Guide to the Human Genome
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Name: WBSCR27 Sequence: fasta or formatted (245aa) NCBI GI: 30795190
Description:

Williams-Beuren syndrome chromosome region 27

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.4         28           2
 C cysteine            2.4          6           1
 D aspartate           4.9         12           1
 E glutamate           5.3         13           2
 F phenylalanine       1.2          3           1
 G glycine             8.6         21           2
 H histidine           2.0          5           1
 I isoleucine          1.6          4           1
 K lysine              1.6          4           1
 L leucine            14.3         35           2
 M methionine          1.6          4           1
 N asparagine          1.2          3           1
 P proline             9.4         23           2
 Q glutamine           4.9         12           1
 R arginine            6.9         17           2
 S serine              6.1         15           2
 T threonine           5.3         13           2
 V valine              5.7         14           1
 W tryptophan          2.9          7           1
 Y tyrosine            2.4          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Williams-Beuren syndrome chromosome region 27 
WBSCR22               0.035   Williams Beuren syndrome chromosome region 22 protei...
GNMT                  0.023   glycine N-methyltransferase 
COQ3                  0.019   hexaprenyldihydroxybenzoate methyltransferase [Homo...
SH3RF3                0.014   SH3 domain containing ring finger 3 
METTL10               0.014   methyltransferase like 10 
METTL8                0.014   methyltransferase like 8 
ZBTB17                0.012   zinc finger and BTB domain containing 17 
WDR7                  0.012   rabconnectin-3 beta isoform 1 
METTL2B               0.010   methyltransferase like 2B 
PDXP                  0.010   pyridoxal phosphatase 
ABCA2                 0.010   ATP-binding cassette, sub-family A, member 2 isoform...
ABCA2                 0.010   ATP-binding cassette, sub-family A, member 2 isoform...
LOC100129566          0.008   PREDICTED: hypothetical protein LOC100129566 
LOC100129566          0.008   PREDICTED: hypothetical protein LOC100129566 
COL11A2               0.008   collagen, type XI, alpha 2 isoform 2 preproprotein ...
COL11A2               0.008   collagen, type XI, alpha 2 isoform 3 preproprotein ...
COL11A2               0.008   collagen, type XI, alpha 2 isoform 1 preproprotein ...
METTL2A               0.008   methyltransferase like 2A 
NLRP6                 0.008   NLR family, pyrin domain containing 6 
LOC100129566          0.006   PREDICTED: hypothetical protein LOC100129566 
C20orf7               0.006   hypothetical protein LOC79133 isoform 1 
ERI3                  0.006   prion protein interacting protein 
STK36                 0.006   serine/threonine kinase 36 
MSLNL                 0.006   mesothelin-like 
PRMT3                 0.006   protein arginine methyltransferase 3 isoform 3 [Hom...
PRMT3                 0.006   protein arginine methyltransferase 3 isoform 2 [Hom...
PRMT3                 0.006   protein arginine methyltransferase 3 isoform 1 [Homo...
COL4A6                0.006   type IV alpha 6 collagen isoform A precursor 
SSH2                  0.006   slingshot 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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