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Search of human proteins with 9558733
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|9558733 transformer-2 alpha [Homo sapiens]
(282 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|9558733 transformer-2 alpha [Homo sapiens] 583 e-167
gi|4759098 splicing factor, arginine/serine-rich 10 [Homo sapiens] 357 5e-99
gi|4502847 cold inducible RNA binding protein [Homo sapiens] 101 6e-22
gi|29568103 U1 small nuclear ribonucleoprotein 70 kDa [Homo sapi... 89 6e-18
gi|5803137 RNA binding motif protein 3 [Homo sapiens] 88 1e-17
gi|119226260 calcium homeostasis endoplasmic reticulum protein [... 81 1e-15
gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo sa... 80 3e-15
gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo sap... 80 3e-15
gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens] 78 1e-14
gi|56699409 RNA binding motif protein, X-linked [Homo sapiens] 77 2e-14
gi|55956788 nucleolin [Homo sapiens] 76 3e-14
gi|5730079 FUS interacting protein (serine-arginine rich) 1 isof... 75 5e-14
gi|169161980 PREDICTED: similar to FUS interacting protein (seri... 75 5e-14
gi|16905517 FUS interacting protein (serine-arginine rich) 1 iso... 75 5e-14
gi|6857826 RNA-binding protein S1, serine-rich domain [Homo sapi... 74 2e-13
gi|18379334 RNA-binding protein S1, serine-rich domain [Homo sap... 74 2e-13
gi|153252068 testes-specific heterogenous nuclear ribonucleoprot... 73 2e-13
gi|169166609 PREDICTED: similar to ribonucleic acid binding prot... 72 4e-13
gi|239752336 PREDICTED: similar to RNA binding motif protein, X-... 72 4e-13
gi|113415994 PREDICTED: similar to ribonucleic acid binding prot... 72 4e-13
gi|239746849 PREDICTED: hypothetical protein XP_002343863 [Homo ... 72 4e-13
gi|15055543 splicing factor, arginine/serine-rich 2B [Homo sapiens] 72 4e-13
gi|42741682 zinc finger protein 265 isoform 2 [Homo sapiens] 72 5e-13
gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo sap... 71 9e-13
gi|223890219 RNA binding motif protein, X-linked-like 3 [Homo sa... 71 1e-12
gi|42741684 zinc finger protein 265 isoform 1 [Homo sapiens] 71 1e-12
gi|113415504 PREDICTED: similar to ribonucleic acid binding prot... 70 2e-12
gi|169166499 PREDICTED: similar to ribonucleic acid binding prot... 70 2e-12
gi|113415498 PREDICTED: similar to ribonucleic acid binding prot... 70 2e-12
gi|88973230 PREDICTED: similar to ribonucleic acid binding prote... 70 2e-12
>gi|9558733 transformer-2 alpha [Homo sapiens]
Length = 282
Score = 583 bits (1503), Expect = e-167
Identities = 282/282 (100%), Positives = 282/282 (100%)
Query: 1 MSDVEENNFEGRESRSQSKSPTGTPARVKSESRSGSRSPSRVSKHSESHSRSRSKSRSRS 60
MSDVEENNFEGRESRSQSKSPTGTPARVKSESRSGSRSPSRVSKHSESHSRSRSKSRSRS
Sbjct: 1 MSDVEENNFEGRESRSQSKSPTGTPARVKSESRSGSRSPSRVSKHSESHSRSRSKSRSRS 60
Query: 61 RRHSHRRYTRSRSHSHSHRRRSRSRSYTPEYRRRRSRSHSPMSNRRRHTGSRANPDPNTC 120
RRHSHRRYTRSRSHSHSHRRRSRSRSYTPEYRRRRSRSHSPMSNRRRHTGSRANPDPNTC
Sbjct: 61 RRHSHRRYTRSRSHSHSHRRRSRSRSYTPEYRRRRSRSHSPMSNRRRHTGSRANPDPNTC 120
Query: 121 LGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERA 180
LGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERA
Sbjct: 121 LGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERA 180
Query: 181 NGMELDGRRIRVDYSITKRAHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGRRRDSYYDR 240
NGMELDGRRIRVDYSITKRAHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGRRRDSYYDR
Sbjct: 181 NGMELDGRRIRVDYSITKRAHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGRRRDSYYDR 240
Query: 241 GYDRGYDRYEDYDYRYRRRSPSPYYSRYRSRSRSRSYSPRRY 282
GYDRGYDRYEDYDYRYRRRSPSPYYSRYRSRSRSRSYSPRRY
Sbjct: 241 GYDRGYDRYEDYDYRYRRRSPSPYYSRYRSRSRSRSYSPRRY 282
>gi|4759098 splicing factor, arginine/serine-rich 10 [Homo sapiens]
Length = 288
Score = 357 bits (917), Expect = 5e-99
Identities = 198/305 (64%), Positives = 222/305 (72%), Gaps = 40/305 (13%)
Query: 1 MSDVEENNFEGRESRSQSKSPTGTPARVKSESRSGSRSPSRV-SKHSESHSRSRSKSRSR 59
MSD E N+ RESRS S+S + + KS + +RS S+ S+ S S SRSRS+SRSR
Sbjct: 1 MSDSGEQNYGERESRSASRSGSAHGSG-KSARHTPARSRSKEDSRRSRSKSRSRSESRSR 59
Query: 60 SRRHSHRRYTRSRSHSHSHRRRSRSRSYTPEYRRRRSRSHSPMSNRRRHTGSRANPDPNT 119
SRR S R YTRSRS S SHRR SRSRSY+ +YRRR S SHSPMS RRRH G+RANPDPN
Sbjct: 60 SRRSSRRHYTRSRSRSRSHRR-SRSRSYSRDYRRRHSHSHSPMSTRRRHVGNRANPDPNC 118
Query: 120 CLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMER 179
CLGVFGLSLYTTERDLREVFS+YGP++ V++VYDQ++ RSRGFAFVYFE +DD+KEA ER
Sbjct: 119 CLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKER 178
Query: 180 ANGMELDGRRIRVDYSITKRAHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGRRRDSYYD 239
ANGMELDGRRIRVD+SITKR HTPTPGIYMGRPT+ G RRRD YYD
Sbjct: 179 ANGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTY--------------GSSRRRD-YYD 223
Query: 240 RGYDRGYD--------------------RYEDYDYRYRRRSPSPYYSR--YRSRSRSRSY 277
RGYDRGYD +D D YRRRSPSPYYSR YRSRSRSRSY
Sbjct: 224 RGYDRGYDDRDYYSRSYRGGGGGGGGWRAAQDRDQIYRRRSPSPYYSRGGYRSRSRSRSY 283
Query: 278 SPRRY 282
SPRRY
Sbjct: 284 SPRRY 288
>gi|4502847 cold inducible RNA binding protein [Homo sapiens]
Length = 172
Score = 101 bits (252), Expect = 6e-22
Identities = 73/166 (43%), Positives = 89/166 (53%), Gaps = 25/166 (15%)
Query: 121 LGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERA 180
L V GLS T E+ L +VFS+YG +S V VV D+ T RSRGF FV FE IDD+K+AM
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 181 NGMELDGRRIRVDYSITKRAHTPTPGIYMGRPTHSGGGGGGGGGGGGGG---GGRRRDSY 237
NG +DGR+IRVD + G+ + + G GG GG G GGR R
Sbjct: 68 NGKSVDGRQIRVDQA--------------GKSSDNRSRGYRGGSAGGRGFFRGGRGRGRG 113
Query: 238 YDR-GYDRGYDRYEDYDYRYRRRSPSPYYSR--YRSRSRSRSYSPR 280
+ R G DRGY R+ RS SR Y SRS+S YS R
Sbjct: 114 FSRGGGDRGYG-----GNRFESRSGGYGGSRDYYSSRSQSGGYSDR 154
>gi|29568103 U1 small nuclear ribonucleoprotein 70 kDa [Homo
sapiens]
Length = 437
Score = 88.6 bits (218), Expect = 6e-18
Identities = 70/219 (31%), Positives = 97/219 (44%), Gaps = 18/219 (8%)
Query: 69 TRSRSHSHSHRRRSRSRSYTPEYRRRRSRSHSPMSNRRRHTGSRANPDPNTCLGVFGLSL 128
TR+ + R+ R + RR+ + + H A D L V ++
Sbjct: 58 TRAETREERMERKRREK-----IERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNY 112
Query: 129 YTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGR 188
TTE LR F YGP+ +++VY +R+G+ RG+AF+ +E D A + A+G ++DGR
Sbjct: 113 DTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGR 172
Query: 189 RIRVDYSITKRAHTPTPGIYMGRPTHSGGGGGGGGGGGGG----GGGRRRDSYYDR--GY 242
R+ VD +R T + RP GGG GG GG GR S YD G
Sbjct: 173 RVLVD---VERGRT----VKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERPGP 225
Query: 243 DRGYDRYEDYDYRYRRRSPSPYYSRYRSRSRSRSYSPRR 281
R D D RR S + R R RSRS RR
Sbjct: 226 SPLPHRDRDRDRERERRERSRERDKERERRRSRSRDRRR 264
Score = 46.6 bits (109), Expect = 2e-05
Identities = 68/237 (28%), Positives = 81/237 (34%), Gaps = 26/237 (10%)
Query: 11 GRESRSQSKSPTGTPARVKSESRSGSRSPSRVSKHSESHSRSRSKSRSRSRRHSHRRYTR 70
GR+ S+ G P+ + R R R SR R K R R R S R R
Sbjct: 212 GRDDTSRYDERPG-PSPLPHRDRDRDRERER-----RERSRERDKERERRRSRSRDRRRR 265
Query: 71 SRSHSHSHRRRSRSRSYTPEYRRRRSRSHSPMSNRRRHTGSRANPDPNTCLGVFGLSLYT 130
SRS RRRSR RS + R+R S+R R R G G
Sbjct: 266 SRSRDKEERRRSRERSKDKDRDRKR------RSSRSRERARRERERKEELRGGGGDMAEP 319
Query: 131 TER-DLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRR 189
+E D G L + GR R ER + ER + D R
Sbjct: 320 SEAGDAPPDDGPPGELGPDGPDGPEEKGRDRD-----RERRRSHRSERERRRDRDRDRDR 374
Query: 190 IRVDYSITKRAHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGRRRDSYYDRGYDRGY 246
R KR G GR + GGGGG G G G RD Y + GY
Sbjct: 375 DREH----KRGER---GSERGR-DEARGGGGGQDNGLEGLGNDSRDMYMESEGGDGY 423
Score = 32.3 bits (72), Expect = 0.48
Identities = 26/69 (37%), Positives = 29/69 (42%), Gaps = 8/69 (11%)
Query: 44 KHSESHSRSRSKSRSRSRRHSHRRYTRSRSHSHSHRRRSRSRSYTPEYRRRRSRSHSPMS 103
+HS SR R HR R R RR RSR E RRRSRS
Sbjct: 209 RHSGRDDTSRYDERPGPSPLPHRDRDRDRERE----RRERSRERDKERERRRSRSR---- 260
Query: 104 NRRRHTGSR 112
+RRR + SR
Sbjct: 261 DRRRRSRSR 269
>gi|5803137 RNA binding motif protein 3 [Homo sapiens]
Length = 157
Score = 87.8 bits (216), Expect = 1e-17
Identities = 63/159 (39%), Positives = 76/159 (47%), Gaps = 22/159 (13%)
Query: 121 LGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERA 180
L V GL+ T E+ L + FS +GP+S V VV D+ T RSRGF F+ F + + AM
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAM 67
Query: 181 NGMELDGRRIRVDYSITKRAHTPTPGIYMGRPTHSGGGGGGGGG----GGGGGGGRRRDS 236
NG LDGR+IRVD++ R T GG G G G GGG G
Sbjct: 68 NGESLDGRQIRVDHAGKS-----------ARGTRGGGFGAHGRGRSYSRGGGDQGYGSGR 116
Query: 237 YYDR---GYDRGYDRYEDYDYR----YRRRSPSPYYSRY 268
YYD GY GY R DY+ R Y R S Y Y
Sbjct: 117 YYDSRPGGYGYGYGRSRDYNGRNQGGYDRYSGGNYRDNY 155
>gi|119226260 calcium homeostasis endoplasmic reticulum protein
[Homo sapiens]
Length = 916
Score = 80.9 bits (198), Expect = 1e-15
Identities = 60/120 (50%), Positives = 73/120 (60%), Gaps = 13/120 (10%)
Query: 10 EGRESRSQSKSPTGTPARVKSESRSGSRSPSRVSKHSESHSRSRSKS------RSRSRRH 63
+G+E R+ P+ + +R KS RS SRS SR SK S S+SRSRS+S RSRSR
Sbjct: 727 KGQEKRNSG--PSRSRSRSKSRGRSSSRSNSRSSKSSGSYSRSRSRSCSRSYSRSRSRSR 784
Query: 64 SHRRYTRSRSHSHSHRRRSRSRSYTPEYRRRRSRSHSPMSNRRRHTGSR-ANPDPNTCLG 122
S R +RSRS S S RSRS+SY+P RRRRSRS SP GS A P P++ LG
Sbjct: 785 SRSRSSRSRSRSQS---RSRSKSYSPG-RRRRSRSRSPTPPSSAGLGSNSAPPIPDSRLG 840
Score = 52.0 bits (123), Expect = 6e-07
Identities = 39/88 (44%), Positives = 49/88 (55%), Gaps = 16/88 (18%)
Query: 2 SDVEENNFEGRESRSQSKSPTGTPARVKSESRSGSRSPSRVSKHSESHSRSRSKSRSRSR 61
S N+ + S S S+S + + +R S SRS SRS SR SRSRS+S+SRS
Sbjct: 749 SSSRSNSRSSKSSGSYSRSRSRSCSRSYSRSRSRSRSRSR-------SSRSRSRSQSRS- 800
Query: 62 RHSHRRYTRSRSHSHSHRRRSRSRSYTP 89
RS+S+S RRRSRSRS TP
Sbjct: 801 --------RSKSYSPGRRRRSRSRSPTP 820
Score = 31.2 bits (69), Expect = 1.1
Identities = 18/26 (69%), Positives = 18/26 (69%)
Query: 255 RYRRRSPSPYYSRYRSRSRSRSYSPR 280
R R RS S YSR RSRSRSRS S R
Sbjct: 766 RSRSRSCSRSYSRSRSRSRSRSRSSR 791
Score = 30.8 bits (68), Expect = 1.4
Identities = 24/54 (44%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Query: 228 GGGGRRRDSYYDRGYDRGYDRYEDYDYRYRRRSPSPYYSRYRSRSRSRSYSPRR 281
G R R R Y R R R R RS S SR +SRSRS+SYSP R
Sbjct: 762 GSYSRSRSRSCSRSYSRSRSRS-----RSRSRS-SRSRSRSQSRSRSKSYSPGR 809
Score = 28.1 bits (61), Expect = 9.0
Identities = 22/53 (41%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 230 GGRRRDSYYDRGYDRGYDRYEDYDYRYRRRSPSP-YYSRYRSRSRSRSYSPRR 281
G +R+S R R R R S S YSR RSRS SRSYS R
Sbjct: 728 GQEKRNSGPSRSRSRSKSRGRSSSRSNSRSSKSSGSYSRSRSRSCSRSYSRSR 780
>gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo
sapiens]
Length = 390
Score = 79.7 bits (195), Expect = 3e-15
Identities = 57/165 (34%), Positives = 76/165 (46%), Gaps = 14/165 (8%)
Query: 121 LGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERA 180
L + GL+ T E+ L VF +YG + V ++ D+ T +SRGFAFV FE D+K+A
Sbjct: 10 LFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 181 NGMELDGRRIRVDY----SITKRAHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGRRRDS 236
NG LDG+ I+V+ S + H P P P G G G GG GG G R
Sbjct: 70 NGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPR-GFGAGRGGSGGTRGPPSRGGH 128
Query: 237 YYDRGYDRGYDRYEDYDYRYRRRSPSPYYSRYRSRSRSRSYSPRR 281
D GY ++ +R P P RS SP+R
Sbjct: 129 MDDGGYSMNFNMSSSRGPLPVKRGPPP---------RSGGPSPKR 164
Score = 33.9 bits (76), Expect = 0.16
Identities = 57/247 (23%), Positives = 84/247 (34%), Gaps = 32/247 (12%)
Query: 11 GRESRSQSKSP--TGTPARVKSESRSGSRSPSRVSKHSESHSRSRSKSRSRSRRHSHRRY 68
G RS SP + V+S S G R+P +S+ +S+ + SRR Y
Sbjct: 152 GPPPRSGGPSPKRSAPSGLVRSSSGMGGRAP--LSRGRDSYGGPPRREPLPSRRDV---Y 206
Query: 69 TRSRSHSHSHRRRSRSRSYTPEYRRRRSRSHSPMSNRRRHTGSRANPDPNTCLGVFGLSL 128
R +S + SR Y P R R + P R G ++ D G
Sbjct: 207 LSPRDDGYSTKDSYSSRDY-PSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRGYGDRDG 265
Query: 129 YTTERDL---------REVFSRYG------------PLSGVNVVYDQRTGRSRGFAFVYF 167
Y +RD R+ + YG P G + YD + G+
Sbjct: 266 YGRDRDYSDHPSGGSYRDSYESYGNSRSAPLTRGPPPSYGGSSRYDDYSSSRDGYGG--- 322
Query: 168 ERIDDSKEAMERANGMELDGRRIRVDYSITKRAHTPTPGIYMGRPTHSGGGGGGGGGGGG 227
R S + + + GR+ R +R + + Y + G G GG
Sbjct: 323 SRDSYSSSRSDLYSSCDRVGRQERGLPPSVERGYPSSRDSYSSSSRGAPRGAGPGGSRSD 382
Query: 228 GGGGRRR 234
GGGR R
Sbjct: 383 RGGGRSR 389
>gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo
sapiens]
Length = 390
Score = 79.7 bits (195), Expect = 3e-15
Identities = 57/165 (34%), Positives = 76/165 (46%), Gaps = 14/165 (8%)
Query: 121 LGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERA 180
L + GL+ T E+ L VF +YG + V ++ D+ T +SRGFAFV FE D+K+A
Sbjct: 10 LFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 181 NGMELDGRRIRVDY----SITKRAHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGRRRDS 236
NG LDG+ I+V+ S + H P P P G G G GG GG G R
Sbjct: 70 NGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPR-GFGAGRGGSGGTRGPPSRGGH 128
Query: 237 YYDRGYDRGYDRYEDYDYRYRRRSPSPYYSRYRSRSRSRSYSPRR 281
D GY ++ +R P P RS SP+R
Sbjct: 129 MDDGGYSMNFNMSSSRGPLPVKRGPPP---------RSGGPSPKR 164
Score = 33.9 bits (76), Expect = 0.16
Identities = 57/247 (23%), Positives = 84/247 (34%), Gaps = 32/247 (12%)
Query: 11 GRESRSQSKSP--TGTPARVKSESRSGSRSPSRVSKHSESHSRSRSKSRSRSRRHSHRRY 68
G RS SP + V+S S G R+P +S+ +S+ + SRR Y
Sbjct: 152 GPPPRSGGPSPKRSAPSGLVRSSSGMGGRAP--LSRGRDSYGGPPRREPLPSRRDV---Y 206
Query: 69 TRSRSHSHSHRRRSRSRSYTPEYRRRRSRSHSPMSNRRRHTGSRANPDPNTCLGVFGLSL 128
R +S + SR Y P R R + P R G ++ D G
Sbjct: 207 LSPRDDGYSTKDSYSSRDY-PSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRGYGDRDG 265
Query: 129 YTTERDL---------REVFSRYG------------PLSGVNVVYDQRTGRSRGFAFVYF 167
Y +RD R+ + YG P G + YD + G+
Sbjct: 266 YGRDRDYSDHPSGGSYRDSYESYGNSRSAPLTRGPPPSYGGSSRYDDYSSSRDGYGG--- 322
Query: 168 ERIDDSKEAMERANGMELDGRRIRVDYSITKRAHTPTPGIYMGRPTHSGGGGGGGGGGGG 227
R S + + + GR+ R +R + + Y + G G GG
Sbjct: 323 SRDSYSSSRSDLYSSCDRVGRQERGLPPSVERGYPSSRDSYSSSSRGAPRGAGPGGSRSD 382
Query: 228 GGGGRRR 234
GGGR R
Sbjct: 383 RGGGRSR 389
>gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens]
Length = 221
Score = 77.8 bits (190), Expect = 1e-14
Identities = 68/180 (37%), Positives = 84/180 (46%), Gaps = 26/180 (14%)
Query: 111 SRANPDPN----TCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVY 166
S P P+ T L V L+ T+ LR VF +YG + V + D+ T SRGFAFV
Sbjct: 2 SYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 61
Query: 167 FERIDDSKEAMERANGMELDGRRIRVDYSITKRAHTPTPGIYMGRP--THSGGGGGGGGG 224
F D+++AM+ +G LDGR +RV + GRP +H G
Sbjct: 62 FHDKRDAEDAMDAMDGAVLDGRELRVQMA------------RYGRPPDSHHSRRGPPPRR 109
Query: 225 GGGGGGGRRRDSYYDRGYDRGYDRYEDYDYRYRRRSPSPY---YSRYRSRSRSRSYSPRR 281
GGGG GRR S R R R R R RS S Y SR R+RSRSRS S R
Sbjct: 110 YGGGGYGRRSRSPRRRRRSRSRSR-----SRSRSRSRSRYSRSKSRSRTRSRSRSTSKSR 164
Score = 55.8 bits (133), Expect = 4e-08
Identities = 34/66 (51%), Positives = 44/66 (66%)
Query: 12 RESRSQSKSPTGTPARVKSESRSGSRSPSRVSKHSESHSRSRSKSRSRSRRHSHRRYTRS 71
R SRS+S+S T + +R S+SRS RS S+ S S S SRSRS+SRSRS +R ++S
Sbjct: 143 RYSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSPPPVSKRESKS 202
Query: 72 RSHSHS 77
RS S S
Sbjct: 203 RSRSKS 208
Score = 55.5 bits (132), Expect = 5e-08
Identities = 46/119 (38%), Positives = 58/119 (48%), Gaps = 17/119 (14%)
Query: 10 EGRESRSQSK----------SPTGTPARVKSESRSGSRSPSRVSKHSESHSRSRSKSRSR 59
+GRE R Q S G P R R G R S+ RSRS+SRSR
Sbjct: 81 DGRELRVQMARYGRPPDSHHSRRGPPPR-----RYGGGGYGRRSRSPRRRRRSRSRSRSR 135
Query: 60 SRRHSHRRYTRSRSHSHSHRRRSRSRSYTPEYRRRRSRSHSPMSNR-RRHTGSRANPDP 117
SR S RY+RS+S S + R RSRS S + RR +S+S S +R R + SR+ P
Sbjct: 136 SRSRSRSRYSRSKSRSRT-RSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSPP 193
Score = 54.7 bits (130), Expect = 9e-08
Identities = 52/116 (44%), Positives = 60/116 (51%), Gaps = 26/116 (22%)
Query: 11 GRESRSQSKSPTGTPARVKSESRSGSRSPSRVSKHSESHSR-SRSKSRSRSRRHSH---- 65
GR SRS + R +S SRS SRS SR S SR SRSKSRSR+R S
Sbjct: 116 GRRSRSPRR-------RRRSRSRSRSRSRSR------SRSRYSRSKSRSRTRSRSRSTSK 162
Query: 66 -RRYTRSRSHSHS-HRRRSRSRSYTPEYRRRRSRSHSPMSNRRRHTGSRANPDPNT 119
R RS+S S S R RSRSRS R RSRS P+S R + SR+ P +
Sbjct: 163 SRSARRSKSKSSSVSRSRSRSRS------RSRSRSPPPVSKRESKSRSRSKSPPKS 212
>gi|56699409 RNA binding motif protein, X-linked [Homo sapiens]
Length = 391
Score = 76.6 bits (187), Expect = 2e-14
Identities = 49/135 (36%), Positives = 67/135 (49%), Gaps = 7/135 (5%)
Query: 121 LGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERA 180
L + GL+ T E+ L VF +YG + V ++ D+ T +SRGFAFV FE D+K+A
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 181 NGMELDGRRIRVDYSI-----TKRAHTPTPGIYMGRPTHSGGGGGGGGG--GGGGGGGRR 233
NG LDG+ I+V+ + + R P P G P GG GG GG G GG
Sbjct: 70 NGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGLRGGRGGSGGTRGPPSRGGHM 129
Query: 234 RDSYYDRGYDRGYDR 248
D Y ++ R
Sbjct: 130 DDGGYSMNFNMSSSR 144
Score = 37.7 bits (86), Expect = 0.011
Identities = 55/228 (24%), Positives = 82/228 (35%), Gaps = 29/228 (12%)
Query: 28 VKSESRSGSRSPSRVSKHSESHSRSRSKSRSRSRRHSHRRYTRSRSHSHSHRRRSRSRSY 87
V+S S G R+P VS+ +S+ + SRR Y R +S + SR Y
Sbjct: 171 VRSSSGMGGRAP--VSRGRDSYGGPPRREPLPSRRDV---YLSPRDDGYSTKDSYSSRDY 225
Query: 88 TPEYRRRRSRSHSPMSNRRRHTGSRANPDPNTCLGVFGLSLYTTERDL---------REV 138
P R R + P R G ++ D G Y +RD R+
Sbjct: 226 -PSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGSYRDS 284
Query: 139 FSRYG------------PLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELD 186
+ YG P G + YD + G+ + S+ + ++G +
Sbjct: 285 YESYGNSRSAPPTRGPPPSYGGSSRYDDYSSSRDGYGGSR-DSYSSSRSDLY-SSGRDRV 342
Query: 187 GRRIRVDYSITKRAHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGRRR 234
GR+ R +R + P Y + GGG GG GGGR R
Sbjct: 343 GRQERGLPPSMERGYPPPRDSYSSSSRGAPRGGGRGGSRSDRGGGRSR 390
>gi|55956788 nucleolin [Homo sapiens]
Length = 710
Score = 76.3 bits (186), Expect = 3e-14
Identities = 56/142 (39%), Positives = 74/142 (52%), Gaps = 14/142 (9%)
Query: 110 GSRANPD----PNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFV 165
G R +P+ P+ L V GLS TTE L+E F G + +V D+ TG S+GF FV
Sbjct: 559 GPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFD--GSVRA-RIVTDRETGSSKGFGFV 615
Query: 166 YFERIDDSKEAMERANGMELDGRRIRVDYSITKRAHTPTPGIYMGRPTHSG--GGGGGGG 223
F +D+K A E E+DG ++ +D++ K G + GR G GG GGG
Sbjct: 616 DFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK-----GEGGFGGRGGGRGGFGGRGGGR 670
Query: 224 GGGGGGGGRRRDSYYDRGYDRG 245
GG GG GGR R + RG RG
Sbjct: 671 GGRGGFGGRGRGGFGGRGGFRG 692
Score = 48.1 bits (113), Expect = 8e-06
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 126 LSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMEL 185
LS TE L+EVF + + V + G+S+G+AF+ F +D+KEA+ N E+
Sbjct: 493 LSYSATEETLQEVFEKATFIK----VPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREI 548
Query: 186 DGRRIRVD 193
+GR IR++
Sbjct: 549 EGRAIRLE 556
Score = 39.7 bits (91), Expect = 0.003
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 6/85 (7%)
Query: 111 SRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERI 170
S+ D T L L T+ +L+EVF + V+ + G+S+G A++ F+
Sbjct: 386 SKKERDARTLLAK-NLPYKVTQDELKEVFEDAAEIRLVS-----KDGKSKGIAYIEFKTE 439
Query: 171 DDSKEAMERANGMELDGRRIRVDYS 195
D+++ E G E+DGR I + Y+
Sbjct: 440 ADAEKTFEEKQGTEIDGRSISLYYT 464
>gi|5730079 FUS interacting protein (serine-arginine rich) 1 isoform
1 [Homo sapiens]
Length = 183
Score = 75.5 bits (184), Expect = 5e-14
Identities = 62/176 (35%), Positives = 79/176 (44%), Gaps = 38/176 (21%)
Query: 111 SRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERI 170
SR PNT L V ++ T DLR F RYGP+ V V D T R RGFA+V FE +
Sbjct: 2 SRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDV 61
Query: 171 DDSKEAMERANGMELDGRRIRVDYSITKRAHTPTPGIYMGRPTHSGGGGGGGGGGGGGGG 230
D+++A+ + + GR+I + ++ R GR +S
Sbjct: 62 RDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSS-------------- 107
Query: 231 GRRRDSYYDRGYDRGYDRYEDYDYRYRRRSPSPYYSRYRSRSRS------RSYSPR 280
RY+DYD RY RRS S Y R RSRSRS RSYSPR
Sbjct: 108 ----------------SRYDDYD-RY-RRSRSRSYERRRSRSRSFDYNYRRSYSPR 145
Score = 47.0 bits (110), Expect = 2e-05
Identities = 33/79 (41%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 58 SRSRRHSHRRYTRSRSHSHSHRRRSRSRSYTPEYRRRRSRSHSPMSNRRRHTGSRANPD- 116
S SR + RY RSRS S+ RRRSRSRS+ YRR S +S + R R + S ++ D
Sbjct: 106 SSSRYDDYDRYRRSRSRSYE-RRRSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHSDNDR 164
Query: 117 PNTCLGVFGLSLYTTERDL 135
PN S Y T R +
Sbjct: 165 PNCSWNTQYSSAYYTSRKI 183
Score = 43.1 bits (100), Expect = 3e-04
Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 8/77 (10%)
Query: 24 TPARVKSESRSGSRSPSRVSKHSESHSRSRSKSRSRSRRHSHRRYTRSRSHSHSHRRRSR 83
TP ++K++ S SR + + R R RSRSR + RR +RSRS +++RR
Sbjct: 92 TPNQMKAKEGRNVYSSSRY----DDYDRYR---RSRSRSYERRR-SRSRSFDYNYRRSYS 143
Query: 84 SRSYTPEYRRRRSRSHS 100
R+ P R RRSRSHS
Sbjct: 144 PRNSRPTGRPRRSRSHS 160
>gi|169161980 PREDICTED: similar to FUS interacting protein
(serine-arginine rich) 1, partial [Homo sapiens]
Length = 181
Score = 75.5 bits (184), Expect = 5e-14
Identities = 62/176 (35%), Positives = 79/176 (44%), Gaps = 38/176 (21%)
Query: 111 SRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERI 170
SR PNT L V ++ T DLR F RYGP+ V V D T R RGFA+V FE +
Sbjct: 2 SRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDV 61
Query: 171 DDSKEAMERANGMELDGRRIRVDYSITKRAHTPTPGIYMGRPTHSGGGGGGGGGGGGGGG 230
D+++A+ + + GR+I + ++ R GR +S
Sbjct: 62 RDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSS-------------- 107
Query: 231 GRRRDSYYDRGYDRGYDRYEDYDYRYRRRSPSPYYSRYRSRSRS------RSYSPR 280
RY+DYD RY RRS S Y R RSRSRS RSYSPR
Sbjct: 108 ----------------SRYDDYD-RY-RRSRSRSYERRRSRSRSFDYNYRRSYSPR 145
Score = 48.1 bits (113), Expect = 8e-06
Identities = 32/76 (42%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 58 SRSRRHSHRRYTRSRSHSHSHRRRSRSRSYTPEYRRRRSRSHSPMSNRRRHTGSRANPDP 117
S SR + RY RSRS S+ RRRSRSRS+ YRR S + P RR N P
Sbjct: 106 SSSRYDDYDRYRRSRSRSYE-RRRSRSRSFDYNYRRSYSPRNRPTGRPRRSRSHSDNDRP 164
Query: 118 NTCLGVFGLSLYTTER 133
N S Y T R
Sbjct: 165 NCSWNTQYSSAYYTSR 180
Score = 35.4 bits (80), Expect = 0.057
Identities = 30/82 (36%), Positives = 40/82 (48%), Gaps = 19/82 (23%)
Query: 24 TPARVKSESRSGSRSPSRVS-----KHSESHSRSRSKSRSRSRRHSHRRYTRSRSHSHSH 78
TP ++K++ S SR + S S S R +SRSRS +++RR S+S
Sbjct: 92 TPNQMKAKEGRNVYSSSRYDDYDRYRRSRSRSYERRRSRSRSFDYNYRR-------SYSP 144
Query: 79 RRRSRSRSYTPEYRRRRSRSHS 100
R R P R RRSRSHS
Sbjct: 145 RNR-------PTGRPRRSRSHS 159
Score = 35.4 bits (80), Expect = 0.057
Identities = 23/48 (47%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 68 YTRSRSHSHSHRRRSRSRSYTPEYRRRRSRSHSPMSNRRRHTGSRANP 115
Y+ SR + RRSRSRS Y RRRSRS S N RR R P
Sbjct: 105 YSSSRYDDYDRYRRSRSRS----YERRRSRSRSFDYNYRRSYSPRNRP 148
>gi|16905517 FUS interacting protein (serine-arginine rich) 1
isoform 2 [Homo sapiens]
Length = 262
Score = 75.5 bits (184), Expect = 5e-14
Identities = 62/176 (35%), Positives = 79/176 (44%), Gaps = 38/176 (21%)
Query: 111 SRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERI 170
SR PNT L V ++ T DLR F RYGP+ V V D T R RGFA+V FE +
Sbjct: 2 SRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDV 61
Query: 171 DDSKEAMERANGMELDGRRIRVDYSITKRAHTPTPGIYMGRPTHSGGGGGGGGGGGGGGG 230
D+++A+ + + GR+I + ++ R GR +S
Sbjct: 62 RDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSS-------------- 107
Query: 231 GRRRDSYYDRGYDRGYDRYEDYDYRYRRRSPSPYYSRYRSRSRS------RSYSPR 280
RY+DYD RY RRS S Y R RSRSRS RSYSPR
Sbjct: 108 ----------------SRYDDYD-RY-RRSRSRSYERRRSRSRSFDYNYRRSYSPR 145
Score = 45.1 bits (105), Expect = 7e-05
Identities = 42/129 (32%), Positives = 60/129 (46%), Gaps = 30/129 (23%)
Query: 8 NFEGRESRSQS-------------KSPTGTPARVKSES-----RSGSRSPSRVSKHSESH 49
++E R SRS+S PTG P R +S S + +RS SR +S S
Sbjct: 123 SYERRRSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHSDNDRFKHRNRSFSRSKSNSRSR 182
Query: 50 SRS------RSKSRSRSRRHSHRRYTRSRSHSHSH-----RRRSRSRSYTPEYRRRRSRS 98
S+S ++KSRSRS H+ R T S++ S +H R SR P + +SRS
Sbjct: 183 SKSQPKKEMKAKSRSRSASHTKTRGT-SKTDSKTHYKSGSRYEKESRKKEPPRSKSQSRS 241
Query: 99 HSPMSNRRR 107
S ++ R
Sbjct: 242 QSRSRSKSR 250
Score = 45.1 bits (105), Expect = 7e-05
Identities = 32/104 (30%), Positives = 55/104 (52%), Gaps = 2/104 (1%)
Query: 2 SDVEENNFEGRESRSQSKSPTGTPARVKSESRSGSRSPSRVSKHSESHSRSRSKSRSRSR 61
S + + F+ R +RS S+S + + +R KS+ + ++ SR S + +R SK+ S++
Sbjct: 158 SHSDNDRFKHR-NRSFSRSKSNSRSRSKSQPKKEMKAKSRSRSASHTKTRGTSKTDSKTH 216
Query: 62 RHSHRRYTRSRSHSHSHRRRSRSRSYTPEYRRRRSRS-HSPMSN 104
S RY + R +S+SRS + + RSRS SP S+
Sbjct: 217 YKSGSRYEKESRKKEPPRSKSQSRSQSRSRSKSRSRSWTSPKSS 260
Score = 43.9 bits (102), Expect = 2e-04
Identities = 27/59 (45%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 58 SRSRRHSHRRYTRSRSHSHSHRRRSRSRSYTPEYRRRRSRSHSPMSNRRRHTGSRANPD 116
S SR + RY RSRS S+ RRRSRSRS+ YRR S +S + R R + S ++ D
Sbjct: 106 SSSRYDDYDRYRRSRSRSYE-RRRSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHSDND 163
Score = 43.5 bits (101), Expect = 2e-04
Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 9/85 (10%)
Query: 24 TPARVKSESRSGSRSPSRVSKHSESHSRSRSKSRSRSRRHSHRRYTRSRSHSHSHRRRSR 83
TP ++K++ S SR + + R R RSRSR + RR +RSRS +++RR
Sbjct: 92 TPNQMKAKEGRNVYSSSRY----DDYDRYR---RSRSRSYERRR-SRSRSFDYNYRRSYS 143
Query: 84 SRSYTPEYRRRRSRSHSPMSNRRRH 108
R+ P R RRSRSHS ++R +H
Sbjct: 144 PRNSRPTGRPRRSRSHSD-NDRFKH 167
>gi|6857826 RNA-binding protein S1, serine-rich domain [Homo
sapiens]
Length = 305
Score = 73.6 bits (179), Expect = 2e-13
Identities = 57/190 (30%), Positives = 94/190 (49%), Gaps = 10/190 (5%)
Query: 2 SDVEENNFEGRESRSQSKSPTGTPARVKSESRSGSRSPSRVSKHSESHSRSRSKSRSRSR 61
S+ + + R+ RS S + T +R S S SGS + + S S S S S S+S S S
Sbjct: 53 SEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSAS-SRSGSSST 111
Query: 62 RHSHRRYTRSRSHSHSHRRRSRSRSYTPEYRRRRSRSHSPMSNRRRHTGSRANPDPNTCL 121
S + S S S S RR R R RS+S P + + +P P T +
Sbjct: 112 SRSSSSSSSSGSPSPSRRRHDNRR-------RSRSKSKPPKRDEKERKRRSPSPKP-TKV 163
Query: 122 GVFGLSLYTTERDLREVFSRYGPLSGVNV-VYDQRTGRSRGFAFVYFERIDDSKEAMERA 180
+ L+ T+ + E+FS YG + +++ V S+G+A+V FE D++++A++
Sbjct: 164 HIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHM 223
Query: 181 NGMELDGRRI 190
+G ++DG+ I
Sbjct: 224 DGGQIDGQEI 233
Score = 32.7 bits (73), Expect = 0.37
Identities = 24/55 (43%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 25 PARVKSESRSGSRSPSRVSKHSESHSRSRSKSRSRSRRHSHRRYTRSRSHSHSHR 79
P R+ RSP R+ + S S R RS R RSR RR+ RSRS S+S R
Sbjct: 253 PRRMLPPPPMWRRSPPRMRRRSRS-PRRRSPVRRRSRSPGRRRH-RSRSSSNSSR 305
Score = 30.4 bits (67), Expect = 1.8
Identities = 20/36 (55%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 70 RSRSHSHSHRRRS--RSRSYTPEYRRRRSRSHSPMS 103
R R S S RRRS R RS +P RR RSRS S S
Sbjct: 269 RMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSSSNSS 304
>gi|18379334 RNA-binding protein S1, serine-rich domain [Homo
sapiens]
Length = 305
Score = 73.6 bits (179), Expect = 2e-13
Identities = 57/190 (30%), Positives = 94/190 (49%), Gaps = 10/190 (5%)
Query: 2 SDVEENNFEGRESRSQSKSPTGTPARVKSESRSGSRSPSRVSKHSESHSRSRSKSRSRSR 61
S+ + + R+ RS S + T +R S S SGS + + S S S S S S+S S S
Sbjct: 53 SEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSAS-SRSGSSST 111
Query: 62 RHSHRRYTRSRSHSHSHRRRSRSRSYTPEYRRRRSRSHSPMSNRRRHTGSRANPDPNTCL 121
S + S S S S RR R R RS+S P + + +P P T +
Sbjct: 112 SRSSSSSSSSGSPSPSRRRHDNRR-------RSRSKSKPPKRDEKERKRRSPSPKP-TKV 163
Query: 122 GVFGLSLYTTERDLREVFSRYGPLSGVNV-VYDQRTGRSRGFAFVYFERIDDSKEAMERA 180
+ L+ T+ + E+FS YG + +++ V S+G+A+V FE D++++A++
Sbjct: 164 HIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHM 223
Query: 181 NGMELDGRRI 190
+G ++DG+ I
Sbjct: 224 DGGQIDGQEI 233
Score = 32.7 bits (73), Expect = 0.37
Identities = 24/55 (43%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 25 PARVKSESRSGSRSPSRVSKHSESHSRSRSKSRSRSRRHSHRRYTRSRSHSHSHR 79
P R+ RSP R+ + S S R RS R RSR RR+ RSRS S+S R
Sbjct: 253 PRRMLPPPPMWRRSPPRMRRRSRS-PRRRSPVRRRSRSPGRRRH-RSRSSSNSSR 305
Score = 30.4 bits (67), Expect = 1.8
Identities = 20/36 (55%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 70 RSRSHSHSHRRRS--RSRSYTPEYRRRRSRSHSPMS 103
R R S S RRRS R RS +P RR RSRS S S
Sbjct: 269 RMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSSSNSS 304
>gi|153252068 testes-specific heterogenous nuclear ribonucleoprotein
G-T [Homo sapiens]
Length = 392
Score = 73.2 bits (178), Expect = 2e-13
Identities = 58/148 (39%), Positives = 73/148 (49%), Gaps = 15/148 (10%)
Query: 121 LGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERA 180
L + GL+L T E+ L F +YG + V ++ D+ T +SRGFAFV FE D+K A
Sbjct: 10 LFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKAAARDM 69
Query: 181 NGMELDGRRIRVDYSITKRA-----HTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGRRRD 235
NG LDG+ I+V + TK A P P GRP G GGGGG RR
Sbjct: 70 NGKSLDGKAIKVAQA-TKPAFESSRRGPPPPRSRGRPRFL------RGTRGGGGGPRRSP 122
Query: 236 SYYDRGYDRGYDRYEDYDYRYRRRSPSP 263
S D GY D+D R R+P P
Sbjct: 123 SRGGPDDDGGYT--ADFDLR-PSRAPMP 147
>gi|169166609 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 6 [Homo sapiens]
Length = 305
Score = 72.4 bits (176), Expect = 4e-13
Identities = 78/288 (27%), Positives = 119/288 (41%), Gaps = 50/288 (17%)
Query: 2 SDVEENNFEGRESRSQSKSPTGTPARVKSESRSGSRSPSRVSKHSESHSRSRSKSRSRSR 61
S+ + + R+ RS S + T +R S S SGS + + S S S S S S+S S S
Sbjct: 53 SEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSAS-SRSGSSST 111
Query: 62 RHSHRRYTRSRSHSHSHRRRSRSRSYTPEYRRRRSRSHSPMSNRRRHTGSRANPDPNTCL 121
S + S S S S RR R R RS+S P + + +P P T +
Sbjct: 112 SRSSSSSSSSGSPSPSRRRHDNRR-------RSRSKSKPPKRDEKERKRRSPSPKP-TKV 163
Query: 122 GVFGLSLYTTERDLREVFSRYGPLSGVNV-VYDQRTGRSRGFAFVYFERIDDSKEAMERA 180
+ L+ T+ + E+FS YG + +++ V S+G+A V FE D++++A++
Sbjct: 164 HIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHM 223
Query: 181 NGMELDGRRIRVDYSIT------------KRAHTPTPGIYMGRPTHSGGGGGGGGGGGGG 228
+G ++DG+ I + R P P +++ P
Sbjct: 224 DGGQIDGQEITATVVLAPWPRPTPRRFSPPRRMLPPPPMWLRSPPRM------------- 270
Query: 229 GGGRRRDSYYDRGYDRGYDRYEDYDYRYRRRSPSPYYSRYRSRSRSRS 276
RRR R RRRS SP R+RSRS S S
Sbjct: 271 ---RRR------------SRSPRRRSPVRRRSRSPGRRRHRSRSSSNS 303
Score = 30.4 bits (67), Expect = 1.8
Identities = 20/36 (55%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 70 RSRSHSHSHRRRS--RSRSYTPEYRRRRSRSHSPMS 103
R R S S RRRS R RS +P RR RSRS S S
Sbjct: 269 RMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSSSNSS 304
>gi|239752336 PREDICTED: similar to RNA binding motif protein,
X-linked [Homo sapiens]
Length = 138
Score = 72.4 bits (176), Expect = 4e-13
Identities = 41/105 (39%), Positives = 58/105 (55%), Gaps = 5/105 (4%)
Query: 125 GLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGME 184
GL+ T ++ L VF +YG + V+++ D T +SRGFAF+ FER D+K+A NG
Sbjct: 14 GLNTETNKKALEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPADAKDAARDMNGKS 73
Query: 185 LDGRRIRVDYSI-----TKRAHTPTPGIYMGRPTHSGGGGGGGGG 224
LDG+ I+V+ + + R P P G P GG GG GG
Sbjct: 74 LDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRVLRGGRGGSGG 118
>gi|113415994 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 2 [Homo sapiens]
Length = 305
Score = 72.4 bits (176), Expect = 4e-13
Identities = 78/288 (27%), Positives = 119/288 (41%), Gaps = 50/288 (17%)
Query: 2 SDVEENNFEGRESRSQSKSPTGTPARVKSESRSGSRSPSRVSKHSESHSRSRSKSRSRSR 61
S+ + + R+ RS S + T +R S S SGS + + S S S S S S+S S S
Sbjct: 53 SEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSAS-SRSGSSST 111
Query: 62 RHSHRRYTRSRSHSHSHRRRSRSRSYTPEYRRRRSRSHSPMSNRRRHTGSRANPDPNTCL 121
S + S S S S RR R R RS+S P + + +P P T +
Sbjct: 112 SRSSSSSSSSGSPSPSRRRHDNRR-------RSRSKSKPPKRDEKERKRRSPSPKP-TKV 163
Query: 122 GVFGLSLYTTERDLREVFSRYGPLSGVNV-VYDQRTGRSRGFAFVYFERIDDSKEAMERA 180
+ L+ T+ + E+FS YG + +++ V S+G+A V FE D++++A++
Sbjct: 164 HIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHM 223
Query: 181 NGMELDGRRIRVDYSIT------------KRAHTPTPGIYMGRPTHSGGGGGGGGGGGGG 228
+G ++DG+ I + R P P +++ P
Sbjct: 224 DGGQIDGQEITATVVLAPWPRPTPRRFSPPRRMLPPPPMWLRSPPRM------------- 270
Query: 229 GGGRRRDSYYDRGYDRGYDRYEDYDYRYRRRSPSPYYSRYRSRSRSRS 276
RRR R RRRS SP R+RSRS S S
Sbjct: 271 ---RRR------------SRSPRRRSPVRRRSRSPGRRRHRSRSSSNS 303
Score = 30.4 bits (67), Expect = 1.8
Identities = 20/36 (55%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 70 RSRSHSHSHRRRS--RSRSYTPEYRRRRSRSHSPMS 103
R R S S RRRS R RS +P RR RSRS S S
Sbjct: 269 RMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSSSNSS 304
>gi|239746849 PREDICTED: hypothetical protein XP_002343863 [Homo
sapiens]
Length = 138
Score = 72.4 bits (176), Expect = 4e-13
Identities = 41/105 (39%), Positives = 58/105 (55%), Gaps = 5/105 (4%)
Query: 125 GLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGME 184
GL+ T ++ L VF +YG + V+++ D T +SRGFAF+ FER D+K+A NG
Sbjct: 14 GLNTETNKKALEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPADAKDAARDMNGKS 73
Query: 185 LDGRRIRVDYSI-----TKRAHTPTPGIYMGRPTHSGGGGGGGGG 224
LDG+ I+V+ + + R P P G P GG GG GG
Sbjct: 74 LDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRVLRGGRGGSGG 118
>gi|15055543 splicing factor, arginine/serine-rich 2B [Homo sapiens]
Length = 282
Score = 72.4 bits (176), Expect = 4e-13
Identities = 57/162 (35%), Positives = 71/162 (43%), Gaps = 17/162 (10%)
Query: 121 LGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERA 180
L V L+ T+ LR VF +YG + V + + T RGFAFV F D+++A
Sbjct: 16 LKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAM 75
Query: 181 NGMELDGRRIRVDYSITKRAHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGRRRDSYYDR 240
+G ELDGR +RV + + P G P G GGG GRR SY R
Sbjct: 76 DGAELDGRELRV--QVARYGRRDLPRSRQGEPR---------GRSRGGGYGRRSRSYGRR 124
Query: 241 GYDRGYDRYEDYDYRYRRRSPSPYYSRYRSRSRSRSYSPRRY 282
R +R R R PS SR RSR R YS Y
Sbjct: 125 ------SRSPRRRHRSRSRGPSCSRSRSRSRYRGSRYSRSPY 160
Score = 47.4 bits (111), Expect = 1e-05
Identities = 29/62 (46%), Positives = 37/62 (59%)
Query: 14 SRSQSKSPTGTPARVKSESRSGSRSPSRVSKHSESHSRSRSKSRSRSRRHSHRRYTRSRS 73
SRS SKS + T +R S S+S S S+ S S S SRSRS S +RS +R ++SRS
Sbjct: 206 SRSHSKSGSSTSSRSASTSKSSSARRSKSSSVSRSRSRSRSSSMTRSPPRVSKRKSKSRS 265
Query: 74 HS 75
S
Sbjct: 266 RS 267
Score = 46.2 bits (108), Expect = 3e-05
Identities = 44/124 (35%), Positives = 60/124 (48%), Gaps = 18/124 (14%)
Query: 12 RESRSQSKSPTGTPARVKSESRSG-------SRSPSRVSKHSES-HSRSRSK------SR 57
R RS+S+ P+ + +R +S R SRSP S++S S +SRSR + S
Sbjct: 130 RRHRSRSRGPSCSRSRSRSRYRGSRYSRSPYSRSPYSRSRYSRSPYSRSRYRESRYGGSH 189
Query: 58 SRSRRHSHRRYTR---SRSHSHS-HRRRSRSRSYTPEYRRRRSRSHSPMSNRRRHTGSRA 113
S +S+ RY+R SRSHS S SRS S + RRS+S S +R R S
Sbjct: 190 YSSSGYSNSRYSRYHSSRSHSKSGSSTSSRSASTSKSSSARRSKSSSVSRSRSRSRSSSM 249
Query: 114 NPDP 117
P
Sbjct: 250 TRSP 253
Score = 38.1 bits (87), Expect = 0.009
Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 8/92 (8%)
Query: 30 SESRSGSRSPSRVSKHSESHSRSRSKSRSRSRRHSHRRYTRSRSHSHSHRRRSRSRSYTP 89
S S S SR S++ S S S+S S + SR S + + +R S RSRSRS
Sbjct: 188 SHYSSSGYSNSRYSRYHSSRSHSKSGSSTSSRSASTSKSSSARRSKSSSVSRSRSRS--- 244
Query: 90 EYRRRRSRSHSP--MSNRRRHTGSRANPDPNT 119
R S + SP +S R+ + SR+ P +
Sbjct: 245 ---RSSSMTRSPPRVSKRKSKSRSRSKRPPKS 273
Score = 35.8 bits (81), Expect = 0.043
Identities = 38/114 (33%), Positives = 46/114 (40%), Gaps = 16/114 (14%)
Query: 12 RESRSQSKSPTGTPARVKSESRSGSRSPSRVSKHSESHSRSRSKSRSRSRRHSHRRYTRS 71
R+ + +S G R SRSP R SRSR S SRSR S R +R
Sbjct: 101 RQGEPRGRSRGGGYGRRSRSYGRRSRSPRR-----RHRSRSRGPSCSRSRSRSRYRGSRY 155
Query: 72 RSHSHSHRRRSRSRSYTPEYRRRRSR---------SHSPMSNRR--RHTGSRAN 114
+S SRSR Y R R R S S SN R R+ SR++
Sbjct: 156 SRSPYSRSPYSRSRYSRSPYSRSRYRESRYGGSHYSSSGYSNSRYSRYHSSRSH 209
Score = 30.8 bits (68), Expect = 1.4
Identities = 42/139 (30%), Positives = 54/139 (38%), Gaps = 22/139 (15%)
Query: 10 EGRESRSQSK--SPTGTPARVKSESRSGSRSPSRVSKHSESHSRSRSKSRSRSRRHSHRR 67
+GRE R Q P + E R SR + S S+ R +SRS RRH R
Sbjct: 81 DGRELRVQVARYGRRDLPRSRQGEPRGRSRGGG-YGRRSRSYGR---RSRSPRRRHRSRS 136
Query: 68 Y----TRSRSHSHSHRRRSRSRSYTPEYRRRRSRSHSPMSNRRRHTGSRANPDPNTCLGV 123
+RSRS S R Y+ R S SP S R R+ SR
Sbjct: 137 RGPSCSRSRSRSRYRGSRYSRSPYSRSPYSRSRYSRSPYS-RSRYRESR----------- 184
Query: 124 FGLSLYTTERDLREVFSRY 142
+G S Y++ +SRY
Sbjct: 185 YGGSHYSSSGYSNSRYSRY 203
>gi|42741682 zinc finger protein 265 isoform 2 [Homo sapiens]
Length = 320
Score = 72.0 bits (175), Expect = 5e-13
Identities = 52/128 (40%), Positives = 71/128 (55%), Gaps = 8/128 (6%)
Query: 2 SDVEENNFEGRESRSQSKSPTGTPARVKSESRSGSRSPSRVSKHSESHSRSRSKSRSRSR 61
S+ E++N + RS+SKS + + +R S S S S S SR S S S S+S+SRS SR
Sbjct: 188 SEEEDSNKKKSNRRSRSKSRS-SHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSR 246
Query: 62 RHSHRRYTRSRSHSHSHRRRS--RSRSY-----TPEYRRRRSRSHSPMSNRRRHTGSRAN 114
S R ++SRS S SHR S R RSY +PE R+RSRS S S R+ +R+
Sbjct: 247 ERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRKKRRTRSR 306
Query: 115 PDPNTCLG 122
+ +G
Sbjct: 307 SPESQVIG 314
Score = 28.5 bits (62), Expect = 6.9
Identities = 19/44 (43%), Positives = 21/44 (47%)
Query: 235 DSYYDRGYDRGYDRYEDYDYRYRRRSPSPYYSRYRSRSRSRSYS 278
DS + R + R RS SP SR RSRSRSRS S
Sbjct: 192 DSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSS 235
>gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo
sapiens]
Length = 378
Score = 71.2 bits (173), Expect = 9e-13
Identities = 49/144 (34%), Positives = 73/144 (50%), Gaps = 20/144 (13%)
Query: 123 VFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANG 182
V G+ T E +LR+ F +YG + + V+ D+++G+ RGFAFV F+ D+ + +
Sbjct: 130 VGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDD-HDTVDKIVVQKY 188
Query: 183 MELDGRRIRVDYSITK---------RAHTPTPGIYMGRPTHSGGGGG--------GGGGG 225
++G V +++K R G +MGR + GGGGG GG GG
Sbjct: 189 HTINGHNCEVKKALSKQEMQSAGSQRGRGGGSGNFMGRGGNFGGGGGNFGRGGNFGGRGG 248
Query: 226 GGGGGGRRRDSYYDRGYDRGYDRY 249
GGGGG R SY G D GY+ +
Sbjct: 249 YGGGGGGSRGSY--GGGDGGYNGF 270
Score = 53.5 bits (127), Expect = 2e-07
Identities = 39/121 (32%), Positives = 59/121 (48%), Gaps = 12/121 (9%)
Query: 101 PMSNRRRHTGSRANPDPNTC-----LGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQR 155
P S RRR DP L + GLS TT+ LRE F ++G L+ V+ D +
Sbjct: 12 PDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQ 71
Query: 156 TGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVDYSITKR------AHTPTPGIYM 209
T RSRGF FV + +++ AM A ++DGR + ++++ AH I++
Sbjct: 72 TKRSRGFGFVTYSCVEEVDAAM-CARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFV 130
Query: 210 G 210
G
Sbjct: 131 G 131
Score = 40.8 bits (94), Expect = 0.001
Identities = 34/104 (32%), Positives = 42/104 (40%), Gaps = 27/104 (25%)
Query: 206 GIYMGRPTHSGGGGGGGGG------GGGGGGGRRRDSYYDRGYDRG--------YDRYED 251
G Y G P +S GG GGGG GGG GGG D Y + G G Y+ + +
Sbjct: 275 GNYGGGPGYSSRGGYGGGGPGYGNQGGGYGGGGGYDGYNEGGNFGGGNYGGGGNYNDFGN 334
Query: 252 YDYRYR-------------RRSPSPYYSRYRSRSRSRSYSPRRY 282
Y + + R S SPY Y S S Y RR+
Sbjct: 335 YSGQQQSNYGPMKGGSFGGRSSGSPYGGGYGSGGGSGGYGSRRF 378
>gi|223890219 RNA binding motif protein, X-linked-like 3 [Homo
sapiens]
Length = 1067
Score = 70.9 bits (172), Expect = 1e-12
Identities = 57/153 (37%), Positives = 75/153 (49%), Gaps = 18/153 (11%)
Query: 121 LGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERA 180
L + GL+L T E+ L+ F +YG + V ++ D++T +SRGFAFV FE D+K A
Sbjct: 10 LFIGGLNLKTDEKALKAEFGKYGHIIKVFLMKDRKTNKSRGFAFVTFESPADAKAAARDM 69
Query: 181 NGMELDGRRIRVDYSI-----TKRAHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGRRRD 235
NG LDG+ I V +I + R PTPG SG GGG +R
Sbjct: 70 NGKYLDGKAIMVAQTIKPAFKSSRWVPPTPG--------SGSRSRFSHRTRGGGSSPQRP 121
Query: 236 SYYDRGYD-RGYDRYED-YDYRY---RRRSPSP 263
R D RGY Y D + YR R+R P P
Sbjct: 122 PSQGRPDDGRGYAGYFDLWPYRAPMPRKRGPPP 154
Score = 32.0 bits (71), Expect = 0.63
Identities = 71/306 (23%), Positives = 93/306 (30%), Gaps = 52/306 (16%)
Query: 5 EENNFEGRESRSQSKSPTGTPARVKSESRSGSRSPSRVSKHSESHSRSRSKSRSRSRRHS 64
EE ++ S+ +S P V ++ S SP S S S S+S
Sbjct: 330 EEYQGNSPDACSEGRSSEALPV-VLPDAYSRDHSPKAYSGGRSSSSNGYSRSDRYGEEGC 388
Query: 65 HRRYTRSRSHSHSHRRRSRSRSY--------TPEYRRRRSRSHSPMS-NRRRHTGSRANP 115
+ Y +HS R S S SY Y R RSH S R SR
Sbjct: 389 YEEYRGRSPDAHSGGRNSSSNSYGQSHHYGGEGRYEEYRGRSHEARSGGRSTDAHSRGRS 448
Query: 116 DPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRG------FAFVYFER 169
D Y+ D S + G Y++ GRS Y
Sbjct: 449 D----------DAYSGGHD----SSSWSDCCGGGGRYEEYQGRSLDANSGGCSPEAYSGG 494
Query: 170 IDDSKEAMERANGMELDGRRIRVDYSITKRAHTPTPGIYMGRPTHSGGGGGGGGGGGGGG 229
D+S + G + R +S+ + +P THSGG G
Sbjct: 495 HDNSSWSDRYGVGGHYEENR---GHSLDANSGGRSP------DTHSGGHSSSSNSYGQSH 545
Query: 230 --GGRRRDSYYDRGYDR--------GYDRYEDYDYRYRRRSPSPYYSRYRSRS---RSRS 276
GG R Y R +D Y D + R Y YR RS S
Sbjct: 546 RYGGEGRYEYRGRSHDAHSGGCSADAYSGGHDSSSQSNRYGGGGCYEEYRGRSLDANSGG 605
Query: 277 YSPRRY 282
SP Y
Sbjct: 606 RSPNAY 611
Score = 29.3 bits (64), Expect = 4.1
Identities = 62/270 (22%), Positives = 91/270 (33%), Gaps = 35/270 (12%)
Query: 5 EENNFEGRESRSQSKSPTGTPARVKSESRSGSRSPSRVSKHSESHSRSRSKSRSRSRRHS 64
EE ++ S +SP S SR+ + + HS + +S
Sbjct: 780 EEYRGRSLDANSGGRSPNAYSGGHNSSSRNDPCRGGGRYEENRGHSLDANSGGHSPNAYS 839
Query: 65 HRRYTRSRSHSHSHRRRSRSRSYTPEYRRRRSRSHSPMSNRRRHTGSRANPDPNTCLGVF 124
R + S S+ SHR Y R RSH S R +PD ++ G
Sbjct: 840 GGRDSSSNSYDRSHRYGGGG-----HYEEYRGRSHDTHSRGR-------SPDAHS--GDH 885
Query: 125 GLSLYTTERDLREVFSRYGPLS--GVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANG 182
Y+ RD + YG G Y++ GRS A+ ++ S + R++
Sbjct: 886 YTEAYSRGRD--SFSNSYGRSDHYGRGGCYEEYQGRSPN-AYGGGRGLNSSNNSHGRSHR 942
Query: 183 MELDGRRIRVDYSITKRAHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGRRRDSYYDRGY 242
GR + P+P + G S G GGGG +Y+
Sbjct: 943 YGGGGR--------YEEYRGPSPDAHSGGRDSSIKSYGLSDRYGGGG-------HYEEYQ 987
Query: 243 DRGYDRYE-DYDYRYRRRSPSPYYSRYRSR 271
D Y D+D S YSR R R
Sbjct: 988 GSLPDAYSGDHDRSSNSYGRSDRYSRGRDR 1017
Score = 28.5 bits (62), Expect = 6.9
Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 14/69 (20%)
Query: 219 GGGGGGGGGGGGGRRRDSYYDRGYDR--------GYDRYEDY-----DYRYRRRSPSPYY 265
GGGG GR D+Y G+D G RYE+Y D RSP+ Y
Sbjct: 742 GGGGRSLDANSSGRLPDAY-SGGHDSSSRSHRYGGGGRYEEYRGRSLDANSGGRSPNAYS 800
Query: 266 SRYRSRSRS 274
+ S SR+
Sbjct: 801 GGHNSSSRN 809
>gi|42741684 zinc finger protein 265 isoform 1 [Homo sapiens]
Length = 330
Score = 70.9 bits (172), Expect = 1e-12
Identities = 53/121 (43%), Positives = 70/121 (57%), Gaps = 10/121 (8%)
Query: 2 SDVEENNFEGRESRSQSKSPTGTPARVKSESRSGSRSPSRVSKHSESHSRSRSKSRSRSR 61
S+ E++N + RS+SKS + + +R S S S S S SR S S S S+S+SRS SR
Sbjct: 188 SEEEDSNKKKSNRRSRSKSRS-SHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSR 246
Query: 62 RHSHRRYTRSRSHSHSHRRRS--RSRSY-----TPEYRRRRSRSHSPMS--NRRRHTGSR 112
S R ++SRS S SHR S R RSY +PE R+RSRS S S ++R T SR
Sbjct: 247 ERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRKKRRTRSR 306
Query: 113 A 113
+
Sbjct: 307 S 307
Score = 63.9 bits (154), Expect = 1e-10
Identities = 47/121 (38%), Positives = 62/121 (51%), Gaps = 27/121 (22%)
Query: 14 SRSQSKSPTGTPARVKSESRSGSRSPSRVSKHSESHSRSR-SKSRSRSRRHS-------- 64
S S+S SP+ + +R +S SRS S S SR S SRSR SKSRS SR H
Sbjct: 213 SSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRGSSSPRKR 272
Query: 65 -----------HRRYTRSRSHSHSHRRRSRSRSYTPEYRRRRSRSHSPMSNRRRHTGSRA 113
+R+ +RSRS S R++ R+RS +PE R R S S H+GSR+
Sbjct: 273 SYSSSSSSPERNRKRSRSRSSSSGDRKKRRTRSRSPERRHRSSSGSS-------HSGSRS 325
Query: 114 N 114
+
Sbjct: 326 S 326
Score = 46.2 bits (108), Expect = 3e-05
Identities = 34/87 (39%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Query: 2 SDVEENNFEGRESRSQSKSPTGTPARVKSESRSGSRSPSRVSKHSESHSRS---RSKSRS 58
S E + G +SRS S+S G+ + K S S SP R K S S S S R K R+
Sbjct: 244 SSRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRKKRRT 303
Query: 59 RSRRHSHRRYTRSRSHSHSHRRRSRSR 85
RS R RR+ S SHS R S +
Sbjct: 304 RS-RSPERRHRSSSGSSHSGSRSSSKK 329
Score = 45.1 bits (105), Expect = 7e-05
Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 1/115 (0%)
Query: 1 MSDVEENNFEGRESRSQSKSPTGTPARVKSESRSGSRSPSRVSKHSESHSRSRSKSRSRS 60
+ +VE+ EG E + E + + + E ++ +S RSRS
Sbjct: 145 LKEVEDKESEGEEEDEDEDLSKYKLDEDEDEDDADLSKYNLDASEEEDSNKKKSNRRSRS 204
Query: 61 R-RHSHRRYTRSRSHSHSHRRRSRSRSYTPEYRRRRSRSHSPMSNRRRHTGSRAN 114
+ R SH R + S S R RSRSRS + + RSRS S +R R + SR++
Sbjct: 205 KSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSS 259
Score = 28.5 bits (62), Expect = 6.9
Identities = 19/44 (43%), Positives = 21/44 (47%)
Query: 235 DSYYDRGYDRGYDRYEDYDYRYRRRSPSPYYSRYRSRSRSRSYS 278
DS + R + R RS SP SR RSRSRSRS S
Sbjct: 192 DSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSS 235
>gi|113415504 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 70.5 bits (171), Expect = 2e-12
Identities = 77/288 (26%), Positives = 118/288 (40%), Gaps = 50/288 (17%)
Query: 2 SDVEENNFEGRESRSQSKSPTGTPARVKSESRSGSRSPSRVSKHSESHSRSRSKSRSRSR 61
S+ + + R+ S S + T +R S S SGS + + S S S S S S+S S S
Sbjct: 53 SEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSAS-SRSGSSST 111
Query: 62 RHSHRRYTRSRSHSHSHRRRSRSRSYTPEYRRRRSRSHSPMSNRRRHTGSRANPDPNTCL 121
S + S S S S RR R R RS+S P + + +P P T +
Sbjct: 112 SRSSSSSSSSGSPSPSRRRHDNRR-------RSRSKSKPPKRDEKERKRRSPSPKP-TKV 163
Query: 122 GVFGLSLYTTERDLREVFSRYGPLSGVNV-VYDQRTGRSRGFAFVYFERIDDSKEAMERA 180
+ L+ T+ + E+FS YG + +++ V S+G+A V FE D++++A++
Sbjct: 164 HIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHM 223
Query: 181 NGMELDGRRIRVDYSIT------------KRAHTPTPGIYMGRPTHSGGGGGGGGGGGGG 228
+G ++DG+ I + R P P +++ P
Sbjct: 224 DGGQIDGQEITATVVLAPWPRPTPRRFSPPRRMLPPPPMWLRSPPRM------------- 270
Query: 229 GGGRRRDSYYDRGYDRGYDRYEDYDYRYRRRSPSPYYSRYRSRSRSRS 276
RRR R RRRS SP R+RSRS S S
Sbjct: 271 ---RRR------------SRSPRRRSPVRRRSRSPGRRRHRSRSSSNS 303
Score = 30.4 bits (67), Expect = 1.8
Identities = 20/36 (55%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 70 RSRSHSHSHRRRS--RSRSYTPEYRRRRSRSHSPMS 103
R R S S RRRS R RS +P RR RSRS S S
Sbjct: 269 RMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSSSNSS 304
Score = 28.9 bits (63), Expect = 5.3
Identities = 22/85 (25%), Positives = 28/85 (32%)
Query: 197 TKRAHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGRRRDSYYDRGYDRGYDRYEDYDYRY 256
T++ H+ + G R S G G G S R R
Sbjct: 62 TRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSS 121
Query: 257 RRRSPSPYYSRYRSRSRSRSYSPRR 281
SPS R RSRS+S P+R
Sbjct: 122 GSPSPSRRRHDNRRRSRSKSKPPKR 146
>gi|169166499 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 70.5 bits (171), Expect = 2e-12
Identities = 77/288 (26%), Positives = 118/288 (40%), Gaps = 50/288 (17%)
Query: 2 SDVEENNFEGRESRSQSKSPTGTPARVKSESRSGSRSPSRVSKHSESHSRSRSKSRSRSR 61
S+ + + R+ S S + T +R S S SGS + + S S S S S S+S S S
Sbjct: 53 SEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSAS-SRSGSSST 111
Query: 62 RHSHRRYTRSRSHSHSHRRRSRSRSYTPEYRRRRSRSHSPMSNRRRHTGSRANPDPNTCL 121
S + S S S S RR R R RS+S P + + +P P T +
Sbjct: 112 SRSSSSSSSSGSPSPSRRRHDNRR-------RSRSKSKPPKRDEKERKRRSPSPKP-TKV 163
Query: 122 GVFGLSLYTTERDLREVFSRYGPLSGVNV-VYDQRTGRSRGFAFVYFERIDDSKEAMERA 180
+ L+ T+ + E+FS YG + +++ V S+G+A V FE D++++A++
Sbjct: 164 HIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHM 223
Query: 181 NGMELDGRRIRVDYSIT------------KRAHTPTPGIYMGRPTHSGGGGGGGGGGGGG 228
+G ++DG+ I + R P P +++ P
Sbjct: 224 DGGQIDGQEITATVVLAPWPRPTPRRFSPPRRMLPPPPMWLRSPPRM------------- 270
Query: 229 GGGRRRDSYYDRGYDRGYDRYEDYDYRYRRRSPSPYYSRYRSRSRSRS 276
RRR R RRRS SP R+RSRS S S
Sbjct: 271 ---RRR------------SRSPRRRSPVRRRSRSPGRRRHRSRSSSNS 303
Score = 30.4 bits (67), Expect = 1.8
Identities = 20/36 (55%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 70 RSRSHSHSHRRRS--RSRSYTPEYRRRRSRSHSPMS 103
R R S S RRRS R RS +P RR RSRS S S
Sbjct: 269 RMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSSSNSS 304
Score = 28.9 bits (63), Expect = 5.3
Identities = 22/85 (25%), Positives = 28/85 (32%)
Query: 197 TKRAHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGRRRDSYYDRGYDRGYDRYEDYDYRY 256
T++ H+ + G R S G G G S R R
Sbjct: 62 TRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSS 121
Query: 257 RRRSPSPYYSRYRSRSRSRSYSPRR 281
SPS R RSRS+S P+R
Sbjct: 122 GSPSPSRRRHDNRRRSRSKSKPPKR 146
>gi|113415498 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 70.5 bits (171), Expect = 2e-12
Identities = 77/288 (26%), Positives = 118/288 (40%), Gaps = 50/288 (17%)
Query: 2 SDVEENNFEGRESRSQSKSPTGTPARVKSESRSGSRSPSRVSKHSESHSRSRSKSRSRSR 61
S+ + + R+ S S + T +R S S SGS + + S S S S S S+S S S
Sbjct: 53 SEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSAS-SRSGSSST 111
Query: 62 RHSHRRYTRSRSHSHSHRRRSRSRSYTPEYRRRRSRSHSPMSNRRRHTGSRANPDPNTCL 121
S + S S S S RR R R RS+S P + + +P P T +
Sbjct: 112 SRSSSSSSSSGSPSPSRRRHDNRR-------RSRSKSKPPKRDEKERKRRSPSPKP-TKV 163
Query: 122 GVFGLSLYTTERDLREVFSRYGPLSGVNV-VYDQRTGRSRGFAFVYFERIDDSKEAMERA 180
+ L+ T+ + E+FS YG + +++ V S+G+A V FE D++++A++
Sbjct: 164 HIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHM 223
Query: 181 NGMELDGRRIRVDYSIT------------KRAHTPTPGIYMGRPTHSGGGGGGGGGGGGG 228
+G ++DG+ I + R P P +++ P
Sbjct: 224 DGGQIDGQEITATVVLAPWPRPTPRRFSPPRRMLPPPPMWLRSPPRM------------- 270
Query: 229 GGGRRRDSYYDRGYDRGYDRYEDYDYRYRRRSPSPYYSRYRSRSRSRS 276
RRR R RRRS SP R+RSRS S S
Sbjct: 271 ---RRR------------SRSPRRRSPVRRRSRSPGRRRHRSRSSSNS 303
Score = 30.4 bits (67), Expect = 1.8
Identities = 20/36 (55%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 70 RSRSHSHSHRRRS--RSRSYTPEYRRRRSRSHSPMS 103
R R S S RRRS R RS +P RR RSRS S S
Sbjct: 269 RMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSSSNSS 304
Score = 28.9 bits (63), Expect = 5.3
Identities = 22/85 (25%), Positives = 28/85 (32%)
Query: 197 TKRAHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGRRRDSYYDRGYDRGYDRYEDYDYRY 256
T++ H+ + G R S G G G S R R
Sbjct: 62 TRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSS 121
Query: 257 RRRSPSPYYSRYRSRSRSRSYSPRR 281
SPS R RSRS+S P+R
Sbjct: 122 GSPSPSRRRHDNRRRSRSKSKPPKR 146
>gi|88973230 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 3 [Homo sapiens]
Length = 305
Score = 70.5 bits (171), Expect = 2e-12
Identities = 77/288 (26%), Positives = 118/288 (40%), Gaps = 50/288 (17%)
Query: 2 SDVEENNFEGRESRSQSKSPTGTPARVKSESRSGSRSPSRVSKHSESHSRSRSKSRSRSR 61
S+ + + R+ S S + T +R S S SGS + + S S S S S S+S S S
Sbjct: 53 SEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSAS-SRSGSSST 111
Query: 62 RHSHRRYTRSRSHSHSHRRRSRSRSYTPEYRRRRSRSHSPMSNRRRHTGSRANPDPNTCL 121
S + S S S S RR R R RS+S P + + +P P T +
Sbjct: 112 SRSSSSSSSSGSPSPSRRRHDNRR-------RSRSKSKPPKRDEKERKRRSPSPKP-TKV 163
Query: 122 GVFGLSLYTTERDLREVFSRYGPLSGVNV-VYDQRTGRSRGFAFVYFERIDDSKEAMERA 180
+ L+ T+ + E+FS YG + +++ V S+G+A V FE D++++A++
Sbjct: 164 HIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHM 223
Query: 181 NGMELDGRRIRVDYSIT------------KRAHTPTPGIYMGRPTHSGGGGGGGGGGGGG 228
+G ++DG+ I + R P P +++ P
Sbjct: 224 DGGQIDGQEITATVVLAPWPRPTPRRFSPPRRMLPPPPMWLRSPPRM------------- 270
Query: 229 GGGRRRDSYYDRGYDRGYDRYEDYDYRYRRRSPSPYYSRYRSRSRSRS 276
RRR R RRRS SP R+RSRS S S
Sbjct: 271 ---RRR------------SRSPRRRSPVRRRSRSPGRRRHRSRSSSNS 303
Score = 30.4 bits (67), Expect = 1.8
Identities = 20/36 (55%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 70 RSRSHSHSHRRRS--RSRSYTPEYRRRRSRSHSPMS 103
R R S S RRRS R RS +P RR RSRS S S
Sbjct: 269 RMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSSSNSS 304
Score = 28.9 bits (63), Expect = 5.3
Identities = 22/85 (25%), Positives = 28/85 (32%)
Query: 197 TKRAHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGRRRDSYYDRGYDRGYDRYEDYDYRY 256
T++ H+ + G R S G G G S R R
Sbjct: 62 TRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSS 121
Query: 257 RRRSPSPYYSRYRSRSRSRSYSPRR 281
SPS R RSRS+S P+R
Sbjct: 122 GSPSPSRRRHDNRRRSRSKSKPPKR 146
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.132 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,299,416
Number of Sequences: 37866
Number of extensions: 685393
Number of successful extensions: 28681
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 285
Number of HSP's that attempted gapping in prelim test: 9672
Number of HSP's gapped (non-prelim): 8152
length of query: 282
length of database: 18,247,518
effective HSP length: 101
effective length of query: 181
effective length of database: 14,423,052
effective search space: 2610572412
effective search space used: 2610572412
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.