Guide to the Human Genome
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Name: TRMT12 Sequence: fasta or formatted (448aa) NCBI GI: 157388919
Description:

homolog of yeast tRNA methyltransferase 12

Referenced in:

tRNA Enzymes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         33           2
 C cysteine            2.7         12           2
 D aspartate           3.8         17           1
 E glutamate           6.7         30           2
 F phenylalanine       2.5         11           1
 G glycine             7.1         32           2
 H histidine           3.6         16           1
 I isoleucine          3.6         16           1
 K lysine              4.9         22           1
 L leucine            10.7         48           4
 M methionine          1.3          6           1
 N asparagine          3.8         17           2
 P proline             6.2         28           1
 Q glutamine           6.0         27           2
 R arginine            6.2         28           1
 S serine              5.4         24           2
 T threonine           4.2         19           2
 V valine              9.2         41           3
 W tryptophan          3.1         14           1
 Y tyrosine            1.6          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   homolog of yeast tRNA methyltransferase 12 
TRMT5                 0.020   tRNA methyltransferase 5 
TGS1                  0.012   trimethylguanosine synthase homolog 
CPM                   0.007   carboxypeptidase M precursor 
CPM                   0.007   carboxypeptidase M precursor 
CPM                   0.007   carboxypeptidase M precursor 
LOC100131908          0.006   PREDICTED: similar to forkhead box O6 
FOXO6                 0.006   PREDICTED: forkhead box protein O6 
DIDO1                 0.006   death inducer-obliterator 1 isoform c 
NLRP6                 0.006   NLR family, pyrin domain containing 6 
DIMT1L                0.006   dimethyladenosine transferase 
ITIH4                 0.004   inter-alpha (globulin) inhibitor H4 
OSBPL11               0.004   oxysterol binding protein-like 11 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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