Guide to the Human Genome
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Name: LOC729041 Sequence: fasta or formatted (219aa) NCBI GI: 113408590
Description:

PREDICTED: similar to hCG2039305

Referenced in:

Fatty Acid Oxidation and Ketone Bodies

Other entries for this name:
alt mRNA [219aa] PREDICTED: similar to hCG2039305
alt mRNA [219aa] PREDICTED: similar to hCG2039305
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5         12           1
 C cysteine            2.7          6           1
 D aspartate           5.9         13           1
 E glutamate           8.2         18           3
 F phenylalanine       4.1          9           1
 G glycine             7.8         17           2
 H histidine           0.9          2           1
 I isoleucine          6.4         14           1
 K lysine              5.9         13           2
 L leucine            11.0         24           2
 M methionine          1.4          3           1
 N asparagine          1.8          4           1
 P proline             5.9         13           1
 Q glutamine           4.6         10           1
 R arginine            2.3          5           1
 S serine              6.8         15           3
 T threonine           3.7          8           1
 V valine              9.1         20           2
 W tryptophan          1.8          4           1
 Y tyrosine            4.1          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG2039305 
LOC729041             1.000   PREDICTED: similar to hCG2039305 
LOC729041             1.000   PREDICTED: similar to hCG2039305 
FAAH                  0.334   fatty acid amide hydrolase 
LOC100293142          0.017   PREDICTED: similar to hCG2040019 
GRK4                  0.017   G protein-coupled receptor kinase 4 isoform gamma [H...
OR7E24                0.017   olfactory receptor, family 7, subfamily E, member 2...
ABCC2                 0.012   ATP-binding cassette, sub-family C (CFTR/MRP), member...
TRMT5                 0.009   tRNA methyltransferase 5 
FBXL4                 0.009   F-box and leucine-rich repeat protein 4 
GRK4                  0.009   G protein-coupled receptor kinase 4 isoform beta [Ho...
GRK4                  0.009   G protein-coupled receptor kinase 4 isoform alpha [H...
C14orf119             0.007   chromosome 14 open reading frame 119 
OR10A6                0.007   olfactory receptor, family 10, subfamily A, member 6...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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