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Search of human proteins with 93277094
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|93277094 hypothetical protein LOC116151 [Homo sapiens]
(192 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|93277094 hypothetical protein LOC116151 [Homo sapiens] 377 e-105
gi|149408153 hypothetical protein LOC125228 [Homo sapiens] 64 6e-11
gi|116268105 hypothetical protein LOC125228 [Homo sapiens] 64 6e-11
gi|24432032 zinc finger protein 503 [Homo sapiens] 33 0.11
gi|239754614 PREDICTED: hypothetical protein [Homo sapiens] 31 0.57
gi|171543895 ataxin 2 [Homo sapiens] 31 0.74
gi|122937267 lemur tyrosine kinase 3 [Homo sapiens] 30 0.97
gi|239753576 PREDICTED: hypothetical protein [Homo sapiens] 30 1.3
gi|239748084 PREDICTED: hypothetical protein [Homo sapiens] 30 1.3
gi|169163728 PREDICTED: hypothetical protein [Homo sapiens] 30 1.6
gi|169163708 PREDICTED: hypothetical protein [Homo sapiens] 30 1.6
gi|169163019 PREDICTED: hypothetical protein [Homo sapiens] 30 1.6
gi|38348211 golgi transport 1 homolog A [Homo sapiens] 30 1.6
gi|120587027 ubiquitin specific peptidase 31 [Homo sapiens] 29 2.2
gi|29171705 melanoma antigen family D, 2 [Homo sapiens] 29 2.2
gi|19387846 melanoma antigen family D, 2 [Homo sapiens] 29 2.2
gi|41350320 melanoma antigen family D, 2 [Homo sapiens] 29 2.2
gi|169163335 PREDICTED: similar to hCG1742442 [Homo sapiens] 29 2.8
gi|221316624 dystonin isoform 4 [Homo sapiens] 29 2.8
gi|221316622 dystonin isoform 3 [Homo sapiens] 29 2.8
gi|221316618 dystonin isoform 2 [Homo sapiens] 29 2.8
gi|34577047 dystonin isoform 1 [Homo sapiens] 29 2.8
gi|34577049 dystonin isoform 1eA precursor [Homo sapiens] 29 2.8
gi|4502425 bone morphogenetic protein 6 preproprotein [Homo sapi... 28 3.7
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 28 3.7
gi|27734775 hypothetical protein LOC286499 [Homo sapiens] 28 3.7
gi|239755255 PREDICTED: hypothetical protein [Homo sapiens] 28 4.8
gi|239753797 PREDICTED: hypothetical protein [Homo sapiens] 28 4.8
gi|239748346 PREDICTED: hypothetical protein XP_002346641 [Homo ... 28 4.8
gi|239742245 PREDICTED: hypothetical protein XP_002342464 [Homo ... 28 4.8
>gi|93277094 hypothetical protein LOC116151 [Homo sapiens]
Length = 192
Score = 377 bits (967), Expect = e-105
Identities = 192/192 (100%), Positives = 192/192 (100%)
Query: 1 MAGLLALLGPAGRVGARVRPRATWLLGATAPCAPPPLALALLPPRLDARLLRTARGDCRG 60
MAGLLALLGPAGRVGARVRPRATWLLGATAPCAPPPLALALLPPRLDARLLRTARGDCRG
Sbjct: 1 MAGLLALLGPAGRVGARVRPRATWLLGATAPCAPPPLALALLPPRLDARLLRTARGDCRG 60
Query: 61 HQDPSQATGTTGSSVSCTEEKKQSKSQQLKKIFQEYGTVGVSLHIGISLISLGIFYMVVS 120
HQDPSQATGTTGSSVSCTEEKKQSKSQQLKKIFQEYGTVGVSLHIGISLISLGIFYMVVS
Sbjct: 61 HQDPSQATGTTGSSVSCTEEKKQSKSQQLKKIFQEYGTVGVSLHIGISLISLGIFYMVVS 120
Query: 121 SGVDMPAILLKLGFKESLVQSKMAAGTSTFVVAYAIHKLFAPVRISITLVSVPLIVRYFR 180
SGVDMPAILLKLGFKESLVQSKMAAGTSTFVVAYAIHKLFAPVRISITLVSVPLIVRYFR
Sbjct: 121 SGVDMPAILLKLGFKESLVQSKMAAGTSTFVVAYAIHKLFAPVRISITLVSVPLIVRYFR 180
Query: 181 KVGFFKPPAAKP 192
KVGFFKPPAAKP
Sbjct: 181 KVGFFKPPAAKP 192
>gi|149408153 hypothetical protein LOC125228 [Homo sapiens]
Length = 272
Score = 64.3 bits (155), Expect = 6e-11
Identities = 53/196 (27%), Positives = 89/196 (45%), Gaps = 14/196 (7%)
Query: 3 GLLALLGPAGRVGARVRPRATWLLGATAPC-APPPLALALLPPRLDARLLRTARGDCRGH 61
G L L +V P+ WL + A C A L PP+ +LR +G + H
Sbjct: 34 GPLLLYNAESKVVLVQGPQKQWLHLSAAQCVAKERRPLDAHPPQ--PGVLRHKQG--KQH 89
Query: 62 QDPSQATGTTGSSVSCTEEKK-----QSKS----QQLKKIFQEYGTVGVSLHIGISLISL 112
+ ++ ++ E+K+ Q KS Q+ KK F++YG V + +H+ S +
Sbjct: 90 VSFRRVFSSSATAQGTPEKKEEPDPLQDKSISLYQRFKKTFRQYGKVLIPVHLITSGVWF 149
Query: 113 GIFYMVVSSGVDMPAILLKLGFKESLVQSKMAAGTSTFVVAYAIHKLFAPVRISITLVSV 172
G FY GV++ L +G +S+V + + + AYA+ K+ P R ++TL
Sbjct: 150 GTFYYAALKGVNVVPFLELIGLPDSVVSILKNSQSGNALTAYALFKIATPARYTVTLGGT 209
Query: 173 PLIVRYFRKVGFFKPP 188
+ V+Y R G+ P
Sbjct: 210 SVTVKYLRSHGYMSTP 225
>gi|116268105 hypothetical protein LOC125228 [Homo sapiens]
Length = 272
Score = 64.3 bits (155), Expect = 6e-11
Identities = 53/196 (27%), Positives = 89/196 (45%), Gaps = 14/196 (7%)
Query: 3 GLLALLGPAGRVGARVRPRATWLLGATAPC-APPPLALALLPPRLDARLLRTARGDCRGH 61
G L L +V P+ WL + A C A L PP+ +LR +G + H
Sbjct: 34 GPLLLYNAESKVVLVQGPQKQWLHLSAAQCVAKERRPLDAHPPQ--PGVLRHKQG--KQH 89
Query: 62 QDPSQATGTTGSSVSCTEEKK-----QSKS----QQLKKIFQEYGTVGVSLHIGISLISL 112
+ ++ ++ E+K+ Q KS Q+ KK F++YG V + +H+ S +
Sbjct: 90 VSFRRVFSSSATAQGTPEKKEEPDPLQDKSISLYQRFKKTFRQYGKVLIPVHLITSGVWF 149
Query: 113 GIFYMVVSSGVDMPAILLKLGFKESLVQSKMAAGTSTFVVAYAIHKLFAPVRISITLVSV 172
G FY GV++ L +G +S+V + + + AYA+ K+ P R ++TL
Sbjct: 150 GTFYYAALKGVNVVPFLELIGLPDSVVSILKNSQSGNALTAYALFKIATPARYTVTLGGT 209
Query: 173 PLIVRYFRKVGFFKPP 188
+ V+Y R G+ P
Sbjct: 210 SVTVKYLRSHGYMSTP 225
>gi|24432032 zinc finger protein 503 [Homo sapiens]
Length = 646
Score = 33.5 bits (75), Expect = 0.11
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Query: 10 PAGRVGARVRPRATWLLGATAPCAPPPLALALLPPRLDARLLRTARGDCRGHQDPSQATG 69
P VGA++ A LG + P PLA A P + A L R C + S G
Sbjct: 386 PGSLVGAQLAAAAAGSLGCSKPAGSSPLAGASPPSVMTASLCRDPY--CLSYHCASHLAG 443
Query: 70 TTGSSVSCTEE 80
+S SC +
Sbjct: 444 AAAASASCAHD 454
>gi|239754614 PREDICTED: hypothetical protein [Homo sapiens]
Length = 490
Score = 31.2 bits (69), Expect = 0.57
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 8/79 (10%)
Query: 2 AGLLALLGPAGRV-GARVRPRATWLLGATAPCAPPPLAL-------ALLPPRLDARLLRT 53
AG LL A V RPRA +L A+A CAP LAL A+ P + + R
Sbjct: 47 AGAAHLLAGAWLVLSTSCRPRAPLMLNASAACAPATLALGFRVFAAAITAPEEEKKATRH 106
Query: 54 ARGDCRGHQDPSQATGTTG 72
A + + +G++G
Sbjct: 107 AESPEQARRGRDALSGSSG 125
>gi|171543895 ataxin 2 [Homo sapiens]
Length = 1313
Score = 30.8 bits (68), Expect = 0.74
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 7/89 (7%)
Query: 14 VGARVRPRATWLLGATAPCAPP-------PLALALLPPRLDARLLRTARGDCRGHQDPSQ 66
+G RP LL +P APP PL PPR L R A G R +P
Sbjct: 97 LGGPPRPFVVLLLPLASPGAPPAAPTRASPLGARASPPRSGVSLARPAPGCPRPACEPVY 156
Query: 67 ATGTTGSSVSCTEEKKQSKSQQLKKIFQE 95
T ++++Q + QQ ++ Q+
Sbjct: 157 GPLTMSLKPQQQQQQQQQQQQQQQQQQQQ 185
>gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]
Length = 1489
Score = 30.4 bits (67), Expect = 0.97
Identities = 26/96 (27%), Positives = 36/96 (37%), Gaps = 11/96 (11%)
Query: 10 PAGRVGARVRPRATWLLGATAPCAPPPLALALLPPRLDARLLRTARGDCRGHQDP----- 64
P G G+ V +A W+ PPPL PP R L A R P
Sbjct: 1152 PGGGPGSGVDAKAGWVDNTRPQPPPPPLP---PPPEAQPRRLEPAPPRARPEVAPEGEPG 1208
Query: 65 ---SQATGTTGSSVSCTEEKKQSKSQQLKKIFQEYG 97
S+A G T S K + K ++ ++F + G
Sbjct: 1209 APDSRAGGDTALSGDGDPPKPERKGPEMPRLFLDLG 1244
>gi|239753576 PREDICTED: hypothetical protein [Homo sapiens]
Length = 423
Score = 30.0 bits (66), Expect = 1.3
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 10 PAGRVGARVRPRATWLLGATAPCAPPPLALAL 41
P+GR G +A WL AT C+ PP AL L
Sbjct: 320 PSGRNGTEGSTKAGWLGTATLACSLPPHALLL 351
>gi|239748084 PREDICTED: hypothetical protein [Homo sapiens]
Length = 423
Score = 30.0 bits (66), Expect = 1.3
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 10 PAGRVGARVRPRATWLLGATAPCAPPPLALAL 41
P+GR G +A WL AT C+ PP AL L
Sbjct: 320 PSGRNGTEGSTKAGWLGTATLACSLPPHALLL 351
>gi|169163728 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 29.6 bits (65), Expect = 1.6
Identities = 26/79 (32%), Positives = 31/79 (39%), Gaps = 5/79 (6%)
Query: 10 PAGRVGARVRPRATW---LLGATAPCAPPPLALALLPPRLDARLLRTARGDCRGHQDPSQ 66
P VG R R R TW L G AP P L PPR + + AR RG
Sbjct: 36 PPSPVG-RARRRGTWLRVLRGPRAPSPAPALPARARPPRENRKRAVPARA-ARGPPKRPA 93
Query: 67 ATGTTGSSVSCTEEKKQSK 85
T G + EE+ Q +
Sbjct: 94 GGQTGGVEAASGEERSQPR 112
>gi|169163708 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 29.6 bits (65), Expect = 1.6
Identities = 26/79 (32%), Positives = 31/79 (39%), Gaps = 5/79 (6%)
Query: 10 PAGRVGARVRPRATW---LLGATAPCAPPPLALALLPPRLDARLLRTARGDCRGHQDPSQ 66
P VG R R R TW L G AP P L PPR + + AR RG
Sbjct: 36 PPSPVG-RARRRGTWLRVLRGPRAPSPAPALPARARPPRENRKRAVPARA-ARGPPKRPA 93
Query: 67 ATGTTGSSVSCTEEKKQSK 85
T G + EE+ Q +
Sbjct: 94 GGQTGGVEAASGEERSQPR 112
>gi|169163019 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 29.6 bits (65), Expect = 1.6
Identities = 26/79 (32%), Positives = 31/79 (39%), Gaps = 5/79 (6%)
Query: 10 PAGRVGARVRPRATW---LLGATAPCAPPPLALALLPPRLDARLLRTARGDCRGHQDPSQ 66
P VG R R R TW L G AP P L PPR + + AR RG
Sbjct: 36 PPSPVG-RARRRGTWLRVLRGPRAPSPAPALPARARPPRENRKRAVPARA-ARGPPKRPA 93
Query: 67 ATGTTGSSVSCTEEKKQSK 85
T G + EE+ Q +
Sbjct: 94 GGQTGGVEAASGEERSQPR 112
>gi|38348211 golgi transport 1 homolog A [Homo sapiens]
Length = 132
Score = 29.6 bits (65), Expect = 1.6
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
Query: 105 IGISLISLGIFYMVVSSGVDMPAILLKLGFKESLVQSKMAAG-TSTFVVAYAIHKL---- 159
IG+ + GIF+++ + + ++LL G L + G TF + HKL
Sbjct: 10 IGVGITGFGIFFILFGTLLYFDSVLLAFGNLLFLTGLSLIIGLRKTFWFFFQRHKLKGTS 69
Query: 160 FAPVRISITLVSVPLIVRYFRKVGFF 185
F + I L+ PL+ + GFF
Sbjct: 70 FLLGGVVIVLLRWPLLGMFLETYGFF 95
>gi|120587027 ubiquitin specific peptidase 31 [Homo sapiens]
Length = 1352
Score = 29.3 bits (64), Expect = 2.2
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 26 LGATAPCAPPPLALALLPPRLDARLLRTARGDCRGHQDPSQATGTTGSSVSCTEEKKQSK 85
L +T+P +P P+ ++L P R ++ ++RG R H P+ A SS +++ S
Sbjct: 1053 LSSTSPSSPLPVKVSLKPSRSRSKADSSSRGSGR-HSSPAPAQPKKESSPK-SQDSVSSP 1110
Query: 86 SQQLKK 91
S Q +K
Sbjct: 1111 SPQKQK 1116
>gi|29171705 melanoma antigen family D, 2 [Homo sapiens]
Length = 606
Score = 29.3 bits (64), Expect = 2.2
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 4 LLALLGPAGRVGARVRPRATWLLGATAPCAPPPLALALLPPR 45
LL+L P R G + R RA L + P APPP +ALL R
Sbjct: 242 LLSLRSPKARRG-KARRRAAKLQSSQEPEAPPPRDVALLQGR 282
>gi|19387846 melanoma antigen family D, 2 [Homo sapiens]
Length = 606
Score = 29.3 bits (64), Expect = 2.2
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 4 LLALLGPAGRVGARVRPRATWLLGATAPCAPPPLALALLPPR 45
LL+L P R G + R RA L + P APPP +ALL R
Sbjct: 242 LLSLRSPKARRG-KARRRAAKLQSSQEPEAPPPRDVALLQGR 282
>gi|41350320 melanoma antigen family D, 2 [Homo sapiens]
Length = 606
Score = 29.3 bits (64), Expect = 2.2
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 4 LLALLGPAGRVGARVRPRATWLLGATAPCAPPPLALALLPPR 45
LL+L P R G + R RA L + P APPP +ALL R
Sbjct: 242 LLSLRSPKARRG-KARRRAAKLQSSQEPEAPPPRDVALLQGR 282
>gi|169163335 PREDICTED: similar to hCG1742442 [Homo sapiens]
Length = 295
Score = 28.9 bits (63), Expect = 2.8
Identities = 15/30 (50%), Positives = 16/30 (53%)
Query: 20 PRATWLLGATAPCAPPPLALALLPPRLDAR 49
PR L A A C+P P A PPRL AR
Sbjct: 99 PRGFLLPAAAAFCSPAPAAFCRPPPRLFAR 128
>gi|221316624 dystonin isoform 4 [Homo sapiens]
Length = 5526
Score = 28.9 bits (63), Expect = 2.8
Identities = 10/24 (41%), Positives = 18/24 (75%)
Query: 76 SCTEEKKQSKSQQLKKIFQEYGTV 99
+C+EE+KQS ++L K+ + Y T+
Sbjct: 3841 ACSEEEKQSMKKKLDKVLKNYDTI 3864
>gi|221316622 dystonin isoform 3 [Homo sapiens]
Length = 5537
Score = 28.9 bits (63), Expect = 2.8
Identities = 10/24 (41%), Positives = 18/24 (75%)
Query: 76 SCTEEKKQSKSQQLKKIFQEYGTV 99
+C+EE+KQS ++L K+ + Y T+
Sbjct: 3852 ACSEEEKQSMKKKLDKVLKNYDTI 3875
>gi|221316618 dystonin isoform 2 [Homo sapiens]
Length = 5675
Score = 28.9 bits (63), Expect = 2.8
Identities = 10/24 (41%), Positives = 18/24 (75%)
Query: 76 SCTEEKKQSKSQQLKKIFQEYGTV 99
+C+EE+KQS ++L K+ + Y T+
Sbjct: 3990 ACSEEEKQSMKKKLDKVLKNYDTI 4013
>gi|34577047 dystonin isoform 1 [Homo sapiens]
Length = 5497
Score = 28.9 bits (63), Expect = 2.8
Identities = 10/24 (41%), Positives = 18/24 (75%)
Query: 76 SCTEEKKQSKSQQLKKIFQEYGTV 99
+C+EE+KQS ++L K+ + Y T+
Sbjct: 3812 ACSEEEKQSMKKKLDKVLKNYDTI 3835
>gi|34577049 dystonin isoform 1eA precursor [Homo sapiens]
Length = 5171
Score = 28.9 bits (63), Expect = 2.8
Identities = 10/24 (41%), Positives = 18/24 (75%)
Query: 76 SCTEEKKQSKSQQLKKIFQEYGTV 99
+C+EE+KQS ++L K+ + Y T+
Sbjct: 3486 ACSEEEKQSMKKKLDKVLKNYDTI 3509
>gi|4502425 bone morphogenetic protein 6 preproprotein [Homo
sapiens]
Length = 513
Score = 28.5 bits (62), Expect = 3.7
Identities = 26/92 (28%), Positives = 37/92 (40%), Gaps = 7/92 (7%)
Query: 13 RVGARVRPRATWLLGATAPCAPPPLALALLP-PRLDARLLRTA----RGDCRGHQDPSQ- 66
R G V PRA L+G P P +A + R R+A R R SQ
Sbjct: 334 RDGVHVHPRAAGLVGRDGPYDKQPFMVAFFKVSEVHVRTTRSASSRRRQQSRNRSTQSQD 393
Query: 67 -ATGTTGSSVSCTEEKKQSKSQQLKKIFQEYG 97
A ++ S + +E K + +L FQ+ G
Sbjct: 394 VARVSSASDYNSSELKTACRKHELYVSFQDLG 425
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 28.5 bits (62), Expect = 3.7
Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
Query: 3 GLLALLGPAGRVGARVRPRATWLLGATAPCAPPPLALALLPPRLDARLLRTARGDCRGHQ 62
GL GP G G + + + GAT P PP +++ PP D + +T G +
Sbjct: 806 GLPGPRGPPGPTGEKGAQGSPGVKGATGPVGPPGASVS-GPPGRDGQQGQTGLRGTPGEK 864
Query: 63 DPSQATGTTGSSVSCTEE 80
P G G SC +
Sbjct: 865 GPRGEKGEPG-ECSCPSQ 881
>gi|27734775 hypothetical protein LOC286499 [Homo sapiens]
Length = 248
Score = 28.5 bits (62), Expect = 3.7
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 49 RLLRTARGDCRGHQDPSQATGTTGSSVSCTEEKKQSKSQQLKK 91
R + + CR S + ++ SS S EEKKQ K ++ KK
Sbjct: 93 RKKKRKKKSCRSSSSSSSSDSSSSSSDSEDEEKKQGKRRKKKK 135
>gi|239755255 PREDICTED: hypothetical protein [Homo sapiens]
Length = 297
Score = 28.1 bits (61), Expect = 4.8
Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 11/108 (10%)
Query: 24 WLLGATAPCAPPPLA----LALLPPRLDARLLRTARG-DCRGHQDPSQATGTT---GSSV 75
W+LG AP P P + PP R + +RG R P+ + G G+++
Sbjct: 14 WVLGGAAPPQPQPRSPLSPWQASPPATSPRAWQLSRGPGGRSPLPPAPSRGPATCMGAAL 73
Query: 76 SCTEEKKQSKSQQLKKIFQEYGTVGVSLHIGISLISLGIFYMVVSSGV 123
E Q L + QE V V +G ++I L +++V +GV
Sbjct: 74 LLPEAHDVLGQQDLILLLQEAHLVDV---VGEAVIQLLQLHLLVGAGV 118
>gi|239753797 PREDICTED: hypothetical protein [Homo sapiens]
Length = 864
Score = 28.1 bits (61), Expect = 4.8
Identities = 27/67 (40%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
Query: 9 GPAGRVGARVRPRATWLLGATAPCAPPPLALALLPPRLDARLLRTA--RGDCRGHQDPSQ 66
G AG VG T LLG TAP P +AL P L RLL T + G Q Q
Sbjct: 765 GVAGEVGPVDH---TALLGRTAPGLPCRVAL----PPLSHRLLETGVQTLELPGRQGDRQ 817
Query: 67 ATGTTGS 73
T ++GS
Sbjct: 818 RTSSSGS 824
>gi|239748346 PREDICTED: hypothetical protein XP_002346641 [Homo
sapiens]
Length = 894
Score = 28.1 bits (61), Expect = 4.8
Identities = 27/67 (40%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
Query: 9 GPAGRVGARVRPRATWLLGATAPCAPPPLALALLPPRLDARLLRTA--RGDCRGHQDPSQ 66
G AG VG T LLG TAP P +AL P L RLL T + G Q Q
Sbjct: 795 GVAGEVGPVDH---TALLGRTAPGLPCRVAL----PPLSHRLLETGVQTLELPGRQGDRQ 847
Query: 67 ATGTTGS 73
T ++GS
Sbjct: 848 RTSSSGS 854
>gi|239742245 PREDICTED: hypothetical protein XP_002342464 [Homo
sapiens]
Length = 424
Score = 28.1 bits (61), Expect = 4.8
Identities = 27/67 (40%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
Query: 9 GPAGRVGARVRPRATWLLGATAPCAPPPLALALLPPRLDARLLRTA--RGDCRGHQDPSQ 66
G AG VG T LLG TAP P +AL P L RLL T + G Q Q
Sbjct: 325 GVAGEVGPVDH---TALLGRTAPGLPCRVAL----PPLSHRLLETGVQTLELPGRQGDRQ 377
Query: 67 ATGTTGS 73
T ++GS
Sbjct: 378 RTSSSGS 384
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.137 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,195,147
Number of Sequences: 37866
Number of extensions: 303390
Number of successful extensions: 1335
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 1317
Number of HSP's gapped (non-prelim): 51
length of query: 192
length of database: 18,247,518
effective HSP length: 97
effective length of query: 95
effective length of database: 14,574,516
effective search space: 1384579020
effective search space used: 1384579020
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.