Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: C5orf15 Sequence: fasta or formatted (265aa) NCBI GI: 9910278
Description:

keratinocytes associated transmembrane protein 2

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         18           3
 C cysteine            0.8          2           1
 D aspartate           6.8         18           3
 E glutamate           6.8         18           3
 F phenylalanine       3.0          8           3
 G glycine             3.8         10           2
 H histidine           2.6          7           1
 I isoleucine          5.3         14           2
 K lysine              4.9         13           2
 L leucine             9.4         25           3
 M methionine          2.3          6           1
 N asparagine          5.3         14           2
 P proline             7.5         20           2
 Q glutamine           3.0          8           1
 R arginine            3.8         10           1
 S serine             11.3         30           2
 T threonine           7.2         19           2
 V valine              6.0         16           2
 W tryptophan          0.8          2           1
 Y tyrosine            2.6          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   keratinocytes associated transmembrane protein 2 [Hom... 
TGOLN2                0.063   trans-golgi network protein 2 
LRRC68                0.034   PREDICTED: leucine rich repeat containing 68 
LRRC68                0.034   PREDICTED: leucine rich repeat containing 68 
LRRC68                0.034   PREDICTED: leucine rich repeat containing 68 
BAZ2B                 0.028   bromodomain adjacent to zinc finger domain, 2B [Homo...
SLC4A7                0.026   solute carrier family 4, sodium bicarbonate cotrans...
C9orf128              0.024   hypothetical protein LOC392307 
MUC5AC                0.024   mucin 5AC 
MUC5B                 0.024   mucin 5, subtype B, tracheobronchial 
KIF26B                0.022   kinesin family member 26B 
LOC100132635          0.020   PREDICTED: similar to mucin 5, partial 
LOC100294420          0.020   PREDICTED: similar to mucin 2 
MUC21                 0.020   mucin 21 
MUC2                  0.020   mucin 2 precursor 
UBTF                  0.020   upstream binding transcription factor, RNA polymera...
UBTF                  0.020   upstream binding transcription factor, RNA polymera...
UBTF                  0.020   upstream binding transcription factor, RNA polymerase...
WNK1                  0.018   WNK lysine deficient protein kinase 1 
MUC16                 0.018   mucin 16 
CUX2                  0.018   cut-like 2 
HHLA1                 0.016   HERV-H LTR-associating 1 
SRCAP                 0.016   Snf2-related CBP activator protein 
C11orf24              0.016   hypothetical protein LOC53838 
HAVCR1                0.016   hepatitis A virus cellular receptor 1 
HAVCR1                0.016   hepatitis A virus cellular receptor 1 
IKZF3                 0.016   aiolos isoform 6 
IKZF3                 0.016   aiolos isoform 5 
IKZF3                 0.016   aiolos isoform 4 
IKZF3                 0.016   aiolos isoform 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press