Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 94429050
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|94429050 SEC22 vesicle trafficking protein homolog B [Homo
sapiens]
(215 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|94429050 SEC22 vesicle trafficking protein homolog B [Homo sa... 426 e-119
gi|14591919 SEC22 vesicle trafficking protein homolog A [Homo sa... 99 3e-21
gi|14591921 SEC22 vesicle trafficking protein homolog C isoform ... 65 3e-11
gi|4759088 SEC22 vesicle trafficking protein homolog C isoform b... 65 3e-11
gi|5032137 vesicle-associated membrane protein 7 isoform 1 [Homo... 63 2e-10
gi|223468574 vesicle-associated membrane protein 7 isoform 2 [Ho... 50 1e-06
gi|5730120 YKT6 v-SNARE protein [Homo sapiens] 44 8e-05
gi|14043026 vesicle-associated membrane protein 8 [Homo sapiens] 39 0.003
gi|4759300 vesicle-associated membrane protein 3 [Homo sapiens] 39 0.004
gi|172072620 vesicle-associated membrane protein 2 (synaptobrevi... 38 0.007
gi|63003894 hypothetical protein LOC154467 [Homo sapiens] 35 0.048
gi|7657673 vesicle-associated membrane protein 1 isoform 1 [Homo... 35 0.048
gi|40549446 vesicle-associated membrane protein 1 isoform 2 [Hom... 35 0.063
gi|9257251 vesicle-associated membrane protein 1 isoform 3 [Homo... 35 0.063
gi|4557529 post-synaptic density protein 95 isoform 1 [Homo sapi... 31 0.70
gi|192447426 post-synaptic density protein 95 isoform 2 [Homo sa... 31 0.70
gi|21630257 Mdm2, transformed 3T3 cell double minute 2, p53 bind... 30 1.2
gi|158508572 nuclear receptor subfamily 3, group C, member 2 [Ho... 29 2.6
gi|41406064 myosin, heavy polypeptide 10, non-muscle [Homo sapiens] 29 3.5
gi|110611228 utrophin [Homo sapiens] 29 3.5
gi|41327691 kinesin-like motor protein C20orf23 [Homo sapiens] 29 3.5
gi|21735548 centrosomal protein 2 [Homo sapiens] 28 4.5
>gi|94429050 SEC22 vesicle trafficking protein homolog B [Homo
sapiens]
Length = 215
Score = 426 bits (1094), Expect = e-119
Identities = 215/215 (100%), Positives = 215/215 (100%)
Query: 1 MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEAGAMT 60
MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEAGAMT
Sbjct: 1 MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEAGAMT 60
Query: 61 FHYIIEQGVCDLVLCEAAFPKTLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDTFIQ 120
FHYIIEQGVCDLVLCEAAFPKTLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDTFIQ
Sbjct: 61 FHYIIEQGVCDLVLCEAAFPKTLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDTFIQ 120
Query: 121 KTKKLYIDSCARRNLGSINTELQDVQRIMVANIEEVLQRGEALSALDSKANNLSSLSKKY 180
KTKKLYIDSCARRNLGSINTELQDVQRIMVANIEEVLQRGEALSALDSKANNLSSLSKKY
Sbjct: 121 KTKKLYIDSCARRNLGSINTELQDVQRIMVANIEEVLQRGEALSALDSKANNLSSLSKKY 180
Query: 181 RQDAKYLNMHSTYAKLAAVAVFFIMLIVYVRFWWL 215
RQDAKYLNMHSTYAKLAAVAVFFIMLIVYVRFWWL
Sbjct: 181 RQDAKYLNMHSTYAKLAAVAVFFIMLIVYVRFWWL 215
>gi|14591919 SEC22 vesicle trafficking protein homolog A [Homo
sapiens]
Length = 307
Score = 99.0 bits (245), Expect = 3e-21
Identities = 58/147 (39%), Positives = 85/147 (57%), Gaps = 7/147 (4%)
Query: 1 MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEAGAMT 60
M+L + RV DGLPL+AS ++ +G +Q+ + K L RKL Q P RCTL+ G
Sbjct: 3 MILSASVIRVRDGLPLSASTDYEQSTG--MQECRKYFKMLSRKL-AQLPDRCTLKTGHYN 59
Query: 61 FHYIIEQGVCDLVLCEAAFPKTLAFAYLEDLHSEFDEQHG-KKVPTVSRPYSFIEFDTFI 119
++I GV ++LC +P LAF++L++L EF + K T RPY FIEFD FI
Sbjct: 60 INFISSLGVSYMMLCTENYPNVLAFSFLDELQKEFITTYNMMKTNTAVRPYCFIEFDNFI 119
Query: 120 QKTKKLYIDS---CARRNLGSINTELQ 143
Q+TK+ Y + + NL + TE++
Sbjct: 120 QRTKQRYNNPRSLSTKINLSDMQTEIK 146
>gi|14591921 SEC22 vesicle trafficking protein homolog C isoform a
[Homo sapiens]
Length = 303
Score = 65.5 bits (158), Expect = 3e-11
Identities = 41/124 (33%), Positives = 63/124 (50%), Gaps = 4/124 (3%)
Query: 1 MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEAGAMT 60
++ + RV DGLPL+AS D +D +++ + K L +L Q P R + E +
Sbjct: 3 VIFFACVVRVRDGLPLSAST--DFYHTQDFLEWRRRLKSLALRL-AQYPGRGSAEGCDFS 59
Query: 61 FHYIIEQGVCDLVLCEAAFPKTLAFAYLEDLHSEFDEQHGKK-VPTVSRPYSFIEFDTFI 119
H+ V + +C P +AF +LE L EF + + SRPY+F+EFD+ I
Sbjct: 60 IHFSSFGDVACMAICSCQCPAAMAFCFLETLWWEFTASYDTTCIGLASRPYAFLEFDSII 119
Query: 120 QKTK 123
QK K
Sbjct: 120 QKVK 123
>gi|4759088 SEC22 vesicle trafficking protein homolog C isoform b
[Homo sapiens]
Length = 250
Score = 65.5 bits (158), Expect = 3e-11
Identities = 41/124 (33%), Positives = 63/124 (50%), Gaps = 4/124 (3%)
Query: 1 MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEAGAMT 60
++ + RV DGLPL+AS D +D +++ + K L +L Q P R + E +
Sbjct: 3 VIFFACVVRVRDGLPLSAST--DFYHTQDFLEWRRRLKSLALRL-AQYPGRGSAEGCDFS 59
Query: 61 FHYIIEQGVCDLVLCEAAFPKTLAFAYLEDLHSEFDEQHGKK-VPTVSRPYSFIEFDTFI 119
H+ V + +C P +AF +LE L EF + + SRPY+F+EFD+ I
Sbjct: 60 IHFSSFGDVACMAICSCQCPAAMAFCFLETLWWEFTASYDTTCIGLASRPYAFLEFDSII 119
Query: 120 QKTK 123
QK K
Sbjct: 120 QKVK 123
>gi|5032137 vesicle-associated membrane protein 7 isoform 1 [Homo
sapiens]
Length = 220
Score = 62.8 bits (151), Expect = 2e-10
Identities = 42/174 (24%), Positives = 81/174 (46%), Gaps = 3/174 (1%)
Query: 38 KQLFRKLNEQSPTRCTLEAGAMTFHYIIEQGVCDLVLCEAAFPKTLAFAYLEDLHSEFDE 97
+Q+ K+ ++ + T G FHYI + + L + + F ++ AF +L ++ F
Sbjct: 30 EQILAKIPSEN-NKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFNFLNEIKKRFQT 88
Query: 98 QHGKKVPTVSRPYSF-IEFDTFIQKTKKLYIDSCARRNLGSINTELQDVQRIMVANIEEV 156
+G + T + PY+ EF + + K + ++ + ++ +++ IMV NI+ V
Sbjct: 89 TYGSRAQT-ALPYAMNSEFSSVLAAQLKHHSENKGLDKVMETQAQVDELKGIMVRNIDLV 147
Query: 157 LQRGEALSALDSKANNLSSLSKKYRQDAKYLNMHSTYAKLAAVAVFFIMLIVYV 210
QRGE L L K NL S ++ ++ L L + I+ IV++
Sbjct: 148 AQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNLKLTIIIIIVSIVFI 201
>gi|223468574 vesicle-associated membrane protein 7 isoform 2 [Homo
sapiens]
Length = 179
Score = 50.1 bits (118), Expect = 1e-06
Identities = 33/133 (24%), Positives = 62/133 (46%), Gaps = 2/133 (1%)
Query: 79 FPKTLAFAYLEDLHSEFDEQHGKKVPTVSRPYSF-IEFDTFIQKTKKLYIDSCARRNLGS 137
F ++ AF +L ++ F +G + T + PY+ EF + + K + ++ +
Sbjct: 29 FERSRAFNFLNEIKKRFQTTYGSRAQT-ALPYAMNSEFSSVLAAQLKHHSENKGLDKVME 87
Query: 138 INTELQDVQRIMVANIEEVLQRGEALSALDSKANNLSSLSKKYRQDAKYLNMHSTYAKLA 197
++ +++ IMV NI+ V QRGE L L K NL S ++ ++ L L
Sbjct: 88 TQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNLK 147
Query: 198 AVAVFFIMLIVYV 210
+ I+ IV++
Sbjct: 148 LTIIIIIVSIVFI 160
>gi|5730120 YKT6 v-SNARE protein [Homo sapiens]
Length = 198
Score = 44.3 bits (103), Expect = 8e-05
Identities = 35/161 (21%), Positives = 71/161 (44%), Gaps = 6/161 (3%)
Query: 30 LQQYQSQAKQLFRKLNEQSPTRCTLEAGAMTFHYIIEQGVCDLVLCEAAFPKTLAFAYLE 89
+Q++ + QL + + + E + Y+ + +V+ + +P +AF LE
Sbjct: 36 VQEFMTFTSQLIVERSSKGTRASVKEQDYLCHVYVRNDSLAGVVIADNEYPSRVAFTLLE 95
Query: 90 DLHSEFDEQHGKKVPTVSRPYS--FIEFDTFIQKTKKLYIDSCARRNLGSINTELQDVQR 147
+ EF +Q + V P + + D + + Y + + + EL + +
Sbjct: 96 KVLDEFSKQVDRIDWPVGSPATIHYPALDGHLSR----YQNPREADPMTKVQAELDETKI 151
Query: 148 IMVANIEEVLQRGEALSALDSKANNLSSLSKKYRQDAKYLN 188
I+ +E +L+RGE L L SK+ L + SK + + A+ N
Sbjct: 152 ILHNTMESLLERGEKLDDLVSKSEVLGTQSKAFYKTARKQN 192
>gi|14043026 vesicle-associated membrane protein 8 [Homo sapiens]
Length = 100
Score = 38.9 bits (89), Expect = 0.003
Identities = 16/76 (21%), Positives = 42/76 (55%)
Query: 137 SINTELQDVQRIMVANIEEVLQRGEALSALDSKANNLSSLSKKYRQDAKYLNMHSTYAKL 196
++ +E++ V+ IM N+E +L RGE L L +K +L + S+ ++ ++ + + +
Sbjct: 15 NLQSEVEGVKNIMTQNVERILARGENLEHLRNKTEDLEATSEHFKTTSQKVARKFWWKNV 74
Query: 197 AAVAVFFIMLIVYVRF 212
+ + +++ + + F
Sbjct: 75 KMIVLICVIVFIIILF 90
>gi|4759300 vesicle-associated membrane protein 3 [Homo sapiens]
Length = 100
Score = 38.5 bits (88), Expect = 0.004
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 131 ARRNLGSINTELQDVQRIMVANIEEVLQRGEALSALDSKANNLSSLSKKYRQDAKYL--- 187
+ R L ++ +V IM N+++VL+R + LS LD +A+ L + + ++ A L
Sbjct: 11 SNRRLQQTQNQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRK 70
Query: 188 ----NMHSTYAKLAAVAVFFIMLIVYV 210
N + + +F I++IV+V
Sbjct: 71 YWWKNCKMWAIGITVLVIFIIIIIVWV 97
>gi|172072620 vesicle-associated membrane protein 2 (synaptobrevin
2) [Homo sapiens]
Length = 116
Score = 37.7 bits (86), Expect = 0.007
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 7/86 (8%)
Query: 131 ARRNLGSINTELQDVQRIMVANIEEVLQRGEALSALDSKANNLSSLSKKYRQDAKYLNMH 190
+ R L ++ +V IM N+++VL+R + LS LD +A+ L + + ++ A L
Sbjct: 28 SNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRK 87
Query: 191 STYAKLAAV-------AVFFIMLIVY 209
+ L + A+ I++IVY
Sbjct: 88 YWWKNLKMMIILGVICAIILIIIIVY 113
>gi|63003894 hypothetical protein LOC154467 [Homo sapiens]
Length = 97
Score = 35.0 bits (79), Expect = 0.048
Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 12/85 (14%)
Query: 129 SCARRNLGSINTELQDVQRIMVANIEEVLQRGEALSALDSKANNLSSLSKKYRQDAKYLN 188
S RR+L ++N+ L + EA +L+ + N+L + + Y ++ K+L
Sbjct: 23 SQCRRDLEAVNSRLHSREL-----------SPEARRSLEKEKNSLMNKASNYEKELKFLR 71
Query: 189 MHSTYAKLAAVAVFFIMLIVYVRFW 213
+ L +VA+F ++ +VY +W
Sbjct: 72 QENRKNMLLSVAIFILLTLVYA-YW 95
>gi|7657673 vesicle-associated membrane protein 1 isoform 1 [Homo
sapiens]
Length = 118
Score = 35.0 bits (79), Expect = 0.048
Identities = 20/86 (23%), Positives = 43/86 (50%), Gaps = 7/86 (8%)
Query: 131 ARRNLGSINTELQDVQRIMVANIEEVLQRGEALSALDSKANNLSSLSKKYRQDAKYL--- 187
+ R L ++++V I+ N+++VL+R + LS LD +A+ L + + ++ A L
Sbjct: 30 SNRRLQQTQAQVEEVVDIIRVNVDKVLERDQKLSELDDRADALQAGASQFESSAAKLKRK 89
Query: 188 ----NMHSTYAKLAAVAVFFIMLIVY 209
N A A+ +++++Y
Sbjct: 90 YWWKNCKMMIMLGAICAIIVVVIVIY 115
>gi|40549446 vesicle-associated membrane protein 1 isoform 2 [Homo
sapiens]
Length = 117
Score = 34.7 bits (78), Expect = 0.063
Identities = 20/84 (23%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 131 ARRNLGSINTELQDVQRIMVANIEEVLQRGEALSALDSKANNLSSLSKKYRQDAKYLNMH 190
+ R L ++++V I+ N+++VL+R + LS LD +A+ L + + ++ A L
Sbjct: 30 SNRRLQQTQAQVEEVVDIIRVNVDKVLERDQKLSELDDRADALQAGASQFESSAAKLKRK 89
Query: 191 STYAK------LAAVAVFFIMLIV 208
+ L A+ +++IV
Sbjct: 90 YWWKNCKMMIMLGAICAIIVVVIV 113
>gi|9257251 vesicle-associated membrane protein 1 isoform 3 [Homo
sapiens]
Length = 116
Score = 34.7 bits (78), Expect = 0.063
Identities = 20/84 (23%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 131 ARRNLGSINTELQDVQRIMVANIEEVLQRGEALSALDSKANNLSSLSKKYRQDAKYLNMH 190
+ R L ++++V I+ N+++VL+R + LS LD +A+ L + + ++ A L
Sbjct: 30 SNRRLQQTQAQVEEVVDIIRVNVDKVLERDQKLSELDDRADALQAGASQFESSAAKLKRK 89
Query: 191 STYAK------LAAVAVFFIMLIV 208
+ L A+ +++IV
Sbjct: 90 YWWKNCKMMIMLGAICAIIVVVIV 113
>gi|4557529 post-synaptic density protein 95 isoform 1 [Homo
sapiens]
Length = 767
Score = 31.2 bits (69), Expect = 0.70
Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 10/94 (10%)
Query: 89 EDLHSEFDEQHGKKVPTVSRPYSFIEFD----TFIQKTKKLYIDSCARR--NLGSINTEL 142
+DL SEF ++ G VP +RP E D F+ +K+ D A + G N+ L
Sbjct: 592 DDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSHL 651
Query: 143 QDVQRIMVANIEEVLQRGEALSALDSKANNLSSL 176
V ++ EV ++G+ LD AN + L
Sbjct: 652 YGTS---VQSVREVAEQGKH-CILDVSANAVRRL 681
>gi|192447426 post-synaptic density protein 95 isoform 2 [Homo
sapiens]
Length = 721
Score = 31.2 bits (69), Expect = 0.70
Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 10/94 (10%)
Query: 89 EDLHSEFDEQHGKKVPTVSRPYSFIEFD----TFIQKTKKLYIDSCARR--NLGSINTEL 142
+DL SEF ++ G VP +RP E D F+ +K+ D A + G N+ L
Sbjct: 546 DDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSHL 605
Query: 143 QDVQRIMVANIEEVLQRGEALSALDSKANNLSSL 176
V ++ EV ++G+ LD AN + L
Sbjct: 606 YGTS---VQSVREVAEQGKH-CILDVSANAVRRL 635
>gi|21630257 Mdm2, transformed 3T3 cell double minute 2, p53 binding
protein binding protein [Homo sapiens]
Length = 904
Score = 30.4 bits (67), Expect = 1.2
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 139 NTELQDVQRIMVANIEEVLQRGEALSALDSKANNLSSLSKKYRQDAKYLNMHSTYAKLAA 198
+TE ++ ++ NIEE L E DS + SL+ Y + A+ N+H KL A
Sbjct: 103 DTEKDKIEDVLQTNIEECLGAVECFEEEDSNSRESLSLADLYEEAAE--NLHQLSDKLPA 160
>gi|158508572 nuclear receptor subfamily 3, group C, member 2 [Homo
sapiens]
Length = 984
Score = 29.3 bits (64), Expect = 2.6
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
Query: 81 KTLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDTFIQKTKKLYIDSCARRNLGSINT 140
K+ L+ +H E +Q + P P S E T+I K+ +++ L +I+
Sbjct: 674 KSKKLGKLKGIHEEQPQQQ-QPPPPPPPPQSPEEGTTYIAPAKEPSVNTALVPQLSTISR 732
Query: 141 ELQDVQRIMVANIE-EVLQRGEALSALDSKANNLSSLSK 178
L +++ NIE E++ G S D+ N LS+L++
Sbjct: 733 ALTPSPVMVLENIEPEIVYAGYDSSKPDTAENLLSTLNR 771
>gi|41406064 myosin, heavy polypeptide 10, non-muscle [Homo sapiens]
Length = 1976
Score = 28.9 bits (63), Expect = 3.5
Identities = 29/166 (17%), Positives = 69/166 (41%), Gaps = 11/166 (6%)
Query: 31 QQYQSQAKQLFRKLNEQSPTRCTLEAGAMTFHYIIEQGVCDL-----VLCEAAFPKTLAF 85
Q++ + ++L +L + + LE ++ C++ V E+ +
Sbjct: 1199 QRHATALEELSEQLEQAKRFKANLEKNKQGLETDNKELACEVKVLQQVKAESEHKRKKLD 1258
Query: 86 AYLEDLHSEFDEQHGKKVPTVSRPYSFI-EFD---TFIQKTKKLYIDSCARRNLGSINTE 141
A +++LH++ E +V + E D T +++ +K I ++ S+ ++
Sbjct: 1259 AQVQELHAKVSEGDRLRVELAEKASKLQNELDNVSTLLEEAEKKGIKFA--KDAASLESQ 1316
Query: 142 LQDVQRIMVANIEEVLQRGEALSALDSKANNLSSLSKKYRQDAKYL 187
LQD Q ++ + L + L+ + N+L ++ + K L
Sbjct: 1317 LQDTQELLQEETRQKLNLSSRIRQLEEEKNSLQEQQEEEEEARKNL 1362
>gi|110611228 utrophin [Homo sapiens]
Length = 3433
Score = 28.9 bits (63), Expect = 3.5
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 151 ANIEEVLQRGEALSALDSKANNLSSLSKKYRQDAKYLNMHSTYAKLAAVAV 201
A IEEVLQRGE + + N KK + + L +H+ Y K+ A+ +
Sbjct: 1807 AQIEEVLQRGEEMLHQPMEDN------KKEKIRLQLLLLHTRYNKIKAIPI 1851
>gi|41327691 kinesin-like motor protein C20orf23 [Homo sapiens]
Length = 1317
Score = 28.9 bits (63), Expect = 3.5
Identities = 48/197 (24%), Positives = 83/197 (42%), Gaps = 17/197 (8%)
Query: 16 LAASMQ-EDEQSGRDLQQYQSQAKQLFRKLNE----QSPTRCTLEAGAMTFHYIIEQGVC 70
L AS++ E E +D ++ + + +QL +K+ E Q TLE + +
Sbjct: 1049 LQASLEAEQEALEKDQERLEYEIQQLKQKIYEVDGVQKDHHGTLEGKVASSSLPVSAEKS 1108
Query: 71 DLV-LCEA---AFPKTLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDTFIQKTKKLY 126
LV L +A A+ + L+DLH E T+ + IQ+ KL
Sbjct: 1109 HLVPLMDARINAYIEEEVQRRLQDLHRVISEGCSTSADTMKDNEKL--HNGTIQR--KLK 1164
Query: 127 IDSCARRNLGSINTELQDVQRIMVANIEEVLQRGEALSALDSKANNLSSLSKKYRQDAKY 186
+ R+LG+ +L+D +I + Q +A + K L +R+ +++
Sbjct: 1165 YERMVSRSLGANPDDLKDPIKISIPRYVLCGQGKDAHFEFEVKITVLDETWTVFRRYSRF 1224
Query: 187 LNMHST----YAKLAAV 199
MH T YA+LAA+
Sbjct: 1225 REMHKTLKLKYAELAAL 1241
>gi|21735548 centrosomal protein 2 [Homo sapiens]
Length = 2442
Score = 28.5 bits (62), Expect = 4.5
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 18/78 (23%)
Query: 119 IQKTKKLYIDSCARRNLGSINTELQDVQRIMVANIEEVLQRGEALSALDSKANNLSSLSK 178
+QK ++ D+ A ++ ++TELQD+QR + N EE S + K N+L S
Sbjct: 1266 VQKLEERLTDTEAEKS--QVHTELQDLQRQLSQNQEE-------KSKWEGKQNSLES--- 1313
Query: 179 KYRQDAKYLNMHSTYAKL 196
+ + +H T A L
Sbjct: 1314 ------ELMELHETMASL 1325
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.133 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,682,297
Number of Sequences: 37866
Number of extensions: 254892
Number of successful extensions: 904
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 881
Number of HSP's gapped (non-prelim): 24
length of query: 215
length of database: 18,247,518
effective HSP length: 98
effective length of query: 117
effective length of database: 14,536,650
effective search space: 1700788050
effective search space used: 1700788050
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.