Guide to the Human Genome
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Name: PAX8 Sequence: fasta or formatted (321aa) NCBI GI: 7524365
Description:

paired box 8 isoform PAX8D

Referenced in:

Homeobox and Related Proteins

Other entries for this name:
alt prot [450aa] paired box 8 isoform PAX8A
alt prot [387aa] paired box 8 isoform PAX8B
alt prot [398aa] paired box 8 isoform PAX8C
alt prot [287aa] paired box 8 isoform PAX8E
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2         20           2
 C cysteine            2.5          8           1
 D aspartate           5.3         17           2
 E glutamate           4.0         13           1
 F phenylalanine       1.6          5           1
 G glycine             7.8         25           2
 H histidine           3.4         11           2
 I isoleucine          4.7         15           2
 K lysine              3.7         12           1
 L leucine             6.2         20           2
 M methionine          2.2          7           1
 N asparagine          2.8          9           1
 P proline            11.8         38           2
 Q glutamine           5.0         16           2
 R arginine            7.2         23           1
 S serine             10.9         35           4
 T threonine           5.6         18           1
 V valine              5.6         18           2
 W tryptophan          1.6          5           2
 Y tyrosine            1.9          6           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   paired box 8 isoform PAX8D 
PAX8                  0.846   paired box 8 isoform PAX8E 
PAX8                  0.815   paired box 8 isoform PAX8C 
PAX8                  0.784   paired box 8 isoform PAX8B 
PAX8                  0.784   paired box 8 isoform PAX8A 
PAX2                  0.509   paired box protein 2 isoform d 
PAX2                  0.509   paired box protein 2 isoform b 
PAX2                  0.509   paired box protein 2 isoform c 
PAX2                  0.494   paired box protein 2 isoform a 
PAX2                  0.494   paired box protein 2 isoform e 
PAX5                  0.461   paired box 5 
PAX6                  0.304   paired box gene 6 isoform a 
PAX6                  0.304   paired box gene 6 isoform a 
PAX6                  0.290   paired box gene 6 isoform b 
PAX3                  0.289   paired box 3 isoform PAX3i 
PAX3                  0.281   paired box 3 isoform PAX3g 
PAX3                  0.281   paired box 3 isoform PAX3h 
PAX3                  0.281   paired box 3 isoform PAX3e 
PAX3                  0.281   paired box 3 isoform PAX3d 
PAX3                  0.281   paired box 3 isoform PAX3 
PAX7                  0.278   paired box 7 isoform 2 
PAX7                  0.270   paired box 7 isoform 1 
PAX7                  0.270   paired box 7 isoform 3 
PAX1                  0.261   paired box 1 
PAX9                  0.261   paired box 9 
PAX3                  0.256   paired box 3 isoform PAX3b 
PAX3                  0.256   paired box 3 isoform PAX3a 
PAX4                  0.215   paired box 4 
ALX4                  0.025   aristaless-like homeobox 4 
SRRM1                 0.022   serine/arginine repetitive matrix 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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