbjct: 511 SNQLVSDRYVMPECFIQPGHLCCVRISEDKWWYRVIIHRVLEKQEVEVFYPDFGNIGIVQ 570
Query: 354 LKDLRALRSDFLSLPFQAIECSLARIAPSGDQWEEEALDEFDRLTHCADWKPLVAKISSY 413
LR L+ + LP QAI CSLA + P + W +A+ +F +L KPLV + Y
Sbjct: 571 KSSLRFLKCCYTKLPAQAIPCSLAWVRPVEEHWTSKAILQFQKL---CGLKPLVGVVDEY 627
Query: 414 VQTGISTWPKIYLYDTSNGKKLDIGLELVHKGYAIELPEDI 454
V GI I+L DTS+ + + L +G+AI E+I
Sbjct: 628 VD-GIL---NIFLCDTSSNEDVYFHHVLRTEGHAIVCRENI 664
>gi|112293287 tudor domain containing 7 [Homo sapiens]
Length = 1098
Score = 81.6 bits (200), Expect = 2e-15
Identities = 63/225 (28%), Positives = 105/225 (46%), Gaps = 12/225 (5%)
Query: 209 PPKGGGDMAVVVSKEGSWEKPSDDSFQKSEAQAIPEMPMFEIPSPDFSFHADEYLEVYVS 268
P G+M + + ++ K D +KS E+P P E+++VYV
Sbjct: 860 PNSKNGNMPMSGNTGENFRKNLTDVIKKSMVDHTSAFSTEELPPPVHLSKPGEHMDVYVP 919
Query: 269 ASEHPNHFWIQIVGSRSLQLDKLVNEMTQHYENSVPEDLTVHVGDIVAAPLPTNGSWYRA 328
+ HP +F IQ +L+ L+ EM +Y S + V + AA + W+R
Sbjct: 920 VACHPGYFVIQ-PWQEIHKLEVLMEEMILYYSVSEERHIAVEKDQVYAAKV--ENKWHRV 976
Query: 329 RVLGTLENGNLDLYFVDFGDNGDCPLKDLRALRSDFLSLPFQAIECSLARIAPSGDQWEE 388
+ G L NG + +Y +D+G + ++ ++ L F LPFQA+ LA + +QW E
Sbjct: 977 LLKGILTNGLVSVYELDYGKHELVNIRKVQPLVDMFRKLPFQAVTAQLAGV--KCNQWSE 1034
Query: 389 EALDEFDRLTHCADWKPLVAKISSYVQTGISTWPK---IYLYDTS 430
EA F + + KPLVA + + ++ + W + +YL DTS
Sbjct: 1035 EASMVF---RNHVEKKPLVALVQTVIENA-NPWDRKVVVYLVDTS 1075
Score = 47.8 bits (112), Expect = 2e-05
Identities = 56/261 (21%), Positives = 104/261 (39%), Gaps = 30/261 (11%)
Query: 247 MFEIPSPDFSFHADEYLEVYVSASEHPNHFWIQIVGSRSLQLDKLVNEMTQHYENSVPED 306
M +I P + V V + N I+ VG +L+ + + Y + P+
Sbjct: 449 MEDITVPPLMIPTEASPSVLVVELSNTNEVVIRYVGKDYSAAQELMEDEMKEYYSKNPKI 508
Query: 307 L---TVHVGDIVAAPLPTNGSWYRARVLGTLENGNLDLYFVDFGDNGDCPLKDLRALRSD 363
V+VG ++A + +W RA+V+ T EN + + +VD+G + + L
Sbjct: 509 TPVQAVNVGQLLAVNAEED-AWLRAQVISTEEN-KIKVCYVDYGFSENVEKSKAYKLNPK 566
Query: 364 FLSLPFQAIECSLARIAPSGDQWEEEALDEFDRLTHCADWKPLVAKISSYVQTGISTWPK 423
F SL FQA +C LA + D + + + + LT KI + + P
Sbjct: 567 FCSLSFQATKCKLAGLEVLSD--DPDLVKVVESLT--------CGKIFAVEILDKADIPL 616
Query: 424 IYLYDTSNGKKLDIGLELVHKGYAIELPEDIEENRAVPDMLKDMATETDASLSTLLTETK 483
+ LYDTS ++I + +A+ D ++ + DA + +
Sbjct: 617 VVLYDTSGEDDININATCL---------------KAICDKSLEVHLQVDAMYTNVKVTNI 661
Query: 484 KSSGEITHTLSCLSLSEAASM 504
S G + + C L++ + +
Sbjct: 662 CSDGTLYCQVPCKGLNKLSDL 682
Score = 42.4 bits (98), Expect = 0.001
Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 10/114 (8%)
Query: 323 GSWYRARVLGTLENGNLDLYFVDFGDNGDCPLKDLRALRSDFL----SLPFQAIECSLAR 378
G W R + + LD+ F+D G + +LR + FL ++P QAI+C LA
Sbjct: 716 GKWLRVEITNVHSSRALDVQFLDSGTVTSVKVSELREIPPRFLQEMIAIPPQAIKCCLAD 775
Query: 379 IAPSGDQWEEEA-LDEFDRLTHCADWKPLVAKISSYVQTGISTWPKIYLYDTSN 431
+ S W +A L D + +C+D V K+ GI+ +YL+ N
Sbjct: 776 LPQSIGMWTPDAVLWLRDSVLNCSDCSIKVTKVDE--TRGIA---HVYLFTPKN 824
>gi|94421471 ring finger protein 17 [Homo sapiens]
Length = 1623
Score = 69.7 bits (169), Expect = 6e-12
Identities = 41/137 (29%), Positives = 75/137 (54%), Gaps = 6/137 (4%)
Query: 263 LEVYVSASEHPNHFWIQIVGSRSLQLDKLVNEMTQHYENSVPEDLTV--HVGDIVAAPLP 320
+ V V P F++Q++ L + L+ + + Y++ E+L + V D
Sbjct: 680 VSVTVCHINSPGDFYLQLI--EGLDILFLLKTIEEFYKSEDGENLEILCPVQDQACVAKF 737
Query: 321 TNGSWYRARVLGTLENGNLDLYFVDFGDNGDCPLKDLRALRSDFLSLPFQAIECSLARIA 380
+G WYRA+V+G + +++ +VDFG+ +KD+R ++ +FL+ P +AI+C LA I
Sbjct: 738 EDGIWYRAKVIGLPGHQEVEVKYVDFGNTAKITIKDVRKIKDEFLNAPEKAIKCKLAYIE 797
Query: 381 P--SGDQWEEEALDEFD 395
P QW +EA ++F+
Sbjct: 798 PYKRTMQWSKEAKEKFE 814
Score = 56.2 bits (134), Expect = 7e-08
Identities = 55/232 (23%), Positives = 104/232 (44%), Gaps = 19/232 (8%)
Query: 226 WEKPSDDSFQKSEAQAIPEMPMFEIPSPDFSFHADEYLEVYVSASEHPNHFWIQIVGSRS 285
W+ PS + +E + + +P+ +F ++ L V++ P ++Q + + +
Sbjct: 882 WD-PSPEEIISNEVHNLNPVSAKSLPNENFQSLYNKELPVHICNVISPEKIYVQWLLTEN 940
Query: 286 LQLDKLVNEMTQHYENSVPEDLTVHVGDIVAAPLPTNGSWYRARVLGTLENGNLDLYFVD 345
L L+ L +M YENS E + A + W R +++ + + +++ D
Sbjct: 941 L-LNSLEEKMIAAYENSKWEPVKWENDMHCAVKIQDKNQWRRGQIIRMVTDTLVEVLLYD 999
Query: 346 FGD----NGDCPLKDLRALRSDFLSLPFQAIECSLARIAPSG--DQWEEEALDEFDRLTH 399
G N DC LR L + ++ ++ECSL I P+G D+W A D L
Sbjct: 1000 VGVELVVNVDC----LRKLEENLKTMGRLSLECSLVDIRPAGGSDKWTATACDCLS-LYL 1054
Query: 400 CADWKPLVAKISSYVQTGISTWP---KIYLYDTSNGKKLDIGLELVHKGYAI 448
++ ++ S + +TWP KI+ D G+++D+ L+ KG A+
Sbjct: 1055 TGAVATIILQVDS--EENNTTWPLPVKIFCRD-EKGERVDVSKYLIKKGLAL 1103
Score = 30.8 bits (68), Expect = 3.1
Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 325 WYRARVLGTLENGNLDLYFVDFGDNGDCPLKDLRALRSDFLSLPFQAIECSLARIAPSGD 384
WYR +V+ + G + + ++D G P L + + +P I C L P G+
Sbjct: 1244 WYRGKVMEVV-GGAVRVQYLDHGFTEKIPQCHLYPILL-YPDIPQFCIPCQLHNTTPVGN 1301
Query: 385 QWEEEALDEFDRL 397
W+ +A++ +L
Sbjct: 1302 VWQPDAIEVLQQL 1314
>gi|58197558 tudor domain containing 6 [Homo sapiens]
Length = 2096
Score = 64.7 bits (156), Expect = 2e-10
Identities = 48/184 (26%), Positives = 89/184 (48%), Gaps = 13/184 (7%)
Query: 219 VVSKEGSWEKPSDDSFQKSEAQAIPEMPMFEIPSP---DFSFHADEYLEVYVSASEHPNH 275
V+ + + E+ + S +S A+ + E EI P + + + V ++P+
Sbjct: 446 VLQSQATEEEEPETSQSQSPAEEVDE----EISLPALRSIRLKMNAFYDAQVEFVKNPSE 501
Query: 276 FWIQIVGSRSLQLDKLVNEMTQHYENSVPED---LTVHVGDIVAAPLPTNGSWYRARVLG 332
FWI++ ++ KL+ M Y ++ D L D+ NG +YRA ++
Sbjct: 502 FWIRL-RKHNVTFSKLMRRMCGFYSSASKLDGVVLKPEPDDLCCVKWKENG-YYRA-IVT 558
Query: 333 TLENGNLDLYFVDFGDNGDCPLKDLRALRSDFLSLPFQAIECSLARIAPSGDQWEEEALD 392
L++ ++D++ VD G++ + D+R L F LP A++C+LA I P G W +EA+
Sbjct: 559 KLDDKSVDVFLVDRGNSENVDWYDVRMLLPQFRQLPILAVKCTLADIWPLGKTWSQEAVS 618
Query: 393 EFDR 396
F +
Sbjct: 619 FFKK 622
Score = 58.9 bits (141), Expect = 1e-08
Identities = 46/164 (28%), Positives = 82/164 (50%), Gaps = 13/164 (7%)
Query: 263 LEVYVSASEHPNHFWIQIVGSRSLQ-LDKLVNEMTQHYENSVPEDLTVHVGDIVA--APL 319
+EV VS E+P +FW Q+ +R++Q L L++++ + +N+ H + +A A
Sbjct: 774 VEVRVSYVENPGYFWCQL--TRNIQGLKTLMSDIQYYCKNTAAP----HQRNTLACLAKR 827
Query: 320 PTNGSWYRARVLGTLENGNLDLYFVDFGDNGDCPLKDLRALRSDFLSLPFQAIECSLAR- 378
N W RA + G ++++ FVD+GD +K++ ++ +FL + QA CSL
Sbjct: 828 TVNRQWSRALISGIQSVEHVNVTFVDYGDREMVSVKNIYSISEEFLKVKAQAFRCSLYNL 887
Query: 379 IAPSGDQ---WEEEALDEFDRLTHCADWKPLVAKISSYVQTGIS 419
I P G W+ +A+ F+ A K L K + + I+
Sbjct: 888 IQPVGQNPFVWDVKAIQAFNEFIDNAWQKNLELKCTIFALASIN 931
Score = 53.9 bits (128), Expect = 3e-07
Identities = 38/137 (27%), Positives = 60/137 (43%), Gaps = 8/137 (5%)
Query: 263 LEVYVSASEHPNHFWIQIVGSRSLQLDKL----VNEMTQHYENSVPEDLTVHVGDIVAAP 318
+ Y + + P +FW Q + LQ ++ E N +P ++GD
Sbjct: 1521 IRAYATVIDGPEYFWCQFADTEKLQCLEVEVQTAGEQVADRRNCIP---CPYIGDPCIVR 1577
Query: 319 LPTNGSWYRARVLGTLENGNLDLYFVDFGDNGDC-PLKDLRALRSDFLSLPFQAIECSLA 377
+G +YRA + E+ + + VDFG+ DC K L A+ S+ LS+P QA C L+
Sbjct: 1578 YREDGHYYRALITNICEDYLVSVRLVDFGNIEDCVDPKALWAIPSELLSVPMQAFPCCLS 1637
Query: 378 RIAPSGDQWEEEALDEF 394
S +E D F
Sbjct: 1638 GFNISEGLCSQEGNDYF 1654
Score = 41.2 bits (95), Expect = 0.002
Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 11/120 (9%)
Query: 265 VYVSASEHPNHFWIQIVGSRSL--QLDKLVNEMTQHYENSVPEDLTVHVGDIVAAPLPTN 322
VY++ + P F+ Q+ + ++ QL + ++++ N L + G + A T+
Sbjct: 990 VYITHIDDPWTFYCQLARNANILEQLSCSITQLSKVLLNLKTSPL--NPGTLCLAKY-TD 1046
Query: 323 GSWYRARVLGTLENGNLDLYFVDFGDNGDCPLKDLRALRSD---FLSLPFQAIECSLARI 379
G+WYR V+ E ++FVDFG+ DL + SD L LP QA+ CSL+ I
Sbjct: 1047 GNWYRGIVI---EKEPKKVFFVDFGNIYVVTSDDLLPIPSDAYDVLLLPMQAVRCSLSDI 1103
Score = 39.3 bits (90), Expect = 0.009
Identities = 31/114 (27%), Positives = 49/114 (42%), Gaps = 4/114 (3%)
Query: 265 VYVSASEHPNHFWIQIVGSRS--LQLDKLVNEMTQHYENSVPEDLTVHVGDIVAAPLPTN 322
VYVS + F++Q++ + L + +N + E V L GD++ A P +
Sbjct: 1309 VYVSHINDLSDFYVQLIEDEAEISHLSERLNSVKTRPEYYVGPPL--QRGDMICAVFPED 1366
Query: 323 GSWYRARVLGTLENGNLDLYFVDFGDNGDCPLKDLRALRSDFLSLPFQAIECSL 376
WYRA + N L + F+D+G+ + L LP I CSL
Sbjct: 1367 NLWYRAVIKEQQPNDLLSVQFIDYGNVSVVHTNKIGRLDLVNAILPGLCIHCSL 1420
Score = 31.6 bits (70), Expect = 1.8
Identities = 34/156 (21%), Positives = 56/156 (35%), Gaps = 5/156 (3%)
Query: 322 NGSWYRARVLGTLENGNL-DLYFVDFGDNGDCPLKDLRALRSDFLSLPFQAIECSLARIA 380
+G WYRA +L T + VD+G LR L ++ +P C+L +
Sbjct: 323 DGHWYRALLLETFRPQRCAQVLHVDYGRKELVSCSSLRYLLPEYFRMPVVTYPCALYGLW 382
Query: 381 PSGDQWEEEALDEFDRLTHCADWKPLVAKISSYVQTGISTWPKIYLYDTSNGKKLDIGLE 440
G W + + L K + AKI Y + +Y D N ++ G++
Sbjct: 383 DGGRGWSRSQVGDLKTLIL---GKAVNAKIEFYCSFEHVYYVSLYGEDGINLNRV-FGVQ 438
Query: 441 LVHKGYAIELPEDIEENRAVPDMLKDMATETDASLS 476
+ + EE + A E D +S
Sbjct: 439 SCCLADRVLQSQATEEEEPETSQSQSPAEEVDEEIS 474
Score = 29.6 bits (65), Expect = 6.9
Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 10/82 (12%)
Query: 325 WYRARVLGTLENGNLDLYFVDFGDNGDCPLKDLRALRSDFLSLPFQAIECSLARIAPSG- 383
W+R RV+ + ++ +D G L R +F +LP + + C LA + P+G
Sbjct: 81 WHRCRVVSRQAQESR-VFLLDEGRTITAGAGSLAPGRREFFNLPSEVLGCVLAGLVPAGC 139
Query: 384 --------DQWEEEALDEFDRL 397
W +A+D L
Sbjct: 140 GAGSGEPPQHWPADAVDFLSNL 161
>gi|4502015 A-kinase anchor protein 1 precursor [Homo sapiens]
Length = 903
Score = 63.9 bits (154), Expect = 3e-10
Identities = 49/147 (33%), Positives = 78/147 (53%), Gaps = 14/147 (9%)
Query: 304 PEDLTVHVGDIVAAPLPTNGSWYRARVLGTLENGN-LDLYFVDFGDNGDCPLKDLRALRS 362
P ++TV I AAP +G+W+RA+V+ + E N +++ +VD+G + LR +RS
Sbjct: 758 PVEITV----ICAAP-GADGAWWRAQVVASYEETNEVEIRYVDYGGYKRVKVDVLRQIRS 812
Query: 363 DFLSLPFQAIECSLARIAP--SGDQWEEEALDEFDRLTHCADWKPLVAKISSYVQTGIST 420
DF++LPFQ E L + P DQ+ EA +T L+A+++SY TG+
Sbjct: 813 DFVTLPFQGAEVLLDSVMPLSDDDQFSPEADAAMSEMTGNT---ALLAQVTSYSPTGL-- 867
Query: 421 WPKIYLYDTSNGKKLDIGLELVHKGYA 447
P I L+ + + I LV +G A
Sbjct: 868 -PLIQLWSVVGDEVVLINRSLVERGLA 893
Score = 30.4 bits (67), Expect = 4.1
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 56 EMRVPQEAVKLIIGRQGANIKQLRKQTGARIDVDT 90
E+ VP+ V +IG+QG + L++ +GA+I + T
Sbjct: 611 EIEVPKHLVGRLIGKQGRYVSFLKQTSGAKIYIST 645
>gi|169163653 PREDICTED: similar to tudor domain containing 1 [Homo
sapiens]
Length = 2080
Score = 59.7 bits (143), Expect = 6e-09
Identities = 34/129 (26%), Positives = 68/129 (52%), Gaps = 5/129 (3%)
Query: 272 HPNHFWIQIVGSRSLQLDKLVNEMTQHYENSVPEDLTVHV---GDIVAAPLPTNGSWYRA 328
+P++FW++ R+ + +++ + + Y+ +++ + G A + +YRA
Sbjct: 639 NPSNFWVRTNDHRN-EFQEIMKNINKFYDLCENDEMILRKPEPGLFCCARYSKDRRFYRA 697
Query: 329 RVLGTLENGNLDLYFVDFGDNGDCPLKDLRALRSDFLSLPFQAIECSLARIAPSGDQWEE 388
V+ + +++YF+D+G+ P D++ L +F LP A+ CSLA I P D W +
Sbjct: 698 -VITEINGYKINVYFLDYGNTDSIPFFDVKILLPEFCELPALAMCCSLAHIFPVEDLWTK 756
Query: 389 EALDEFDRL 397
A+D F +L
Sbjct: 757 AAIDYFKKL 765
Score = 49.3 bits (116), Expect = 8e-06
Identities = 30/113 (26%), Positives = 56/113 (49%), Gaps = 2/113 (1%)
Query: 265 VYVSASEHPNHFWIQIVGSRSLQLDKLVNEMTQHYENSVPEDL-TVHVGDIVAAPLPTNG 323
V VS++ P+ F+ Q++ + +L+ L MT HY+ E T ++ NG
Sbjct: 391 VKVSSALSPSKFYCQLI-KWTPELENLTAHMTLHYDTVCQETSPTCDNFGLLCVARRRNG 449
Query: 324 SWYRARVLGTLENGNLDLYFVDFGDNGDCPLKDLRALRSDFLSLPFQAIECSL 376
W+R + L + ++F+D+G + P ++ L+ DF+ +P + CSL
Sbjct: 450 QWHRGILQQLLPPNQVKIWFMDYGSSEAIPSIYVKKLKQDFILVPLFSFPCSL 502
Score = 48.1 bits (113), Expect = 2e-05
Identities = 35/155 (22%), Positives = 73/155 (47%), Gaps = 8/155 (5%)
Query: 249 EIPSPDFSFHADEYLEVYVSASEHPNHFWIQIVGSRS--LQLDKLVNEMTQHYENSVPED 306
++P P +A ++ YVS +P +F IQ+ + S ++L +N + +
Sbjct: 1431 DLPQPQIYLNAK--VKGYVSNISNPANFHIQLAENESVIIRLADALNATARRLRER--KS 1486
Query: 307 LTVHVGDIVAAPLPTNGSWYRARVLGTLENGNLDLYFVDFGDNGDCPLKDLRALRSDFLS 366
+ VGD+V A + + YRA + L + ++ F+D+G++ + L+ +FL+
Sbjct: 1487 VKPLVGDLVVAEYSGDNAIYRAVIKKILPGNSFEVEFIDYGNSAIVNTSKIYELQREFLT 1546
Query: 367 LPFQAIECSLARIA--PSGDQWEEEALDEFDRLTH 399
+P I L+ + + W+++ +D F H
Sbjct: 1547 VPQLGIHAFLSGVKWNEPDEIWDDKTVDYFTSKVH 1581
Score = 43.5 bits (101), Expect = 5e-04
Identities = 39/126 (30%), Positives = 57/126 (45%), Gaps = 6/126 (4%)
Query: 251 PSPDFSFHADEYLEVYVSASEHPNHFWIQIVGSRSLQLDKLVNEMTQHYENSVPEDLTVH 310
P ++ F LEV S P F Q+ +S L L+ ++ +Y S+ D
Sbjct: 892 PYKEYIFRPGTVLEVKCSCYYGPGDFSCQLQ-CKSEDLKLLMEQIQNYY--SIHSD-PYE 947
Query: 311 VGDIVAAPLPTNGSWYRARVLGTLENGNLDLYFVDFGDNGDCPLKDLRALRSDFLSLPFQ 370
+G A +G W RA VL T + +D+ FVD+G ++DL A+ FL L Q
Sbjct: 948 IGQ-TACVAKYSGKWCRAAVL-TQVSKEVDIVFVDYGYQKRVLIEDLCAINPRFLLLESQ 1005
Query: 371 AIECSL 376
A C L
Sbjct: 1006 AFRCCL 1011
Score = 42.4 bits (98), Expect = 0.001
Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 4/117 (3%)
Query: 264 EVYVSASEHPNHFWIQIVGSRSLQLDKLVNEMTQHYENSVPEDLTVHVGDIVAAPLPTNG 323
EVY+S P F+ Q+ G + L+ + ++T+ + + + +G
Sbjct: 1114 EVYISHIYSPQKFYCQL-GRNNKDLEMIETKITESVNLQNFPKYDSNKMRVCISKYVEDG 1172
Query: 324 SWYRARVLGTLENGNLDLYFVDFGDN---GDCPLKDLRALRSDFLSLPFQAIECSLA 377
YRA + T + +YFVDFG+ G+ L+ + A + L P QAI+C L+
Sbjct: 1173 LSYRALAIPTDSSSEFQVYFVDFGNKQLVGENMLRAISAQFPELLFTPMQAIKCFLS 1229
Score = 36.2 bits (82), Expect = 0.074
Identities = 52/271 (19%), Positives = 107/271 (39%), Gaps = 24/271 (8%)
Query: 234 FQKSEAQAIPEMPMFEIPSPDFSFHADEYLEVYVSASEH---PNHFWIQIVGSRSLQLDK 290
FQ E + P+ ++ S F +L+V ++ S P ++ G +S + +
Sbjct: 131 FQLWEERPDPQQRFLKMDSTSF---LPTFLDVDLTISHIKCLPKDILVKFQGIKSNECEF 187
Query: 291 LVNEMTQHYENSVPEDLTVHVGDIVAAPLPTNGSWYRARVLGTLENGNLDLYFVDFGDNG 350
+ + + +++ V + + +G W R RV+ +N + +D G+
Sbjct: 188 DYHVLQREIQHTPKVKNNVEIDEFCLVEERVSGEWQRGRVMEK-KNELYTVLLIDRGEEL 246
Query: 351 DCPLKDLRALRSDFLSLPFQAIECSLARIAPSGDQWEEEALDEFDRLTHCADWKPLVAKI 410
+ + + LP + + A I P G++W +AL+ F L + ++
Sbjct: 247 RVAGPQIASACGNLFELPPRVVFGIFANILPVGEKWSPKALNYFKSL--------VGIQV 298
Query: 411 SSYVQTGISTWPKIYLYDTSNGKKLDIGLELVHKGYAIELPEDIEEN--RAVPDMLKDMA 468
YVQ + ++ + L++ L + G + L ++ E + +PD+L+
Sbjct: 299 KGYVQAILPLQMFLFEVPKIISQALELQLGRLVDGDSFRLIVEMLEEFPQQMPDLLQHKR 358
Query: 469 TETDASLSTLLTETKKSSGEITHTLSCLSLS 499
E L K +S +I H L L S
Sbjct: 359 PE-------LSLGNKDTSLDIQHVLDKLQPS 382
>gi|169164192 PREDICTED: similar to tudor domain containing 1 [Homo
sapiens]
Length = 2080
Score = 59.7 bits (143), Expect = 6e-09
Identities = 34/129 (26%), Positives = 68/129 (52%), Gaps = 5/129 (3%)
Query: 272 HPNHFWIQIVGSRSLQLDKLVNEMTQHYENSVPEDLTVHV---GDIVAAPLPTNGSWYRA 328
+P++FW++ R+ + +++ + + Y+ +++ + G A + +YRA
Sbjct: 639 NPSNFWVRTNDHRN-EFQEIMKNINKFYDLCENDEMILRKPEPGLFCCARYSKDRRFYRA 697
Query: 329 RVLGTLENGNLDLYFVDFGDNGDCPLKDLRALRSDFLSLPFQAIECSLARIAPSGDQWEE 388
V+ + +++YF+D+G+ P D++ L +F LP A+ CSLA I P D W +
Sbjct: 698 -VITEINGYKINVYFLDYGNTDSIPFFDVKILLPEFCELPALAMCCSLAHIFPVEDLWTK 756
Query: 389 EALDEFDRL 397
A+D F +L
Sbjct: 757 AAIDYFKKL 765
Score = 49.3 bits (116), Expect = 8e-06
Identities = 30/113 (26%), Positives = 56/113 (49%), Gaps = 2/113 (1%)
Query: 265 VYVSASEHPNHFWIQIVGSRSLQLDKLVNEMTQHYENSVPEDL-TVHVGDIVAAPLPTNG 323
V VS++ P+ F+ Q++ + +L+ L MT HY+ E T ++ NG
Sbjct: 391 VKVSSALSPSKFYCQLI-KWTPELENLTAHMTLHYDTVCQETSPTCDNFGLLCVARRRNG 449
Query: 324 SWYRARVLGTLENGNLDLYFVDFGDNGDCPLKDLRALRSDFLSLPFQAIECSL 376
W+R + L + ++F+D+G + P ++ L+ DF+ +P + CSL
Sbjct: 450 QWHRGILQQLLPPNQVKIWFMDYGSSEAIPSIYVKKLKQDFILVPLFSFPCSL 502
Score = 48.1 bits (113), Expect = 2e-05
Identities = 35/155 (22%), Positives = 73/155 (47%), Gaps = 8/155 (5%)
Query: 249 EIPSPDFSFHADEYLEVYVSASEHPNHFWIQIVGSRS--LQLDKLVNEMTQHYENSVPED 306
++P P +A ++ YVS +P +F IQ+ + S ++L +N + +
Sbjct: 1431 DLPQPQIYLNAK--VKGYVSNISNPANFHIQLAENESVIIRLADALNATARRLRER--KS 1486
Query: 307 LTVHVGDIVAAPLPTNGSWYRARVLGTLENGNLDLYFVDFGDNGDCPLKDLRALRSDFLS 366
+ VGD+V A + + YRA + L + ++ F+D+G++ + L+ +FL+
Sbjct: 1487 VKPLVGDLVVAEYSGDNAIYRAVIKKILPGNSFEVEFIDYGNSAIVNTSKIYELQREFLT 1546
Query: 367 LPFQAIECSLARIA--PSGDQWEEEALDEFDRLTH 399
+P I L+ + + W+++ +D F H
Sbjct: 1547 VPQLGIHAFLSGVKWNEPDEIWDDKTVDYFTSKVH 1581
Score = 43.5 bits (101), Expect = 5e-04
Identities = 39/126 (30%), Positives = 57/126 (45%), Gaps = 6/126 (4%)
Query: 251 PSPDFSFHADEYLEVYVSASEHPNHFWIQIVGSRSLQLDKLVNEMTQHYENSVPEDLTVH 310
P ++ F LEV S P F Q+ +S L L+ ++ +Y S+ D
Sbjct: 892 PYKEYIFRPGTVLEVKCSCYYGPGDFSCQLQ-CKSEDLKLLMEQIQNYY--SIHSD-PYE 947
Query: 311 VGDIVAAPLPTNGSWYRARVLGTLENGNLDLYFVDFGDNGDCPLKDLRALRSDFLSLPFQ 370
+G A +G W RA VL T + +D+ FVD+G ++DL A+ FL L Q
Sbjct: 948 IGQ-TACVAKYSGKWCRAAVL-TQVSKEVDIVFVDYGYQKRVLIEDLCAINPRFLLLESQ 1005
Query: 371 AIECSL 376
A C L
Sbjct: 1006 AFRCCL 1011
Score = 42.4 bits (98), Expect = 0.001
Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 4/117 (3%)
Query: 264 EVYVSASEHPNHFWIQIVGSRSLQLDKLVNEMTQHYENSVPEDLTVHVGDIVAAPLPTNG 323
EVY+S P F+ Q+ G + L+ + ++T+ + + + +G
Sbjct: 1114 EVYISHIYSPQKFYCQL-GRNNKDLEMIETKITESVNLQNFPKYDSNKMRVCISKYVEDG 1172
Query: 324 SWYRARVLGTLENGNLDLYFVDFGDN---GDCPLKDLRALRSDFLSLPFQAIECSLA 377
YRA + T + +YFVDFG+ G+ L+ + A + L P QAI+C L+
Sbjct: 1173 LSYRALAIPTDSSSEFQVYFVDFGNKQLVGENMLRAISAQFPELLFTPMQAIKCFLS 1229
Score = 36.2 bits (82), Expect = 0.074
Identities = 52/271 (19%), Positives = 107/271 (39%), Gaps = 24/271 (8%)
Query: 234 FQKSEAQAIPEMPMFEIPSPDFSFHADEYLEVYVSASEH---PNHFWIQIVGSRSLQLDK 290
FQ E + P+ ++ S F +L+V ++ S P ++ G +S + +
Sbjct: 131 FQLWEERPDPQQRFLKMDSTSF---LPTFLDVDLTISHIKCLPKDILVKFQGIKSNECEF 187
Query: 291 LVNEMTQHYENSVPEDLTVHVGDIVAAPLPTNGSWYRARVLGTLENGNLDLYFVDFGDNG 350
+ + + +++ V + + +G W R RV+ +N + +D G+
Sbjct: 188 DYHVLQREIQHTPKVKNNVEIDEFCLVEERVSGEWQRGRVMEK-KNELYTVLLIDRGEEL 246
Query: 351 DCPLKDLRALRSDFLSLPFQAIECSLARIAPSGDQWEEEALDEFDRLTHCADWKPLVAKI 410
+ + + LP + + A I P G++W +AL+ F L + ++
Sbjct: 247 RVAGPQIASACGNLFELPPRVVFGIFANILPVGEKWSPKALNYFKSL--------VGIQV 298
Query: 411 SSYVQTGISTWPKIYLYDTSNGKKLDIGLELVHKGYAIELPEDIEEN--RAVPDMLKDMA 468
YVQ + ++ + L++ L + G + L ++ E + +PD+L+
Sbjct: 299 KGYVQAILPLQMFLFEVPKIISQALELQLGRLVDGDSFRLIVEMLEEFPQQMPDLLQHKR 358
Query: 469 TETDASLSTLLTETKKSSGEITHTLSCLSLS 499
E L K +S +I H L L S
Sbjct: 359 PE-------LSLGNKDTSLDIQHVLDKLQPS 382
>gi|169163210 PREDICTED: similar to tudor domain containing 1 [Homo
sapiens]
Length = 2080
Score = 59.7 bits (143), Expect = 6e-09
Identities = 34/129 (26%), Positives = 68/129 (52%), Gaps = 5/129 (3%)
Query: 272 HPNHFWIQIVGSRSLQLDKLVNEMTQHYENSVPEDLTVHV---GDIVAAPLPTNGSWYRA 328
+P++FW++ R+ + +++ + + Y+ +++ + G A + +YRA
Sbjct: 639 NPSNFWVRTNDHRN-EFQEIMKNINKFYDLCENDEMILRKPEPGLFCCARYSKDRRFYRA 697
Query: 329 RVLGTLENGNLDLYFVDFGDNGDCPLKDLRALRSDFLSLPFQAIECSLARIAPSGDQWEE 388
V+ + +++YF+D+G+ P D++ L +F LP A+ CSLA I P D W +
Sbjct: 698 -VITEINGYKINVYFLDYGNTDSIPFFDVKILLPEFCELPALAMCCSLAHIFPVEDLWTK 756
Query: 389 EALDEFDRL 397
A+D F +L
Sbjct: 757 AAIDYFKKL 765
Score = 49.3 bits (116), Expect = 8e-06
Identities = 30/113 (26%), Positives = 56/113 (49%), Gaps = 2/113 (1%)
Query: 265 VYVSASEHPNHFWIQIVGSRSLQLDKLVNEMTQHYENSVPEDL-TVHVGDIVAAPLPTNG 323
V VS++ P+ F+ Q++ + +L+ L MT HY+ E T ++ NG
Sbjct: 391 VKVSSALSPSKFYCQLI-KWTPELENLTAHMTLHYDTVCQETSPTCDNFGLLCVARRRNG 449
Query: 324 SWYRARVLGTLENGNLDLYFVDFGDNGDCPLKDLRALRSDFLSLPFQAIECSL 376
W+R + L + ++F+D+G + P ++ L+ DF+ +P + CSL
Sbjct: 450 QWHRGILQQLLPPNQVKIWFMDYGSSEAIPSIYVKKLKQDFILVPLFSFPCSL 502
Score = 48.1 bits (113), Expect = 2e-05
Identities = 35/155 (22%), Positives = 73/155 (47%), Gaps = 8/155 (5%)
Query: 249 EIPSPDFSFHADEYLEVYVSASEHPNHFWIQIVGSRS--LQLDKLVNEMTQHYENSVPED 306
++P P +A ++ YVS +P +F IQ+ + S ++L +N + +
Sbjct: 1431 DLPQPQIYLNAK--VKGYVSNISNPANFHIQLAENESVIIRLADALNATARRLRER--KS 1486
Query: 307 LTVHVGDIVAAPLPTNGSWYRARVLGTLENGNLDLYFVDFGDNGDCPLKDLRALRSDFLS 366
+ VGD+V A + + YRA + L + ++ F+D+G++ + L+ +FL+
Sbjct: 1487 VKPLVGDLVVAEYSGDNAIYRAVIKKILPGNSFEVEFIDYGNSAIVNTSKIYELQREFLT 1546
Query: 367 LPFQAIECSLARIA--PSGDQWEEEALDEFDRLTH 399
+P I L+ + + W+++ +D F H
Sbjct: 1547 VPQLGIHAFLSGVKWNEPDEIWDDKTVDYFTSKVH 1581
Score = 43.5 bits (101), Expect = 5e-04
Identities = 39/126 (30%), Positives = 57/126 (45%), Gaps = 6/126 (4%)
Query: 251 PSPDFSFHADEYLEVYVSASEHPNHFWIQIVGSRSLQLDKLVNEMTQHYENSVPEDLTVH 310
P ++ F LEV S P F Q+ +S L L+ ++ +Y S+ D
Sbjct: 892 PYKEYIFRPGTVLEVKCSCYYGPGDFSCQLQ-CKSEDLKLLMEQIQNYY--SIHSD-PYE 947
Query: 311 VGDIVAAPLPTNGSWYRARVLGTLENGNLDLYFVDFGDNGDCPLKDLRALRSDFLSLPFQ 370
+G A +G W RA VL T + +D+ FVD+G ++DL A+ FL L Q
Sbjct: 948 IGQ-TACVAKYSGKWCRAAVL-TQVSKEVDIVFVDYGYQKRVLIEDLCAINPRFLLLESQ 1005
Query: 371 AIECSL 376
A C L
Sbjct: 1006 AFRCCL 1011
Score = 42.4 bits (98), Expect = 0.001
Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 4/117 (3%)
Query: 264 EVYVSASEHPNHFWIQIVGSRSLQLDKLVNEMTQHYENSVPEDLTVHVGDIVAAPLPTNG 323
EVY+S P F+ Q+ G + L+ + ++T+ + + + +G
Sbjct: 1114 EVYISHIYSPQKFYCQL-GRNNKDLEMIETKITESVNLQNFPKYDSNKMRVCISKYVEDG 1172
Query: 324 SWYRARVLGTLENGNLDLYFVDFGDN---GDCPLKDLRALRSDFLSLPFQAIECSLA 377
YRA + T + +YFVDFG+ G+ L+ + A + L P QAI+C L+
Sbjct: 1173 LSYRALAIPTDSSSEFQVYFVDFGNKQLVGENMLRAISAQFPELLFTPMQAIKCFLS 1229
Score = 36.2 bits (82), Expect = 0.074
Identities = 52/271 (19%), Positives = 107/271 (39%), Gaps = 24/271 (8%)
Query: 234 FQKSEAQAIPEMPMFEIPSPDFSFHADEYLEVYVSASEH---PNHFWIQIVGSRSLQLDK 290
FQ E + P+ ++ S F +L+V ++ S P ++ G +S + +
Sbjct: 131 FQLWEERPDPQQRFLKMDSTSF---LPTFLDVDLTISHIKCLPKDILVKFQGIKSNECEF 187
Query: 291 LVNEMTQHYENSVPEDLTVHVGDIVAAPLPTNGSWYRARVLGTLENGNLDLYFVDFGDNG 350
+ + + +++ V + + +G W R RV+ +N + +D G+
Sbjct: 188 DYHVLQREIQHTPKVKNNVEIDEFCLVEERVSGEWQRGRVMEK-KNELYTVLLIDRGEEL 246
Query: 351 DCPLKDLRALRSDFLSLPFQAIECSLARIAPSGDQWEEEALDEFDRLTHCADWKPLVAKI 410
+ + + LP + + A I P G++W +AL+ F L + ++
Sbjct: 247 RVAGPQIASACGNLFELPPRVVFGIFANILPVGEKWSPKALNYFKSL--------VGIQV 298
Query: 411 SSYVQTGISTWPKIYLYDTSNGKKLDIGLELVHKGYAIELPEDIEEN--RAVPDMLKDMA 468
YVQ + ++ + L++ L + G + L ++ E + +PD+L+
Sbjct: 299 KGYVQAILPLQMFLFEVPKIISQALELQLGRLVDGDSFRLIVEMLEEFPQQMPDLLQHKR 358
Query: 469 TETDASLSTLLTETKKSSGEITHTLSCLSLS 499
E L K +S +I H L L S
Sbjct: 359 PE-------LSLGNKDTSLDIQHVLDKLQPS 382
>gi|166851804 tudor domain containing 9 [Homo sapiens]
Length = 1382
Score = 57.0 bits (136), Expect = 4e-08
Identities = 65/239 (27%), Positives = 108/239 (45%), Gaps = 24/239 (10%)
Query: 260 DEYLEVYVSASEHPNHFW-IQIVGSRSLQLDKLVNEMTQHYENSVPEDLTVHVGDIVAAP 318
D L + V+ HFW +I + S L KL E+ Q VP H + AP
Sbjct: 897 DLLLTIDVTEVVEVGHFWGYRIDENNSEILKKLTAEINQL--TLVPLPTHPHPDLVCLAP 954
Query: 319 LPT--NGSWYRARVLGTLENGNLDLYFVDFGDNGDCPLKDLRALRSDFLSLPFQAIECSL 376
++RA+VL N + +++FVD+G+ L L + FL LPFQA+E +
Sbjct: 955 FADFDKQRYFRAQVLYVSGN-SAEVFFVDYGNKSHVDLHLLMEIPCQFLELPFQALEFKI 1013
Query: 377 ARIAPS------GDQWEEEALDEFDRLTHCADWKPLVAKISSYVQTGISTWPKIYLYDTS 430
++ PS G W + A F L L+ K+ S V + + +Y Y +
Sbjct: 1014 CKMRPSAKSLVCGKHWSDGASQWFASLVSGC---TLLVKVFSVVHSVLHV--DVYQY-SG 1067
Query: 431 NGKKLDIGLELVHKGYAIELPEDIEENRAVPDMLKDMATE-----TDASLSTLLTETKK 484
++I L+ +GYA EL E+ E++ ++LK + ++ TD S+ + + +K
Sbjct: 1068 VQDAINIRDVLIQQGYA-ELTEESYESKQSHEVLKGLFSKSVENMTDGSVPFPMKDDEK 1125
>gi|77404397 staphylococcal nuclease domain containing 1 [Homo
sapiens]
Length = 910
Score = 48.9 bits (115), Expect = 1e-05
Identities = 64/265 (24%), Positives = 112/265 (42%), Gaps = 23/265 (8%)
Query: 219 VVSKEGSWEKPSDDSFQKSEAQAIPE-MPMFEIPSPDFSFHADEYLEVYVSASEHPNHFW 277
++S E + ++ + + E Q + E MP+ E S Y V+V+ HF+
Sbjct: 643 LLSAEEAAKQKKEKVWAHYEEQPVEEVMPVLEEKERSAS-----YKPVFVTEITDDLHFY 697
Query: 278 IQIVGSRSLQLDKLVNEMTQHYENSVPED--LTVHVGDIVAAPLPTNGSWYRARVLGTLE 335
+Q V + + QL+KL+ M + P + G+ A +G WYRARV
Sbjct: 698 VQDVETGT-QLEKLMENMRNDIASHPPVEGSYAPRRGEFCIAKF-VDGEWYRARVEKVES 755
Query: 336 NGNLDLYFVDFGDNGDCPLKDLRALRSDFLS--LPFQAIECSLARI-APSGDQWEEEALD 392
+ ++++D+G+ P L L F + LP QA E + A I P D +A+D
Sbjct: 756 PAKIHVFYIDYGNREVLPSTRLGTLSPAFSTRVLPAQATEYAFAFIQVPQDDDARTDAVD 815
Query: 393 EFDRLTHCADWKPLVAKISSYVQTGISTWPKIYLYDTSNGKKLDIGLELVHKGYA-IELP 451
R V +S + P + L + K D+GL LV +G +E+
Sbjct: 816 SVVRDIQNTQCLLNVEHLS-------AGCPHVTLQFADS--KGDVGLGLVKEGLVMVEVR 866
Query: 452 EDIEENRAVPDMLKDMATETDASLS 476
++ + + + + L + A L+
Sbjct: 867 KEKQFQKVITEYLNAQESAKSARLN 891
>gi|161016765 tudor domain containing 12 [Homo sapiens]
Length = 395
Score = 46.2 bits (108), Expect = 7e-05
Identities = 50/213 (23%), Positives = 83/213 (38%), Gaps = 35/213 (16%)
Query: 263 LEVYVSASEHPNHFWIQIVG-----SRSLQLDKLVNEMTQHYENSVPED-----LTVHVG 312
L++ V E P FW+ I G + KL + M Y NS +D LT+ G
Sbjct: 2 LQLLVLKIEDPGCFWVIIKGCSPFLDHDVDYQKLNSAMNDFY-NSTCQDIEIKPLTLEEG 60
Query: 313 DIVAAPLPTNGSWYRARVLGTLENGN---LDLYFVDFGDNGDCPLKDLRALRSDFLSLPF 369
+ W RA V + + + + VDF N K++R + F+ LP+
Sbjct: 61 QVCVVYCEELKCWCRAIVKSITSSADQYLAECFLVDFAKNIPVKSKNIRVVVESFMQLPY 120
Query: 370 QAIECSLARIAP---------------SGDQWEEEALDEFDRLTHCADWKPLVAKISSYV 414
+A + SL P +W+ A+ F L + A++ +
Sbjct: 121 RAKKFSLYCTKPVTLHIDFCRDSTDIVPAKKWDNAAIQYFQNLLKAT--TQVEARLCAVE 178
Query: 415 QTGISTWPKIYLYDTSNGKKLDIGLELVHKGYA 447
+ ++YLY T +K+ + +LV K YA
Sbjct: 179 EDTF----EVYLYVTIKDEKVCVNDDLVAKNYA 207
>gi|194306633 poly(rC) binding protein 3 isoform 2 [Homo sapiens]
Length = 345
Score = 43.9 bits (102), Expect = 4e-04
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 7/75 (9%)
Query: 56 EMRVPQEAVKLIIGRQGANIKQLRKQTGARIDVDTEDVG-DERVLLISGFPVQAS----- 109
E+ +P + + IIGRQG I ++R+ +GA+I + G ER + I+G P S
Sbjct: 271 ELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYL 330
Query: 110 -GAKITCDKESEGTL 123
A++T + GTL
Sbjct: 331 INARLTSEVTGMGTL 345
Score = 36.2 bits (82), Expect = 0.074
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Query: 53 IEIEMRVPQEAVKLIIGRQGANIKQLRKQTGARIDV--DTEDVGDERVLLISGFPVQASG 110
+ + + VP +IG+ G+ IK++R+ TGA++ V D ER + ISG P
Sbjct: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTP----D 185
Query: 111 AKITCDKE 118
A I C K+
Sbjct: 186 AIIQCVKQ 193
Score = 34.3 bits (77), Expect = 0.28
Identities = 17/51 (33%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 53 IEIEMRVPQEAVKLIIGRQGANIKQLRKQTGARIDVDTEDVGDERVLLISG 103
+ I + + + V IIG++G +K++R+++GARI++ +E ER++ I+G
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI-SEGNCPERIVTITG 95
>gi|194306631 poly(rC) binding protein 3 isoform 1 [Homo sapiens]
Length = 371
Score = 43.9 bits (102), Expect = 4e-04
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 7/75 (9%)
Query: 56 EMRVPQEAVKLIIGRQGANIKQLRKQTGARIDVDTEDVG-DERVLLISGFPVQAS----- 109
E+ +P + + IIGRQG I ++R+ +GA+I + G ER + I+G P S
Sbjct: 297 ELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYL 356
Query: 110 -GAKITCDKESEGTL 123
A++T + GTL
Sbjct: 357 INARLTSEVTGMGTL 371
Score = 36.2 bits (82), Expect = 0.074
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Query: 53 IEIEMRVPQEAVKLIIGRQGANIKQLRKQTGARIDV--DTEDVGDERVLLISGFPVQASG 110
+ + + VP +IG+ G+ IK++R+ TGA++ V D ER + ISG P
Sbjct: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTP----D 185
Query: 111 AKITCDKE 118
A I C K+
Sbjct: 186 AIIQCVKQ 193
Score = 34.3 bits (77), Expect = 0.28
Identities = 17/51 (33%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 53 IEIEMRVPQEAVKLIIGRQGANIKQLRKQTGARIDVDTEDVGDERVLLISG 103
+ I + + + V IIG++G +K++R+++GARI++ +E ER++ I+G
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI-SEGNCPERIVTITG 95
>gi|154355000 KH-type splicing regulatory protein [Homo sapiens]
Length = 711
Score = 41.6 bits (96), Expect = 0.002
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 54 EIEMRVPQEAVKLIIGRQGANIKQLRKQTGARIDVDTE--DVGDE--RVLLISGFPVQAS 109
E+ +P L+IGR G N+K + +QTGA +++ + GD ++ +I G P Q
Sbjct: 426 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQID 485
Query: 110 GAKITCDKESEGTL 123
AK +++ EG L
Sbjct: 486 HAKQLIEEKIEGPL 499
Score = 39.7 bits (91), Expect = 0.007
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 56 EMRVPQEAVKLIIGRQGANIKQLRKQTGARIDVDTEDVG-DERVLLISGFPVQASGAKIT 114
E RVP V LIIGR G I ++++ +G ++ + + G ER + ++G P AK+
Sbjct: 148 EYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMM 207
Query: 115 CD 116
D
Sbjct: 208 LD 209
Score = 37.7 bits (86), Expect = 0.025
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 55 IEMRVPQEAVKLIIGRQGANIKQLRKQTGARIDVDTED-VGDERVLLISGFP 105
I++ VP+ +V ++IGR G IK+++ G RI +D G E++ I G P
Sbjct: 325 IDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPP 376
Score = 34.3 bits (77), Expect = 0.28
Identities = 30/131 (22%), Positives = 58/131 (44%), Gaps = 8/131 (6%)
Query: 49 GEDDIEIEMRVPQEAVKLIIGRQGANIKQLRKQTGAR---IDVDTEDVGDERVLLISGFP 105
G++ E+ +P L+IG+ G IKQL+++ G + I +++ ++ L I G P
Sbjct: 230 GQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDP 289
Query: 106 VQASGA-----KITCDKESEGTLLLSRLIKISGTQKEVAAAKHLILEKVSEDEELRKRIA 160
+ A I +++ G + G +V +H + + E+ K+I
Sbjct: 290 YKVQQACEMVMDILRERDQGGFGDRNEYGSRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQ 349
Query: 161 HSAETRVPRKQ 171
+ A R+ KQ
Sbjct: 350 NDAGVRIQFKQ 360
>gi|9966803 poly(rC) binding protein 4 isoform a [Homo sapiens]
Length = 424
Score = 40.8 bits (94), Expect = 0.003
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 56 EMRVPQEAVKLIIGRQGANIKQLRKQTGARIDVDTEDVG-DERVLLISGFPVQASGAK 112
E VP + + +IGRQG+ I ++R+ +GA I + + G ER + I+G PV + A+
Sbjct: 266 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQ 323
>gi|14670373 poly(rC) binding protein 4 isoform c [Homo sapiens]
Length = 403
Score = 40.8 bits (94), Expect = 0.003
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 56 EMRVPQEAVKLIIGRQGANIKQLRKQTGARIDVDTEDVG-DERVLLISGFPVQASGAK 112
E VP + + +IGRQG+ I ++R+ +GA I + + G ER + I+G PV + A+
Sbjct: 245 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQ 302
Score = 35.8 bits (81), Expect = 0.096
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 48 VGEDDIEIEMRVPQEAVKLIIGRQGANIKQLRKQTGARIDV--DTEDVGDERVLLISGFP 105
V + + + +P +IG+ G IK++R+ TGA++ V D ER + +SG P
Sbjct: 97 VSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVP 156
Score = 32.3 bits (72), Expect = 1.1
Identities = 17/51 (33%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 53 IEIEMRVPQEAVKLIIGRQGANIKQLRKQTGARIDVDTEDVGDERVLLISG 103
+ + M + + V IIG++G +K++R+Q+ ARI + +E ER+ I+G
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITI-SEGSCPERITTITG 67
>gi|14670369 poly(rC) binding protein 4 isoform c [Homo sapiens]
Length = 403
Score = 40.8 bits (94), Expect = 0.003
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 56 EMRVPQEAVKLIIGRQGANIKQLRKQTGARIDVDTEDVG-DERVLLISGFPVQASGAK 112
E VP + + +IGRQG+ I ++R+ +GA I + + G ER + I+G PV + A+
Sbjct: 245 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQ 302
Score = 35.8 bits (81), Expect = 0.096
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 48 VGEDDIEIEMRVPQEAVKLIIGRQGANIKQLRKQTGARIDV--DTEDVGDERVLLISGFP 105
V + + + +P +IG+ G IK++R+ TGA++ V D ER + +SG P
Sbjct: 97 VSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVP 156
Score = 32.3 bits (72), Expect = 1.1
Identities = 17/51 (33%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 53 IEIEMRVPQEAVKLIIGRQGANIKQLRKQTGARIDVDTEDVGDERVLLISG 103
+ + M + + V IIG++G +K++R+Q+ ARI + +E ER+ I+G
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITI-SEGSCPERITTITG 67
>gi|38683807 ankyrin repeat domain protein 17 isoform a [Homo sapiens]
Length = 2603
Score = 40.8 bits (94), Expect = 0.003
Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 16/111 (14%)
Query: 56 EMRVPQEAVKLIIGRQGANIKQLRKQTGARIDVDTE-DVGDERVLLISGFPVQASGAKIT 114
++ VP + +IGR G NI +R+ TGA ID+D + D +R++ I G G + T
Sbjct: 1729 KVSVPSTVISRVIGRGGCNINAIREFTGAHIDIDKQKDKTGDRIITIRG------GTEST 1782
Query: 115 CDKESEGTLLLSRLIKISGTQKEVAAAKHLILEKVSEDEELRKRIAHSAET 165
+ T L++ LIK KE+ LI + + +I SA T
Sbjct: 1783 ----RQATQLINALIK--DPDKEI---DELIPKNRLKSSSANSKIGSSAPT 1824
>gi|38683816 ankyrin repeat domain protein 17 isoform b [Homo sapiens]
Length = 2352
Score = 40.8 bits (94), Expect = 0.003
Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 16/111 (14%)
Query: 56 EMRVPQEAVKLIIGRQGANIKQLRKQTGARIDVDTE-DVGDERVLLISGFPVQASGAKIT 114
++ VP + +IGR G NI +R+ TGA ID+D + D +R++ I G G + T
Sbjct: 1478 KVSVPSTVISRVIGRGGCNINAIREFTGAHIDIDKQKDKTGDRIITIRG------GTEST 1531
Query: 115 CDKESEGTLLLSRLIKISGTQKEVAAAKHLILEKVSEDEELRKRIAHSAET 165
+ T L++ LIK KE+ LI + + +I SA T
Sbjct: 1532 ----RQATQLINALIK--DPDKEI---DELIPKNRLKSSSANSKIGSSAPT 1573
>gi|17402900 far upstream element-binding protein [Homo sapiens]
Length = 644
Score = 40.4 bits (93), Expect = 0.004
Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 37 YRESREERLTFVGEDDIEIEMRVPQEAVKLIIGRQGANIKQLRKQTGARIDVDTED-VGD 95
+RE R E + +G ++ I++ +P+ AV ++IGR G IK+++ G RI +D
Sbjct: 261 FREVRNEYGSRIGGNE-GIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTP 319
Query: 96 ERVLLISGFP 105
ER+ I+G P
Sbjct: 320 ERIAQITGPP 329
Score = 37.7 bits (86), Expect = 0.025
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 56 EMRVPQEAVKLIIGRQGANIKQLRKQTGARIDVDTEDVG-DERVLLISGFPVQASGAKIT 114
E +VP V IIGR G I ++++++G +I + + G ER +++G P AK
Sbjct: 104 EYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRL 163
Query: 115 CDK 117
D+
Sbjct: 164 LDQ 166
Score = 35.4 bits (80), Expect = 0.13
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 56 EMRVPQEAVKLIIGRQGANIKQLRKQTGAR---IDVDTEDVGDERVLLISGFPVQASGAK 112
E+ +P L+IG+ G IKQL+++ G + I ++ G ++ L I+G P + AK
Sbjct: 189 EIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAK 248
Score = 31.6 bits (70), Expect = 1.8
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Query: 54 EIEMRVPQEAVKLIIGRQGANIKQLRKQTGARIDVDTEDVGDE----RVLLISGFPVQAS 109
E VP LIIG+ G IK + +Q+GARI++ + ++ I G P Q
Sbjct: 378 EFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQID 437
Query: 110 GAKITCDKESEG 121
A+ +++ G
Sbjct: 438 YARQLIEEKIGG 449
>gi|56118219 insulin-like growth factor 2 mRNA binding protein 2
isoform b [Homo sapiens]
Length = 556
Score = 39.7 bits (91), Expect = 0.007
Identities = 21/53 (39%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Query: 55 IEMRVPQEAVKLIIGRQGANIKQLRKQTGARIDVDTEDVGD--ERVLLISGFP 105
+ + +P +AV IIG++GA+IKQL + GA I + + D ER+++I+G P
Sbjct: 387 VNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPP 439
Score = 37.7 bits (86), Expect = 0.025
Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 12/122 (9%)
Query: 52 DIEIEMRVPQEAVKLIIGRQGANIKQLRKQTGARIDVDTEDVGD--ERVLLISGFPVQAS 109
D + + VP + V IIG++G IK + KQT +R+D+ ++ E+ + I P S
Sbjct: 193 DFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKENSGAAEKPVTIHATPEGTS 252
Query: 110 GA----KITCDKESEGTLLLSRLIKISGTQKEVAAAKHLILEKVSEDEELRKRIAHSAET 165
A KE++ T L + ++ A L+ + ++ K+I H T
Sbjct: 253 EACRMILEIMQKEADETKLAEEI------PLKILAHNGLVGRLIGKEGRNLKKIEHETGT 306
Query: 166 RV 167
++
Sbjct: 307 KI 308
Score = 32.3 bits (72), Expect = 1.1
Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 8/91 (8%)
Query: 32 ILYRRYRESREERLTFVGEDDIEIEMRVPQEAVKLIIGRQGANIKQLRKQTGARIDV--- 88
IL +E+ E +L ++I +++ V +IG++G N+K++ +TG +I +
Sbjct: 258 ILEIMQKEADETKLA----EEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSL 313
Query: 89 -DTEDVGDERVLLISGFPVQASGAKITCDKE 118
D ER + + G + A+I K+
Sbjct: 314 QDLSIYNPERTITVKGTVEACASAEIEIMKK 344
Score = 31.2 bits (69), Expect = 2.4
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Query: 50 EDDIEIEMRVPQEAVKLIIGRQGANIKQLRKQTGARIDV---DTEDVGDERVLLISG--F 104
E +E +RVP +IG+ G + +L+ T A + V T D +E ++ I G F
Sbjct: 464 EVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVPRDQTPDENEEVIVRIIGHFF 523
Query: 105 PVQASGAKI 113
Q + KI
Sbjct: 524 ASQTAQRKI 532
>gi|64085377 insulin-like growth factor 2 mRNA binding protein 2
isoform a [Homo sapiens]
Length = 599
Score = 39.7 bits (91), Expect = 0.007
Identities = 21/53 (39%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Query: 55 IEMRVPQEAVKLIIGRQGANIKQLRKQTGARIDVDTEDVGD--ERVLLISGFP 105
+ + +P +AV IIG++GA+IKQL + GA I + + D ER+++I+G P
Sbjct: 430 VNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPP 482
Score = 37.7 bits (86), Expect = 0.025
Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 12/122 (9%)
Query: 52 DIEIEMRVPQEAVKLIIGRQGANIKQLRKQTGARIDVDTEDVGD--ERVLLISGFPVQAS 109
D + + VP + V IIG++G IK + KQT +R+D+ ++ E+ + I P S
Sbjct: 193 DFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKENSGAAEKPVTIHATPEGTS 252
Query: 110 GA----KITCDKESEGTLLLSRLIKISGTQKEVAAAKHLILEKVSEDEELRKRIAHSAET 165
A KE++ T L + ++ A L+ + ++ K+I H T
Sbjct: 253 EACRMILEIMQKEADETKLAEEI------PLKILAHNGLVGRLIGKEGRNLKKIEHETGT 306
Query: 166 RV 167
++
Sbjct: 307 KI 308
Score = 32.3 bits (72), Expect = 1.1
Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 8/91 (8%)
Query: 32 ILYRRYRESREERLTFVGEDDIEIEMRVPQEAVKLIIGRQGANIKQLRKQTGARIDV--- 88
IL +E+ E +L ++I +++ V +IG++G N+K++ +TG +I +
Sbjct: 258 ILEIMQKEADETKLA----EEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSL 313
Query: 89 -DTEDVGDERVLLISGFPVQASGAKITCDKE 118
D ER + + G + A+I K+
Sbjct: 314 QDLSIYNPERTITVKGTVEACASAEIEIMKK 344
Score = 31.2 bits (69), Expect = 2.4
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Query: 50 EDDIEIEMRVPQEAVKLIIGRQGANIKQLRKQTGARIDV---DTEDVGDERVLLISG--F 104
E +E +RVP +IG+ G + +L+ T A + V T D +E ++ I G F
Sbjct: 507 EVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVPRDQTPDENEEVIVRIIGHFF 566
Query: 105 PVQASGAKI 113
Q + KI
Sbjct: 567 ASQTAQRKI 575
>gi|222352151 poly(rC) binding protein 1 [Homo sapiens]
Length = 356
Score = 39.3 bits (90), Expect = 0.009
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 29/98 (29%)
Query: 56 EMRVPQEAVKLIIGRQGANIKQLRKQTGARIDVDTEDVGDERVLLISGFPVQASGAKITC 115
E+ +P + IIGRQGANI ++R+ +GA+I + PV+ S
Sbjct: 283 ELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIAN--------------PVEGSS----- 323
Query: 116 DKESEGTLLLSRLIKISGTQKEVAAAKHLILEKVSEDE 153
R + I+G+ ++ A++LI ++S ++
Sbjct: 324 ----------GRQVTITGSAASISLAQYLINARLSSEK 351
Score = 35.0 bits (79), Expect = 0.16
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 46 TFVGEDDIEIEMRVPQEAVKLIIGRQGANIKQLRKQTGARIDV--DTEDVGDERVLLISG 103
T + + + VP +IG+ G IK++R+ TGA++ V D ER + I+G
Sbjct: 91 TAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAG 150
Query: 104 FP 105
P
Sbjct: 151 VP 152
Score = 34.3 bits (77), Expect = 0.28
Identities = 16/51 (31%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Query: 53 IEIEMRVPQEAVKLIIGRQGANIKQLRKQTGARIDVDTEDVGDERVLLISG 103
+ I + + + V IIG++G ++K++R+++GARI++ +E ER++ ++G
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINI-SEGNCPERIITLTG 63
>gi|14165439 heterogeneous nuclear ribonucleoprotein K isoform a
[Homo sapiens]
Length = 464
Score = 39.3 bits (90), Expect = 0.009
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 48 VGEDDIEIEMRVPQEAVKLIIGRQGANIKQLRKQTGARIDVDTEDVGDE-RVLLISGFPV 106
+G I ++ +P++ IIG+ G IKQ+R ++GA I +D G E R++ I+G
Sbjct: 383 LGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQD 442
Query: 107 QASGAK 112
Q A+
Sbjct: 443 QIQNAQ 448
Score = 33.1 bits (74), Expect = 0.62
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 47 FVGED-DIEIEMRVPQEAVKLIIGRQGANIKQLRKQTGARIDVDTE--DVGDERVLLISG 103
+ G D D E+ + + Q IIG +GA IK+LR+ T I + E +RV+LI G
Sbjct: 138 YKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVVLIGG 197
Query: 104 FP 105
P
Sbjct: 198 KP 199
Score = 32.0 bits (71), Expect = 1.4
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Query: 35 RRYRESREERLTFVG----EDDIEIEMRVPQEAVKLIIGRQGANIKQLRKQTGARIDVDT 90
+R E EE F ++ +E+ + + + +IG+ G NIK LR A + V
Sbjct: 21 KRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV-P 79
Query: 91 EDVGDERVLLIS 102
+ G ER+L IS
Sbjct: 80 DSSGPERILSIS 91
>gi|14165435 heterogeneous nuclear ribonucleoprotein K isoform b
[Homo sapiens]
Length = 463
Score = 39.3 bits (90), Expect = 0.009
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 48 VGEDDIEIEMRVPQEAVKLIIGRQGANIKQLRKQTGARIDVDTEDVGDE-RVLLISGFPV 106
+G I ++ +P++ IIG+ G IKQ+R ++GA I +D G E R++ I+G
Sbjct: 383 LGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQD 442
Query: 107 QASGAK 112
Q A+
Sbjct: 443 QIQNAQ 448
Score = 33.1 bits (74), Expect = 0.62
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 47 FVGED-DIEIEMRVPQEAVKLIIGRQGANIKQLRKQTGARIDVDTE--DVGDERVLLISG 103
+ G D D E+ + + Q IIG +GA IK+LR+ T I + E +RV+LI G
Sbjct: 138 YKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVVLIGG 197
Query: 104 FP 105
P
Sbjct: 198 KP 199
Score = 32.0 bits (71), Expect = 1.4
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Query: 35 RRYRESREERLTFVG----EDDIEIEMRVPQEAVKLIIGRQGANIKQLRKQTGARIDVDT 90
+R E EE F ++ +E+ + + + +IG+ G NIK LR A + V
Sbjct: 21 KRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV-P 79
Query: 91 EDVGDERVLLIS 102
+ G ER+L IS
Sbjct: 80 DSSGPERILSIS 91
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.132 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,110,367
Number of Sequences: 37866
Number of extensions: 971142
Number of successful extensions: 2869
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 2652
Number of HSP's gapped (non-prelim): 232
length of query: 516
length of database: 18,247,518
effective HSP length: 107
effective length of query: 409
effective length of database: 14,195,856
effective search space: 5806105104
effective search space used: 5806105104
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.