Guide to the Human Genome
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Name: C2orf56 Sequence: fasta or formatted (441aa) NCBI GI: 21396487
Description:

hypothetical protein LOC55471 isoform 1

Not currently referenced in the text

Other entries for this name:
alt prot {343aa} hypothetical protein LOC55471 isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         31           2
 C cysteine            0.9          4           1
 D aspartate           5.4         24           1
 E glutamate           5.2         23           2
 F phenylalanine       5.2         23           2
 G glycine             8.2         36           2
 H histidine           2.7         12           1
 I isoleucine          5.0         22           2
 K lysine              6.1         27           2
 L leucine            10.2         45           2
 M methionine          2.7         12           1
 N asparagine          2.3         10           1
 P proline             5.7         25           1
 Q glutamine           4.5         20           2
 R arginine            5.2         23           2
 S serine              6.1         27           2
 T threonine           5.0         22           1
 V valine              7.9         35           2
 W tryptophan          1.4          6           1
 Y tyrosine            3.2         14           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC55471 isoform 1 
C2orf56               0.478   hypothetical protein LOC55471 isoform 3 
MYBPC3                0.007   myosin binding protein C, cardiac 
RNF121                0.007   ring finger protein 121 
METTL2B               0.006   methyltransferase like 2B 
METTL2A               0.006   methyltransferase like 2A 
NEK4                  0.005   NIMA-related kinase 4 
PVR                   0.005   poliovirus receptor isoform delta 
PVR                   0.005   poliovirus receptor isoform gamma 
PVR                   0.005   poliovirus receptor isoform beta 
PVR                   0.005   poliovirus receptor isoform alpha 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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