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Search of human proteins with 93141204
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|93141204 methyltransferase like 2B [Homo sapiens]
(378 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|93141204 methyltransferase like 2B [Homo sapiens] 787 0.0
gi|165932358 methyltransferase like 2A [Homo sapiens] 775 0.0
gi|161377433 methyltransferase like 8 [Homo sapiens] 389 e-108
gi|118442825 methyltransferase like 6 [Homo sapiens] 180 2e-45
gi|89145417 methyltransferase like 7A [Homo sapiens] 46 5e-05
gi|164663805 methyltransferase like 7B [Homo sapiens] 39 0.008
gi|118600965 hexaprenyldihydroxybenzoate methyltransferase [Homo... 37 0.038
gi|195927056 alkB, alkylation repair homolog 8 [Homo sapiens] 34 0.19
gi|4505921 phenylethanolamine N-methyltransferase [Homo sapiens] 33 0.32
gi|5453790 nicotinamide N-methyltransferase [Homo sapiens] 33 0.42
gi|30795190 Williams-Beuren syndrome chromosome region 27 [Homo ... 30 2.7
gi|21396487 hypothetical protein LOC55471 isoform 1 [Homo sapiens] 30 2.7
gi|23503243 Ras association (RalGDS/AF-6) domain family (N-termi... 30 3.6
gi|7705409 HemK methyltransferase family member 1 [Homo sapiens] 30 4.7
gi|24497609 nucleoporin 62kDa [Homo sapiens] 29 6.1
gi|24497607 nucleoporin 62kDa [Homo sapiens] 29 6.1
gi|24497605 nucleoporin 62kDa [Homo sapiens] 29 6.1
gi|24497603 nucleoporin 62kDa [Homo sapiens] 29 6.1
gi|56676399 methyltransferase like 11A [Homo sapiens] 29 6.1
gi|190014581 leucine rich repeat containing 2 [Homo sapiens] 29 6.1
gi|27545328 leucine rich repeat containing 2 [Homo sapiens] 29 6.1
gi|56549645 nucleoporin 98kD isoform 4 [Homo sapiens] 29 8.0
gi|56549643 nucleoporin 98kD isoform 3 [Homo sapiens] 29 8.0
gi|21264365 nucleoporin 98kD isoform 1 [Homo sapiens] 29 8.0
gi|21264369 nucleoporin 98kD isoform 2 [Homo sapiens] 29 8.0
>gi|93141204 methyltransferase like 2B [Homo sapiens]
Length = 378
Score = 787 bits (2033), Expect = 0.0
Identities = 378/378 (100%), Positives = 378/378 (100%)
Query: 1 MAGSYPEGAPAILADKRQQFGSRFLSDPARVFHHNAWDNVEWSEEQAAAAERKVQENSIQ 60
MAGSYPEGAPAILADKRQQFGSRFLSDPARVFHHNAWDNVEWSEEQAAAAERKVQENSIQ
Sbjct: 1 MAGSYPEGAPAILADKRQQFGSRFLSDPARVFHHNAWDNVEWSEEQAAAAERKVQENSIQ 60
Query: 61 RVCQEKQVDYEINAHKYWNDFYKIHENGFFKDRHWLFTEFPELAPSQNQNHLKDWFLENK 120
RVCQEKQVDYEINAHKYWNDFYKIHENGFFKDRHWLFTEFPELAPSQNQNHLKDWFLENK
Sbjct: 61 RVCQEKQVDYEINAHKYWNDFYKIHENGFFKDRHWLFTEFPELAPSQNQNHLKDWFLENK 120
Query: 121 SEVCECRNNEDGPGLIMEEQHKCSSKSLEHKTQTPPVEENVTQKISDLEICADEFPGSSA 180
SEVCECRNNEDGPGLIMEEQHKCSSKSLEHKTQTPPVEENVTQKISDLEICADEFPGSSA
Sbjct: 121 SEVCECRNNEDGPGLIMEEQHKCSSKSLEHKTQTPPVEENVTQKISDLEICADEFPGSSA 180
Query: 181 TYRILEVGCGVGNTVFPILQTNNDPGLFVYCCDFSSTAIELVQTNSEYDPSRCFAFVHDL 240
TYRILEVGCGVGNTVFPILQTNNDPGLFVYCCDFSSTAIELVQTNSEYDPSRCFAFVHDL
Sbjct: 181 TYRILEVGCGVGNTVFPILQTNNDPGLFVYCCDFSSTAIELVQTNSEYDPSRCFAFVHDL 240
Query: 241 CDEEKSYPVPKGSLDIIILIFVLSAVVPDKMQKAINRLSRLLKPGGMVLLRDYGRYDMAQ 300
CDEEKSYPVPKGSLDIIILIFVLSAVVPDKMQKAINRLSRLLKPGGMVLLRDYGRYDMAQ
Sbjct: 241 CDEEKSYPVPKGSLDIIILIFVLSAVVPDKMQKAINRLSRLLKPGGMVLLRDYGRYDMAQ 300
Query: 301 LRFKKGQCLSGNFYVRGDGTRVYFFTQEELDTLFTTAGLEKVQNLVDRRLQVNRGKQLTM 360
LRFKKGQCLSGNFYVRGDGTRVYFFTQEELDTLFTTAGLEKVQNLVDRRLQVNRGKQLTM
Sbjct: 301 LRFKKGQCLSGNFYVRGDGTRVYFFTQEELDTLFTTAGLEKVQNLVDRRLQVNRGKQLTM 360
Query: 361 YRVWIQCKYCKPLLSSTS 378
YRVWIQCKYCKPLLSSTS
Sbjct: 361 YRVWIQCKYCKPLLSSTS 378
>gi|165932358 methyltransferase like 2A [Homo sapiens]
Length = 378
Score = 775 bits (2001), Expect = 0.0
Identities = 372/378 (98%), Positives = 375/378 (99%)
Query: 1 MAGSYPEGAPAILADKRQQFGSRFLSDPARVFHHNAWDNVEWSEEQAAAAERKVQENSIQ 60
MAGSYPEGAPA+LADKRQQFGSRFL DPARVFHHNAWDNVEWSEEQAAAAERKVQENSIQ
Sbjct: 1 MAGSYPEGAPAVLADKRQQFGSRFLRDPARVFHHNAWDNVEWSEEQAAAAERKVQENSIQ 60
Query: 61 RVCQEKQVDYEINAHKYWNDFYKIHENGFFKDRHWLFTEFPELAPSQNQNHLKDWFLENK 120
RVCQEKQVDYEINAHKYWNDFYKIHENGFFKDRHWLFTEFPELAPSQNQNHLKDWFLENK
Sbjct: 61 RVCQEKQVDYEINAHKYWNDFYKIHENGFFKDRHWLFTEFPELAPSQNQNHLKDWFLENK 120
Query: 121 SEVCECRNNEDGPGLIMEEQHKCSSKSLEHKTQTPPVEENVTQKISDLEICADEFPGSSA 180
SEV ECRNNEDGPGLIMEEQHKCSSKSLEHKTQT PVEENVTQKISDLEICADEFPGSSA
Sbjct: 121 SEVPECRNNEDGPGLIMEEQHKCSSKSLEHKTQTLPVEENVTQKISDLEICADEFPGSSA 180
Query: 181 TYRILEVGCGVGNTVFPILQTNNDPGLFVYCCDFSSTAIELVQTNSEYDPSRCFAFVHDL 240
TYRILEVGCGVGNTVFPILQTNNDPGLFVYCCDFSSTAIELVQTNSEYDPSRCFAFVHDL
Sbjct: 181 TYRILEVGCGVGNTVFPILQTNNDPGLFVYCCDFSSTAIELVQTNSEYDPSRCFAFVHDL 240
Query: 241 CDEEKSYPVPKGSLDIIILIFVLSAVVPDKMQKAINRLSRLLKPGGMVLLRDYGRYDMAQ 300
CDEEKSYPVPKGSLDIIILIFVLSA+VPDKMQKAINRLSRLLKPGGM+LLRDYGRYDMAQ
Sbjct: 241 CDEEKSYPVPKGSLDIIILIFVLSAIVPDKMQKAINRLSRLLKPGGMMLLRDYGRYDMAQ 300
Query: 301 LRFKKGQCLSGNFYVRGDGTRVYFFTQEELDTLFTTAGLEKVQNLVDRRLQVNRGKQLTM 360
LRFKKGQCLSGNFYVRGDGTRVYFFTQEELDTLFTTAGLEKVQNLVDRRLQVNRGKQLTM
Sbjct: 301 LRFKKGQCLSGNFYVRGDGTRVYFFTQEELDTLFTTAGLEKVQNLVDRRLQVNRGKQLTM 360
Query: 361 YRVWIQCKYCKPLLSSTS 378
YRVWIQCKYCKPLLSSTS
Sbjct: 361 YRVWIQCKYCKPLLSSTS 378
>gi|161377433 methyltransferase like 8 [Homo sapiens]
Length = 407
Score = 389 bits (999), Expect = e-108
Identities = 199/360 (55%), Positives = 257/360 (71%), Gaps = 8/360 (2%)
Query: 21 GSRFLSDPARVFHHNAWDNVEWSEEQAAAAERKVQENSIQRVCQEKQVDYEINAHKYWND 80
GSR L+DPA+VF HN WD+++WS+E+ AAA +KV+ENS RV E+QV YE A KYW+
Sbjct: 32 GSRILTDPAKVFEHNMWDHMQWSKEEEAAARKKVKENSAVRVLLEEQVKYEREASKYWDT 91
Query: 81 FYKIHENGFFKDRHWLFTEFPELAPSQNQNHLK----DWFLENKSEVCECRNNEDGPGLI 136
FYKIH+N FFKDR+WL EFPE+ P + K W K+ + P +
Sbjct: 92 FYKIHKNKFFKDRNWLLREFPEILPVDQKPEEKARESSWD-HVKTSATNRFSRMHCPTVP 150
Query: 137 MEEQH-KCSSKSLEHKTQTPPVEENV-TQKISDLEICADEFPGSSATYRILEVGCGVGNT 194
E+ H + SS S E +++T N+ ++K + FPGS+AT+RILEVGCG GN+
Sbjct: 151 DEKNHYEKSSGSSEGQSKTESDFSNLDSEKHKKGPMETGLFPGSNATFRILEVGCGAGNS 210
Query: 195 VFPILQT-NNDPGLFVYCCDFSSTAIELVQTNSEYDPSRCFAFVHDLCDEEKSYPVPKGS 253
VFPIL T N P F+YCCDF+S A+ELV+++S Y ++CFAFVHD+CD+ YP P G
Sbjct: 211 VFPILNTLENSPESFLYCCDFASGAVELVKSHSSYRATQCFAFVHDVCDDGLPYPFPDGI 270
Query: 254 LDIIILIFVLSAVVPDKMQKAINRLSRLLKPGGMVLLRDYGRYDMAQLRFKKGQCLSGNF 313
LD+I+L+FVLS++ PD+MQ +NRLS+LLKPGGM+L RDYGRYD QLRFKKG CLS NF
Sbjct: 271 LDVILLVFVLSSIHPDRMQGVVNRLSKLLKPGGMLLFRDYGRYDKTQLRFKKGHCLSENF 330
Query: 314 YVRGDGTRVYFFTQEELDTLFTTAGLEKVQNLVDRRLQVNRGKQLTMYRVWIQCKYCKPL 373
YVRGDGTR YFFT+ E+ ++F A L++ QNLVDRRLQVNR KQ+ M+RVWIQ K+ KPL
Sbjct: 331 YVRGDGTRAYFFTKGEVHSMFCKASLDEKQNLVDRRLQVNRKKQVKMHRVWIQGKFQKPL 390
>gi|118442825 methyltransferase like 6 [Homo sapiens]
Length = 284
Score = 180 bits (456), Expect = 2e-45
Identities = 101/211 (47%), Positives = 128/211 (60%), Gaps = 5/211 (2%)
Query: 162 TQKISDLEICADEFPGSSATYRILEVGCGVGNTVFPILQTNNDPGLFVYCCDFSSTAIEL 221
T++ +L C EF T +LE GCGVGN +FP+L+ DP +F Y CDFS AIE
Sbjct: 64 TREFEELRSCR-EFEDQKLT--MLEAGCGVGNCLFPLLE--EDPNIFAYACDFSPRAIEY 118
Query: 222 VQTNSEYDPSRCFAFVHDLCDEEKSYPVPKGSLDIIILIFVLSAVVPDKMQKAINRLSRL 281
V+ N YD RC F DL ++ VP S+D+++LIFVLSAV PDKM + + ++
Sbjct: 119 VKQNPLYDTERCKVFQCDLTKDDLLDHVPPESVDVVMLIFVLSAVHPDKMHLVLQNIYKV 178
Query: 282 LKPGGMVLLRDYGRYDMAQLRFKKGQCLSGNFYVRGDGTRVYFFTQEELDTLFTTAGLEK 341
LKPG VL RDYG YD A LRFK L NFYVR DGTR YFFT + L LF G E+
Sbjct: 179 LKPGKSVLFRDYGLYDHAMLRFKASSKLGENFYVRQDGTRSYFFTDDFLAQLFMDTGYEE 238
Query: 342 VQNLVDRRLQVNRGKQLTMYRVWIQCKYCKP 372
V N R VN+ + L + RV++Q K+ KP
Sbjct: 239 VVNEYVFRETVNKKEGLCVPRVFLQSKFLKP 269
Score = 45.1 bits (105), Expect = 1e-04
Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 7/94 (7%)
Query: 66 KQVDYEINAHKYWNDFYKIHENGFFKDRHWLFTEFPELAPSQNQNHLKDWFLENKSEVCE 125
KQ E A K W+ FYK + FFKDRHW EF EL + K LE V
Sbjct: 33 KQQKLEQEAQKNWDLFYKRNSTNFFKDRHWTTREFEELRSCREFEDQKLTMLEAGCGVGN 92
Query: 126 CRNN--EDGPGLIMEEQHKC--SSKSLEHKTQTP 155
C E+ P + + C S +++E+ Q P
Sbjct: 93 CLFPLLEEDPNIF---AYACDFSPRAIEYVKQNP 123
>gi|89145417 methyltransferase like 7A [Homo sapiens]
Length = 244
Score = 46.2 bits (108), Expect = 5e-05
Identities = 44/166 (26%), Positives = 70/166 (42%), Gaps = 18/166 (10%)
Query: 159 ENVTQKISDLEICADEFPGSSATYRILEVGCGVG-NTVFPILQTNNDPGLFVYCCD---- 213
E + K +L EF G S +LEVGCG G N F PG V C D
Sbjct: 49 EQMASKKRELFSNLQEFAGPSGKLSLLEVGCGTGANFKF------YPPGCRVTCIDPNPN 102
Query: 214 FSSTAIELVQTNSEYDPSRCFAFVHDLCDEEKSYPVPKGSLDIIILIFVLSAVVPDKMQK 273
F I+ + N R FV + E + V GS+D+++ VL +V ++
Sbjct: 103 FEKFLIKSIAENRHLQFER---FV--VAAGENMHQVADGSVDVVVCTLVLCSV--KNQER 155
Query: 274 AINRLSRLLKPGGMVLLRDYGRYDMAQLRFKKGQCLSGNFYVRGDG 319
+ + R+L+PGG ++ + + + Q L +++ DG
Sbjct: 156 ILREVCRVLRPGGAFYFMEHVAAECSTWNYFWQQVLDPAWHLLFDG 201
>gi|164663805 methyltransferase like 7B [Homo sapiens]
Length = 244
Score = 38.9 bits (89), Expect = 0.008
Identities = 44/183 (24%), Positives = 72/183 (39%), Gaps = 18/183 (9%)
Query: 154 TPPVEENVTQKISDLEICADEFPGSSATYRILEVGCGVG-NTVFPILQTNNDPGLFVYCC 212
TP + K +L G+S +LE+GCG G N F PG V C
Sbjct: 44 TPKSNRKMESKKRELFSQIKGLTGASGKVALLELGCGTGANFQF------YPPGCRVTCL 97
Query: 213 D----FSSTAIELVQTNSEYDPSRCFAFVHDLCDEEKSYPVPKGSLDIIILIFVLSAVVP 268
D F + + N R FV + E + GS+D+++ VL +V
Sbjct: 98 DPNPHFEKFLTKSMAENRHLQYER---FV--VAPGEDMRQLADGSMDVVVCTLVLCSV-- 150
Query: 269 DKMQKAINRLSRLLKPGGMVLLRDYGRYDMAQLRFKKGQCLSGNFYVRGDGTRVYFFTQE 328
+K + + R+L+PGG++ ++ F Q + GDG + T +
Sbjct: 151 QSPRKVLQEVRRVLRPGGVLFFWEHVAEPYGSWAFMWQQVFEPTWKHIGDGCCLTRETWK 210
Query: 329 ELD 331
+L+
Sbjct: 211 DLE 213
>gi|118600965 hexaprenyldihydroxybenzoate methyltransferase [Homo
sapiens]
Length = 369
Score = 36.6 bits (83), Expect = 0.038
Identities = 39/167 (23%), Positives = 71/167 (42%), Gaps = 13/167 (7%)
Query: 183 RILEVGCGVGNTVFPILQTNNDPGLFVYCCDFSSTAIELVQTNSEYDPSRCFAFVHDLCD 242
+IL+VGCG G P+ + G V D I+ Q + +DP + +C
Sbjct: 149 KILDVGCGGGLLTEPLGRL----GASVIGIDPVDENIKTAQCHKSFDPVLDKRIEYRVCS 204
Query: 243 EEKSYPVPKGSLDIIILIFVLSAVVPDKMQKAINRLSRLLKPGGMVLLRDYGRYDMAQLR 302
E+ + D ++ V+ V+ ++ + ++LKPGG + + + QL
Sbjct: 205 LEEIVEETAETFDAVVASEVVEHVI--DLETFLQCCCQVLKPGGSLFITTINK---TQLS 259
Query: 303 FKKGQCLS---GNFYVRGDGTRVYFFTQEELDTLFTTAGLEKVQNLV 346
+ G S + +G T F + E L+++ + GL VQ +V
Sbjct: 260 YALGIVFSEQIASIVPKGTHTWEKFVSPETLESILESNGL-SVQTVV 305
>gi|195927056 alkB, alkylation repair homolog 8 [Homo sapiens]
Length = 664
Score = 34.3 bits (77), Expect = 0.19
Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 17/108 (15%)
Query: 184 ILEVGCGVGNTVFPILQTNNDPGLFVYCCDFSSTAIELVQTNSEYDPSRCFAFVHDLCDE 243
+ ++GCG G L N + L++ CD S +++ + F +CD
Sbjct: 410 VADIGCGNGK----YLGINKE--LYMIGCDRSQNLVDICRERQ---------FQAFVCDA 454
Query: 244 EKSYPVPKGSLDIIILIFVLSA-VVPDKMQKAINRLSRLLKPGGMVLL 290
+ PV GS D I I V+ ++ A+ + RLL+PGG L+
Sbjct: 455 -LAVPVRSGSCDACISIAVIHHFATAERRVAALQEIVRLLRPGGKALI 501
>gi|4505921 phenylethanolamine N-methyltransferase [Homo sapiens]
Length = 282
Score = 33.5 bits (75), Expect = 0.32
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 7/56 (12%)
Query: 242 DEEKSYPVPKGS-----LDIIILIFVLSAVVPD--KMQKAINRLSRLLKPGGMVLL 290
D + P+ GS D ++ F L AV PD Q+A++ ++ LL+PGG +LL
Sbjct: 158 DVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLL 213
>gi|5453790 nicotinamide N-methyltransferase [Homo sapiens]
Length = 264
Score = 33.1 bits (74), Expect = 0.42
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 241 CDEEKSYP---VPKGSLDIIILIFVLSAVVPDKMQ--KAINRLSRLLKPGGMVLLRD 292
CD +S P VP D ++ L A PD +A+ L LLKPGG +++ D
Sbjct: 141 CDVTQSQPLGAVPLPPADCVLSTLCLDAACPDLPTYCRALRNLGSLLKPGGFLVIMD 197
>gi|30795190 Williams-Beuren syndrome chromosome region 27 [Homo
sapiens]
Length = 245
Score = 30.4 bits (67), Expect = 2.7
Identities = 38/133 (28%), Positives = 59/133 (44%), Gaps = 20/133 (15%)
Query: 176 PGSSATYRILEVGCGVGNTVFPILQTNNDPG-LFVYCCDFSSTAIELVQTNSEYDPSRCF 234
PG + IL+V CG G + PG L ++ D S +E Q Y
Sbjct: 63 PGPPHSALILDVACGTGLVAAEL----RAPGFLQLHGVDGSPGMLEQAQAPGLYQRL--- 115
Query: 235 AFVHDLCD-EEKSYPVPKGSLDIIILIFVLS-AVVPDKMQKAINRLSRLLKPGGMVLLRD 292
LC ++ P P+G+ D ++++ LS VP AI L + KPGG+V L
Sbjct: 116 ----SLCTLGQEPLPSPEGTFDAVLIVGALSDGQVP---CNAIPEL-HVTKPGGLVCLTT 167
Query: 293 YGRYDMAQLRFKK 305
R + + L++K+
Sbjct: 168 --RTNSSNLQYKE 178
>gi|21396487 hypothetical protein LOC55471 isoform 1 [Homo sapiens]
Length = 441
Score = 30.4 bits (67), Expect = 2.7
Identities = 17/51 (33%), Positives = 26/51 (50%)
Query: 177 GSSATYRILEVGCGVGNTVFPILQTNNDPGLFVYCCDFSSTAIELVQTNSE 227
G S ++++E+G G G V IL+ G + CD S +E+ Q SE
Sbjct: 113 GKSTAFQLVELGPGRGTLVGDILRVFTQLGSVLKNCDISVHLVEVSQKLSE 163
>gi|23503243 Ras association (RalGDS/AF-6) domain family
(N-terminal) member 8 [Homo sapiens]
Length = 392
Score = 30.0 bits (66), Expect = 3.6
Identities = 28/128 (21%), Positives = 50/128 (39%), Gaps = 33/128 (25%)
Query: 44 EEQAAAAERKVQENSIQRVCQEKQVDYEINAHKYWNDFYKIHENGFFKDRHWLFTEFPEL 103
EE+ E+K++ N D EI ++W + +I +
Sbjct: 203 EEEIVRLEQKIKRN-----------DVEIEEEEFWENELQIEQ----------------- 234
Query: 104 APSQNQNHLKDWFLENKSEVCECRNN-EDGPGLIMEEQHKCSSKSLEHKTQTPPV-EENV 161
+N+ LKD E + ++ EC N +D I + ++ L+ + Q V EE V
Sbjct: 235 ---ENEKQLKDQLQEIRQKITECENKLKDYLAQIRTMESGLEAEKLQREVQEAQVNEEEV 291
Query: 162 TQKISDLE 169
KI ++
Sbjct: 292 KGKIGKVK 299
>gi|7705409 HemK methyltransferase family member 1 [Homo sapiens]
Length = 338
Score = 29.6 bits (65), Expect = 4.7
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
Query: 177 GSSATYRILEVGCGVGNTVFPILQTNNDPGLFVYCCDFSSTAIELVQTNSE--YDPSRCF 234
GS + ILEVGCG G +L + P V D AI L N++ R +
Sbjct: 156 GSPGSPLILEVGCGSGAISLSLL--SQLPQSRVIAVDKREAAISLTHENAQRLRLQDRIW 213
Query: 235 AFVHDLCDEEKSYPVPKGSLDIII 258
D+ E +P G +D+I+
Sbjct: 214 IIHLDMTSERSWTHLPWGPMDLIV 237
>gi|24497609 nucleoporin 62kDa [Homo sapiens]
Length = 522
Score = 29.3 bits (64), Expect = 6.1
Identities = 17/64 (26%), Positives = 36/64 (56%), Gaps = 11/64 (17%)
Query: 8 GAPAILADKRQQFGSRFLSDPARVFHHNAWDNVEWSEEQAAAAERKVQENSIQRVCQEKQ 67
GAPA +D QQ ++ + + D+++W ++ +A +RKV+E + +VC+ ++
Sbjct: 462 GAPADTSDPLQQI--------CKILNAHM-DSLQWIDQNSALLQRKVEE--VTKVCEGRR 510
Query: 68 VDYE 71
+ E
Sbjct: 511 KEQE 514
>gi|24497607 nucleoporin 62kDa [Homo sapiens]
Length = 522
Score = 29.3 bits (64), Expect = 6.1
Identities = 17/64 (26%), Positives = 36/64 (56%), Gaps = 11/64 (17%)
Query: 8 GAPAILADKRQQFGSRFLSDPARVFHHNAWDNVEWSEEQAAAAERKVQENSIQRVCQEKQ 67
GAPA +D QQ ++ + + D+++W ++ +A +RKV+E + +VC+ ++
Sbjct: 462 GAPADTSDPLQQI--------CKILNAHM-DSLQWIDQNSALLQRKVEE--VTKVCEGRR 510
Query: 68 VDYE 71
+ E
Sbjct: 511 KEQE 514
>gi|24497605 nucleoporin 62kDa [Homo sapiens]
Length = 522
Score = 29.3 bits (64), Expect = 6.1
Identities = 17/64 (26%), Positives = 36/64 (56%), Gaps = 11/64 (17%)
Query: 8 GAPAILADKRQQFGSRFLSDPARVFHHNAWDNVEWSEEQAAAAERKVQENSIQRVCQEKQ 67
GAPA +D QQ ++ + + D+++W ++ +A +RKV+E + +VC+ ++
Sbjct: 462 GAPADTSDPLQQI--------CKILNAHM-DSLQWIDQNSALLQRKVEE--VTKVCEGRR 510
Query: 68 VDYE 71
+ E
Sbjct: 511 KEQE 514
>gi|24497603 nucleoporin 62kDa [Homo sapiens]
Length = 522
Score = 29.3 bits (64), Expect = 6.1
Identities = 17/64 (26%), Positives = 36/64 (56%), Gaps = 11/64 (17%)
Query: 8 GAPAILADKRQQFGSRFLSDPARVFHHNAWDNVEWSEEQAAAAERKVQENSIQRVCQEKQ 67
GAPA +D QQ ++ + + D+++W ++ +A +RKV+E + +VC+ ++
Sbjct: 462 GAPADTSDPLQQI--------CKILNAHM-DSLQWIDQNSALLQRKVEE--VTKVCEGRR 510
Query: 68 VDYE 71
+ E
Sbjct: 511 KEQE 514
>gi|56676399 methyltransferase like 11A [Homo sapiens]
Length = 223
Score = 29.3 bits (64), Expect = 6.1
Identities = 35/169 (20%), Positives = 68/169 (40%), Gaps = 18/169 (10%)
Query: 136 IMEEQHKCSSKSLEHKTQTPPVEENVTQ---KISDLEICAD---------EFPGSSATYR 183
++E++ + SK+ + Q PP + + IS ++I + E P + T
Sbjct: 5 VIEDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNKTGTSC 64
Query: 184 ILEVGCGVGNTVFPILQTNNDPGLFVYCCDFSSTAIELVQTNSEYDPSRCFAFVHDLCDE 243
L+ G G+G +L LF T LVQ + + C
Sbjct: 65 ALDCGAGIGRITKRLLLP-----LFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGL 119
Query: 244 EKSYPVPKGSLDIIILIFVLSAVVPDKMQKAINRLSRLLKPGGMVLLRD 292
+ P P S D+I + +V+ + + + + R L+P G+++++D
Sbjct: 120 QDFTPEPD-SYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKD 167
>gi|190014581 leucine rich repeat containing 2 [Homo sapiens]
Length = 371
Score = 29.3 bits (64), Expect = 6.1
Identities = 28/115 (24%), Positives = 43/115 (37%), Gaps = 29/115 (25%)
Query: 30 RVFHHNAWDNVEWSEEQAAAAERKVQENSIQRVCQEKQVDYEINAHKYWND-----FYKI 84
RV H AW E + +A E+ +E + C+ K + + + D KI
Sbjct: 20 RVKKHKAWQKKEVERLEKSALEKIKEEWNFVAECRRKGIPQAVYCKNGFIDTSVRLLDKI 79
Query: 85 HEN------GFFKDR--------------HWLFTEFPELAPSQNQNHLKDWFLEN 119
N KDR HW TE P+ + Q HL++W++ N
Sbjct: 80 ERNTLTRQSSLPKDRGKRSSAFVFELSGEHW--TELPD--SLKEQTHLREWYISN 130
>gi|27545328 leucine rich repeat containing 2 [Homo sapiens]
Length = 371
Score = 29.3 bits (64), Expect = 6.1
Identities = 28/115 (24%), Positives = 43/115 (37%), Gaps = 29/115 (25%)
Query: 30 RVFHHNAWDNVEWSEEQAAAAERKVQENSIQRVCQEKQVDYEINAHKYWND-----FYKI 84
RV H AW E + +A E+ +E + C+ K + + + D KI
Sbjct: 20 RVKKHKAWQKKEVERLEKSALEKIKEEWNFVAECRRKGIPQAVYCKNGFIDTSVRLLDKI 79
Query: 85 HEN------GFFKDR--------------HWLFTEFPELAPSQNQNHLKDWFLEN 119
N KDR HW TE P+ + Q HL++W++ N
Sbjct: 80 ERNTLTRQSSLPKDRGKRSSAFVFELSGEHW--TELPD--SLKEQTHLREWYISN 130
>gi|56549645 nucleoporin 98kD isoform 4 [Homo sapiens]
Length = 1726
Score = 28.9 bits (63), Expect = 8.0
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 20/123 (16%)
Query: 272 QKAINRLSRLLKPGGMVLLRDYGRY------DMAQLRFKKGQCLSGNFYV--RGDGTRVY 323
++ I S + P G++L + G Y D+A++ +KG+C+ +F + +G G+ +Y
Sbjct: 702 REEIENNSYHMHPAGIILTK-VGYYTIPSMDDLAKITNEKGECIVSDFTIGRKGYGS-IY 759
Query: 324 F-----FTQEELDTLFTTAGLEKVQNLVDRRLQ-----VNRGKQLTMYRVWIQCKYCKPL 373
F T LD + E V L D + +NR ++T+ VW K + L
Sbjct: 760 FEGDVNLTNLNLDDIVHIRRKEVVVYLDDNQKPPVGEGLNRKAEVTLDGVWPTDKTSRCL 819
Query: 374 LSS 376
+ S
Sbjct: 820 IKS 822
>gi|56549643 nucleoporin 98kD isoform 3 [Homo sapiens]
Length = 937
Score = 28.9 bits (63), Expect = 8.0
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 20/123 (16%)
Query: 272 QKAINRLSRLLKPGGMVLLRDYGRY------DMAQLRFKKGQCLSGNFYV--RGDGTRVY 323
++ I S + P G++L + G Y D+A++ +KG+C+ +F + +G G+ +Y
Sbjct: 719 REEIENNSYHMHPAGIILTK-VGYYTIPSMDDLAKITNEKGECIVSDFTIGRKGYGS-IY 776
Query: 324 F-----FTQEELDTLFTTAGLEKVQNLVDRRLQ-----VNRGKQLTMYRVWIQCKYCKPL 373
F T LD + E V L D + +NR ++T+ VW K + L
Sbjct: 777 FEGDVNLTNLNLDDIVHIRRKEVVVYLDDNQKPPVGEGLNRKAEVTLDGVWPTDKTSRCL 836
Query: 374 LSS 376
+ S
Sbjct: 837 IKS 839
>gi|21264365 nucleoporin 98kD isoform 1 [Homo sapiens]
Length = 1800
Score = 28.9 bits (63), Expect = 8.0
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 20/123 (16%)
Query: 272 QKAINRLSRLLKPGGMVLLRDYGRY------DMAQLRFKKGQCLSGNFYV--RGDGTRVY 323
++ I S + P G++L + G Y D+A++ +KG+C+ +F + +G G+ +Y
Sbjct: 702 REEIENNSYHMHPAGIILTK-VGYYTIPSMDDLAKITNEKGECIVSDFTIGRKGYGS-IY 759
Query: 324 F-----FTQEELDTLFTTAGLEKVQNLVDRRLQ-----VNRGKQLTMYRVWIQCKYCKPL 373
F T LD + E V L D + +NR ++T+ VW K + L
Sbjct: 760 FEGDVNLTNLNLDDIVHIRRKEVVVYLDDNQKPPVGEGLNRKAEVTLDGVWPTDKTSRCL 819
Query: 374 LSS 376
+ S
Sbjct: 820 IKS 822
>gi|21264369 nucleoporin 98kD isoform 2 [Homo sapiens]
Length = 920
Score = 28.9 bits (63), Expect = 8.0
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 20/123 (16%)
Query: 272 QKAINRLSRLLKPGGMVLLRDYGRY------DMAQLRFKKGQCLSGNFYV--RGDGTRVY 323
++ I S + P G++L + G Y D+A++ +KG+C+ +F + +G G+ +Y
Sbjct: 702 REEIENNSYHMHPAGIILTK-VGYYTIPSMDDLAKITNEKGECIVSDFTIGRKGYGS-IY 759
Query: 324 F-----FTQEELDTLFTTAGLEKVQNLVDRRLQ-----VNRGKQLTMYRVWIQCKYCKPL 373
F T LD + E V L D + +NR ++T+ VW K + L
Sbjct: 760 FEGDVNLTNLNLDDIVHIRRKEVVVYLDDNQKPPVGEGLNRKAEVTLDGVWPTDKTSRCL 819
Query: 374 LSS 376
+ S
Sbjct: 820 IKS 822
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.136 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,627,923
Number of Sequences: 37866
Number of extensions: 705616
Number of successful extensions: 1579
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1566
Number of HSP's gapped (non-prelim): 26
length of query: 378
length of database: 18,247,518
effective HSP length: 104
effective length of query: 274
effective length of database: 14,309,454
effective search space: 3920790396
effective search space used: 3920790396
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.