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Search of human proteins with 9951920
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|9951920 paired box 5 [Homo sapiens]
(391 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|9951920 paired box 5 [Homo sapiens] 794 0.0
gi|34878701 paired box protein 2 isoform b [Homo sapiens] 544 e-155
gi|34878699 paired box protein 2 isoform a [Homo sapiens] 531 e-151
gi|34878716 paired box protein 2 isoform d [Homo sapiens] 511 e-145
gi|34878703 paired box protein 2 isoform e [Homo sapiens] 498 e-141
gi|34878709 paired box protein 2 isoform c [Homo sapiens] 457 e-129
gi|7524361 paired box 8 isoform PAX8B [Homo sapiens] 456 e-128
gi|5803117 paired box 8 isoform PAX8A [Homo sapiens] 390 e-108
gi|7524363 paired box 8 isoform PAX8C [Homo sapiens] 340 1e-93
gi|7669542 paired box 8 isoform PAX8E [Homo sapiens] 330 1e-90
gi|7524365 paired box 8 isoform PAX8D [Homo sapiens] 324 1e-88
gi|188219638 paired box 3 isoform PAX3i [Homo sapiens] 231 6e-61
gi|31563348 paired box 3 isoform PAX3g [Homo sapiens] 227 2e-59
gi|31563346 paired box 3 isoform PAX3h [Homo sapiens] 227 2e-59
gi|31563344 paired box 3 isoform PAX3e [Homo sapiens] 227 2e-59
gi|31563342 paired box 3 isoform PAX3d [Homo sapiens] 227 2e-59
gi|31563340 paired box 3 isoform PAX3 [Homo sapiens] 227 2e-59
gi|189083681 paired box gene 6 isoform a [Homo sapiens] 225 6e-59
gi|4505615 paired box gene 6 isoform a [Homo sapiens] 225 6e-59
gi|7524359 paired box 7 isoform 2 [Homo sapiens] 224 1e-58
gi|4505619 paired box 7 isoform 1 [Homo sapiens] 219 4e-57
gi|207029223 paired box 7 isoform 3 [Homo sapiens] 219 4e-57
gi|4580424 paired box gene 6 isoform b [Homo sapiens] 215 5e-56
gi|197276661 paired box 1 [Homo sapiens] 203 2e-52
gi|7524356 paired box 3 isoform PAX3b [Homo sapiens] 196 2e-50
gi|6654638 paired box 3 isoform PAX3a [Homo sapiens] 196 2e-50
gi|7242167 paired box 9 [Homo sapiens] 194 9e-50
gi|170784824 paired box 4 [Homo sapiens] 160 1e-39
gi|5902024 paired mesoderm homeobox 1 isoform pmx-1a [Homo sapiens] 42 0.001
gi|12707577 paired mesoderm homeobox 1 isoform pmx-1b [Homo sapi... 42 0.001
>gi|9951920 paired box 5 [Homo sapiens]
Length = 391
Score = 794 bits (2051), Expect = 0.0
Identities = 391/391 (100%), Positives = 391/391 (100%)
Query: 1 MDLEKNYPTPRTSRTGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 60
MDLEKNYPTPRTSRTGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
Sbjct: 1 MDLEKNYPTPRTSRTGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 60
Query: 61 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLA 120
SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLA
Sbjct: 61 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLA 120
Query: 121 ERVCDNDTVPSVSSINRIIRTKVQQPPNQPVPASSHSIVSTGSVTQVSSVSTDSAGSSYS 180
ERVCDNDTVPSVSSINRIIRTKVQQPPNQPVPASSHSIVSTGSVTQVSSVSTDSAGSSYS
Sbjct: 121 ERVCDNDTVPSVSSINRIIRTKVQQPPNQPVPASSHSIVSTGSVTQVSSVSTDSAGSSYS 180
Query: 181 ISGILGITSPSADTNKRKRDEGIQESPVPNGHSLPGRDFLRKQMRGDLFTQQQLEVLDRV 240
ISGILGITSPSADTNKRKRDEGIQESPVPNGHSLPGRDFLRKQMRGDLFTQQQLEVLDRV
Sbjct: 181 ISGILGITSPSADTNKRKRDEGIQESPVPNGHSLPGRDFLRKQMRGDLFTQQQLEVLDRV 240
Query: 241 FERQHYSDIFTTTEPIKPEQTTEYSAMASLAGGLDDMKANLASPTPADIGSSVPGPQSYP 300
FERQHYSDIFTTTEPIKPEQTTEYSAMASLAGGLDDMKANLASPTPADIGSSVPGPQSYP
Sbjct: 241 FERQHYSDIFTTTEPIKPEQTTEYSAMASLAGGLDDMKANLASPTPADIGSSVPGPQSYP 300
Query: 301 IVTGRDLASTTLPGYPPHVPPAGQGSYSAPTLTGMVPGSEFSGSPYSHPQYSSYNDSWRF 360
IVTGRDLASTTLPGYPPHVPPAGQGSYSAPTLTGMVPGSEFSGSPYSHPQYSSYNDSWRF
Sbjct: 301 IVTGRDLASTTLPGYPPHVPPAGQGSYSAPTLTGMVPGSEFSGSPYSHPQYSSYNDSWRF 360
Query: 361 PNPGLLGSPYYYSAAARGAAPPAAATAYDRH 391
PNPGLLGSPYYYSAAARGAAPPAAATAYDRH
Sbjct: 361 PNPGLLGSPYYYSAAARGAAPPAAATAYDRH 391
>gi|34878701 paired box protein 2 isoform b [Homo sapiens]
Length = 393
Score = 544 bits (1402), Expect = e-155
Identities = 278/383 (72%), Positives = 310/383 (80%), Gaps = 12/383 (3%)
Query: 16 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75
GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET
Sbjct: 16 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75
Query: 76 GSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPSVSSI 135
GSIKPGVIGGSKPKVATPKVV+KIAEYKRQNPTMFAWEIRDRLLAE +CDNDTVPSVSSI
Sbjct: 76 GSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSI 135
Query: 136 NRIIRTKVQQP-------PNQPVPASSHSIVSTGSVTQVSSVSTDSAGSSYSISGILGIT 188
NRIIRTKVQQP V A H+IV + + VSS S D G SYSI+GILGI
Sbjct: 136 NRIIRTKVQQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASNDPVG-SYSINGILGI- 193
Query: 189 SPSADTNKRKRDEGIQESPVPNGHSLPGRDFLRKQMRGDLFTQQQLEVLDRVFERQHYSD 248
P ++ KRKRDE + E VPNG S G D LRK +R D FTQQQLE LDRVFER Y D
Sbjct: 194 -PRSNGEKRKRDEDVSEGSVPNGDSQSGVDSLRKHLRADTFTQQQLEALDRVFERPSYPD 252
Query: 249 IFTTTEPIKPEQTTEYSAMASLAGGLDDMKANLASPTPADIGSSVPGPQSYPIVTGRDLA 308
+F +E IK EQ EYS + +L GLD++K++L++ T ++GS+V G Q+YP+VTGRD+A
Sbjct: 253 VFQASEHIKSEQGNEYS-LPALTPGLDEVKSSLSASTNPELGSNVSGTQTYPVVTGRDMA 311
Query: 309 STTLPGYPPHVPPAGQGSYSAPTLTGMVPGSEFSGSPYSHPQYSSYNDSWRFPNPGLLGS 368
STTLPGYPPHVPP GQGSY TL GMVPGSEFSG+PYSHPQY++YN++WRF NP LL S
Sbjct: 312 STTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTAYNEAWRFSNPALLSS 371
Query: 369 PYYYSAAARGAAPPAAATAYDRH 391
PYYYSAA R +AP AAA AYDRH
Sbjct: 372 PYYYSAAPR-SAPAAAAAAYDRH 393
>gi|34878699 paired box protein 2 isoform a [Homo sapiens]
Length = 416
Score = 531 bits (1368), Expect = e-151
Identities = 278/406 (68%), Positives = 310/406 (76%), Gaps = 35/406 (8%)
Query: 16 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75
GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET
Sbjct: 16 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75
Query: 76 GSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPSVSSI 135
GSIKPGVIGGSKPKVATPKVV+KIAEYKRQNPTMFAWEIRDRLLAE +CDNDTVPSVSSI
Sbjct: 76 GSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSI 135
Query: 136 NRIIRTKVQQP-------PNQPVPASSHSIVSTGSVTQVSSVSTDSAGSSYSISGILGIT 188
NRIIRTKVQQP V A H+IV + + VSS S D G SYSI+GILGI
Sbjct: 136 NRIIRTKVQQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASNDPVG-SYSINGILGI- 193
Query: 189 SPSADTNKRKRDE-----------------------GIQESPVPNGHSLPGRDFLRKQMR 225
P ++ KRKRDE + E VPNG S G D LRK +R
Sbjct: 194 -PRSNGEKRKRDEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDSLRKHLR 252
Query: 226 GDLFTQQQLEVLDRVFERQHYSDIFTTTEPIKPEQTTEYSAMASLAGGLDDMKANLASPT 285
D FTQQQLE LDRVFER Y D+F +E IK EQ EYS + +L GLD++K++L++ T
Sbjct: 253 ADTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYS-LPALTPGLDEVKSSLSAST 311
Query: 286 PADIGSSVPGPQSYPIVTGRDLASTTLPGYPPHVPPAGQGSYSAPTLTGMVPGSEFSGSP 345
++GS+V G Q+YP+VTGRD+ASTTLPGYPPHVPP GQGSY TL GMVPGSEFSG+P
Sbjct: 312 NPELGSNVSGTQTYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNP 371
Query: 346 YSHPQYSSYNDSWRFPNPGLLGSPYYYSAAARGAAPPAAATAYDRH 391
YSHPQY++YN++WRF NP LL SPYYYSAA R +AP AAA AYDRH
Sbjct: 372 YSHPQYTAYNEAWRFSNPALLSSPYYYSAAPR-SAPAAAAAAYDRH 416
>gi|34878716 paired box protein 2 isoform d [Homo sapiens]
Length = 408
Score = 511 bits (1316), Expect = e-145
Identities = 260/361 (72%), Positives = 291/361 (80%), Gaps = 11/361 (3%)
Query: 16 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75
GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET
Sbjct: 16 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75
Query: 76 GSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPSVSSI 135
GSIKPGVIGGSKPKVATPKVV+KIAEYKRQNPTMFAWEIRDRLLAE +CDNDTVPSVSSI
Sbjct: 76 GSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSI 135
Query: 136 NRIIRTKVQQP-------PNQPVPASSHSIVSTGSVTQVSSVSTDSAGSSYSISGILGIT 188
NRIIRTKVQQP V A H+IV + + VSS S D G SYSI+GILGI
Sbjct: 136 NRIIRTKVQQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASNDPVG-SYSINGILGI- 193
Query: 189 SPSADTNKRKRDEGIQESPVPNGHSLPGRDFLRKQMRGDLFTQQQLEVLDRVFERQHYSD 248
P ++ KRKRDE + E VPNG S G D LRK +R D FTQQQLE LDRVFER Y D
Sbjct: 194 -PRSNGEKRKRDEDVSEGSVPNGDSQSGVDSLRKHLRADTFTQQQLEALDRVFERPSYPD 252
Query: 249 IFTTTEPIKPEQTTEYSAMASLAGGLDDMKANLASPTPADIGSSVPGPQSYPIVTGRDLA 308
+F +E IK EQ EYS + +L GLD++K++L++ T ++GS+V G Q+YP+VTGRD+A
Sbjct: 253 VFQASEHIKSEQGNEYS-LPALTPGLDEVKSSLSASTNPELGSNVSGTQTYPVVTGRDMA 311
Query: 309 STTLPGYPPHVPPAGQGSYSAPTLTGMVPGSEFSGSPYSHPQYSSYNDSWRFPNPGLLGS 368
STTLPGYPPHVPP GQGSY TL GMVPGSEFSG+PYSHPQY++YN++WRF NP LL
Sbjct: 312 STTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTAYNEAWRFSNPALLMP 371
Query: 369 P 369
P
Sbjct: 372 P 372
>gi|34878703 paired box protein 2 isoform e [Homo sapiens]
Length = 431
Score = 498 bits (1282), Expect = e-141
Identities = 260/384 (67%), Positives = 291/384 (75%), Gaps = 34/384 (8%)
Query: 16 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75
GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET
Sbjct: 16 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75
Query: 76 GSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPSVSSI 135
GSIKPGVIGGSKPKVATPKVV+KIAEYKRQNPTMFAWEIRDRLLAE +CDNDTVPSVSSI
Sbjct: 76 GSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSI 135
Query: 136 NRIIRTKVQQP-------PNQPVPASSHSIVSTGSVTQVSSVSTDSAGSSYSISGILGIT 188
NRIIRTKVQQP V A H+IV + + VSS S D G SYSI+GILGI
Sbjct: 136 NRIIRTKVQQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASNDPVG-SYSINGILGI- 193
Query: 189 SPSADTNKRKRDE-----------------------GIQESPVPNGHSLPGRDFLRKQMR 225
P ++ KRKRDE + E VPNG S G D LRK +R
Sbjct: 194 -PRSNGEKRKRDEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDSLRKHLR 252
Query: 226 GDLFTQQQLEVLDRVFERQHYSDIFTTTEPIKPEQTTEYSAMASLAGGLDDMKANLASPT 285
D FTQQQLE LDRVFER Y D+F +E IK EQ EYS + +L GLD++K++L++ T
Sbjct: 253 ADTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYS-LPALTPGLDEVKSSLSAST 311
Query: 286 PADIGSSVPGPQSYPIVTGRDLASTTLPGYPPHVPPAGQGSYSAPTLTGMVPGSEFSGSP 345
++GS+V G Q+YP+VTGRD+ASTTLPGYPPHVPP GQGSY TL GMVPGSEFSG+P
Sbjct: 312 NPELGSNVSGTQTYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNP 371
Query: 346 YSHPQYSSYNDSWRFPNPGLLGSP 369
YSHPQY++YN++WRF NP LL P
Sbjct: 372 YSHPQYTAYNEAWRFSNPALLMPP 395
>gi|34878709 paired box protein 2 isoform c [Homo sapiens]
Length = 396
Score = 457 bits (1176), Expect = e-129
Identities = 237/329 (72%), Positives = 263/329 (79%), Gaps = 11/329 (3%)
Query: 16 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75
GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET
Sbjct: 16 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75
Query: 76 GSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPSVSSI 135
GSIKPGVIGGSKPKVATPKVV+KIAEYKRQNPTMFAWEIRDRLLAE +CDNDTVPSVSSI
Sbjct: 76 GSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSI 135
Query: 136 NRIIRTKVQQP-------PNQPVPASSHSIVSTGSVTQVSSVSTDSAGSSYSISGILGIT 188
NRIIRTKVQQP V A H+IV + + VSS S D G SYSI+GILGI
Sbjct: 136 NRIIRTKVQQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASNDPVG-SYSINGILGI- 193
Query: 189 SPSADTNKRKRDEGIQESPVPNGHSLPGRDFLRKQMRGDLFTQQQLEVLDRVFERQHYSD 248
P ++ KRKRDE + E VPNG S G D LRK +R D FTQQQLE LDRVFER Y D
Sbjct: 194 -PRSNGEKRKRDEDVSEGSVPNGDSQSGVDSLRKHLRADTFTQQQLEALDRVFERPSYPD 252
Query: 249 IFTTTEPIKPEQTTEYSAMASLAGGLDDMKANLASPTPADIGSSVPGPQSYPIVTGRDLA 308
+F +E IK EQ EYS + +L GLD++K++L++ T ++GS+V G Q+YP+VTGRD+A
Sbjct: 253 VFQASEHIKSEQGNEYS-LPALTPGLDEVKSSLSASTNPELGSNVSGTQTYPVVTGRDMA 311
Query: 309 STTLPGYPPHVPPAGQGSYSAPTLTGMVP 337
STTLPGYPPHVPP GQGSY TL GMVP
Sbjct: 312 STTLPGYPPHVPPTGQGSYPTSTLAGMVP 340
>gi|7524361 paired box 8 isoform PAX8B [Homo sapiens]
Length = 387
Score = 456 bits (1172), Expect = e-128
Identities = 232/384 (60%), Positives = 283/384 (73%), Gaps = 13/384 (3%)
Query: 14 RTGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYY 73
R+GHGG+NQLGG FVNGRPLP+VVRQRIV+LAHQGVRPCDISRQLRVSHGCVSKILGRYY
Sbjct: 7 RSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYY 66
Query: 74 ETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPSVS 133
ETGSI+PGVIGGSKPKVATPKVVEKI +YKRQNPTMFAWEIRDRLLAE VCDNDTVPSVS
Sbjct: 67 ETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVS 126
Query: 134 SINRIIRTKVQQPPNQPVP--------ASSHSIVSTGSVTQVSSVSTDSAGSSYSISGIL 185
SINRIIRTKVQQP N P+ + H+++ + +VT S +DS GS+YSI+G+L
Sbjct: 127 SINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTYSINGLL 186
Query: 186 GITSPSADTNKRKRDEGIQESPVPNGHSLPGRDFLRKQMRGDLFTQQQLEVLDRVFERQH 245
GI P +D KRK D+ Q+S + S RK +R D F+Q LE L+ FERQH
Sbjct: 187 GIAQPGSD--KRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECPFERQH 244
Query: 246 YSDIFTTTEPIKPEQTTEYSAMASLAGGLDDMKANLASPTPADIGSSVPGPQSYPIVTGR 305
Y + + + K EQ + L LDD KA L +P+ +G ++ Q+YP+V GR
Sbjct: 245 YPEAYASPSHTKGEQ--GLYPLPLLNSTLDDGKATL-TPSNTPLGRNLSTHQTYPVVAGR 301
Query: 306 DLASTTLPGYPPHVPPAGQGSYSAPTLTGMVPGSEFSGSPYSHPQYSSYNDSWRFPNPGL 365
++ TLPGYPPH+P +GQGSY++ + GMV GSE+SG+ Y H YSSY+++WRFPN L
Sbjct: 302 EMVGPTLPGYPPHIPTSGQGSYASSAIAGMVAGSEYSGNAYGHTPYSSYSEAWRFPNSSL 361
Query: 366 LGSPYYYSAAARGAAPPAAATAYD 389
L SPYYYS+ +R +APP ATA+D
Sbjct: 362 LSSPYYYSSTSRPSAPPTTATAFD 385
>gi|5803117 paired box 8 isoform PAX8A [Homo sapiens]
Length = 450
Score = 390 bits (1002), Expect = e-108
Identities = 230/447 (51%), Positives = 276/447 (61%), Gaps = 76/447 (17%)
Query: 14 RTGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYY 73
R+GHGG+NQLGG FVNGRPLP+VVRQRIV+LAHQGVRPCDISRQLRVSHGCVSKILGRYY
Sbjct: 7 RSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYY 66
Query: 74 ETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPSVS 133
ETGSI+PGVIGGSKPKVATPKVVEKI +YKRQNPTMFAWEIRDRLLAE VCDNDTVPSVS
Sbjct: 67 ETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVS 126
Query: 134 SINRIIRTKVQQPPNQPVP--------ASSHSIVSTGSVTQVSSVSTDSAGSSYSISGIL 185
SINRIIRTKVQQP N P+ + H+++ + +VT S +DS GS+YSI+G+L
Sbjct: 127 SINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTYSINGLL 186
Query: 186 GITSPSADTNKRKRDEGIQESPVPNGHSLPGRDFLRKQMRGDLFTQQQLEVLDRVFERQH 245
GI P +D KRK D+ Q+S + S RK +R D F+Q LE L+ FERQH
Sbjct: 187 GIAQPGSD--KRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECPFERQH 244
Query: 246 YSDIFTTTEPIKPEQTTEYSAMASLAGGLDDMKANLASPTPADIGSSVPGPQSYPIV--- 302
Y + + + K EQ + L LDD KA L +P+ +G ++ Q+YP+V
Sbjct: 245 YPEAYASPSHTKGEQ--GLYPLPLLNSTLDDGKATL-TPSNTPLGRNLSTHQTYPVVADP 301
Query: 303 ------------------TGRDLASTTL-------PGYPPH--VPPA--------GQGSY 327
T L+S+ G PP P A GQ
Sbjct: 302 HSPFAIKQETPEVSSSSSTPSSLSSSAFLDLQQVGSGVPPFNAFPHAASVYGQFTGQALL 361
Query: 328 S-----APTL--------------------TGMVPGSEFSGSPYSHPQYSSYNDSWRFPN 362
S PTL GMV GSE+SG+ Y H YSSY+++WRFPN
Sbjct: 362 SGREMVGPTLPGYPPHIPTSGQGSYASSAIAGMVAGSEYSGNAYGHTPYSSYSEAWRFPN 421
Query: 363 PGLLGSPYYYSAAARGAAPPAAATAYD 389
LL SPYYYS+ +R +APP ATA+D
Sbjct: 422 SSLLSSPYYYSSTSRPSAPPTTATAFD 448
>gi|7524363 paired box 8 isoform PAX8C [Homo sapiens]
Length = 398
Score = 340 bits (873), Expect = 1e-93
Identities = 186/317 (58%), Positives = 224/317 (70%), Gaps = 15/317 (4%)
Query: 14 RTGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYY 73
R+GHGG+NQLGG FVNGRPLP+VVRQRIV+LAHQGVRPCDISRQLRVSHGCVSKILGRYY
Sbjct: 7 RSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYY 66
Query: 74 ETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPSVS 133
ETGSI+PGVIGGSKPKVATPKVVEKI +YKRQNPTMFAWEIRDRLLAE VCDNDTVPSVS
Sbjct: 67 ETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVS 126
Query: 134 SINRIIRTKVQQPPNQPVP--------ASSHSIVSTGSVTQVSSVSTDSAGSSYSISGIL 185
SINRIIRTKVQQP N P+ + H+++ + +VT S +DS GS+YSI+G+L
Sbjct: 127 SINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTYSINGLL 186
Query: 186 GITSPSADTNKRKRDEGIQESPVPNGHSLPGRDFLRKQMRGDLFTQQQLEVLDRVFERQH 245
GI P +D KRK D+ Q+S + S RK +R D F+Q LE L+ FERQH
Sbjct: 187 GIAQPGSD--KRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECPFERQH 244
Query: 246 YSDIFTTTEPIKPEQTTEYSAMASLAGGLDDMKANLASPTPADIGSSVPGPQSYPIVTGR 305
Y + + + K EQ + L LDD KA L +P+ +G ++ Q+YP+V
Sbjct: 245 YPEAYASPSHTKGEQ--GLYPLPLLNSTLDDGKATL-TPSNTPLGRNLSTHQTYPVVAAP 301
Query: 306 D--LASTTLPGYPPHVP 320
+ S + PG P +P
Sbjct: 302 PFWICSKSAPGSRPSMP 318
>gi|7669542 paired box 8 isoform PAX8E [Homo sapiens]
Length = 287
Score = 330 bits (846), Expect = 1e-90
Identities = 176/282 (62%), Positives = 203/282 (71%), Gaps = 10/282 (3%)
Query: 14 RTGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYY 73
R+GHGG+NQLGG FVNGRPLP+VVRQRIV+LAHQGVRPCDISRQLRVSHGCVSKILGRYY
Sbjct: 7 RSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYY 66
Query: 74 ETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPSVS 133
ETGSI+PGVIGGSKPKVATPKVVEKI +YKRQNPTMFAWEIRDRLLAE VCDNDTVPSVS
Sbjct: 67 ETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVS 126
Query: 134 SINRIIRTKVQQPPNQPVP--------ASSHSIVSTGSVTQVSSVSTDSAGSSYSISGIL 185
SINRIIRTKVQQP N P+ + H+++ + +VT S +DS GS+YSI+G+L
Sbjct: 127 SINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTYSINGLL 186
Query: 186 GITSPSADTNKRKRDEGIQESPVPNGHSLPGRDFLRKQMRGDLFTQQQLEVLDRVFERQH 245
GI P +D KRK D+ Q+S + S RK +R D F+Q LE L+ FERQH
Sbjct: 187 GIAQPGSD--KRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECPFERQH 244
Query: 246 YSDIFTTTEPIKPEQTTEYSAMASLAGGLDDMKANLASPTPA 287
Y + + + K EQ AM ASPTPA
Sbjct: 245 YPEAYASPSHTKGEQEVNTLAMPMATPPTPPTARPGASPTPA 286
>gi|7524365 paired box 8 isoform PAX8D [Homo sapiens]
Length = 321
Score = 324 bits (830), Expect = 1e-88
Identities = 168/255 (65%), Positives = 195/255 (76%), Gaps = 10/255 (3%)
Query: 14 RTGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYY 73
R+GHGG+NQLGG FVNGRPLP+VVRQRIV+LAHQGVRPCDISRQLRVSHGCVSKILGRYY
Sbjct: 7 RSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYY 66
Query: 74 ETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPSVS 133
ETGSI+PGVIGGSKPKVATPKVVEKI +YKRQNPTMFAWEIRDRLLAE VCDNDTVPSVS
Sbjct: 67 ETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVS 126
Query: 134 SINRIIRTKVQQPPNQPVP--------ASSHSIVSTGSVTQVSSVSTDSAGSSYSISGIL 185
SINRIIRTKVQQP N P+ + H+++ + +VT S +DS GS+YSI+G+L
Sbjct: 127 SINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTYSINGLL 186
Query: 186 GITSPSADTNKRKRDEGIQESPVPNGHSLPGRDFLRKQMRGDLFTQQQLEVLDRVFERQH 245
GI P +D KRK D+ Q+S + S RK +R D F+Q LE L+ FERQH
Sbjct: 187 GIAQPGSD--KRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECPFERQH 244
Query: 246 YSDIFTTTEPIKPEQ 260
Y + + + K EQ
Sbjct: 245 YPEAYASPSHTKGEQ 259
>gi|188219638 paired box 3 isoform PAX3i [Homo sapiens]
Length = 483
Score = 231 bits (590), Expect = 6e-61
Identities = 152/374 (40%), Positives = 199/374 (53%), Gaps = 43/374 (11%)
Query: 7 YPTPRTSRTGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVS 66
+P ++ G G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVS
Sbjct: 25 FPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVS 84
Query: 67 KILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDN 126
KIL RY ETGSI+PG IGGSKPKV TP V +KI EYKR+NP MF+WEIRD+LL + VCD
Sbjct: 85 KILCRYQETGSIRPGAIGGSKPKVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDR 144
Query: 127 DTVPSVSSINRIIRTKVQQPPNQPVPASSHSIVSTGSVTQVSSVSTDSAGSSYSISGILG 186
+TVPSVSSI+RI+R+K + + + + +SI GIL
Sbjct: 145 NTVPSVSSISRILRSKFGKGEEEEAD------------LERKEAEESEKKAKHSIDGIL- 191
Query: 187 ITSPSADTNKRKRDEGIQESPVPNGHSLPGRDFLRKQMRG-DLFTQQQLEVLDRVFERQH 245
S + + DEG S + + LP RKQ R FT +QLE L+R FER H
Sbjct: 192 ----SERASAPQSDEG---SDIDSEPDLP---LKRKQRRSRTTFTAEQLEELERAFERTH 241
Query: 246 YSDIFTTTEPIKPEQTTEYSAMASLAGGLDDMKANLASPTPADIGSSVPG---PQSYPIV 302
Y DI+T E + + TE + + + +PG P + P +
Sbjct: 242 YPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMPTL 301
Query: 303 TGRDLASTTLPGYPPHVPPAGQGSYSA-------PTLT---GMVPGSEFSGSPYSHPQ-- 350
L+ T+ P +P A S P T +P + S S Y P
Sbjct: 302 PTYQLSETSY--QPTSIPQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDSSSAYCLPSTR 359
Query: 351 --YSSYNDSWRFPN 362
+SSY DS+ P+
Sbjct: 360 HGFSSYTDSFVPPS 373
>gi|31563348 paired box 3 isoform PAX3g [Homo sapiens]
Length = 403
Score = 227 bits (578), Expect = 2e-59
Identities = 152/375 (40%), Positives = 199/375 (53%), Gaps = 44/375 (11%)
Query: 7 YPTPRTSRTGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVS 66
+P ++ G G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVS
Sbjct: 25 FPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVS 84
Query: 67 KILGRYYETGSIKPGVIGGSKPK-VATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCD 125
KIL RY ETGSI+PG IGGSKPK V TP V +KI EYKR+NP MF+WEIRD+LL + VCD
Sbjct: 85 KILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCD 144
Query: 126 NDTVPSVSSINRIIRTKVQQPPNQPVPASSHSIVSTGSVTQVSSVSTDSAGSSYSISGIL 185
+TVPSVSSI+RI+R+K + + + + +SI GIL
Sbjct: 145 RNTVPSVSSISRILRSKFGKGEEEEAD------------LERKEAEESEKKAKHSIDGIL 192
Query: 186 GITSPSADTNKRKRDEGIQESPVPNGHSLPGRDFLRKQMRG-DLFTQQQLEVLDRVFERQ 244
S + + DEG S + + LP RKQ R FT +QLE L+R FER
Sbjct: 193 -----SERASAPQSDEG---SDIDSEPDLP---LKRKQRRSRTTFTAEQLEELERAFERT 241
Query: 245 HYSDIFTTTEPIKPEQTTEYSAMASLAGGLDDMKANLASPTPADIGSSVPG---PQSYPI 301
HY DI+T E + + TE + + + +PG P + P
Sbjct: 242 HYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMPT 301
Query: 302 VTGRDLASTTLPGYPPHVPPAGQGSYSA-------PTLT---GMVPGSEFSGSPYSHPQ- 350
+ L+ T+ P +P A S P T +P + S S Y P
Sbjct: 302 LPTYQLSETSY--QPTSIPQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDSSSAYCLPST 359
Query: 351 ---YSSYNDSWRFPN 362
+SSY DS+ P+
Sbjct: 360 RHGFSSYTDSFVPPS 374
>gi|31563346 paired box 3 isoform PAX3h [Homo sapiens]
Length = 407
Score = 227 bits (578), Expect = 2e-59
Identities = 152/375 (40%), Positives = 199/375 (53%), Gaps = 44/375 (11%)
Query: 7 YPTPRTSRTGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVS 66
+P ++ G G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVS
Sbjct: 25 FPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVS 84
Query: 67 KILGRYYETGSIKPGVIGGSKPK-VATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCD 125
KIL RY ETGSI+PG IGGSKPK V TP V +KI EYKR+NP MF+WEIRD+LL + VCD
Sbjct: 85 KILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCD 144
Query: 126 NDTVPSVSSINRIIRTKVQQPPNQPVPASSHSIVSTGSVTQVSSVSTDSAGSSYSISGIL 185
+TVPSVSSI+RI+R+K + + + + +SI GIL
Sbjct: 145 RNTVPSVSSISRILRSKFGKGEEEEAD------------LERKEAEESEKKAKHSIDGIL 192
Query: 186 GITSPSADTNKRKRDEGIQESPVPNGHSLPGRDFLRKQMRG-DLFTQQQLEVLDRVFERQ 244
S + + DEG S + + LP RKQ R FT +QLE L+R FER
Sbjct: 193 -----SERASAPQSDEG---SDIDSEPDLP---LKRKQRRSRTTFTAEQLEELERAFERT 241
Query: 245 HYSDIFTTTEPIKPEQTTEYSAMASLAGGLDDMKANLASPTPADIGSSVPG---PQSYPI 301
HY DI+T E + + TE + + + +PG P + P
Sbjct: 242 HYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMPT 301
Query: 302 VTGRDLASTTLPGYPPHVPPAGQGSYSA-------PTLT---GMVPGSEFSGSPYSHPQ- 350
+ L+ T+ P +P A S P T +P + S S Y P
Sbjct: 302 LPTYQLSETSY--QPTSIPQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDSSSAYCLPST 359
Query: 351 ---YSSYNDSWRFPN 362
+SSY DS+ P+
Sbjct: 360 RHGFSSYTDSFVPPS 374
>gi|31563344 paired box 3 isoform PAX3e [Homo sapiens]
Length = 505
Score = 227 bits (578), Expect = 2e-59
Identities = 152/375 (40%), Positives = 199/375 (53%), Gaps = 44/375 (11%)
Query: 7 YPTPRTSRTGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVS 66
+P ++ G G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVS
Sbjct: 25 FPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVS 84
Query: 67 KILGRYYETGSIKPGVIGGSKPK-VATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCD 125
KIL RY ETGSI+PG IGGSKPK V TP V +KI EYKR+NP MF+WEIRD+LL + VCD
Sbjct: 85 KILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCD 144
Query: 126 NDTVPSVSSINRIIRTKVQQPPNQPVPASSHSIVSTGSVTQVSSVSTDSAGSSYSISGIL 185
+TVPSVSSI+RI+R+K + + + + +SI GIL
Sbjct: 145 RNTVPSVSSISRILRSKFGKGEEEEAD------------LERKEAEESEKKAKHSIDGIL 192
Query: 186 GITSPSADTNKRKRDEGIQESPVPNGHSLPGRDFLRKQMRG-DLFTQQQLEVLDRVFERQ 244
S + + DEG S + + LP RKQ R FT +QLE L+R FER
Sbjct: 193 -----SERASAPQSDEG---SDIDSEPDLP---LKRKQRRSRTTFTAEQLEELERAFERT 241
Query: 245 HYSDIFTTTEPIKPEQTTEYSAMASLAGGLDDMKANLASPTPADIGSSVPG---PQSYPI 301
HY DI+T E + + TE + + + +PG P + P
Sbjct: 242 HYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMPT 301
Query: 302 VTGRDLASTTLPGYPPHVPPAGQGSYSA-------PTLT---GMVPGSEFSGSPYSHPQ- 350
+ L+ T+ P +P A S P T +P + S S Y P
Sbjct: 302 LPTYQLSETSY--QPTSIPQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDSSSAYCLPST 359
Query: 351 ---YSSYNDSWRFPN 362
+SSY DS+ P+
Sbjct: 360 RHGFSSYTDSFVPPS 374
>gi|31563342 paired box 3 isoform PAX3d [Homo sapiens]
Length = 484
Score = 227 bits (578), Expect = 2e-59
Identities = 152/375 (40%), Positives = 199/375 (53%), Gaps = 44/375 (11%)
Query: 7 YPTPRTSRTGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVS 66
+P ++ G G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVS
Sbjct: 25 FPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVS 84
Query: 67 KILGRYYETGSIKPGVIGGSKPK-VATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCD 125
KIL RY ETGSI+PG IGGSKPK V TP V +KI EYKR+NP MF+WEIRD+LL + VCD
Sbjct: 85 KILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCD 144
Query: 126 NDTVPSVSSINRIIRTKVQQPPNQPVPASSHSIVSTGSVTQVSSVSTDSAGSSYSISGIL 185
+TVPSVSSI+RI+R+K + + + + +SI GIL
Sbjct: 145 RNTVPSVSSISRILRSKFGKGEEEEAD------------LERKEAEESEKKAKHSIDGIL 192
Query: 186 GITSPSADTNKRKRDEGIQESPVPNGHSLPGRDFLRKQMRG-DLFTQQQLEVLDRVFERQ 244
S + + DEG S + + LP RKQ R FT +QLE L+R FER
Sbjct: 193 -----SERASAPQSDEG---SDIDSEPDLP---LKRKQRRSRTTFTAEQLEELERAFERT 241
Query: 245 HYSDIFTTTEPIKPEQTTEYSAMASLAGGLDDMKANLASPTPADIGSSVPG---PQSYPI 301
HY DI+T E + + TE + + + +PG P + P
Sbjct: 242 HYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMPT 301
Query: 302 VTGRDLASTTLPGYPPHVPPAGQGSYSA-------PTLT---GMVPGSEFSGSPYSHPQ- 350
+ L+ T+ P +P A S P T +P + S S Y P
Sbjct: 302 LPTYQLSETSY--QPTSIPQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDSSSAYCLPST 359
Query: 351 ---YSSYNDSWRFPN 362
+SSY DS+ P+
Sbjct: 360 RHGFSSYTDSFVPPS 374
>gi|31563340 paired box 3 isoform PAX3 [Homo sapiens]
Length = 479
Score = 227 bits (578), Expect = 2e-59
Identities = 152/375 (40%), Positives = 199/375 (53%), Gaps = 44/375 (11%)
Query: 7 YPTPRTSRTGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVS 66
+P ++ G G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVS
Sbjct: 25 FPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVS 84
Query: 67 KILGRYYETGSIKPGVIGGSKPK-VATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCD 125
KIL RY ETGSI+PG IGGSKPK V TP V +KI EYKR+NP MF+WEIRD+LL + VCD
Sbjct: 85 KILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCD 144
Query: 126 NDTVPSVSSINRIIRTKVQQPPNQPVPASSHSIVSTGSVTQVSSVSTDSAGSSYSISGIL 185
+TVPSVSSI+RI+R+K + + + + +SI GIL
Sbjct: 145 RNTVPSVSSISRILRSKFGKGEEEEAD------------LERKEAEESEKKAKHSIDGIL 192
Query: 186 GITSPSADTNKRKRDEGIQESPVPNGHSLPGRDFLRKQMRG-DLFTQQQLEVLDRVFERQ 244
S + + DEG S + + LP RKQ R FT +QLE L+R FER
Sbjct: 193 -----SERASAPQSDEG---SDIDSEPDLP---LKRKQRRSRTTFTAEQLEELERAFERT 241
Query: 245 HYSDIFTTTEPIKPEQTTEYSAMASLAGGLDDMKANLASPTPADIGSSVPG---PQSYPI 301
HY DI+T E + + TE + + + +PG P + P
Sbjct: 242 HYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMPT 301
Query: 302 VTGRDLASTTLPGYPPHVPPAGQGSYSA-------PTLT---GMVPGSEFSGSPYSHPQ- 350
+ L+ T+ P +P A S P T +P + S S Y P
Sbjct: 302 LPTYQLSETSY--QPTSIPQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDSSSAYCLPST 359
Query: 351 ---YSSYNDSWRFPN 362
+SSY DS+ P+
Sbjct: 360 RHGFSSYTDSFVPPS 374
>gi|189083681 paired box gene 6 isoform a [Homo sapiens]
Length = 422
Score = 225 bits (573), Expect = 6e-59
Identities = 125/248 (50%), Positives = 158/248 (63%), Gaps = 22/248 (8%)
Query: 14 RTGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYY 73
+ H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+VS+GCVSKILGRYY
Sbjct: 2 QNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRYY 61
Query: 74 ETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPSVS 133
ETGSI+P IGGSKP+VATP+VV KIA+YKR+ P++FAWEIRDRLL+E VC ND +PSVS
Sbjct: 62 ETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPSVS 121
Query: 134 SINRIIRTKVQQPPNQPVPASSHSIVSTGSVTQVSSVSTDSAGSSYSISGILGITSPSAD 193
SINR++R + + + + G ++ ++ + G + P
Sbjct: 122 SINRVLRN---------LASEKQQMGADGMYDKLRMLNGQTGSWGTRPGWYPGTSVPGQP 172
Query: 194 TNKR-KRDEGIQESPVPNGHSLPGRDFLRKQMRGDL----------FTQQQLEVLDRVFE 242
T ++ EG E+ N S G D QMR L FTQ+Q+E L++ FE
Sbjct: 173 TQDGCQQQEGGGEN--TNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALEKEFE 230
Query: 243 RQHYSDIF 250
R HY D+F
Sbjct: 231 RTHYPDVF 238
>gi|4505615 paired box gene 6 isoform a [Homo sapiens]
Length = 422
Score = 225 bits (573), Expect = 6e-59
Identities = 125/248 (50%), Positives = 158/248 (63%), Gaps = 22/248 (8%)
Query: 14 RTGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYY 73
+ H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+VS+GCVSKILGRYY
Sbjct: 2 QNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRYY 61
Query: 74 ETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPSVS 133
ETGSI+P IGGSKP+VATP+VV KIA+YKR+ P++FAWEIRDRLL+E VC ND +PSVS
Sbjct: 62 ETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPSVS 121
Query: 134 SINRIIRTKVQQPPNQPVPASSHSIVSTGSVTQVSSVSTDSAGSSYSISGILGITSPSAD 193
SINR++R + + + + G ++ ++ + G + P
Sbjct: 122 SINRVLRN---------LASEKQQMGADGMYDKLRMLNGQTGSWGTRPGWYPGTSVPGQP 172
Query: 194 TNKR-KRDEGIQESPVPNGHSLPGRDFLRKQMRGDL----------FTQQQLEVLDRVFE 242
T ++ EG E+ N S G D QMR L FTQ+Q+E L++ FE
Sbjct: 173 TQDGCQQQEGGGEN--TNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALEKEFE 230
Query: 243 RQHYSDIF 250
R HY D+F
Sbjct: 231 RTHYPDVF 238
>gi|7524359 paired box 7 isoform 2 [Homo sapiens]
Length = 518
Score = 224 bits (570), Expect = 1e-58
Identities = 148/369 (40%), Positives = 192/369 (52%), Gaps = 41/369 (11%)
Query: 7 YPTPRTSRTGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVS 66
+P ++ G G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVS
Sbjct: 25 FPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVS 84
Query: 67 KILGRYYETGSIKPGVIGGSKPK-VATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCD 125
KIL RY ETGSI+PG IGGSKP+ VATP V +KI EYKR+NP MF+WEIRDRLL + CD
Sbjct: 85 KILCRYQETGSIRPGAIGGSKPRQVATPDVEKKIEEYKRENPGMFSWEIRDRLLKDGHCD 144
Query: 126 NDTVPSVSSINRIIRTKVQQPPNQPVPASSHSIVSTGSVTQVSSVSTDSAGSSYSISGIL 185
TVPSVSSI+R++R K + + + +SI GIL
Sbjct: 145 RSTVPSVSSISRVLRIKFGKKEEEDEADKKE--------------DDGEKKAKHSIDGIL 190
Query: 186 GITSPSADTNKRKRDEGIQESPVPNGHSLPGRDFLRKQMRG-DLFTQQQLEVLDRVFERQ 244
G + DEG S V + LP RKQ R FT +QLE L++ FER
Sbjct: 191 G-------DKGNRLDEG---SDVESEPDLP---LKRKQRRSRTTFTAEQLEELEKAFERT 237
Query: 245 HYSDIFTTTEPIKPEQTTEYSAMASLAGGLDDMKANLASPTPADIGSSVPG---PQSYPI 301
HY DI+T E + + TE + + + A +PG P P
Sbjct: 238 HYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNHLLPGGFPPTGMPT 297
Query: 302 VTGRDLASTTLP--------GYPPHVP-PAGQGSYSAPTLTGMVPGSEFSGSPYSHPQYS 352
+ L +T P G H P P + L ++ S + + +S
Sbjct: 298 LPPYQLPDSTYPTTTISQDGGSTVHRPQPLPPSTMHQGGLAAAAAAADTSSAYGARHSFS 357
Query: 353 SYNDSWRFP 361
SY+DS+ P
Sbjct: 358 SYSDSFMNP 366
>gi|4505619 paired box 7 isoform 1 [Homo sapiens]
Length = 520
Score = 219 bits (557), Expect = 4e-57
Identities = 148/371 (39%), Positives = 192/371 (51%), Gaps = 43/371 (11%)
Query: 7 YPTPRTSRTGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVS 66
+P ++ G G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVS
Sbjct: 25 FPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVS 84
Query: 67 KILGRYYETGSIKPGVIGGSKPK-VATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCD 125
KIL RY ETGSI+PG IGGSKP+ VATP V +KI EYKR+NP MF+WEIRDRLL + CD
Sbjct: 85 KILCRYQETGSIRPGAIGGSKPRQVATPDVEKKIEEYKRENPGMFSWEIRDRLLKDGHCD 144
Query: 126 NDTVPS--VSSINRIIRTKVQQPPNQPVPASSHSIVSTGSVTQVSSVSTDSAGSSYSISG 183
TVPS VSSI+R++R K + + + +SI G
Sbjct: 145 RSTVPSGLVSSISRVLRIKFGKKEEEDEADKKE--------------DDGEKKAKHSIDG 190
Query: 184 ILGITSPSADTNKRKRDEGIQESPVPNGHSLPGRDFLRKQMRG-DLFTQQQLEVLDRVFE 242
ILG + DEG S V + LP RKQ R FT +QLE L++ FE
Sbjct: 191 ILG-------DKGNRLDEG---SDVESEPDLP---LKRKQRRSRTTFTAEQLEELEKAFE 237
Query: 243 RQHYSDIFTTTEPIKPEQTTEYSAMASLAGGLDDMKANLASPTPADIGSSVPG---PQSY 299
R HY DI+T E + + TE + + + A +PG P
Sbjct: 238 RTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNHLLPGGFPPTGM 297
Query: 300 PIVTGRDLASTTLP--------GYPPHVP-PAGQGSYSAPTLTGMVPGSEFSGSPYSHPQ 350
P + L +T P G H P P + L ++ S + +
Sbjct: 298 PTLPPYQLPDSTYPTTTISQDGGSTVHRPQPLPPSTMHQGGLAAAAAAADTSSAYGARHS 357
Query: 351 YSSYNDSWRFP 361
+SSY+DS+ P
Sbjct: 358 FSSYSDSFMNP 368
>gi|207029223 paired box 7 isoform 3 [Homo sapiens]
Length = 505
Score = 219 bits (557), Expect = 4e-57
Identities = 148/371 (39%), Positives = 192/371 (51%), Gaps = 43/371 (11%)
Query: 7 YPTPRTSRTGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVS 66
+P ++ G G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVS
Sbjct: 25 FPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVS 84
Query: 67 KILGRYYETGSIKPGVIGGSKPK-VATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCD 125
KIL RY ETGSI+PG IGGSKP+ VATP V +KI EYKR+NP MF+WEIRDRLL + CD
Sbjct: 85 KILCRYQETGSIRPGAIGGSKPRQVATPDVEKKIEEYKRENPGMFSWEIRDRLLKDGHCD 144
Query: 126 NDTVPS--VSSINRIIRTKVQQPPNQPVPASSHSIVSTGSVTQVSSVSTDSAGSSYSISG 183
TVPS VSSI+R++R K + + + +SI G
Sbjct: 145 RSTVPSGLVSSISRVLRIKFGKKEEEDEADKKE--------------DDGEKKAKHSIDG 190
Query: 184 ILGITSPSADTNKRKRDEGIQESPVPNGHSLPGRDFLRKQMRG-DLFTQQQLEVLDRVFE 242
ILG + DEG S V + LP RKQ R FT +QLE L++ FE
Sbjct: 191 ILG-------DKGNRLDEG---SDVESEPDLP---LKRKQRRSRTTFTAEQLEELEKAFE 237
Query: 243 RQHYSDIFTTTEPIKPEQTTEYSAMASLAGGLDDMKANLASPTPADIGSSVPG---PQSY 299
R HY DI+T E + + TE + + + A +PG P
Sbjct: 238 RTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNHLLPGGFPPTGM 297
Query: 300 PIVTGRDLASTTLP--------GYPPHVP-PAGQGSYSAPTLTGMVPGSEFSGSPYSHPQ 350
P + L +T P G H P P + L ++ S + +
Sbjct: 298 PTLPPYQLPDSTYPTTTISQDGGSTVHRPQPLPPSTMHQGGLAAAAAAADTSSAYGARHS 357
Query: 351 YSSYNDSWRFP 361
+SSY+DS+ P
Sbjct: 358 FSSYSDSFMNP 368
>gi|4580424 paired box gene 6 isoform b [Homo sapiens]
Length = 436
Score = 215 bits (548), Expect = 5e-56
Identities = 125/262 (47%), Positives = 158/262 (60%), Gaps = 36/262 (13%)
Query: 14 RTGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLR-------------- 59
+ H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+
Sbjct: 2 QNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTHADAKVQVLDNQN 61
Query: 60 VSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLL 119
VS+GCVSKILGRYYETGSI+P IGGSKP+VATP+VV KIA+YKR+ P++FAWEIRDRLL
Sbjct: 62 VSNGCVSKILGRYYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLL 121
Query: 120 AERVCDNDTVPSVSSINRIIRTKVQQPPNQPVPASSHSIVSTGSVTQVSSVSTDSAGSSY 179
+E VC ND +PSVSSINR++R + + + + G ++ ++ +
Sbjct: 122 SEGVCTNDNIPSVSSINRVLRN---------LASEKQQMGADGMYDKLRMLNGQTGSWGT 172
Query: 180 SISGILGITSPSADTNKR-KRDEGIQESPVPNGHSLPGRDFLRKQMRGDL---------- 228
G + P T ++ EG E+ N S G D QMR L
Sbjct: 173 RPGWYPGTSVPGQPTQDGCQQQEGGGEN--TNSISSNGEDSDEAQMRLQLKRKLQRNRTS 230
Query: 229 FTQQQLEVLDRVFERQHYSDIF 250
FTQ+Q+E L++ FER HY D+F
Sbjct: 231 FTQEQIEALEKEFERTHYPDVF 252
>gi|197276661 paired box 1 [Homo sapiens]
Length = 534
Score = 203 bits (516), Expect = 2e-52
Identities = 116/227 (51%), Positives = 140/227 (61%), Gaps = 29/227 (12%)
Query: 10 PRTSRTGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKIL 69
P +G VNQLGGVFVNGRPLP+ +R RIVELA G+RPCDISRQLRVSHGCVSKIL
Sbjct: 92 PLAMEQTYGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKIL 151
Query: 70 GRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTV 129
RY ETGSI PG IGGSKP+V TP VV+ I +YK+ +P +FAWEIRDRLLA+ VCD V
Sbjct: 152 ARYNETGSILPGAIGGSKPRVTTPNVVKHIRDYKQGDPGIFAWEIRDRLLADGVCDKYNV 211
Query: 130 PSVSSINRIIRTKV------------QQPPNQPVPASSH--------SIVSTGSVTQVSS 169
PSVSSI+RI+R K+ +QPP+QP +H + TG+
Sbjct: 212 PSVSSISRILRNKIGSLAQPGPYEASKQPPSQPTLPYNHIYQYPYPSPVSPTGAKMGSHP 271
Query: 170 VSTDSAG---------SSYSISGILGITSPSADTNKRKRDEGIQESP 207
+AG S++S+S ILGI + T EG SP
Sbjct: 272 GVPGTAGHVSIPRSWPSAHSVSNILGIRTFMEQTGALAGSEGTAYSP 318
>gi|7524356 paired box 3 isoform PAX3b [Homo sapiens]
Length = 206
Score = 196 bits (499), Expect = 2e-50
Identities = 95/137 (69%), Positives = 114/137 (83%), Gaps = 1/137 (0%)
Query: 7 YPTPRTSRTGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVS 66
+P ++ G G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVS
Sbjct: 25 FPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVS 84
Query: 67 KILGRYYETGSIKPGVIGGSKPK-VATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCD 125
KIL RY ETGSI+PG IGGSKPK V TP V +KI EYKR+NP MF+WEIRD+LL + VCD
Sbjct: 85 KILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCD 144
Query: 126 NDTVPSVSSINRIIRTK 142
+TVPSVSSI+RI+R+K
Sbjct: 145 RNTVPSVSSISRILRSK 161
>gi|6654638 paired box 3 isoform PAX3a [Homo sapiens]
Length = 215
Score = 196 bits (499), Expect = 2e-50
Identities = 95/137 (69%), Positives = 114/137 (83%), Gaps = 1/137 (0%)
Query: 7 YPTPRTSRTGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVS 66
+P ++ G G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVS
Sbjct: 25 FPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVS 84
Query: 67 KILGRYYETGSIKPGVIGGSKPK-VATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCD 125
KIL RY ETGSI+PG IGGSKPK V TP V +KI EYKR+NP MF+WEIRD+LL + VCD
Sbjct: 85 KILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCD 144
Query: 126 NDTVPSVSSINRIIRTK 142
+TVPSVSSI+RI+R+K
Sbjct: 145 RNTVPSVSSISRILRSK 161
>gi|7242167 paired box 9 [Homo sapiens]
Length = 341
Score = 194 bits (494), Expect = 9e-50
Identities = 108/201 (53%), Positives = 128/201 (63%), Gaps = 29/201 (14%)
Query: 18 GGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGS 77
G VNQLGGVFVNGRPLP+ +R RIVELA G+RPCDISRQLRVSHGCVSKIL RY ETGS
Sbjct: 6 GEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNETGS 65
Query: 78 IKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPSVSSINR 137
I PG IGGSKP+V TP VV+ I YK+++P +FAWEIRDRLLA+ VCD VPSVSSI+R
Sbjct: 66 ILPGAIGGSKPRVTTPTVVKHIRTYKQRDPGIFAWEIRDRLLADGVCDKYNVPSVSSISR 125
Query: 138 IIRTKV--------------QQPPNQPVPASSHSIVSTGSVTQVSSVSTDSAG------- 176
I+R K+ QP QP +H +T ++ G
Sbjct: 126 ILRNKIGNLAQQGHYDSYKQHQPTPQPALPYNHIYSYPSPITAAAAKVPTPPGVPAIPGS 185
Query: 177 --------SSYSISGILGITS 189
SS+S++ ILGI S
Sbjct: 186 VAMPRTWPSSHSVTDILGIRS 206
>gi|170784824 paired box 4 [Homo sapiens]
Length = 343
Score = 160 bits (406), Expect = 1e-39
Identities = 78/121 (64%), Positives = 97/121 (80%)
Query: 20 VNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIK 79
+NQLGG+FVNGRPLP RQ+IV LA G+RPCDISR L+VS+GCVSKILGRYY TG ++
Sbjct: 1 MNQLGGLFVNGRPLPLDTRQQIVRLAVSGMRPCDISRILKVSNGCVSKILGRYYRTGVLE 60
Query: 80 PGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPSVSSINRII 139
P IGGSKP++ATP VV +IA+ K + P +FAWEI+ +L AE +C D PSVSSINR++
Sbjct: 61 PKGIGGSKPRLATPPVVARIAQLKGECPALFAWEIQRQLCAEGLCTQDKTPSVSSINRVL 120
Query: 140 R 140
R
Sbjct: 121 R 121
>gi|5902024 paired mesoderm homeobox 1 isoform pmx-1a [Homo sapiens]
Length = 217
Score = 42.0 bits (97), Expect = 0.001
Identities = 34/119 (28%), Positives = 52/119 (43%), Gaps = 17/119 (14%)
Query: 162 GSVTQVSSVSTDSAGSSYSISGILGI------TSPSADTNKRKRDEGIQESP-VPNGHSL 214
G + ++ T A ++S+S +L + + AD N + + ESP + +G
Sbjct: 17 GRLDSPGNLDTLQAKKNFSVSHLLDLEEAGDMVAAQADENVGEAGRSLLESPGLTSGSDT 76
Query: 215 PGRDF---------LRKQMRG-DLFTQQQLEVLDRVFERQHYSDIFTTTEPIKPEQTTE 263
P +D RKQ R F QL+ L+RVFER HY D F + + TE
Sbjct: 77 PQQDNDQLNSEEKKKRKQRRNRTTFNSSQLQALERVFERTHYPDAFVREDLARRVNLTE 135
>gi|12707577 paired mesoderm homeobox 1 isoform pmx-1b [Homo
sapiens]
Length = 245
Score = 42.0 bits (97), Expect = 0.001
Identities = 34/119 (28%), Positives = 52/119 (43%), Gaps = 17/119 (14%)
Query: 162 GSVTQVSSVSTDSAGSSYSISGILGI------TSPSADTNKRKRDEGIQESP-VPNGHSL 214
G + ++ T A ++S+S +L + + AD N + + ESP + +G
Sbjct: 17 GRLDSPGNLDTLQAKKNFSVSHLLDLEEAGDMVAAQADENVGEAGRSLLESPGLTSGSDT 76
Query: 215 PGRDF---------LRKQMRG-DLFTQQQLEVLDRVFERQHYSDIFTTTEPIKPEQTTE 263
P +D RKQ R F QL+ L+RVFER HY D F + + TE
Sbjct: 77 PQQDNDQLNSEEKKKRKQRRNRTTFNSSQLQALERVFERTHYPDAFVREDLARRVNLTE 135
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.131 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,779,528
Number of Sequences: 37866
Number of extensions: 964353
Number of successful extensions: 3510
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 168
Number of HSP's that attempted gapping in prelim test: 3123
Number of HSP's gapped (non-prelim): 510
length of query: 391
length of database: 18,247,518
effective HSP length: 104
effective length of query: 287
effective length of database: 14,309,454
effective search space: 4106813298
effective search space used: 4106813298
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.