Guide to the Human Genome
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Name: LOC100288189 Sequence: fasta or formatted (302aa) NCBI GI: 239744123
Description:

PREDICTED: hypothetical protein XP_002343065

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         20           1
 C cysteine            4.3         13           1
 D aspartate           5.3         16           1
 E glutamate           6.0         18           2
 F phenylalanine       1.7          5           1
 G glycine            10.3         31           2
 H histidine           4.0         12           2
 I isoleucine          1.3          4           1
 K lysine              2.3          7           2
 L leucine            10.6         32           3
 M methionine          2.3          7           1
 N asparagine          1.7          5           1
 P proline             6.6         20           2
 Q glutamine           8.3         25           2
 R arginine            5.6         17           2
 S serine              9.6         29           4
 T threonine           6.0         18           1
 V valine              7.3         22           3
 W tryptophan          0.3          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343065 
LOC100291505          1.000   PREDICTED: hypothetical protein XP_002347172 
LOC100292757          0.998   PREDICTED: hypothetical protein 
LOC100291818          0.017   PREDICTED: hypothetical protein XP_002345593 
LOC100290730          0.017   PREDICTED: hypothetical protein XP_002348317 
LOC100288133          0.017   PREDICTED: hypothetical protein XP_002342283 
TACC3                 0.015   transforming, acidic coiled-coil containing protein 3...
RPRD2                 0.012   Regulation of nuclear pre-mRNA domain containing 2 ...
ZNF628                0.012   zinc finger protein 628 
AFF1                  0.012   myeloid/lymphoid or mixed-lineage leukemia trithorax ...
ZNF219                0.010   zinc finger protein 219 
ZNF219                0.010   zinc finger protein 219 
MAP3K7IP3             0.010   mitogen-activated protein kinase kinase kinase 7 int...
ZNF219                0.010   zinc finger protein 219 
FAM123A               0.010   hypothetical protein LOC219287 isoform 1 
MTF1                  0.008   metal-regulatory transcription factor 1 
CUGBP1                0.008   CUG triplet repeat, RNA-binding protein 1 isoform 2 ...
SAC3D1                0.008   SAC3 domain containing 1 
TBC1D10B              0.008   TBC1 domain family, member 10B 
AHNAK2                0.008   AHNAK nucleoprotein 2 
COL1A2                0.008   alpha 2 type I collagen 
LOC100287558          0.008   PREDICTED: hypothetical protein XP_002343325 
MNT                   0.008   MAX binding protein 
TSC22D1               0.008   TSC22 domain family, member 1 isoform 1 
LOC389333             0.008   hypothetical protein LOC389333 
OTUD1                 0.008   OTU domain containing 1 
SMARCA4               0.008   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.008   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.008   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.008   SWI/SNF-related matrix-associated actin-dependent r...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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