Guide to the Human Genome
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Name: TRMT5 Sequence: fasta or formatted (509aa) NCBI GI: 145275187
Description:

tRNA methyltransferase 5

Referenced in:

tRNA Enzymes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.9         25           2
 C cysteine            1.2          6           1
 D aspartate           4.3         22           1
 E glutamate           7.7         39           2
 F phenylalanine       5.3         27           1
 G glycine             4.1         21           1
 H histidine           2.8         14           1
 I isoleucine          5.3         27           1
 K lysine              7.7         39           2
 L leucine            10.8         55           2
 M methionine          2.8         14           2
 N asparagine          5.5         28           2
 P proline             5.7         29           2
 Q glutamine           3.7         19           1
 R arginine            5.5         28           2
 S serine              7.7         39           2
 T threonine           4.7         24           1
 V valine              7.3         37           2
 W tryptophan          1.2          6           1
 Y tyrosine            2.0         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tRNA methyltransferase 5 
TRMT12                0.018   homolog of yeast tRNA methyltransferase 12 
RAD54L                0.009   RAD54-like protein 
RAD54L                0.009   RAD54-like protein 
C1orf25               0.007   N2,N2-dimethylguanosine tRNA methyltransferase-like...
CHD6                  0.006   chromodomain helicase DNA binding protein 6 
SHROOM4               0.005   shroom family member 4 
CHD7                  0.005   chromodomain helicase DNA binding protein 7 
LOC729041             0.004   PREDICTED: similar to hCG2039305 
LOC729041             0.004   PREDICTED: similar to hCG2039305 
LOC729041             0.004   PREDICTED: similar to hCG2039305 
PKN1                  0.004   protein kinase N1 isoform 1 
PKN1                  0.004   protein kinase N1 isoform 2 
RNF40                 0.004   ring finger protein 40 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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