Guide to the Human Genome
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Name: CALCB Sequence: fasta or formatted (127aa) NCBI GI: 9945304
Description:

calcitonin-related polypeptide, beta

Referenced in:

Pancreas and Insulin
Peptide and Protein G-coupled Signals

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.4         17           2
 C cysteine            1.6          2           1
 D aspartate           3.1          4           1
 E glutamate           3.9          5           1
 F phenylalanine       4.7          6           1
 G glycine             6.3          8           2
 H histidine           0.8          1           1
 I isoleucine          0.8          1           1
 K lysine              5.5          7           1
 L leucine            12.6         16           3
 M methionine          2.4          3           1
 N asparagine          2.4          3           1
 P proline             3.9          5           1
 Q glutamine           7.1          9           1
 R arginine            7.9         10           4
 S serine             11.8         15           3
 T threonine           4.7          6           1
 V valine              5.5          7           1
 W tryptophan          0.0          0           0
 Y tyrosine            1.6          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   calcitonin-related polypeptide, beta 
CALCA                 0.859   calcitonin isoform CGRP preproprotein 
CALCA                 0.473   calcitonin isoform CALCA preproprotein 
CALCA                 0.473   calcitonin isoform CALCA preproprotein 
IAPP                  0.095   islet amyloid polypeptide precursor 
ANAPC7                0.023   anaphase-promoting complex subunit 7 isoform b [Hom...
ANAPC7                0.023   anaphase-promoting complex subunit 7 isoform a [Hom...
ADM                   0.014   adrenomedullin 
MAGED1                0.014   melanoma antigen family D, 1 isoform a 
MYH3                  0.014   myosin, heavy chain 3, skeletal muscle, embryonic [H...
CREBBP                0.009   CREB binding protein isoform b 
CREBBP                0.009   CREB binding protein isoform a 
LOC100292757          0.009   PREDICTED: hypothetical protein 
LOC100291505          0.009   PREDICTED: hypothetical protein XP_002347172 
LOC100288189          0.009   PREDICTED: hypothetical protein XP_002343065 
LOC100131773          0.009   PREDICTED: similar to mCG116201 
MYH1                  0.009   myosin, heavy chain 1, skeletal muscle, adult [Homo...
MYH2                  0.009   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH2                  0.009   myosin, heavy chain 2, skeletal muscle, adult [Homo...
QSOX1                 0.009   quiescin Q6 sulfhydryl oxidase 1 isoform b 
QSOX1                 0.009   quiescin Q6 sulfhydryl oxidase 1 isoform a 
MYH4                  0.009   myosin, heavy polypeptide 4, skeletal muscle 
MYH13                 0.005   myosin, heavy polypeptide 13, skeletal muscle [Homo...
MYH8                  0.005   myosin, heavy chain 8, skeletal muscle, perinatal [...
DPEP2                 0.005   dipeptidase 2 precursor 
MS4A14                0.005   membrane-spanning 4-domains, subfamily A, member 14...
MS4A14                0.005   membrane-spanning 4-domains, subfamily A, member 14...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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