Search of human proteins with 9256612

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|9256612 protocadherin beta 2 precursor [Homo sapiens]
         (798 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|9256612 protocadherin beta 2 precursor [Homo sapiens]             1563   0.0  
gi|9256614 protocadherin beta 3 precursor [Homo sapiens]             1251   0.0  
gi|9256608 protocadherin beta 14 precursor [Homo sapiens]            1227   0.0  
gi|14195605 protocadherin beta 16 precursor [Homo sapiens]           1192   0.0  
gi|11036656 protocadherin beta 7 precursor [Homo sapiens]            1188   0.0  
gi|9256618 protocadherin beta 6 precursor [Homo sapiens]             1183   0.0  
gi|9256610 protocadherin beta 15 precursor [Homo sapiens]            1179   0.0  
gi|9256604 protocadherin beta 11 precursor [Homo sapiens]            1172   0.0  
gi|9256616 protocadherin beta 4 precursor [Homo sapiens]             1170   0.0  
gi|9256602 protocadherin beta 10 precursor [Homo sapiens]            1169   0.0  
gi|7661662 protocadherin beta 5 precursor [Homo sapiens]             1168   0.0  
gi|11276081 protocadherin beta 8 precursor [Homo sapiens]            1167   0.0  
gi|9256606 protocadherin beta 12 precursor [Homo sapiens]            1163   0.0  
gi|14195616 protocadherin beta 9 precursor [Homo sapiens]            1160   0.0  
gi|11036654 protocadherin beta 13 precursor [Homo sapiens]           1155   0.0  
gi|14195607 protocadherin beta 1 precursor [Homo sapiens]             788   0.0  
gi|11056032 protocadherin gamma subfamily A, 1 isoform 1 precurs...   643   0.0  
gi|14196459 protocadherin gamma subfamily A, 1 isoform 2 precurs...   643   0.0  
gi|11056063 protocadherin gamma subfamily A, 7 isoform 1 precurs...   636   0.0  
gi|14196477 protocadherin gamma subfamily A, 7 isoform 2 precurs...   636   0.0  
gi|14196471 protocadherin gamma subfamily A, 5 isoform 2 precurs...   630   e-180
gi|11056024 protocadherin gamma subfamily A, 5 isoform 1 precurs...   630   e-180
gi|14270505 protocadherin gamma subfamily B, 5 isoform 2 precurs...   627   e-179
gi|11128043 protocadherin gamma subfamily A, 9 isoform 1 precurs...   627   e-179
gi|11128031 protocadherin gamma subfamily B, 5 isoform 1 precurs...   627   e-179
gi|14270487 protocadherin gamma subfamily A, 9 isoform 2 precurs...   627   e-179
gi|11128041 protocadherin gamma subfamily A, 10 isoform 1 precur...   625   e-179
gi|14196448 protocadherin gamma subfamily A, 10 isoform 2 precur...   625   e-179
gi|14196451 protocadherin gamma subfamily A, 11 isoform 2 precur...   624   e-179
gi|11128039 protocadherin gamma subfamily A, 11 isoform 1 precur...   624   e-179

>gi|9256612 protocadherin beta 2 precursor [Homo sapiens]
          Length = 798

 Score = 1563 bits (4046), Expect = 0.0
 Identities = 798/798 (100%), Positives = 798/798 (100%)

Query: 1   MEAGEGKERVPKQRQVLIFFVLLGIAQASCQPRHYSVAEETESGSFVANLLKDLGLEIGE 60
           MEAGEGKERVPKQRQVLIFFVLLGIAQASCQPRHYSVAEETESGSFVANLLKDLGLEIGE
Sbjct: 1   MEAGEGKERVPKQRQVLIFFVLLGIAQASCQPRHYSVAEETESGSFVANLLKDLGLEIGE 60

Query: 61  LAVRGARVVSKGKKMHLQFDRQTGDLLLNEKLDREELCGPTEPCVLPFQVLLENPLQFFQ 120
           LAVRGARVVSKGKKMHLQFDRQTGDLLLNEKLDREELCGPTEPCVLPFQVLLENPLQFFQ
Sbjct: 61  LAVRGARVVSKGKKMHLQFDRQTGDLLLNEKLDREELCGPTEPCVLPFQVLLENPLQFFQ 120

Query: 121 AELRIRDVNDHSPVFLDKEILLKIPESITPGTTFLIERAQDLDVGTNSLQNYTISPNFHF 180
           AELRIRDVNDHSPVFLDKEILLKIPESITPGTTFLIERAQDLDVGTNSLQNYTISPNFHF
Sbjct: 121 AELRIRDVNDHSPVFLDKEILLKIPESITPGTTFLIERAQDLDVGTNSLQNYTISPNFHF 180

Query: 181 HLNLQDSLDGIILPQLVLNRALDREEQPEIRLTLTALDGGSPPRSGTALVRIEVVDINDN 240
           HLNLQDSLDGIILPQLVLNRALDREEQPEIRLTLTALDGGSPPRSGTALVRIEVVDINDN
Sbjct: 181 HLNLQDSLDGIILPQLVLNRALDREEQPEIRLTLTALDGGSPPRSGTALVRIEVVDINDN 240

Query: 241 VPEFAKLLYEVQIPEDSPVGSQVAIVSARDLDIGTNGEISYAFSQASEDIRKTFRLSAKS 300
           VPEFAKLLYEVQIPEDSPVGSQVAIVSARDLDIGTNGEISYAFSQASEDIRKTFRLSAKS
Sbjct: 241 VPEFAKLLYEVQIPEDSPVGSQVAIVSARDLDIGTNGEISYAFSQASEDIRKTFRLSAKS 300

Query: 301 GELLLRQKLDFESIQTYTVNIQATDGGGLSGTCVVFVQVMDLNDNPPELTMSTLINQIPE 360
           GELLLRQKLDFESIQTYTVNIQATDGGGLSGTCVVFVQVMDLNDNPPELTMSTLINQIPE
Sbjct: 301 GELLLRQKLDFESIQTYTVNIQATDGGGLSGTCVVFVQVMDLNDNPPELTMSTLINQIPE 360

Query: 361 NLQDTLIAVFSVSDPDSGDNGRMVCSIQDDLPFFLKPSVENFYTLVISTALDRETRSEYN 420
           NLQDTLIAVFSVSDPDSGDNGRMVCSIQDDLPFFLKPSVENFYTLVISTALDRETRSEYN
Sbjct: 361 NLQDTLIAVFSVSDPDSGDNGRMVCSIQDDLPFFLKPSVENFYTLVISTALDRETRSEYN 420

Query: 421 ITITVTDFGTPRLKTEHNITVLVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDR 480
           ITITVTDFGTPRLKTEHNITVLVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDR
Sbjct: 421 ITITVTDFGTPRLKTEHNITVLVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDR 480

Query: 481 DSGTNAQVTYSLLPPQDPHLPLASLVSINADNGHLFALQSLDYEALQAFEFRVGAADRGS 540
           DSGTNAQVTYSLLPPQDPHLPLASLVSINADNGHLFALQSLDYEALQAFEFRVGAADRGS
Sbjct: 481 DSGTNAQVTYSLLPPQDPHLPLASLVSINADNGHLFALQSLDYEALQAFEFRVGAADRGS 540

Query: 541 PALSSEALVRVLVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQ 600
           PALSSEALVRVLVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQ
Sbjct: 541 PALSSEALVRVLVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQ 600

Query: 601 NAWLSYQLLKATEPGLFGVWAHNGEVRTARLLRERDAAKQRLVVLVKDNGEPPRSATATL 660
           NAWLSYQLLKATEPGLFGVWAHNGEVRTARLLRERDAAKQRLVVLVKDNGEPPRSATATL
Sbjct: 601 NAWLSYQLLKATEPGLFGVWAHNGEVRTARLLRERDAAKQRLVVLVKDNGEPPRSATATL 660

Query: 661 HVLLVDGFSQPYLLLPEAAPAQAQADLLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSR 720
           HVLLVDGFSQPYLLLPEAAPAQAQADLLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSR
Sbjct: 661 HVLLVDGFSQPYLLLPEAAPAQAQADLLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSR 720

Query: 721 AASVGRCSVPEGPFPGQMVDVSGTGTLSQSYQYEVCLTGGSGTNEFKFLKPIIPNFVAQG 780
           AASVGRCSVPEGPFPGQMVDVSGTGTLSQSYQYEVCLTGGSGTNEFKFLKPIIPNFVAQG
Sbjct: 721 AASVGRCSVPEGPFPGQMVDVSGTGTLSQSYQYEVCLTGGSGTNEFKFLKPIIPNFVAQG 780

Query: 781 AERVSEANPSFRKSFEFT 798
           AERVSEANPSFRKSFEFT
Sbjct: 781 AERVSEANPSFRKSFEFT 798


>gi|9256614 protocadherin beta 3 precursor [Homo sapiens]
          Length = 796

 Score = 1251 bits (3238), Expect = 0.0
 Identities = 640/798 (80%), Positives = 702/798 (87%), Gaps = 2/798 (0%)

Query: 1   MEAGEGKERVPKQRQVLIFFVLLGIAQASCQPRHYSVAEETESGSFVANLLKDLGLEIGE 60
           MEAG   ER  +QRQVL+ FV LG + A  + R YSVAEE E G  +ANL KDLGL + E
Sbjct: 1   MEAGG--ERFLRQRQVLLLFVFLGGSLAGSESRRYSVAEEKEKGFLIANLAKDLGLRVEE 58

Query: 61  LAVRGARVVSKGKKMHLQFDRQTGDLLLNEKLDREELCGPTEPCVLPFQVLLENPLQFFQ 120
           LA RGA+VVSKG K H Q   QTGDLLLNEKLDREELCGPTEPC+L FQ+LL+NPLQF  
Sbjct: 59  LAARGAQVVSKGNKQHFQLSHQTGDLLLNEKLDREELCGPTEPCILHFQILLQNPLQFVT 118

Query: 121 AELRIRDVNDHSPVFLDKEILLKIPESITPGTTFLIERAQDLDVGTNSLQNYTISPNFHF 180
            ELRI DVNDHSPVF + E+ LKI ES  PGT   +  A+DLDVG NSLQNYTI+PN HF
Sbjct: 119 NELRIIDVNDHSPVFFENEMHLKILESTLPGTVIPLGNAEDLDVGRNSLQNYTITPNSHF 178

Query: 181 HLNLQDSLDGIILPQLVLNRALDREEQPEIRLTLTALDGGSPPRSGTALVRIEVVDINDN 240
           H+  +   DG   P+LVL++ALDREEQPE+ LTLTALDGGSPPRSGTA + I+V+DINDN
Sbjct: 179 HVLTRSRRDGRKYPELVLDKALDREEQPELSLTLTALDGGSPPRSGTAQINIQVLDINDN 238

Query: 241 VPEFAKLLYEVQIPEDSPVGSQVAIVSARDLDIGTNGEISYAFSQASEDIRKTFRLSAKS 300
            PEFA+ LYEV + E++PV S +  VSA DLD G+ G ISYAF  ASE+IRKTF+L+  +
Sbjct: 239 APEFAQPLYEVAVLENTPVNSVIVTVSASDLDTGSFGTISYAFFHASEEIRKTFQLNPIT 298

Query: 301 GELLLRQKLDFESIQTYTVNIQATDGGGLSGTCVVFVQVMDLNDNPPELTMSTLINQIPE 360
           G++ L + L+FE+I +Y V+I+A DGGGLSG   V VQV+D+NDNPPELT+S++ + IPE
Sbjct: 299 GDMQLVKYLNFEAINSYEVDIEAKDGGGLSGKSTVIVQVVDVNDNPPELTLSSVNSPIPE 358

Query: 361 NLQDTLIAVFSVSDPDSGDNGRMVCSIQDDLPFFLKPSVENFYTLVISTALDRETRSEYN 420
           N  +T++AVFSVSD DSGDNGR++CSI+++LPFFLKPSVENFYTLV   ALDRETRSEYN
Sbjct: 359 NSGETVLAVFSVSDLDSGDNGRVMCSIENNLPFFLKPSVENFYTLVSEGALDRETRSEYN 418

Query: 421 ITITVTDFGTPRLKTEHNITVLVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDR 480
           ITIT+TD GTPRLKT++NITVLVSDVNDNAPAFTQ SYTLFVRENNSPALHIGSVSATDR
Sbjct: 419 ITITITDLGTPRLKTKYNITVLVSDVNDNAPAFTQISYTLFVRENNSPALHIGSVSATDR 478

Query: 481 DSGTNAQVTYSLLPPQDPHLPLASLVSINADNGHLFALQSLDYEALQAFEFRVGAADRGS 540
           DSGTNAQVTYSLLPPQDPHLPL+SLVSINADNGHLFAL+SLDYEALQAFEFRVGA DRGS
Sbjct: 479 DSGTNAQVTYSLLPPQDPHLPLSSLVSINADNGHLFALRSLDYEALQAFEFRVGATDRGS 538

Query: 541 PALSSEALVRVLVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQ 600
           PALSSEALVRVLVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQ
Sbjct: 539 PALSSEALVRVLVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQ 598

Query: 601 NAWLSYQLLKATEPGLFGVWAHNGEVRTARLLRERDAAKQRLVVLVKDNGEPPRSATATL 660
           NAWLSYQLLKATEPGLFGVWAHNGEVRTARLL ERDAAK RLVVLVKDNGEPPRSATATL
Sbjct: 599 NAWLSYQLLKATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATL 658

Query: 661 HVLLVDGFSQPYLLLPEAAPAQAQADLLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSR 720
           HVLLVDGFSQPYL LPEAAPAQAQADLLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSR
Sbjct: 659 HVLLVDGFSQPYLPLPEAAPAQAQADLLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSR 718

Query: 721 AASVGRCSVPEGPFPGQMVDVSGTGTLSQSYQYEVCLTGGSGTNEFKFLKPIIPNFVAQG 780
           AASVGRCSVPEGPFPGQMVDVSGTGTLSQSYQYEVCLTGGSGTNEFKFLKPIIPNFVAQG
Sbjct: 719 AASVGRCSVPEGPFPGQMVDVSGTGTLSQSYQYEVCLTGGSGTNEFKFLKPIIPNFVAQG 778

Query: 781 AERVSEANPSFRKSFEFT 798
           AERVSEANPSFRKSFEF+
Sbjct: 779 AERVSEANPSFRKSFEFS 796


>gi|9256608 protocadherin beta 14 precursor [Homo sapiens]
          Length = 798

 Score = 1227 bits (3174), Expect = 0.0
 Identities = 618/784 (78%), Positives = 687/784 (87%)

Query: 12  KQRQVLIFFVLLGIAQASCQPRHYSVAEETESGSFVANLLKDLGLEIGELAVRGARVVSK 71
           ++RQVLIF VLLG+++A  +  HYSVAEETE GSFVANL +DLGL + EL+ R ARVVS 
Sbjct: 10  RKRQVLIFLVLLGLSRAGTESAHYSVAEETEIGSFVANLARDLGLGVEELSSREARVVSD 69

Query: 72  GKKMHLQFDRQTGDLLLNEKLDREELCGPTEPCVLPFQVLLENPLQFFQAELRIRDVNDH 131
             K +L  D  TG+LLLNEKLDR+ELCG TEPCVL FQV+LENPLQFF+ EL ++D+NDH
Sbjct: 70  DNKKYLHLDLLTGNLLLNEKLDRDELCGSTEPCVLHFQVVLENPLQFFRFELCVKDINDH 129

Query: 132 SPVFLDKEILLKIPESITPGTTFLIERAQDLDVGTNSLQNYTISPNFHFHLNLQDSLDGI 191
           SP FLDKEIL+KI E  T G TFL+E AQDLDVG+NSLQNYTISPN HF++ + DS D  
Sbjct: 130 SPTFLDKEILIKISEGTTVGATFLMESAQDLDVGSNSLQNYTISPNSHFYIKIPDSSDRK 189

Query: 192 ILPQLVLNRALDREEQPEIRLTLTALDGGSPPRSGTALVRIEVVDINDNVPEFAKLLYEV 251
           I P+LVL+RALD E++ E+RLTLTA+DGGSPP+SGT LV I+V+DINDN PEF + LYEV
Sbjct: 190 IYPELVLDRALDYEQEAELRLTLTAVDGGSPPKSGTTLVLIKVLDINDNAPEFPQSLYEV 249

Query: 252 QIPEDSPVGSQVAIVSARDLDIGTNGEISYAFSQASEDIRKTFRLSAKSGELLLRQKLDF 311
           Q+PED P+GS +A +SA+DLD G  G+ISY F  ASEDIRKTF ++  SGE+ LR  LDF
Sbjct: 250 QVPEDRPLGSWIATISAKDLDAGNYGKISYTFFHASEDIRKTFEINPISGEVNLRSPLDF 309

Query: 312 ESIQTYTVNIQATDGGGLSGTCVVFVQVMDLNDNPPELTMSTLINQIPENLQDTLIAVFS 371
           E IQ+YT+NIQATDGGGLSG C + V+VMD+NDNPPE+T+S++  +IPEN  +TL+A+FS
Sbjct: 310 EVIQSYTINIQATDGGGLSGKCTLLVKVMDINDNPPEVTISSITKRIPENASETLVALFS 369

Query: 372 VSDPDSGDNGRMVCSIQDDLPFFLKPSVENFYTLVISTALDRETRSEYNITITVTDFGTP 431
           + D DSGDNGRM+CSIQD+LPFFLKP+ +NF+TLV   ALDRE+++EYNITITVTD GTP
Sbjct: 370 ILDQDSGDNGRMICSIQDNLPFFLKPTFKNFFTLVSEKALDRESQAEYNITITVTDLGTP 429

Query: 432 RLKTEHNITVLVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVTYS 491
           RLKTE+NITVL+SDVNDNAP FTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQV YS
Sbjct: 430 RLKTEYNITVLLSDVNDNAPTFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVNYS 489

Query: 492 LLPPQDPHLPLASLVSINADNGHLFALQSLDYEALQAFEFRVGAADRGSPALSSEALVRV 551
           LLPPQD HLPLASLVSINADNGHLFAL+SLDYEALQ FEFRVGA DRGSPALSSEALVRV
Sbjct: 490 LLPPQDRHLPLASLVSINADNGHLFALRSLDYEALQEFEFRVGATDRGSPALSSEALVRV 549

Query: 552 LVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKA 611
           LVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKA
Sbjct: 550 LVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKA 609

Query: 612 TEPGLFGVWAHNGEVRTARLLRERDAAKQRLVVLVKDNGEPPRSATATLHVLLVDGFSQP 671
           TEPGLFGVWAHNGEVRTARLL ERDAAK RLVVLVKDNGEPPRSATATLHVLLVDGFSQP
Sbjct: 610 TEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQP 669

Query: 672 YLLLPEAAPAQAQADLLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAASVGRCSVPE 731
           YL LPEAAPAQAQAD LTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAASVGRCSVPE
Sbjct: 670 YLPLPEAAPAQAQADSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAASVGRCSVPE 729

Query: 732 GPFPGQMVDVSGTGTLSQSYQYEVCLTGGSGTNEFKFLKPIIPNFVAQGAERVSEANPSF 791
           GPFPG +VDVSGTGTLSQSYQYEVCLTGGSGTNEFKFLKPIIPNF      R      +F
Sbjct: 730 GPFPGHLVDVSGTGTLSQSYQYEVCLTGGSGTNEFKFLKPIIPNFQVHDTGRNMGEIENF 789

Query: 792 RKSF 795
           R SF
Sbjct: 790 RNSF 793


>gi|14195605 protocadherin beta 16 precursor [Homo sapiens]
          Length = 776

 Score = 1192 bits (3084), Expect = 0.0
 Identities = 595/765 (77%), Positives = 673/765 (87%)

Query: 12  KQRQVLIFFVLLGIAQASCQPRHYSVAEETESGSFVANLLKDLGLEIGELAVRGARVVSK 71
           +QRQVL+FFVLL ++ A  +   YSV EETE GSFVANL KDLGL + E++ R AR++S+
Sbjct: 10  RQRQVLVFFVLLSLSGAGAELGSYSVVEETERGSFVANLGKDLGLGLTEMSTRKARIISQ 69

Query: 72  GKKMHLQFDRQTGDLLLNEKLDREELCGPTEPCVLPFQVLLENPLQFFQAELRIRDVNDH 131
           G K HLQ   QTGDLL+NEKLDREELCGPTEPC+L FQVL+ENPL+ FQAELR+ D+NDH
Sbjct: 70  GNKQHLQLKAQTGDLLINEKLDREELCGPTEPCILHFQVLMENPLEIFQAELRVIDINDH 129

Query: 132 SPVFLDKEILLKIPESITPGTTFLIERAQDLDVGTNSLQNYTISPNFHFHLNLQDSLDGI 191
           SP+F +KE++LKIPE+   GT F +  A DLDVG+N++QNY ISP+ HF + + +  DG 
Sbjct: 130 SPMFTEKEMILKIPENSPLGTEFPLNHALDLDVGSNNVQNYKISPSSHFRVLIHEFRDGR 189

Query: 192 ILPQLVLNRALDREEQPEIRLTLTALDGGSPPRSGTALVRIEVVDINDNVPEFAKLLYEV 251
             P+LVL++ LDREE+P++RLTLTALDGGSPPRSGTA VRIEVVDINDN PEF + +Y+V
Sbjct: 190 KYPELVLDKELDREEEPQLRLTLTALDGGSPPRSGTAQVRIEVVDINDNAPEFEQPIYKV 249

Query: 252 QIPEDSPVGSQVAIVSARDLDIGTNGEISYAFSQASEDIRKTFRLSAKSGELLLRQKLDF 311
           QIPE+SP+GS VA VSARDLD G NG+ISY   Q SEDI KT  ++  +GE+ LR+++DF
Sbjct: 250 QIPENSPLGSLVATVSARDLDGGANGKISYTLFQPSEDISKTLEVNPMTGEVRLRKQVDF 309

Query: 312 ESIQTYTVNIQATDGGGLSGTCVVFVQVMDLNDNPPELTMSTLINQIPENLQDTLIAVFS 371
           E + +Y V I+ATDGGGLSG C + +QV+D+NDNPP++TMS L + IPEN  + ++AVFS
Sbjct: 310 EMVTSYEVRIKATDGGGLSGKCTLLLQVVDVNDNPPQVTMSALTSPIPENSPEIVVAVFS 369

Query: 372 VSDPDSGDNGRMVCSIQDDLPFFLKPSVENFYTLVISTALDRETRSEYNITITVTDFGTP 431
           VSDPDSG+NG+ + SIQ+DLPF LKPSV+NFYTLV   ALDRE R+EYNIT+TVTD GTP
Sbjct: 370 VSDPDSGNNGKTISSIQEDLPFLLKPSVKNFYTLVTERALDREARAEYNITLTVTDMGTP 429

Query: 432 RLKTEHNITVLVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVTYS 491
           RLKTEHNITV +SDVNDNAP FTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVTYS
Sbjct: 430 RLKTEHNITVQISDVNDNAPTFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVTYS 489

Query: 492 LLPPQDPHLPLASLVSINADNGHLFALQSLDYEALQAFEFRVGAADRGSPALSSEALVRV 551
           LLPPQDPHLPLASLVSINADNGHLFAL+SLDYEAL+ FEFRV A DRGSPALSSEALVRV
Sbjct: 490 LLPPQDPHLPLASLVSINADNGHLFALRSLDYEALREFEFRVSATDRGSPALSSEALVRV 549

Query: 552 LVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKA 611
           LVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKA
Sbjct: 550 LVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKA 609

Query: 612 TEPGLFGVWAHNGEVRTARLLRERDAAKQRLVVLVKDNGEPPRSATATLHVLLVDGFSQP 671
           TEPGLFGVWAHNGEVRTARLL ERDAAKQRLVVLVKDNGEPPRSATATLHVLLVDGFSQP
Sbjct: 610 TEPGLFGVWAHNGEVRTARLLSERDAAKQRLVVLVKDNGEPPRSATATLHVLLVDGFSQP 669

Query: 672 YLLLPEAAPAQAQADLLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAASVGRCSVPE 731
           +L LPEAAP Q QA+ LTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAASVGRCS+PE
Sbjct: 670 FLPLPEAAPGQTQANSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAASVGRCSMPE 729

Query: 732 GPFPGQMVDVSGTGTLSQSYQYEVCLTGGSGTNEFKFLKPIIPNF 776
           GPFPG++VDVSGTGTLSQSYQYEVCLTGGS T+EFKFLKPIIPNF
Sbjct: 730 GPFPGRLVDVSGTGTLSQSYQYEVCLTGGSETSEFKFLKPIIPNF 774


>gi|11036656 protocadherin beta 7 precursor [Homo sapiens]
          Length = 793

 Score = 1188 bits (3073), Expect = 0.0
 Identities = 607/790 (76%), Positives = 667/790 (84%), Gaps = 2/790 (0%)

Query: 8   ERVPKQRQVLIFFVLLGIAQASCQPRHYSVAEETESGSFVANLLKDLGLEIGELAVRGAR 67
           ER  ++RQVL   V LG++ A  +P  Y VAEETE G+F+ NL KDLGL +GEL  RG R
Sbjct: 6   ERAVQKRQVLFLCVFLGMSWAGAEPLRYFVAEETERGTFLTNLAKDLGLGVGELRARGTR 65

Query: 68  VVSKGKKMHLQFDRQTGDLLLNEKLDREELCGPTEPCVLPFQVLLENPLQFFQAELRIRD 127
           +VS      L     TGDLLLNEKLDREELCGP EPCVLPFQ+LLE P Q F+AEL +RD
Sbjct: 66  IVSDQNMQILLLSSLTGDLLLNEKLDREELCGPREPCVLPFQLLLEKPFQIFRAELWVRD 125

Query: 128 VNDHSPVFLDKEILLKIPESITPGTTFLIERAQDLDVGTNSLQNYTISPNFHFHLNLQDS 187
           +NDH+PVFLD+EI LKI ES TPG  FL+E AQD DVGTNSL NYTISPN +FH+N+ DS
Sbjct: 126 INDHAPVFLDREISLKILESTTPGAAFLLESAQDSDVGTNSLSNYTISPNAYFHINVHDS 185

Query: 188 LDGIILPQLVLNRALDREEQPEIRLTLTALDGGSPPRSGTALVRIEVVDINDNVPEFAKL 247
            +G I P+LVLN+ LDREE PE  LTLTALDGGSPPRSGTALVRI V+D+NDN P+F + 
Sbjct: 186 GEGNIYPELVLNQVLDREEIPEFSLTLTALDGGSPPRSGTALVRILVLDVNDNAPDFVRS 245

Query: 248 LYEVQIPEDSPVGSQVAIVSARDLDIGTNGEISYAFSQASEDIRKTFRLSAKSGELLLRQ 307
           LY+VQ+PE+SPVGS V  VSARDLD G+NGEI+YAFS A+E I KTF+++  SG L L+ 
Sbjct: 246 LYKVQVPENSPVGSMVVSVSARDLDTGSNGEIAYAFSYATERILKTFQINPTSGSLHLKA 305

Query: 308 KLDFESIQTYTVNIQATDGGGLSGTCVVFVQVMDLNDNPPELTMSTLINQIPENLQDTLI 367
           +LD+E+IQTYT+ IQA DGGGLSG C V V V D+NDN PEL +S+L + I EN  +T++
Sbjct: 306 QLDYEAIQTYTLTIQAKDGGGLSGKCTVVVDVTDINDNRPELLLSSLTSPIAENSPETVV 365

Query: 368 AVFSVSDPDSGDNGRMVCSIQDDLPFFLKPSVENFYTLVISTALDRETRSEYNITITVTD 427
           AVF + D DSG+NG+ VCSIQDD+PF LKPSVENFYTLV    LDRE  +EYNITITVTD
Sbjct: 366 AVFRIRDRDSGNNGKTVCSIQDDVPFILKPSVENFYTLVTEKPLDRERNTEYNITITVTD 425

Query: 428 FGTPRLKTEHNITVLVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQ 487
            GTPRLKTEHNITVLVSDVNDNAPAFTQTSYTLFVRENNSPAL IGSVSATDRDSGTNAQ
Sbjct: 426 LGTPRLKTEHNITVLVSDVNDNAPAFTQTSYTLFVRENNSPALPIGSVSATDRDSGTNAQ 485

Query: 488 VTYSLLPPQDPHLPLASLVSINADNGHLFALQSLDYEALQAFEFRVGAADRGSPALSSEA 547
           V YSLLP QDPHLPLASLVSINADNGHLFAL+SLDYEALQAFEFRVGA DRGSPALSSEA
Sbjct: 486 VIYSLLPSQDPHLPLASLVSINADNGHLFALRSLDYEALQAFEFRVGATDRGSPALSSEA 545

Query: 548 LVRVLVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQ 607
           LVRVLVLDANDNSPFVLYPLQN SAPCTE +PRAAEPGYLVTKVVAVDGDSGQNAWLSYQ
Sbjct: 546 LVRVLVLDANDNSPFVLYPLQNSSAPCTEPLPRAAEPGYLVTKVVAVDGDSGQNAWLSYQ 605

Query: 608 LLKATEPGLFGVWAHNGEVRTARLLRERDAAKQRLVVLVKDNGEPPRSATATLHVLLVDG 667
           LLKATEPGLFGVWAHNGEVRTARLL ERDAAKQRLVVLVKDNGEPPRSATATLHVLLVDG
Sbjct: 606 LLKATEPGLFGVWAHNGEVRTARLLSERDAAKQRLVVLVKDNGEPPRSATATLHVLLVDG 665

Query: 668 FSQPYLLLPEAAPAQAQADLLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAASVGRC 727
           FSQPYL LPEAAP QA +  LTVYLVVALASVSSLFL SVLLFVAVRLCRRSRAA VGRC
Sbjct: 666 FSQPYLRLPEAAPDQANS--LTVYLVVALASVSSLFLLSVLLFVAVRLCRRSRAAPVGRC 723

Query: 728 SVPEGPFPGQMVDVSGTGTLSQSYQYEVCLTGGSGTNEFKFLKPIIPNFVAQGAERVSEA 787
           SVPEGPFP  +VD+SGTGTLSQSYQYEVCLTGGSGTNEFKFLKPIIPN + Q   R  E 
Sbjct: 724 SVPEGPFPRHLVDLSGTGTLSQSYQYEVCLTGGSGTNEFKFLKPIIPNLLPQSTGREVEE 783

Query: 788 NPSFRKSFEF 797
           N  F+ +  F
Sbjct: 784 NRPFQNNLGF 793


>gi|9256618 protocadherin beta 6 precursor [Homo sapiens]
          Length = 794

 Score = 1183 bits (3060), Expect = 0.0
 Identities = 600/787 (76%), Positives = 677/787 (86%), Gaps = 1/787 (0%)

Query: 12  KQRQVLIFFVLLGIAQASCQPRHYSVAEETESGSFVANLLKDLGLEIGELAVRGARVVSK 71
           K+RQV  F +L+   +   +   YSV EETESG+FVANL KDLGL +GELA RGARVV K
Sbjct: 9   KKRQVAFFILLMLWGEVGSESIQYSVLEETESGTFVANLTKDLGLRVGELASRGARVVFK 68

Query: 72  GKKMHLQFDRQTGDLLLNEKLDREELCGPTEPCVLPFQVLLENPLQFFQAELRIRDVNDH 131
           G + HLQFD QT DLLLNEKLDREELCG TEPCVLPFQVLLENPLQFFQA LR+RD+NDH
Sbjct: 69  GNRQHLQFDPQTHDLLLNEKLDREELCGSTEPCVLPFQVLLENPLQFFQASLRVRDINDH 128

Query: 132 SPVFLDKEILLKIPESITPGTTFLIERAQDLDVGTNSLQNYTISPNFHFHLNLQDSLDGI 191
           +P F  +E+LLKI E   PG  F ++ A DLD G+N LQ YTIS N HFH+  ++  +G 
Sbjct: 129 APEFPAREMLLKISEITMPGKIFPLKMAHDLDTGSNGLQRYTISSNPHFHVLTRNRSEGR 188

Query: 192 ILPQLVLNRALDREEQPEIRLTLTALDGGSPPRSGTALVRIEVVDINDNVPEFAKLLYEV 251
             P+LVL++ LDREEQP++RLTL ALDGGSPPRSGT+ ++I+V+DINDNVPEFA+ LYE 
Sbjct: 189 KFPELVLDKPLDREEQPQLRLTLIALDGGSPPRSGTSEIQIQVLDINDNVPEFAQELYEA 248

Query: 252 QIPEDSPVGSQVAIVSARDLDIGTNGEISYAFSQASEDIRKTFRLSAKSGELLLRQKLDF 311
           Q+PE++P+GS V  VSARDLD G+ G++SYA  Q  +D+ + F ++A +GE+ LR+ LDF
Sbjct: 249 QVPENNPLGSLVITVSARDLDAGSFGKVSYALFQV-DDVNQPFEINAITGEIRLRKALDF 307

Query: 312 ESIQTYTVNIQATDGGGLSGTCVVFVQVMDLNDNPPELTMSTLINQIPENLQDTLIAVFS 371
           E IQ+Y V+++ATDGGGLSG C + V+V+D+NDN PELTMS  I+ IPENL +  +AVFS
Sbjct: 308 EEIQSYDVDVEATDGGGLSGKCSLVVRVLDVNDNAPELTMSFFISLIPENLPEITVAVFS 367

Query: 372 VSDPDSGDNGRMVCSIQDDLPFFLKPSVENFYTLVISTALDRETRSEYNITITVTDFGTP 431
           VSD DSG N +++CSI+++LPF L+PSVENFYTLV   ALDRE+R+EYNITITVTD GTP
Sbjct: 368 VSDADSGHNQQVICSIENNLPFLLRPSVENFYTLVTEGALDRESRAEYNITITVTDLGTP 427

Query: 432 RLKTEHNITVLVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVTYS 491
           RLKT+ +ITV VSDVNDN PAFTQTSYTLFVRENNSPALHIGSVSATDRDSG NAQVTYS
Sbjct: 428 RLKTQQSITVQVSDVNDNVPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGINAQVTYS 487

Query: 492 LLPPQDPHLPLASLVSINADNGHLFALQSLDYEALQAFEFRVGAADRGSPALSSEALVRV 551
           LLPPQDPHLPL+SLVSINADNGHLFAL+SLDYEALQ+FEFRVGA DRGSPALSSEALVR+
Sbjct: 488 LLPPQDPHLPLSSLVSINADNGHLFALRSLDYEALQSFEFRVGATDRGSPALSSEALVRL 547

Query: 552 LVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKA 611
           LVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKA
Sbjct: 548 LVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKA 607

Query: 612 TEPGLFGVWAHNGEVRTARLLRERDAAKQRLVVLVKDNGEPPRSATATLHVLLVDGFSQP 671
           TE GLFGVWAHNGEVRTARLL ERDAAK RLVVLVKDNGEPPRSATATLHVLLVDGFSQP
Sbjct: 608 TELGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQP 667

Query: 672 YLLLPEAAPAQAQADLLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAASVGRCSVPE 731
           YL LPEAAPAQAQAD LTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAASVGR SVPE
Sbjct: 668 YLPLPEAAPAQAQADSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAASVGRYSVPE 727

Query: 732 GPFPGQMVDVSGTGTLSQSYQYEVCLTGGSGTNEFKFLKPIIPNFVAQGAERVSEANPSF 791
           GPFPG +VDVSGTGTLSQSYQY+VCLTGGS TNEFKFLKPI+PNF  QG ER  E  P+ 
Sbjct: 728 GPFPGHLVDVSGTGTLSQSYQYKVCLTGGSETNEFKFLKPIMPNFPPQGTEREMEETPTS 787

Query: 792 RKSFEFT 798
           R SF F+
Sbjct: 788 RNSFPFS 794


>gi|9256610 protocadherin beta 15 precursor [Homo sapiens]
          Length = 787

 Score = 1179 bits (3050), Expect = 0.0
 Identities = 595/779 (76%), Positives = 673/779 (86%)

Query: 8   ERVPKQRQVLIFFVLLGIAQASCQPRHYSVAEETESGSFVANLLKDLGLEIGELAVRGAR 67
           ER P+QRQVLI  +LL +  A  +PR YSV EETE GSFVANL  DLGL +GELA RGAR
Sbjct: 6   ERFPEQRQVLILLLLLEVTLAGWEPRRYSVMEETERGSFVANLANDLGLGVGELAERGAR 65

Query: 68  VVSKGKKMHLQFDRQTGDLLLNEKLDREELCGPTEPCVLPFQVLLENPLQFFQAELRIRD 127
           VVS+  +  LQ D QTG L+LNEKLDRE+LCGPTEPC++ FQVLL+ PL+ F+AEL + D
Sbjct: 66  VVSEDNEQGLQLDLQTGQLILNEKLDREKLCGPTEPCIMHFQVLLKKPLEVFRAELLVTD 125

Query: 128 VNDHSPVFLDKEILLKIPESITPGTTFLIERAQDLDVGTNSLQNYTISPNFHFHLNLQDS 187
           +NDHSP F ++E+ LKIPE+ + GT F +++A+DLDVG+N++QNY ISPN HFH++ +  
Sbjct: 126 INDHSPEFPEREMTLKIPETSSLGTVFPLKKARDLDVGSNNVQNYNISPNSHFHVSTRTR 185

Query: 188 LDGIILPQLVLNRALDREEQPEIRLTLTALDGGSPPRSGTALVRIEVVDINDNVPEFAKL 247
            DG   P+LVL+  LDREEQ E+RLTLTA+DGGSPPRSGT  + I V+D NDN PEF + 
Sbjct: 186 GDGRKYPELVLDTELDREEQAELRLTLTAVDGGSPPRSGTVQILILVLDANDNAPEFVQA 245

Query: 248 LYEVQIPEDSPVGSQVAIVSARDLDIGTNGEISYAFSQASEDIRKTFRLSAKSGELLLRQ 307
           LYEVQ+PE+SPVGS V  VSARDLD GTNGEISY+   +S++I K F LS+ SGE+ L +
Sbjct: 246 LYEVQVPENSPVGSLVVKVSARDLDTGTNGEISYSLYYSSQEIDKPFELSSLSGEIRLIK 305

Query: 308 KLDFESIQTYTVNIQATDGGGLSGTCVVFVQVMDLNDNPPELTMSTLINQIPENLQDTLI 367
           KLDFE++ +Y ++I+A+DGGGLSG C V V+V+D+NDN PEL++S+L + IPEN  +T +
Sbjct: 306 KLDFETMSSYDLDIEASDGGGLSGKCSVSVKVLDVNDNFPELSISSLTSPIPENSPETEV 365

Query: 368 AVFSVSDPDSGDNGRMVCSIQDDLPFFLKPSVENFYTLVISTALDRETRSEYNITITVTD 427
           A+F + D DSG+NG+M+CSIQDD+PF LKPSVENFY LV   ALDRETR+EYNITIT+TD
Sbjct: 366 ALFRIRDRDSGENGKMICSIQDDVPFKLKPSVENFYRLVTEGALDRETRAEYNITITITD 425

Query: 428 FGTPRLKTEHNITVLVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQ 487
            GTPRLKTE +ITVLVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQ
Sbjct: 426 LGTPRLKTEQSITVLVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQ 485

Query: 488 VTYSLLPPQDPHLPLASLVSINADNGHLFALQSLDYEALQAFEFRVGAADRGSPALSSEA 547
           VTYSLLPP+DPHLPL SLVSIN DNGHLFALQSLDYEALQAFEFRVGA DRG PALSSEA
Sbjct: 486 VTYSLLPPRDPHLPLTSLVSINTDNGHLFALQSLDYEALQAFEFRVGATDRGFPALSSEA 545

Query: 548 LVRVLVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQ 607
           LVRVLVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQ
Sbjct: 546 LVRVLVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQ 605

Query: 608 LLKATEPGLFGVWAHNGEVRTARLLRERDAAKQRLVVLVKDNGEPPRSATATLHVLLVDG 667
           LLKATEPGLFGVWAHNGEVRTARLL ERD AK RLVVLVKDNGEPPRSATATL VLLVDG
Sbjct: 606 LLKATEPGLFGVWAHNGEVRTARLLSERDVAKHRLVVLVKDNGEPPRSATATLQVLLVDG 665

Query: 668 FSQPYLLLPEAAPAQAQADLLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAASVGRC 727
           FSQPYL LPEAAPAQAQAD LTVYLVVALASVSSLFLFSV LFVAVRLCRRSRAASVGRC
Sbjct: 666 FSQPYLPLPEAAPAQAQADSLTVYLVVALASVSSLFLFSVFLFVAVRLCRRSRAASVGRC 725

Query: 728 SVPEGPFPGQMVDVSGTGTLSQSYQYEVCLTGGSGTNEFKFLKPIIPNFVAQGAERVSE 786
           SVPEGPFPG +VDVSGTGTLSQSYQYEVCLTGGS +N+FKFLKPI PN V+Q + R SE
Sbjct: 726 SVPEGPFPGHLVDVSGTGTLSQSYQYEVCLTGGSESNDFKFLKPIFPNIVSQDSRRKSE 784


>gi|9256604 protocadherin beta 11 precursor [Homo sapiens]
          Length = 797

 Score = 1172 bits (3032), Expect = 0.0
 Identities = 595/789 (75%), Positives = 670/789 (84%)

Query: 9   RVPKQRQVLIFFVLLGIAQASCQPRHYSVAEETESGSFVANLLKDLGLEIGELAVRGARV 68
           R  + RQVL+ FVLLG++QA  +   +SVAEE +SGSFV NL KDLGL++ EL+ RGARV
Sbjct: 7   RTQQIRQVLLLFVLLGMSQAGSETWSFSVAEEMQSGSFVGNLAKDLGLKVRELSSRGARV 66

Query: 69  VSKGKKMHLQFDRQTGDLLLNEKLDREELCGPTEPCVLPFQVLLENPLQFFQAELRIRDV 128
           VS  KK  LQ D  TGDLLL+E LDREELCG  EPCVL  QVL++NP QF Q EL++RD+
Sbjct: 67  VSNDKKQRLQLDINTGDLLLSETLDREELCGSIEPCVLHLQVLMQNPTQFLQIELQVRDI 126

Query: 129 NDHSPVFLDKEILLKIPESITPGTTFLIERAQDLDVGTNSLQNYTISPNFHFHLNLQDSL 188
           NDHSP+F +K++LL+IPE+   G  FL+E A+DLDVG N++++YTISPN HFH+ ++   
Sbjct: 127 NDHSPIFSEKQMLLEIPENSPVGAVFLLESAKDLDVGINAVKSYTISPNSHFHIKMRVIP 186

Query: 189 DGIILPQLVLNRALDREEQPEIRLTLTALDGGSPPRSGTALVRIEVVDINDNVPEFAKLL 248
           D    P+LVL++ALD EE PE+   L+ALDGGSPPRSGTALVR+ VVDINDN PEF +  
Sbjct: 187 DNRKYPELVLDKALDYEELPELSFILSALDGGSPPRSGTALVRVVVVDINDNSPEFEQAF 246

Query: 249 YEVQIPEDSPVGSQVAIVSARDLDIGTNGEISYAFSQASEDIRKTFRLSAKSGELLLRQK 308
           YEV+I E+S +GS + IVSA DLD GTNGEI Y FS ASEDIRKTF ++ KSGE+ LR  
Sbjct: 247 YEVKIRENSILGSLILIVSAWDLDSGTNGEICYTFSHASEDIRKTFEINQKSGEITLRAP 306

Query: 309 LDFESIQTYTVNIQATDGGGLSGTCVVFVQVMDLNDNPPELTMSTLINQIPENLQDTLIA 368
           LDFE+I++Y++ IQATDGGGL G   V + V+D+NDN PE+T+S++ + IPEN  +T++ 
Sbjct: 307 LDFETIESYSIIIQATDGGGLFGKSTVIIHVIDVNDNAPEITVSSITSPIPENTPETVVM 366

Query: 369 VFSVSDPDSGDNGRMVCSIQDDLPFFLKPSVENFYTLVISTALDRETRSEYNITITVTDF 428
           VFS+ D DSGDNGR+VCSI +DLPF LK SVEN+YTL     LDRE+ +EYNITITVTD 
Sbjct: 367 VFSIQDIDSGDNGRIVCSIPEDLPFVLKSSVENYYTLETERPLDRESTAEYNITITVTDL 426

Query: 429 GTPRLKTEHNITVLVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQV 488
           G PRLKTEHN TVLVSDVNDNAP FTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQV
Sbjct: 427 GIPRLKTEHNTTVLVSDVNDNAPTFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQV 486

Query: 489 TYSLLPPQDPHLPLASLVSINADNGHLFALQSLDYEALQAFEFRVGAADRGSPALSSEAL 548
            YSLLPPQD HLPLASLVSIN DNGHLFAL+SLDYEALQAF+FRVGA DRGSPALSSEAL
Sbjct: 487 NYSLLPPQDLHLPLASLVSINTDNGHLFALRSLDYEALQAFDFRVGATDRGSPALSSEAL 546

Query: 549 VRVLVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQL 608
           VRVLVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQL
Sbjct: 547 VRVLVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQL 606

Query: 609 LKATEPGLFGVWAHNGEVRTARLLRERDAAKQRLVVLVKDNGEPPRSATATLHVLLVDGF 668
           LKATEPGLFGVWAHNGEVRTARLL ERDAAK RLVVLVKDNGEPPRSATATL VLLVDGF
Sbjct: 607 LKATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLQVLLVDGF 666

Query: 669 SQPYLLLPEAAPAQAQADLLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAASVGRCS 728
           SQPYL LPEAAPAQAQAD LTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAASVG CS
Sbjct: 667 SQPYLPLPEAAPAQAQADSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAASVGSCS 726

Query: 729 VPEGPFPGQMVDVSGTGTLSQSYQYEVCLTGGSGTNEFKFLKPIIPNFVAQGAERVSEAN 788
           VP+GPFPG +VDVSGTGTLSQSYQYEVCLTGGS TNEFKFLKP+IPN  A+G  + SE N
Sbjct: 727 VPKGPFPGHLVDVSGTGTLSQSYQYEVCLTGGSETNEFKFLKPVIPNIQAKGLGKNSEEN 786

Query: 789 PSFRKSFEF 797
            +FR SF F
Sbjct: 787 STFRNSFGF 795


>gi|9256616 protocadherin beta 4 precursor [Homo sapiens]
          Length = 795

 Score = 1170 bits (3028), Expect = 0.0
 Identities = 590/790 (74%), Positives = 666/790 (84%)

Query: 9   RVPKQRQVLIFFVLLGIAQASCQPRHYSVAEETESGSFVANLLKDLGLEIGELAVRGARV 68
           R+   RQVL F +++ ++Q   +P  YSV EETESGSFVA+L KDLGL IGELA R ARV
Sbjct: 6   RIHPNRQVLAFILMVFLSQVRLEPIRYSVLEETESGSFVAHLAKDLGLGIGELASRSARV 65

Query: 69  VSKGKKMHLQFDRQTGDLLLNEKLDREELCGPTEPCVLPFQVLLENPLQFFQAELRIRDV 128
           +S   K  LQ DRQTGDLLL EKLDREELCGP EPCVL FQV LE P+QFFQ EL I+D+
Sbjct: 66  LSDDDKQRLQLDRQTGDLLLREKLDREELCGPIEPCVLHFQVFLEMPVQFFQGELLIQDI 125

Query: 129 NDHSPVFLDKEILLKIPESITPGTTFLIERAQDLDVGTNSLQNYTISPNFHFHLNLQDSL 188
           NDHSP+F ++E+LLKI E+  PGT F +  A+DLDVG+N LQ YTISPN HFH+  ++  
Sbjct: 126 NDHSPIFPEREVLLKILENSQPGTLFPLLIAEDLDVGSNGLQKYTISPNSHFHILTRNHS 185

Query: 189 DGIILPQLVLNRALDREEQPEIRLTLTALDGGSPPRSGTALVRIEVVDINDNVPEFAKLL 248
           +G   P LV ++ LDREEQPE  LTL ALDGGSPPRSGT +VRI ++DINDN PEF    
Sbjct: 186 EGKKYPDLVQDKPLDREEQPEFSLTLVALDGGSPPRSGTVMVRILIMDINDNAPEFVHTP 245

Query: 249 YEVQIPEDSPVGSQVAIVSARDLDIGTNGEISYAFSQASEDIRKTFRLSAKSGELLLRQK 308
           Y VQ+ E+SP+ S +  V ARD+D G  G +SY   QAS++I++TF ++  +GE+LL++K
Sbjct: 246 YGVQVLENSPLDSPIVRVLARDIDAGNFGSVSYGLFQASDEIKQTFSINEVTGEILLKKK 305

Query: 309 LDFESIQTYTVNIQATDGGGLSGTCVVFVQVMDLNDNPPELTMSTLINQIPENLQDTLIA 368
           LDFE I++Y V I+ATDGGGLSG   V ++V+D+NDNPPEL +S+L + IPEN  +T+++
Sbjct: 306 LDFEKIKSYHVEIEATDGGGLSGKGTVVIEVVDVNDNPPELIISSLTSSIPENAPETVVS 365

Query: 369 VFSVSDPDSGDNGRMVCSIQDDLPFFLKPSVENFYTLVISTALDRETRSEYNITITVTDF 428
           +F + D DSG+NG+M+CSI D+LPF LKP+++NFYTLV    LDRET +EYNITI VTD 
Sbjct: 366 IFRIRDRDSGENGKMICSIPDNLPFILKPTLKNFYTLVTERPLDRETSAEYNITIAVTDL 425

Query: 429 GTPRLKTEHNITVLVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQV 488
           GTPRLKT+ NITV VSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQV
Sbjct: 426 GTPRLKTQQNITVQVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQV 485

Query: 489 TYSLLPPQDPHLPLASLVSINADNGHLFALQSLDYEALQAFEFRVGAADRGSPALSSEAL 548
           TYSLLPPQDPHLPLASLVSINADNGHLFAL+SLDYEALQAFEFRVGA+DRGSPALSSEAL
Sbjct: 486 TYSLLPPQDPHLPLASLVSINADNGHLFALRSLDYEALQAFEFRVGASDRGSPALSSEAL 545

Query: 549 VRVLVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQL 608
           VRVLVLD NDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQL
Sbjct: 546 VRVLVLDTNDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQL 605

Query: 609 LKATEPGLFGVWAHNGEVRTARLLRERDAAKQRLVVLVKDNGEPPRSATATLHVLLVDGF 668
           LKATEPGLFGVWAHNGEVRTARLL ERDAAK RLVVLVKDNGEPPRSATATLHVLLVDGF
Sbjct: 606 LKATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGF 665

Query: 669 SQPYLLLPEAAPAQAQADLLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAASVGRCS 728
           SQPYL LPEAAPAQAQAD LTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAASVGRCS
Sbjct: 666 SQPYLPLPEAAPAQAQADSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAASVGRCS 725

Query: 729 VPEGPFPGQMVDVSGTGTLSQSYQYEVCLTGGSGTNEFKFLKPIIPNFVAQGAERVSEAN 788
           VPEGPFPG +VDVSGTGTLSQSYQYEVCLTG SGT EFKFLKPI PN + Q   R  + N
Sbjct: 726 VPEGPFPGHLVDVSGTGTLSQSYQYEVCLTGDSGTGEFKFLKPIFPNLLVQDTGREVKEN 785

Query: 789 PSFRKSFEFT 798
           P FR S  F+
Sbjct: 786 PKFRNSLVFS 795


>gi|9256602 protocadherin beta 10 precursor [Homo sapiens]
          Length = 800

 Score = 1169 bits (3025), Expect = 0.0
 Identities = 590/789 (74%), Positives = 662/789 (83%), Gaps = 2/789 (0%)

Query: 11  PKQRQVLIFFVLLGIAQASCQPRHYSVAEETESGSFVANLLKDLGLEIGELAVRGARVVS 70
           P+QRQVL  F+  G++ A      YSV EETE GSFV NL KDLGL  GELA RG RVVS
Sbjct: 9   PRQRQVLFLFLFWGVSLAGSGFGRYSVTEETEKGSFVVNLAKDLGLAEGELAARGTRVVS 68

Query: 71  KGKKMHLQFDRQTGDLLLNEKLDREELCGPTEPCVLPFQVLLENPLQFFQAELRIRDVND 130
              K +L  D  TG+LL NEKLDRE+LCGP EPC+L FQ+L+++P Q ++AELR+RD+ND
Sbjct: 69  DDNKQYLLLDSHTGNLLTNEKLDREKLCGPKEPCMLYFQILMDDPFQIYRAELRVRDIND 128

Query: 131 HSPVFLDKEILLKIPESITPGTTFLIERAQDLDVGTNSLQNYTISPNFHFHLNLQDSLDG 190
           H+PVF DKE +LKI E+   GT F +ERAQD D G N +QNYTISPN  FH+N+    +G
Sbjct: 129 HAPVFQDKETVLKISENTAEGTAFRLERAQDPDGGLNGIQNYTISPNSFFHINISGGDEG 188

Query: 191 IILPQLVLNRALDREEQPEIRLTLTALDGGSPPRSGTALVRIEVVDINDNVPEFAKLLYE 250
           +I P+LVL++ALDREEQ E+ LTLTALDGGSP RSGT+ VRI V+D+NDN P+FA+ LYE
Sbjct: 189 MIYPELVLDKALDREEQGELSLTLTALDGGSPSRSGTSTVRIVVLDVNDNAPQFAQALYE 248

Query: 251 VQIPEDSPVGSQVAIVSARDLDIGTNGEISYAFSQASEDIRKTFRLSAKSGELLLRQKLD 310
            Q PE+SP+G  +  V A D+D G N E+SY+F  ASE+IR TF+++  SGE+ LR+ LD
Sbjct: 249 TQAPENSPIGFLIVKVWAEDVDSGVNAEVSYSFFDASENIRTTFQINPFSGEIFLRELLD 308

Query: 311 FESIQTYTVNIQATDGGGLSGTCVVFVQVMDLNDNPPELTMSTLINQIPENLQDTLIAVF 370
           +E + +Y +NIQA DGGGLS  C V V+V+D NDNPPEL +S+  N + EN  +T +AVF
Sbjct: 309 YELVNSYKINIQAMDGGGLSARCRVLVEVLDTNDNPPELIVSSFSNSVAENSPETPLAVF 368

Query: 371 SVSDPDSGDNGRMVCSIQDDLPFFLKPSVENFYTLVISTALDRETRSEYNITITVTDFGT 430
            ++D DSG+NG+MVC IQ++LPF LKPSVENFY L+   ALDRE R+EYNITITVTD GT
Sbjct: 369 KINDRDSGENGKMVCYIQENLPFLLKPSVENFYILITEGALDREIRAEYNITITVTDLGT 428

Query: 431 PRLKTEHNITVLVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVTY 490
           PRLKTEHNITVLVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVTY
Sbjct: 429 PRLKTEHNITVLVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVTY 488

Query: 491 SLLPPQDPHLPLASLVSINADNGHLFALQSLDYEALQAFEFRVGAADRGSPALSSEALVR 550
           SLLPPQDPHLPLASLVSINADNGHLFAL+SLDYEALQAFEFRVGA DRGSPALS EALVR
Sbjct: 489 SLLPPQDPHLPLASLVSINADNGHLFALRSLDYEALQAFEFRVGATDRGSPALSREALVR 548

Query: 551 VLVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLK 610
           VLVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLK
Sbjct: 549 VLVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLK 608

Query: 611 ATEPGLFGVWAHNGEVRTARLLRERDAAKQRLVVLVKDNGEPPRSATATLHVLLVDGFSQ 670
           ATEPGLFGVWAHNGEVRTARLL ERDAAK RLVVLVKDNGEPPRSATATLH+LLVDGFSQ
Sbjct: 609 ATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHLLLVDGFSQ 668

Query: 671 PYLLLPEAAPAQAQ--ADLLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAASVGRCS 728
           PYL LPEAAPAQAQ  ADLLTVYLVVALASVSSLFL SVLLFVAVRLCRRSRAASVGRCS
Sbjct: 669 PYLPLPEAAPAQAQAEADLLTVYLVVALASVSSLFLLSVLLFVAVRLCRRSRAASVGRCS 728

Query: 729 VPEGPFPGQMVDVSGTGTLSQSYQYEVCLTGGSGTNEFKFLKPIIPNFVAQGAERVSEAN 788
           VPEGPFPG +VDV G  TLSQSYQYEVCLTGG GT+EFKFLKP+I +  AQG  R  E N
Sbjct: 729 VPEGPFPGHLVDVRGAETLSQSYQYEVCLTGGPGTSEFKFLKPVISDIQAQGPGRKGEEN 788

Query: 789 PSFRKSFEF 797
            +FR SF F
Sbjct: 789 STFRNSFGF 797


>gi|7661662 protocadherin beta 5 precursor [Homo sapiens]
          Length = 795

 Score = 1168 bits (3022), Expect = 0.0
 Identities = 590/787 (74%), Positives = 667/787 (84%), Gaps = 1/787 (0%)

Query: 9   RVPKQRQVLIFFVLLGIAQASCQPRHYSVAEETESGSFVANLLKDLGLEIGELAVRGARV 68
           + P++RQV+   +LL + +A  +   YS+ EETESG  VANL KDLGL +GELA RGAR+
Sbjct: 7   KTPQKRQVMFLAILLLLWEAGSEAVRYSIPEETESGYSVANLAKDLGLGVGELATRGARM 66

Query: 69  VSKGKKMHLQFDRQTGDLLLNEKLDREELCGPTEPCVLPFQVLLENPLQFFQAELRIRDV 128
             KG K  LQ D +TG+LLL EKLDRE +CG TEPC+L FQ+LLENP+QFFQ +L++ D+
Sbjct: 67  HYKGNKELLQLDIKTGNLLLYEKLDREVMCGATEPCILHFQLLLENPVQFFQTDLQLTDI 126

Query: 129 NDHSPVFLDKEILLKIPESITPGTTFLIERAQDLDVGTNSLQNYTISPNFHFHLNLQDSL 188
           NDH+P F +KE+LLKIPES  PGT F ++ AQD D+G+N++QNYTISPN HFH+   +  
Sbjct: 127 NDHAPEFPEKEMLLKIPESTQPGTVFPLKIAQDFDIGSNTVQNYTISPNSHFHVATHNRG 186

Query: 189 DGIILPQLVLNRALDREEQPEIRLTLTALDGGSPPRSGTALVRIEVVDINDNVPEFAKLL 248
           DG   P+LVL++ALDREE+PE+ LTLTALDGG+PPRSGT  +RI V+D NDN PEF +  
Sbjct: 187 DGRKYPELVLDKALDREERPELSLTLTALDGGAPPRSGTTTIRIVVLDNNDNAPEFLQSF 246

Query: 249 YEVQIPEDSPVGSQVAIVSARDLDIGTNGEISYAFSQASEDIRKTFRLSAKSGELLLRQK 308
           YEVQ+PE+SP+ S V +VSARDLD G  G ++YA  Q  E + + F +  K+ E+ L++ 
Sbjct: 247 YEVQVPENSPLNSLVVVVSARDLDAGAYGSVAYALFQGDE-VTQPFVIDEKTAEIRLKRA 305

Query: 309 LDFESIQTYTVNIQATDGGGLSGTCVVFVQVMDLNDNPPELTMSTLINQIPENLQDTLIA 368
           LDFE+   Y V I ATDGGGLSG C V ++V+D+NDN PELTMSTL +  PEN  +T++A
Sbjct: 306 LDFEATPYYNVEIVATDGGGLSGKCTVAIEVVDVNDNAPELTMSTLSSPTPENAPETVVA 365

Query: 369 VFSVSDPDSGDNGRMVCSIQDDLPFFLKPSVENFYTLVISTALDRETRSEYNITITVTDF 428
           VFSVSDPDSGDNGRM+CSIQ+DLPF LKP+++NFYTLV    LDRE+++EYNITITVTD 
Sbjct: 366 VFSVSDPDSGDNGRMICSIQNDLPFLLKPTLKNFYTLVTQRTLDRESQAEYNITITVTDM 425

Query: 429 GTPRLKTEHNITVLVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQV 488
           GTPRLKTEHNITVLVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQV
Sbjct: 426 GTPRLKTEHNITVLVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQV 485

Query: 489 TYSLLPPQDPHLPLASLVSINADNGHLFALQSLDYEALQAFEFRVGAADRGSPALSSEAL 548
           TYSLLPPQ+PHL LASLVSINADNGHLFAL+SLDYEALQAFEFRVGA DRGSPALSSEAL
Sbjct: 486 TYSLLPPQNPHLRLASLVSINADNGHLFALRSLDYEALQAFEFRVGATDRGSPALSSEAL 545

Query: 549 VRVLVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQL 608
           VRVLVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQL
Sbjct: 546 VRVLVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQL 605

Query: 609 LKATEPGLFGVWAHNGEVRTARLLRERDAAKQRLVVLVKDNGEPPRSATATLHVLLVDGF 668
           LKATEPGLF +WAHNGEVRTARLL ERDAAK RLVVLVKDNGEPPRSATATLHVLLVDGF
Sbjct: 606 LKATEPGLFSMWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGF 665

Query: 669 SQPYLLLPEAAPAQAQADLLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAASVGRCS 728
           SQPYL LPEAAPAQAQAD LTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAASVGRCS
Sbjct: 666 SQPYLPLPEAAPAQAQADSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAASVGRCS 725

Query: 729 VPEGPFPGQMVDVSGTGTLSQSYQYEVCLTGGSGTNEFKFLKPIIPNFVAQGAERVSEAN 788
           VPEGPFPG +VDVSGTGTLSQSY YEVCLTG SG  EFKFLKPIIPN + QGA       
Sbjct: 726 VPEGPFPGHLVDVSGTGTLSQSYHYEVCLTGDSGAGEFKFLKPIIPNLLPQGAGEEIGKT 785

Query: 789 PSFRKSF 795
            +FR SF
Sbjct: 786 AAFRNSF 792


>gi|11276081 protocadherin beta 8 precursor [Homo sapiens]
          Length = 801

 Score = 1167 bits (3018), Expect = 0.0
 Identities = 587/788 (74%), Positives = 669/788 (84%), Gaps = 1/788 (0%)

Query: 12  KQRQVLIFFVLLGIAQA-SCQPRHYSVAEETESGSFVANLLKDLGLEIGELAVRGARVVS 70
           +QRQVL  F+LLG++ A + +PR YSV EETE  SFV NL KDLGLE  E + RG RVVS
Sbjct: 10  RQRQVLFSFLLLGLSLAGAAEPRSYSVVEETEGSSFVTNLAKDLGLEQREFSRRGVRVVS 69

Query: 71  KGKKMHLQFDRQTGDLLLNEKLDREELCGPTEPCVLPFQVLLENPLQFFQAELRIRDVND 130
           +G K+HLQ +++T DLLLNEKLDRE+LCG TEPCVL FQVLLE+P +FFQAEL++ D+ND
Sbjct: 70  RGNKLHLQLNQETADLLLNEKLDREDLCGHTEPCVLRFQVLLESPFEFFQAELQVIDIND 129

Query: 131 HSPVFLDKEILLKIPESITPGTTFLIERAQDLDVGTNSLQNYTISPNFHFHLNLQDSLDG 190
           HSPVFLDK++L+K+ ES  PGT F ++ A+DLD+G N+++NY ISPN +F +  +   DG
Sbjct: 130 HSPVFLDKQMLVKVSESSPPGTAFPLKNAEDLDIGQNNIENYIISPNSYFRVLTRKRSDG 189

Query: 191 IILPQLVLNRALDREEQPEIRLTLTALDGGSPPRSGTALVRIEVVDINDNVPEFAKLLYE 250
              P+LVL+ ALDREE+ E+RLTLTALDGGSPPRSGTA V IEVVD+NDN PEF +  Y 
Sbjct: 190 RKYPELVLDNALDREEEAELRLTLTALDGGSPPRSGTAQVYIEVVDVNDNAPEFQQPFYR 249

Query: 251 VQIPEDSPVGSQVAIVSARDLDIGTNGEISYAFSQASEDIRKTFRLSAKSGELLLRQKLD 310
           VQI EDSP+   V  VSA D+D G NGEISY+  QAS++I KTF++   +GE+ L+++LD
Sbjct: 250 VQISEDSPISFLVVKVSATDVDTGVNGEISYSLFQASDEISKTFKVDFLTGEIRLKKQLD 309

Query: 311 FESIQTYTVNIQATDGGGLSGTCVVFVQVMDLNDNPPELTMSTLINQIPENLQDTLIAVF 370
           FE  Q+Y VNI+A D GG SG C V +QV+D+ND+ PE+TMS   + IPEN  +T++A+F
Sbjct: 310 FEKFQSYEVNIEARDAGGFSGKCTVLIQVIDVNDHAPEVTMSAFTSPIPENAPETVVALF 369

Query: 371 SVSDPDSGDNGRMVCSIQDDLPFFLKPSVENFYTLVISTALDRETRSEYNITITVTDFGT 430
           SVSD DSG+NG++ CSIQ+DLPF LK SV NFYTL+  T LDRE+R+EYN+TITVTD GT
Sbjct: 370 SVSDLDSGENGKISCSIQEDLPFLLKSSVGNFYTLLTETPLDRESRAEYNVTITVTDLGT 429

Query: 431 PRLKTEHNITVLVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVTY 490
           PRL T  N+TVLVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVTY
Sbjct: 430 PRLTTHLNMTVLVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVTY 489

Query: 491 SLLPPQDPHLPLASLVSINADNGHLFALQSLDYEALQAFEFRVGAADRGSPALSSEALVR 550
           SLLPPQDPHLPLASLVSIN DNGHLFAL+SLDYEALQAFEFRVGA+DRGSPALSSEALVR
Sbjct: 490 SLLPPQDPHLPLASLVSINTDNGHLFALRSLDYEALQAFEFRVGASDRGSPALSSEALVR 549

Query: 551 VLVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLK 610
           VLVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLK
Sbjct: 550 VLVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLK 609

Query: 611 ATEPGLFGVWAHNGEVRTARLLRERDAAKQRLVVLVKDNGEPPRSATATLHVLLVDGFSQ 670
           ATEPGLFGVWAHNGEVRTARLL ERDAAKQRLVVLVKDNGEPP SATATLH+LLVDGFSQ
Sbjct: 610 ATEPGLFGVWAHNGEVRTARLLSERDAAKQRLVVLVKDNGEPPCSATATLHLLLVDGFSQ 669

Query: 671 PYLLLPEAAPAQAQADLLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAASVGRCSVP 730
           PYL LPEAAPAQ QAD LTVYLVVALASVSSLFLFSVLLFVAV LCRRSRAASVGRCSVP
Sbjct: 670 PYLPLPEAAPAQGQADSLTVYLVVALASVSSLFLFSVLLFVAVLLCRRSRAASVGRCSVP 729

Query: 731 EGPFPGQMVDVSGTGTLSQSYQYEVCLTGGSGTNEFKFLKPIIPNFVAQGAERVSEANPS 790
           EGPFPG +VDV GTG+LSQ+YQYEVCL GGSGTNEF+FLKP++PN          E N +
Sbjct: 730 EGPFPGHLVDVRGTGSLSQNYQYEVCLAGGSGTNEFQFLKPVLPNIQGHSFGPEMEQNSN 789

Query: 791 FRKSFEFT 798
           FR  F F+
Sbjct: 790 FRNGFGFS 797


>gi|9256606 protocadherin beta 12 precursor [Homo sapiens]
          Length = 795

 Score = 1163 bits (3008), Expect = 0.0
 Identities = 588/784 (75%), Positives = 664/784 (84%)

Query: 14  RQVLIFFVLLGIAQASCQPRHYSVAEETESGSFVANLLKDLGLEIGELAVRGARVVSKGK 73
           RQVL+FFVLLG++QA  +  ++ V EE +SGSFV NL K LGLE+ EL+ RGARVVS   
Sbjct: 12  RQVLLFFVLLGMSQAGSETGNFLVMEELQSGSFVGNLAKTLGLEVSELSSRGARVVSNDN 71

Query: 74  KMHLQFDRQTGDLLLNEKLDREELCGPTEPCVLPFQVLLENPLQFFQAELRIRDVNDHSP 133
           K  LQ D  TGDLLL E LDREELCG  EPCVL FQVL++NP QF Q EL++RD+NDHSP
Sbjct: 72  KECLQLDTNTGDLLLREMLDREELCGSNEPCVLYFQVLMKNPTQFLQIELQVRDINDHSP 131

Query: 134 VFLDKEILLKIPESITPGTTFLIERAQDLDVGTNSLQNYTISPNFHFHLNLQDSLDGIIL 193
           VFL+KE+LL+IPE+   G  FL+E A+DLDVG N++++YTI+PN HFH+ ++ + D    
Sbjct: 132 VFLEKEMLLEIPENSPVGAVFLLESAKDLDVGINAVKSYTINPNSHFHVKIRVNPDNRKY 191

Query: 194 PQLVLNRALDREEQPEIRLTLTALDGGSPPRSGTALVRIEVVDINDNVPEFAKLLYEVQI 253
           P+LVL++ALD EE+PE+   LTALDGGSPPRSGTALVR+ VVDINDN PEF +  YEV+I
Sbjct: 192 PELVLDKALDYEERPELSFILTALDGGSPPRSGTALVRVVVVDINDNSPEFEQAFYEVKI 251

Query: 254 PEDSPVGSQVAIVSARDLDIGTNGEISYAFSQASEDIRKTFRLSAKSGELLLRQKLDFES 313
            E+S +GS V  VSA DLD GTN E+SY FS ASEDIRKTF ++ KSG++ L   LDFE+
Sbjct: 252 LENSILGSLVVTVSAWDLDSGTNSELSYTFSHASEDIRKTFEINQKSGDITLTAPLDFEA 311

Query: 314 IQTYTVNIQATDGGGLSGTCVVFVQVMDLNDNPPELTMSTLINQIPENLQDTLIAVFSVS 373
           I++Y++ IQATDGGGL G   V +QVMD+NDN PE+T+S++ + IPEN  +T++ VF + 
Sbjct: 312 IESYSIIIQATDGGGLFGKSTVRIQVMDVNDNAPEITVSSITSPIPENTPETVVMVFRIR 371

Query: 374 DPDSGDNGRMVCSIQDDLPFFLKPSVENFYTLVISTALDRETRSEYNITITVTDFGTPRL 433
           D DSGDNG+MVCSI +D+PF LK SV N+YTL     LDRE+R+EYNITITVTD GTPRL
Sbjct: 372 DRDSGDNGKMVCSIPEDIPFVLKSSVNNYYTLETERPLDRESRAEYNITITVTDLGTPRL 431

Query: 434 KTEHNITVLVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVTYSLL 493
           KTEHNITVLVSDVNDNAPAFTQTSY LFVRENNSPALHIGS+SATDRDSGTNAQV YSLL
Sbjct: 432 KTEHNITVLVSDVNDNAPAFTQTSYALFVRENNSPALHIGSISATDRDSGTNAQVNYSLL 491

Query: 494 PPQDPHLPLASLVSINADNGHLFALQSLDYEALQAFEFRVGAADRGSPALSSEALVRVLV 553
           P QDPHLPLASLVSINADNGHLFAL+SLDYEALQ F+FRVGA D GSPALSSEALVRVLV
Sbjct: 492 PSQDPHLPLASLVSINADNGHLFALRSLDYEALQGFQFRVGATDHGSPALSSEALVRVLV 551

Query: 554 LDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATE 613
           LDANDNSPFVLYPLQNGSAPCTELVP AAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATE
Sbjct: 552 LDANDNSPFVLYPLQNGSAPCTELVPWAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATE 611

Query: 614 PGLFGVWAHNGEVRTARLLRERDAAKQRLVVLVKDNGEPPRSATATLHVLLVDGFSQPYL 673
           PGLFGVWAHNGEVRTARLL ERDAAK RLVVLVKDNGEPPRSATATLHVLLVDGFSQPYL
Sbjct: 612 PGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQPYL 671

Query: 674 LLPEAAPAQAQADLLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAASVGRCSVPEGP 733
            LPEAAPAQAQAD LTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAA VGRCSVPEGP
Sbjct: 672 PLPEAAPAQAQADSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAAPVGRCSVPEGP 731

Query: 734 FPGQMVDVSGTGTLSQSYQYEVCLTGGSGTNEFKFLKPIIPNFVAQGAERVSEANPSFRK 793
           FPG +VDVSGTGTLSQSY YEVC+TGGS +N+FKFLKPIIPNF+ Q      E NP F+ 
Sbjct: 732 FPGHLVDVSGTGTLSQSYHYEVCVTGGSRSNKFKFLKPIIPNFLPQSTGSEVEENPPFQN 791

Query: 794 SFEF 797
           +  F
Sbjct: 792 NLGF 795


>gi|14195616 protocadherin beta 9 precursor [Homo sapiens]
          Length = 797

 Score = 1160 bits (3001), Expect = 0.0
 Identities = 583/787 (74%), Positives = 659/787 (83%)

Query: 11  PKQRQVLIFFVLLGIAQASCQPRHYSVAEETESGSFVANLLKDLGLEIGELAVRGARVVS 70
           P+QRQVL  F+  G++ A      YSV EETE GSFV NL KDLGL  GELA RG RVVS
Sbjct: 9   PRQRQVLFLFLFWGVSLAGSGFGRYSVTEETEKGSFVVNLAKDLGLAEGELAARGTRVVS 68

Query: 71  KGKKMHLQFDRQTGDLLLNEKLDREELCGPTEPCVLPFQVLLENPLQFFQAELRIRDVND 130
              K +L  D  TG+LL NEKLDRE+LCGP EPC+L FQ+L+++P Q ++AELR+RD+ND
Sbjct: 69  DDNKQYLLLDSHTGNLLTNEKLDREKLCGPKEPCMLYFQILMDDPFQIYRAELRVRDIND 128

Query: 131 HSPVFLDKEILLKIPESITPGTTFLIERAQDLDVGTNSLQNYTISPNFHFHLNLQDSLDG 190
           HSPVF  KE++LKI E+   GT F +ERAQD D G NS+QNYTIS N  FH+ +  S +G
Sbjct: 129 HSPVFRHKEMVLKISENTAEGTAFRLERAQDPDEGHNSIQNYTISSNSFFHIKISGSDEG 188

Query: 191 IILPQLVLNRALDREEQPEIRLTLTALDGGSPPRSGTALVRIEVVDINDNVPEFAKLLYE 250
           +I P+LVL++ALDREEQ E+ LTLTALDGGSP RSGT+ +RI V+D+NDN P+FA+ LYE
Sbjct: 189 MIYPELVLDKALDREEQEELSLTLTALDGGSPSRSGTSTIRIVVLDVNDNAPQFAQALYE 248

Query: 251 VQIPEDSPVGSQVAIVSARDLDIGTNGEISYAFSQASEDIRKTFRLSAKSGELLLRQKLD 310
            Q PE+SPVGS +  VSA D D G N E+SY+F  ASEDI  TF+++  SGE+ LR+ LD
Sbjct: 249 TQAPENSPVGSLIVKVSAGDADSGVNAEVSYSFFDASEDILTTFQINPFSGEIFLRELLD 308

Query: 311 FESIQTYTVNIQATDGGGLSGTCVVFVQVMDLNDNPPELTMSTLINQIPENLQDTLIAVF 370
           +E + +Y +NIQA DGGGLS  C V ++V+D NDNPPEL +S+L N + EN    ++AVF
Sbjct: 309 YELVNSYKINIQAMDGGGLSARCTVLIKVLDSNDNPPELIISSLSNSVAENSPGIVLAVF 368

Query: 371 SVSDPDSGDNGRMVCSIQDDLPFFLKPSVENFYTLVISTALDRETRSEYNITITVTDFGT 430
            + D DSG+NG+ +C +QD+LPFFLKPSV+NFY L+   ALDRE+++EYNITITVTD GT
Sbjct: 369 KIKDRDSGENGKTICYVQDNLPFFLKPSVDNFYILMTEGALDRESKAEYNITITVTDLGT 428

Query: 431 PRLKTEHNITVLVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVTY 490
           PRLKTEH+IT+ VSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVTY
Sbjct: 429 PRLKTEHSITLQVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVTY 488

Query: 491 SLLPPQDPHLPLASLVSINADNGHLFALQSLDYEALQAFEFRVGAADRGSPALSSEALVR 550
           SLLPPQDPHLPLASLVSINADNGHLFAL+SLDYEALQAF+FRVGA+DRGSPALSSEALVR
Sbjct: 489 SLLPPQDPHLPLASLVSINADNGHLFALRSLDYEALQAFDFRVGASDRGSPALSSEALVR 548

Query: 551 VLVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLK 610
           VLVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLK
Sbjct: 549 VLVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLK 608

Query: 611 ATEPGLFGVWAHNGEVRTARLLRERDAAKQRLVVLVKDNGEPPRSATATLHVLLVDGFSQ 670
           ATEPGLFGVWAHNGEVRTARLL ERDAAK RLVVLVKDNGEPPRSATATLHVLLVDGFSQ
Sbjct: 609 ATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQ 668

Query: 671 PYLLLPEAAPAQAQADLLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAASVGRCSVP 730
           PYL LPEAAPAQAQADLLTVYLVVALASVSSLFL SVLLFVAVRLCRRSRAASVGRCSVP
Sbjct: 669 PYLPLPEAAPAQAQADLLTVYLVVALASVSSLFLLSVLLFVAVRLCRRSRAASVGRCSVP 728

Query: 731 EGPFPGQMVDVSGTGTLSQSYQYEVCLTGGSGTNEFKFLKPIIPNFVAQGAERVSEANPS 790
           EGPFPG +VDVSGTGTL QSYQYEVCLTGGS T EFKFLKPI P+       +  E N +
Sbjct: 729 EGPFPGHLVDVSGTGTLFQSYQYEVCLTGGSETGEFKFLKPITPHLPPHRGGKEIEENST 788

Query: 791 FRKSFEF 797
              SF F
Sbjct: 789 LPNSFGF 795


>gi|11036654 protocadherin beta 13 precursor [Homo sapiens]
          Length = 798

 Score = 1155 bits (2989), Expect = 0.0
 Identities = 586/787 (74%), Positives = 670/787 (85%), Gaps = 2/787 (0%)

Query: 12  KQRQVLIFFVLLGIAQA-SCQPRHYSVAEETESGSFVANLLKDLGLEIGELAVRGARVVS 70
           +QRQVL  F+LLG++ A + +PR YSV EETE  SFV NL KDLGLE  E + RG RVVS
Sbjct: 10  RQRQVLFSFLLLGLSLAGAAEPRSYSVVEETEGSSFVTNLAKDLGLEQREFSRRGVRVVS 69

Query: 71  KGKKMHLQFDRQTGDLLLNEKLDREELCGPTEPCVLPFQVLLENPLQFFQAELRIRDVND 130
           +G K+HLQ +++T DLLLNEKLDRE+LCG TEPCVL FQVLLE+P +FFQAEL++ D+ND
Sbjct: 70  RGNKLHLQLNQETADLLLNEKLDREDLCGHTEPCVLRFQVLLESPFEFFQAELQVIDIND 129

Query: 131 HSPVFLDKEILLKIPESITPGTTFLIERAQDLDVGTNSLQNYTISPNFHFHLNLQDSLDG 190
           HSPVFLDK++L+K+ ES  PGTTF ++ A+DLDVG N+++NY ISPN +F +  +   DG
Sbjct: 130 HSPVFLDKQMLVKVSESSPPGTTFPLKNAEDLDVGQNNIENYIISPNSYFRVLTRKRSDG 189

Query: 191 IILPQLVLNRALDREEQPEIRLTLTALDGGSPPRSGTALVRIEVVDINDNVPEFAKLLYE 250
              P+LVL++ALDREE+ E+RLTLTALDGGSPPRSGTA V IEV+D+NDN PEF +  Y 
Sbjct: 190 RKYPELVLDKALDREEEAELRLTLTALDGGSPPRSGTAQVYIEVLDVNDNAPEFEQPFYR 249

Query: 251 VQIPEDSPVGSQVAIVSARDLDIGTNGEISYAFSQASEDIRKTFRLSAKSGELLLRQKLD 310
           VQI EDSPVG  V  VSA D+D G NGEISY+  QASE+I KTF+++  +GE+ L+++LD
Sbjct: 250 VQISEDSPVGFLVVKVSATDVDTGVNGEISYSLFQASEEIGKTFKINPLTGEIELKKQLD 309

Query: 311 FESIQTYTVNIQATDGGGLSGTCVVFVQVMDLNDNPPELTMSTLINQIPENLQDTLIAVF 370
           FE +Q+Y VNI+A D G  SG C V +QV+D+ND+ PE+TMS   + IPEN  +T++A+F
Sbjct: 310 FEKLQSYEVNIEARDAGTFSGKCTVLIQVIDVNDHAPEVTMSAFTSPIPENAPETVVALF 369

Query: 371 SVSDPDSGDNGRMVCSIQDDLPFFLKPSVENFYTLVISTALDRETRSEYNITITVTDFGT 430
           SVSD DSG+NG++ CSIQ+DLPF LK S ENFYTL+    LDRE+R+EYNITITVTD GT
Sbjct: 370 SVSDLDSGENGKISCSIQEDLPFLLK-SAENFYTLLTERPLDRESRAEYNITITVTDLGT 428

Query: 431 PRLKTEHNITVLVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVTY 490
           P L T+ N+TVL++DVNDNAPAFTQTSYTLFVRENNSPALHI SVSATDRDSGTNAQVTY
Sbjct: 429 PMLITQLNMTVLIADVNDNAPAFTQTSYTLFVRENNSPALHIRSVSATDRDSGTNAQVTY 488

Query: 491 SLLPPQDPHLPLASLVSINADNGHLFALQSLDYEALQAFEFRVGAADRGSPALSSEALVR 550
           SLLPPQDPHLPL SLVSINADNGHLFAL+SLDYEALQ F+FRVGA+D GSPALSSEALVR
Sbjct: 489 SLLPPQDPHLPLTSLVSINADNGHLFALRSLDYEALQGFQFRVGASDHGSPALSSEALVR 548

Query: 551 VLVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLK 610
           V+VLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLK
Sbjct: 549 VVVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLK 608

Query: 611 ATEPGLFGVWAHNGEVRTARLLRERDAAKQRLVVLVKDNGEPPRSATATLHVLLVDGFSQ 670
           ATE GLFGVWAHNGEVRTARLL ERDAAK RLVVLVKDNGEPPRSATATLHVLLVDGFSQ
Sbjct: 609 ATELGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQ 668

Query: 671 PYLLLPEAAPAQAQADLLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAASVGRCSVP 730
           PYL LPEAAP QAQADLLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAASVGRC VP
Sbjct: 669 PYLPLPEAAPTQAQADLLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAASVGRCLVP 728

Query: 731 EGPFPGQMVDVSGTGTLSQSYQYEVCLTGGSGTNEFKFLKPIIPNFVAQGAERVSEANPS 790
           EGP PG +VD+SGT TLSQSYQYEVCL GGSGTNEFKFLKPIIPNF  Q   +  + N +
Sbjct: 729 EGPLPGHLVDMSGTRTLSQSYQYEVCLAGGSGTNEFKFLKPIIPNFPPQCPGKEIQGNST 788

Query: 791 FRKSFEF 797
           F  +F F
Sbjct: 789 FPNNFGF 795


>gi|14195607 protocadherin beta 1 precursor [Homo sapiens]
          Length = 818

 Score =  788 bits (2036), Expect = 0.0
 Identities = 403/769 (52%), Positives = 546/769 (71%), Gaps = 4/769 (0%)

Query: 12  KQRQVLIFFVLLGIAQASCQPRHYSVAEETESGSFVANLLKDLGLEIGELAVRGARVVSK 71
           + RQV    + L I+        YSVAEE ESGSFVAN+ KDLGLE+G+LA RGAR+VS+
Sbjct: 10  QNRQVGSLLIFLCISVGDATTIRYSVAEEMESGSFVANVAKDLGLEVGKLAARGARLVSE 69

Query: 72  GKKMHLQFDRQTGDLLLNEKLDREELCGPTEPCVLPFQVLLENPLQFFQAELRIRDVNDH 131
           G KMH +  R+TGDL + EKLDRE LCG  +PCVL F+V+L  PLQ F+AE+R+ D+ND+
Sbjct: 70  GNKMHFRLHRKTGDLFVKEKLDRESLCGKADPCVLHFEVVLVEPLQSFRAEVRVFDINDN 129

Query: 132 SPVFLDKEILLKIPESITPGTTFLIERAQDLDVGTNSLQNYTISPNFHFHLNLQDSLDGI 191
           +PVFL+KE LLKIPES   G+ F ++ AQDLDVG N LQNYT+S N +FHL+ +    G 
Sbjct: 130 APVFLNKEPLLKIPESTPLGSRFPLQSAQDLDVGLNGLQNYTLSANGYFHLHTRFCSHGP 189

Query: 192 ILPQLVLNRALDREEQPEIRLTLTALDGGSPPRSGTALVRIEVVDINDNVPEFAKLLYEV 251
              +LVLN+ LDREEQPE+ LT+TA+DGGSPP+SGTA + + V+D+ND+VP+F++L+Y  
Sbjct: 190 KYAELVLNKPLDREEQPEVNLTITAVDGGSPPKSGTAHIHVVVLDVNDHVPQFSRLVYRA 249

Query: 252 QIPEDSPVGSQVAIVSARDLDIGTNGEISYAFSQASEDIRKTFRLSAKSGELLLRQKLDF 311
           Q+ E+SP GS VA V+A DLD GTN  I+Y+ +Q  E I KTF++  ++GE+ LR  LDF
Sbjct: 250 QVSENSPNGSLVATVTAVDLDEGTNKAITYSLAQNPEAILKTFQIDPQNGEVRLRGPLDF 309

Query: 312 ESIQTYTVNIQATDGGGLSGTCVVFVQVMDLNDNPPELTMSTLINQIPENL-QDTLIAVF 370
           E+I+TY ++IQATDGGGLS    V V+V+D+NDNPPE+ +S++ + +PE+    T++A+F
Sbjct: 310 EAIETYDIDIQATDGGGLSAHSKVLVEVVDVNDNPPEVMVSSVSSPLPEDSPPQTVVALF 369

Query: 371 SVSDPDSGDNGRMVCSIQDDLPFFLKPSVENFYTLVISTALDRETRSEYNITITVTDFGT 430
           ++ D D    G++ C +++DLPF +KP+  N Y+LV   +LDRE  S YNITI   D G 
Sbjct: 370 TIRDRDIRVGGKVTCFLREDLPFVIKPTFGNSYSLVTDRSLDREEVSGYNITIVAMDTGP 429

Query: 431 PRLKTEHNITVLVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVTY 490
           P L  E  I VL+SDVNDN P F + SY L VRENNSPA+ IG V A D D G NAQ+TY
Sbjct: 430 PSLSAETMIEVLISDVNDNPPIFREDSYILTVRENNSPAVFIGKVHAEDLDLGENAQITY 489

Query: 491 SLLPPQDPHLPLASLVSINADNGHLFALQSLDYEALQAFEFRVGAADRGSPALSSEALVR 550
           SLLPP++  L + + +SIN+ NG L+AL+++DYEA+Q F+F V A D G  +LSS+  VR
Sbjct: 490 SLLPPKNGDLSVFAYISINSGNGKLYALRTMDYEAIQDFQFVVKATDGGFLSLSSQVTVR 549

Query: 551 VLVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLK 610
           V+VLD NDN P +LYPLQNG+ PC +LVPR+AE GYLVTKVVAVDGDSGQN+WLSY LLK
Sbjct: 550 VVVLDDNDNRPMILYPLQNGTLPCNDLVPRSAEAGYLVTKVVAVDGDSGQNSWLSYHLLK 609

Query: 611 ATEPGLFGVWAHNGEVRTARLLRERDAAKQRLVVLVKDNGEPPRSATATLHVLLVDGFSQ 670
           AT+ GLF V   NGE+ T R + ERD   Q+L++LV+D+G+P  S T +L++LLVDGFS+
Sbjct: 610 ATDLGLFSVQRQNGEIHTLRQISERDPMMQKLIILVQDHGQPALSTTVSLNILLVDGFSE 669

Query: 671 PYLLLPEAAPAQAQADLLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSR---AASVGRC 727
           PYL   +      + +  T YLV++L  +S LFL SV++   + + ++ +     ++   
Sbjct: 670 PYLQFQDPTKHSRKVNPSTKYLVISLVILSFLFLLSVIVIFIIHVYQKIKYREKFTIQEH 729

Query: 728 SVPEGPFPGQMVDVSGTGTLSQSYQYEVCLTGGSGTNEFKFLKPIIPNF 776
              +  F   +V   G G+LS+   YE+C   G+G +EF+FLK  +PNF
Sbjct: 730 FYDDCNFSNNLVQGQGNGSLSRPCPYEMCSATGTGNSEFRFLKRFMPNF 778


>gi|11056032 protocadherin gamma subfamily A, 1 isoform 1 precursor
           [Homo sapiens]
          Length = 931

 Score =  643 bits (1659), Expect = 0.0
 Identities = 357/766 (46%), Positives = 485/766 (63%), Gaps = 12/766 (1%)

Query: 14  RQVLIFFVLLGIAQASCQPRHYSVAEETESGSFVANLLKDLGLEIGELAVRGARVVSKGK 73
           R +L+   L  + +A     HYSV EET+ GSFV N+ KDLGL+  ELA  G R+VS+G+
Sbjct: 12  RLMLLCLSLELLLEAGAGNIHYSVPEETDKGSFVGNIAKDLGLQPQELADGGVRIVSRGR 71

Query: 74  KMHLQFDRQTGDLLLNEKLDREELCGPTEPCVLPFQVLLENPLQFFQAELRIRDVNDHSP 133
                 + ++G L+   ++DREELC  + PC++ F +L+E+ ++ F  E+ I D+ND++P
Sbjct: 72  MPLFALNPRSGSLITARRIDREELCAQSMPCLVSFNILVEDKMKLFPVEVEIIDINDNTP 131

Query: 134 VFLDKEILLKIPESITPGTTFLIERAQDLDVGTNSLQNYTISPNFHFHLNLQDSLDGIIL 193
            F  +E+  K+ E  TPGT   +   QDLDVG NSLQ+Y +S N HF L++Q   DG   
Sbjct: 132 QFQLEELEFKMNEITTPGTRVSLPFGQDLDVGMNSLQSYQLSSNPHFSLDVQQGADGPQH 191

Query: 194 PQLVLNRALDREEQPEIRLTLTALDGGSPPRSGTALVRIEVVDINDNVPEFAKLLYEVQI 253
           P++VL   LDREE+    L LTA DGG P RSGT  + I+VVD NDN P F +  Y + +
Sbjct: 192 PEMVLQSPLDREEEAVHHLILTASDGGEPVRSGTLRIYIQVVDANDNPPAFTQAQYHINV 251

Query: 254 PEDSPVGSQVAIVSARDLDIGTNGEISYAFSQASEDIRKTFRLSAKSGELLLRQKLDFES 313
           PE+ P+G+Q+ +V+A D D G NGE++Y+F      + + FRL + +GE+  ++ LDFE 
Sbjct: 252 PENVPLGTQLLMVNATDPDEGANGEVTYSFHNVDHRVAQIFRLDSYTGEISNKEPLDFEE 311

Query: 314 IQTYTVNIQATDGGGLSGTCVVFVQVMDLNDNPPELTMSTLINQIPENL-QDTLIAVFSV 372
            + Y++ +QA DG GL     V ++V+D+NDN PE+T++++   +PEN    T+IA+ SV
Sbjct: 312 YKMYSMEVQAQDGAGLMAKVKVLIKVLDVNDNAPEVTITSVTTAVPENFPPGTIIALISV 371

Query: 373 SDPDSGDNGRMVCSIQDDLPFFLKPSVENFYTLVISTALDRETRSEYNITITVTDFGTPR 432
            D DSGDNG   C I  +LPF L+  V+N+Y LV    LDRE  S YNITIT  D GTP 
Sbjct: 372 HDQDSGDNGYTTCFIPGNLPFKLEKLVDNYYRLVTERTLDRELISGYNITITAIDQGTPA 431

Query: 433 LKTEHNITVLVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVTYSL 492
           L TE +I++LV+D+NDN+P F Q SY+ ++ ENN     I SV A D DS  NAQ+TYSL
Sbjct: 432 LSTETHISLLVTDINDNSPVFHQDSYSAYIPENNPRGASIFSVRAHDLDSNENAQITYSL 491

Query: 493 LPPQDPHLPLASLVSINADNGHLFALQSLDYEALQAFEFRVGAADRGSPALSSEALVRVL 552
           +       PL++ +SIN+D G L+AL+S DYE  +  + +V A D G P LSS   + + 
Sbjct: 492 IEDTIQGAPLSAYLSINSDTGVLYALRSFDYEQFRDMQLKVMARDSGDPPLSSNVSLSLF 551

Query: 553 VLDANDNSPFVLYP-LQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKA 611
           +LD NDN+P +LYP L    +   EL P +AEPGYLVTKVVAVD DSGQNAWLSY+LLKA
Sbjct: 552 LLDQNDNAPEILYPALPTDGSTGVELAPLSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKA 611

Query: 612 TEPGLFGVWAHNGEVRTARLLRERDAAKQRLVVLVKDNGEPPRSATATLHVLLVDGFSQP 671
           +EPGLF V  H GEVRTAR L +RDA KQ LVV V+D+G+PP SAT TL V + D  S  
Sbjct: 612 SEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADRISDI 671

Query: 672 YLLLPEAAPAQAQADL-LTVYLVVALASVSSLFLFSVLLFVAVRLCR--RSR---AASVG 725
              L    P+    D  LT+YLVVA A+VS +FL  V++ +A RL R  +SR   A+  G
Sbjct: 672 LADLGSLEPSAKPNDSDLTLYLVVAAAAVSCVFLAFVIVLLAHRLRRWHKSRLLQASGGG 731

Query: 726 RCSVPEGPFPGQMVDVSGTGTLSQSYQYEVCLTGGSGTNEFKFLKP 771
             S+P   F G    V G     Q+Y +EV LT  S  +   F +P
Sbjct: 732 LASMPGSHFVG----VDGVRAFLQTYSHEVSLTADSRKSHLIFPQP 773


>gi|14196459 protocadherin gamma subfamily A, 1 isoform 2 precursor
           [Homo sapiens]
          Length = 823

 Score =  643 bits (1659), Expect = 0.0
 Identities = 357/766 (46%), Positives = 485/766 (63%), Gaps = 12/766 (1%)

Query: 14  RQVLIFFVLLGIAQASCQPRHYSVAEETESGSFVANLLKDLGLEIGELAVRGARVVSKGK 73
           R +L+   L  + +A     HYSV EET+ GSFV N+ KDLGL+  ELA  G R+VS+G+
Sbjct: 12  RLMLLCLSLELLLEAGAGNIHYSVPEETDKGSFVGNIAKDLGLQPQELADGGVRIVSRGR 71

Query: 74  KMHLQFDRQTGDLLLNEKLDREELCGPTEPCVLPFQVLLENPLQFFQAELRIRDVNDHSP 133
                 + ++G L+   ++DREELC  + PC++ F +L+E+ ++ F  E+ I D+ND++P
Sbjct: 72  MPLFALNPRSGSLITARRIDREELCAQSMPCLVSFNILVEDKMKLFPVEVEIIDINDNTP 131

Query: 134 VFLDKEILLKIPESITPGTTFLIERAQDLDVGTNSLQNYTISPNFHFHLNLQDSLDGIIL 193
            F  +E+  K+ E  TPGT   +   QDLDVG NSLQ+Y +S N HF L++Q   DG   
Sbjct: 132 QFQLEELEFKMNEITTPGTRVSLPFGQDLDVGMNSLQSYQLSSNPHFSLDVQQGADGPQH 191

Query: 194 PQLVLNRALDREEQPEIRLTLTALDGGSPPRSGTALVRIEVVDINDNVPEFAKLLYEVQI 253
           P++VL   LDREE+    L LTA DGG P RSGT  + I+VVD NDN P F +  Y + +
Sbjct: 192 PEMVLQSPLDREEEAVHHLILTASDGGEPVRSGTLRIYIQVVDANDNPPAFTQAQYHINV 251

Query: 254 PEDSPVGSQVAIVSARDLDIGTNGEISYAFSQASEDIRKTFRLSAKSGELLLRQKLDFES 313
           PE+ P+G+Q+ +V+A D D G NGE++Y+F      + + FRL + +GE+  ++ LDFE 
Sbjct: 252 PENVPLGTQLLMVNATDPDEGANGEVTYSFHNVDHRVAQIFRLDSYTGEISNKEPLDFEE 311

Query: 314 IQTYTVNIQATDGGGLSGTCVVFVQVMDLNDNPPELTMSTLINQIPENL-QDTLIAVFSV 372
            + Y++ +QA DG GL     V ++V+D+NDN PE+T++++   +PEN    T+IA+ SV
Sbjct: 312 YKMYSMEVQAQDGAGLMAKVKVLIKVLDVNDNAPEVTITSVTTAVPENFPPGTIIALISV 371

Query: 373 SDPDSGDNGRMVCSIQDDLPFFLKPSVENFYTLVISTALDRETRSEYNITITVTDFGTPR 432
            D DSGDNG   C I  +LPF L+  V+N+Y LV    LDRE  S YNITIT  D GTP 
Sbjct: 372 HDQDSGDNGYTTCFIPGNLPFKLEKLVDNYYRLVTERTLDRELISGYNITITAIDQGTPA 431

Query: 433 LKTEHNITVLVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVTYSL 492
           L TE +I++LV+D+NDN+P F Q SY+ ++ ENN     I SV A D DS  NAQ+TYSL
Sbjct: 432 LSTETHISLLVTDINDNSPVFHQDSYSAYIPENNPRGASIFSVRAHDLDSNENAQITYSL 491

Query: 493 LPPQDPHLPLASLVSINADNGHLFALQSLDYEALQAFEFRVGAADRGSPALSSEALVRVL 552
           +       PL++ +SIN+D G L+AL+S DYE  +  + +V A D G P LSS   + + 
Sbjct: 492 IEDTIQGAPLSAYLSINSDTGVLYALRSFDYEQFRDMQLKVMARDSGDPPLSSNVSLSLF 551

Query: 553 VLDANDNSPFVLYP-LQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKA 611
           +LD NDN+P +LYP L    +   EL P +AEPGYLVTKVVAVD DSGQNAWLSY+LLKA
Sbjct: 552 LLDQNDNAPEILYPALPTDGSTGVELAPLSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKA 611

Query: 612 TEPGLFGVWAHNGEVRTARLLRERDAAKQRLVVLVKDNGEPPRSATATLHVLLVDGFSQP 671
           +EPGLF V  H GEVRTAR L +RDA KQ LVV V+D+G+PP SAT TL V + D  S  
Sbjct: 612 SEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADRISDI 671

Query: 672 YLLLPEAAPAQAQADL-LTVYLVVALASVSSLFLFSVLLFVAVRLCR--RSR---AASVG 725
              L    P+    D  LT+YLVVA A+VS +FL  V++ +A RL R  +SR   A+  G
Sbjct: 672 LADLGSLEPSAKPNDSDLTLYLVVAAAAVSCVFLAFVIVLLAHRLRRWHKSRLLQASGGG 731

Query: 726 RCSVPEGPFPGQMVDVSGTGTLSQSYQYEVCLTGGSGTNEFKFLKP 771
             S+P   F G    V G     Q+Y +EV LT  S  +   F +P
Sbjct: 732 LASMPGSHFVG----VDGVRAFLQTYSHEVSLTADSRKSHLIFPQP 773


>gi|11056063 protocadherin gamma subfamily A, 7 isoform 1 precursor
           [Homo sapiens]
          Length = 932

 Score =  636 bits (1641), Expect = 0.0
 Identities = 358/772 (46%), Positives = 491/772 (63%), Gaps = 16/772 (2%)

Query: 35  YSVAEETESGSFVANLLKDLGLEIGELAVRGARVVSKGKKMHLQFDRQTGDLLLNEKLDR 94
           YSV+EET+ GSFV ++ KDLGLE  ELA RG R++S+G+      ++++G L+   ++DR
Sbjct: 33  YSVSEETDKGSFVGDIAKDLGLEPRELAERGVRIISRGRTQLFALNQRSGSLVTAGRIDR 92

Query: 95  EELCGPTEPCVLPFQVLLENPLQFFQAELRIRDVNDHSPVFLDKEILLKIPESITPGTTF 154
           EE+C  +  C++ F +L+E+ +  +  ++ I D+ND+ P FL +EI +KI E+  PG  F
Sbjct: 93  EEICAQSARCLVNFNILMEDKMNLYPIDVEIIDINDNVPRFLTEEINVKIMENTAPGVRF 152

Query: 155 LIERAQDLDVGTNSLQNYTISPNFHFHLNLQDSLDGIILPQLVLNRALDREEQPEIRLTL 214
            +  A D DVGTNSLQ+Y +SPN HF L +Q   D    P+LVL R LDREE+    L L
Sbjct: 153 PLSEAGDPDVGTNSLQSYQLSPNRHFSLAVQSGDDETKYPELVLERVLDREEERVHHLVL 212

Query: 215 TALDGGSPPRSGTALVRIEVVDINDNVPEFAKLLYEVQIPEDSPVGSQVAIVSARDLDIG 274
           TA DGG PPRS TA +++ VVD+ND+ P F+   Y+V +PE+ PVG+++  V A DLD G
Sbjct: 213 TASDGGDPPRSSTAHIQVTVVDVNDHTPVFSLPQYQVTVPENVPVGTRLLTVHAIDLDEG 272

Query: 275 TNGEISYAFSQASEDIRKTFRLSAKSGELLLRQKLDFESIQTYTVNIQATDGGGLSGTCV 334
            NGE++Y+F + +  + K F L++ +GE+   + LD+E    Y + +QA DG G      
Sbjct: 273 VNGEVTYSFRKITPKLPKMFHLNSLTGEISTLEGLDYEETAFYEMEVQAQDGPGSLTKAK 332

Query: 335 VFVQVMDLNDNPPELTMSTLINQIPENLQ-DTLIAVFSVSDPDSGDNGRMVCSIQDDLPF 393
           V + V+D+NDN PE+TM++L + IPE+    T+IA+F + D DSG NG + C+I ++LPF
Sbjct: 333 VLITVLDVNDNAPEVTMTSLSSSIPEDTPLGTVIALFYLQDRDSGKNGEVTCTIPENLPF 392

Query: 394 FLKPSVENFYTLVISTALDRETRSEYNITITVTDFGTPRLKTEHNITVLVSDVNDNAPAF 453
            L+ S++N+Y LV +  LDRET S YNIT+  TD GTP L  E +I + V+D NDN P F
Sbjct: 393 KLEKSIDNYYRLVTTKNLDRETLSLYNITLKATDGGTPPLSRETHIFMQVADTNDNPPTF 452

Query: 454 TQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVTYSLLPPQDPHLPLASLVSINADNG 513
             +SY++++ ENN     I  V+A D DS  NAQ+TYSL        P++S VSIN+D G
Sbjct: 453 PHSSYSVYIAENNPRGASIFLVTAQDHDSEDNAQITYSLAEDTIQGAPVSSYVSINSDTG 512

Query: 514 HLFALQSLDYEALQAFEFRVGAADRGSPALSSEALVRVLVLDANDNSPFVLYP-LQNGSA 572
            L+ALQS DYE L+  + RV A D G P LSS   + + VLD NDN P +LYP L    +
Sbjct: 513 VLYALQSFDYEQLRELQLRVTAHDSGDPPLSSNMSLSLFVLDQNDNPPEILYPALPTDGS 572

Query: 573 PCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATEPGLFGVWAHNGEVRTARLL 632
              EL PR+AEPGYLVTKVVAVD DSGQNAWLSY LLKA+EPGLF V  + GEVRTAR L
Sbjct: 573 TGMELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYLLLKASEPGLFAVGLYTGEVRTARAL 632

Query: 633 RERDAAKQRLVVLVKDNGEPPRSATATLHVLLVDGFSQPYLLLPEAAPAQAQADL-LTVY 691
            +RDA KQ LVV V+D+G+PP SAT TL V + D   +    L    P+    +  LT+Y
Sbjct: 633 LDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPEVLADLGSLEPSDGPYNYDLTLY 692

Query: 692 LVVALASVSSLFLFSVLLFVAVRLCR--RSR---AASVGRCSVPEGPFPGQMVDVSGTGT 746
           LVVA+A+VS +FL  VL+ +A+RL R  +SR   A+  G  +VP   F G    + G   
Sbjct: 693 LVVAVATVSCVFLAFVLVLLALRLRRWHKSRLLQASEGGLANVPTSHFVG----MDGVQA 748

Query: 747 LSQSYQYEVCLTGGSGTNEFKFLKPIIPNFVAQGAERVS-EANPSFRKSFEF 797
             Q+Y +EV LT  S  +   F +   PN+V     + S E N S   S +F
Sbjct: 749 FLQTYSHEVSLTADSRKSHLIFPQ---PNYVDMLISQESCEKNDSLLTSVDF 797


>gi|14196477 protocadherin gamma subfamily A, 7 isoform 2 precursor
           [Homo sapiens]
          Length = 817

 Score =  636 bits (1641), Expect = 0.0
 Identities = 358/772 (46%), Positives = 491/772 (63%), Gaps = 16/772 (2%)

Query: 35  YSVAEETESGSFVANLLKDLGLEIGELAVRGARVVSKGKKMHLQFDRQTGDLLLNEKLDR 94
           YSV+EET+ GSFV ++ KDLGLE  ELA RG R++S+G+      ++++G L+   ++DR
Sbjct: 33  YSVSEETDKGSFVGDIAKDLGLEPRELAERGVRIISRGRTQLFALNQRSGSLVTAGRIDR 92

Query: 95  EELCGPTEPCVLPFQVLLENPLQFFQAELRIRDVNDHSPVFLDKEILLKIPESITPGTTF 154
           EE+C  +  C++ F +L+E+ +  +  ++ I D+ND+ P FL +EI +KI E+  PG  F
Sbjct: 93  EEICAQSARCLVNFNILMEDKMNLYPIDVEIIDINDNVPRFLTEEINVKIMENTAPGVRF 152

Query: 155 LIERAQDLDVGTNSLQNYTISPNFHFHLNLQDSLDGIILPQLVLNRALDREEQPEIRLTL 214
            +  A D DVGTNSLQ+Y +SPN HF L +Q   D    P+LVL R LDREE+    L L
Sbjct: 153 PLSEAGDPDVGTNSLQSYQLSPNRHFSLAVQSGDDETKYPELVLERVLDREEERVHHLVL 212

Query: 215 TALDGGSPPRSGTALVRIEVVDINDNVPEFAKLLYEVQIPEDSPVGSQVAIVSARDLDIG 274
           TA DGG PPRS TA +++ VVD+ND+ P F+   Y+V +PE+ PVG+++  V A DLD G
Sbjct: 213 TASDGGDPPRSSTAHIQVTVVDVNDHTPVFSLPQYQVTVPENVPVGTRLLTVHAIDLDEG 272

Query: 275 TNGEISYAFSQASEDIRKTFRLSAKSGELLLRQKLDFESIQTYTVNIQATDGGGLSGTCV 334
            NGE++Y+F + +  + K F L++ +GE+   + LD+E    Y + +QA DG G      
Sbjct: 273 VNGEVTYSFRKITPKLPKMFHLNSLTGEISTLEGLDYEETAFYEMEVQAQDGPGSLTKAK 332

Query: 335 VFVQVMDLNDNPPELTMSTLINQIPENLQ-DTLIAVFSVSDPDSGDNGRMVCSIQDDLPF 393
           V + V+D+NDN PE+TM++L + IPE+    T+IA+F + D DSG NG + C+I ++LPF
Sbjct: 333 VLITVLDVNDNAPEVTMTSLSSSIPEDTPLGTVIALFYLQDRDSGKNGEVTCTIPENLPF 392

Query: 394 FLKPSVENFYTLVISTALDRETRSEYNITITVTDFGTPRLKTEHNITVLVSDVNDNAPAF 453
            L+ S++N+Y LV +  LDRET S YNIT+  TD GTP L  E +I + V+D NDN P F
Sbjct: 393 KLEKSIDNYYRLVTTKNLDRETLSLYNITLKATDGGTPPLSRETHIFMQVADTNDNPPTF 452

Query: 454 TQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVTYSLLPPQDPHLPLASLVSINADNG 513
             +SY++++ ENN     I  V+A D DS  NAQ+TYSL        P++S VSIN+D G
Sbjct: 453 PHSSYSVYIAENNPRGASIFLVTAQDHDSEDNAQITYSLAEDTIQGAPVSSYVSINSDTG 512

Query: 514 HLFALQSLDYEALQAFEFRVGAADRGSPALSSEALVRVLVLDANDNSPFVLYP-LQNGSA 572
            L+ALQS DYE L+  + RV A D G P LSS   + + VLD NDN P +LYP L    +
Sbjct: 513 VLYALQSFDYEQLRELQLRVTAHDSGDPPLSSNMSLSLFVLDQNDNPPEILYPALPTDGS 572

Query: 573 PCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATEPGLFGVWAHNGEVRTARLL 632
              EL PR+AEPGYLVTKVVAVD DSGQNAWLSY LLKA+EPGLF V  + GEVRTAR L
Sbjct: 573 TGMELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYLLLKASEPGLFAVGLYTGEVRTARAL 632

Query: 633 RERDAAKQRLVVLVKDNGEPPRSATATLHVLLVDGFSQPYLLLPEAAPAQAQADL-LTVY 691
            +RDA KQ LVV V+D+G+PP SAT TL V + D   +    L    P+    +  LT+Y
Sbjct: 633 LDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPEVLADLGSLEPSDGPYNYDLTLY 692

Query: 692 LVVALASVSSLFLFSVLLFVAVRLCR--RSR---AASVGRCSVPEGPFPGQMVDVSGTGT 746
           LVVA+A+VS +FL  VL+ +A+RL R  +SR   A+  G  +VP   F G    + G   
Sbjct: 693 LVVAVATVSCVFLAFVLVLLALRLRRWHKSRLLQASEGGLANVPTSHFVG----MDGVQA 748

Query: 747 LSQSYQYEVCLTGGSGTNEFKFLKPIIPNFVAQGAERVS-EANPSFRKSFEF 797
             Q+Y +EV LT  S  +   F +   PN+V     + S E N S   S +F
Sbjct: 749 FLQTYSHEVSLTADSRKSHLIFPQ---PNYVDMLISQESCEKNDSLLTSVDF 797


>gi|14196471 protocadherin gamma subfamily A, 5 isoform 2 precursor
           [Homo sapiens]
          Length = 813

 Score =  630 bits (1626), Expect = e-180
 Identities = 359/769 (46%), Positives = 488/769 (63%), Gaps = 19/769 (2%)

Query: 15  QVLIFFVLLGIAQASCQPR----HYSVAEETESGSFVANLLKDLGLEIGELAVRGARVVS 70
           ++L+ F+LLG     C+P      YS+ EE + GSFV N+ KDLGLE  ELA RG R+VS
Sbjct: 12  ELLLPFMLLGTL---CEPGSGQIRYSMPEELDKGSFVGNIAKDLGLEPQELAERGVRIVS 68

Query: 71  KGKKMHLQFDRQTGDLLLNEKLDREELCGPTEPCVLPFQVLLENPLQFFQAELRIRDVND 130
           +G+      + ++G L+   ++DREELC  +  CV+ F +L+EN ++ +  E+ I D+ND
Sbjct: 69  RGRTQLFALNPRSGSLVTAGRIDREELCAQSPLCVVNFNILVENKMKIYGVEVEIIDIND 128

Query: 131 HSPVFLDKEILLKIPESITPGTTFLIERAQDLDVGTNSLQNYTISPNFHFHLNLQDSLDG 190
           + P F D+E+ +K+ E+   GT  ++  A+D DVG NSL++Y +S N HF L++    DG
Sbjct: 129 NFPRFRDEELKVKVNENAAAGTRLVLPFARDADVGVNSLRSYQLSSNLHFSLDVVSGTDG 188

Query: 191 IILPQLVLNRALDREEQPEIRLTLTALDGGSPPRSGTALVRIEVVDINDNVPEFAKLLYE 250
              P+LVL + LDRE++    L LTALDGG P  SGT  +R+ V+D NDN P F    Y 
Sbjct: 189 QKYPELVLEQPLDREKETVHDLLLTALDGGDPVLSGTTHIRVTVLDANDNAPLFTPSEYS 248

Query: 251 VQIPEDSPVGSQVAIVSARDLDIGTNGEISYAFSQASEDIRKTFRLSAKSGELLLRQKLD 310
           V +PE+ PVG+++ +++A D D G NG+++Y+F    E I +TF+L +  GE+   Q LD
Sbjct: 249 VSVPENIPVGTRLLMLTATDPDEGINGKLTYSFRNEEEKISETFQLDSNLGEISTLQSLD 308

Query: 311 FESIQTYTVNIQATDGGGLSGTCVVFVQVMDLNDNPPELTMSTLINQIPEN-LQDTLIAV 369
           +E  + Y + + A DGG L  +  V V V D+NDN PE+ +++L + I E+ L  T+IA+
Sbjct: 309 YEESRFYLMEVVAQDGGALVASAKVVVTVQDVNDNAPEVILTSLTSSISEDCLPGTVIAL 368

Query: 370 FSVSDPDSGDNGRMVCSIQDDLPFFLKPSVENFYTLVISTALDRETRSEYNITITVTDFG 429
           FSV D DSG+NG + CSI  +LPF L+ SV+N+Y L+ +  LDRE  S+YNIT+TV D G
Sbjct: 369 FSVHDGDSGENGEIACSIPRNLPFKLEKSVDNYYHLLTTRDLDREETSDYNITLTVMDHG 428

Query: 430 TPRLKTEHNITVLVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVT 489
           TP L TE +I + V+DVNDN P F Q SY+  V ENN   + I SV+A D DSG NA+VT
Sbjct: 429 TPPLSTESHIPLKVADVNDNPPNFPQASYSTSVTENNPRGVSIFSVTAHDPDSGDNARVT 488

Query: 490 YSLLPPQDPHLPLASLVSINADNGHLFALQSLDYEALQAFEFRVGAADRGSPALSSEALV 549
           YSL        PL+S VSIN+D G L+AL+S DYE L+  +  V A+D G+P LSS   +
Sbjct: 489 YSLAEDTFQGAPLSSYVSINSDTGVLYALRSFDYEQLRDLQLWVTASDSGNPPLSSNVSL 548

Query: 550 RVLVLDANDNSPFVLYP-LQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQL 608
            + VLD NDN+P +LYP L    +   EL PR+AEPGYLVTKVVAVD DSGQNAWLSY+L
Sbjct: 549 SLFVLDQNDNTPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYRL 608

Query: 609 LKATEPGLFGVWAHNGEVRTARLLRERDAAKQRLVVLVKDNGEPPRSATATLHVLLVDGF 668
           LKA+EPGLF V  H GEVRTAR L +RDA KQ LVV V+D+G+PP SAT T+ V + D  
Sbjct: 609 LKASEPGLFAVGLHTGEVRTARALLDRDALKQSLVVAVEDHGQPPLSATFTVTVAVADRI 668

Query: 669 SQPYLLLPEAAPAQAQADL-LTVYLVVALASVSSLFLFSVLLFVAVRLCR--RSR---AA 722
                 L          DL LT+YLVVA+A+VS +FL  V++ + +RL R  +SR   A 
Sbjct: 669 PDILADLGSIKTPIDPEDLDLTLYLVVAVAAVSCVFLAFVIVLLVLRLRRWHKSRLLQAE 728

Query: 723 SVGRCSVPEGPFPGQMVDVSGTGTLSQSYQYEVCLTGGSGTNEFKFLKP 771
                 VP   F G    V G     Q+Y +EV LT  S  +   F +P
Sbjct: 729 GSRLAGVPASHFVG----VDGVRAFLQTYSHEVSLTADSRKSHLIFPQP 773


>gi|11056024 protocadherin gamma subfamily A, 5 isoform 1 precursor
           [Homo sapiens]
          Length = 931

 Score =  630 bits (1626), Expect = e-180
 Identities = 359/769 (46%), Positives = 488/769 (63%), Gaps = 19/769 (2%)

Query: 15  QVLIFFVLLGIAQASCQPR----HYSVAEETESGSFVANLLKDLGLEIGELAVRGARVVS 70
           ++L+ F+LLG     C+P      YS+ EE + GSFV N+ KDLGLE  ELA RG R+VS
Sbjct: 12  ELLLPFMLLGTL---CEPGSGQIRYSMPEELDKGSFVGNIAKDLGLEPQELAERGVRIVS 68

Query: 71  KGKKMHLQFDRQTGDLLLNEKLDREELCGPTEPCVLPFQVLLENPLQFFQAELRIRDVND 130
           +G+      + ++G L+   ++DREELC  +  CV+ F +L+EN ++ +  E+ I D+ND
Sbjct: 69  RGRTQLFALNPRSGSLVTAGRIDREELCAQSPLCVVNFNILVENKMKIYGVEVEIIDIND 128

Query: 131 HSPVFLDKEILLKIPESITPGTTFLIERAQDLDVGTNSLQNYTISPNFHFHLNLQDSLDG 190
           + P F D+E+ +K+ E+   GT  ++  A+D DVG NSL++Y +S N HF L++    DG
Sbjct: 129 NFPRFRDEELKVKVNENAAAGTRLVLPFARDADVGVNSLRSYQLSSNLHFSLDVVSGTDG 188

Query: 191 IILPQLVLNRALDREEQPEIRLTLTALDGGSPPRSGTALVRIEVVDINDNVPEFAKLLYE 250
              P+LVL + LDRE++    L LTALDGG P  SGT  +R+ V+D NDN P F    Y 
Sbjct: 189 QKYPELVLEQPLDREKETVHDLLLTALDGGDPVLSGTTHIRVTVLDANDNAPLFTPSEYS 248

Query: 251 VQIPEDSPVGSQVAIVSARDLDIGTNGEISYAFSQASEDIRKTFRLSAKSGELLLRQKLD 310
           V +PE+ PVG+++ +++A D D G NG+++Y+F    E I +TF+L +  GE+   Q LD
Sbjct: 249 VSVPENIPVGTRLLMLTATDPDEGINGKLTYSFRNEEEKISETFQLDSNLGEISTLQSLD 308

Query: 311 FESIQTYTVNIQATDGGGLSGTCVVFVQVMDLNDNPPELTMSTLINQIPEN-LQDTLIAV 369
           +E  + Y + + A DGG L  +  V V V D+NDN PE+ +++L + I E+ L  T+IA+
Sbjct: 309 YEESRFYLMEVVAQDGGALVASAKVVVTVQDVNDNAPEVILTSLTSSISEDCLPGTVIAL 368

Query: 370 FSVSDPDSGDNGRMVCSIQDDLPFFLKPSVENFYTLVISTALDRETRSEYNITITVTDFG 429
           FSV D DSG+NG + CSI  +LPF L+ SV+N+Y L+ +  LDRE  S+YNIT+TV D G
Sbjct: 369 FSVHDGDSGENGEIACSIPRNLPFKLEKSVDNYYHLLTTRDLDREETSDYNITLTVMDHG 428

Query: 430 TPRLKTEHNITVLVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVT 489
           TP L TE +I + V+DVNDN P F Q SY+  V ENN   + I SV+A D DSG NA+VT
Sbjct: 429 TPPLSTESHIPLKVADVNDNPPNFPQASYSTSVTENNPRGVSIFSVTAHDPDSGDNARVT 488

Query: 490 YSLLPPQDPHLPLASLVSINADNGHLFALQSLDYEALQAFEFRVGAADRGSPALSSEALV 549
           YSL        PL+S VSIN+D G L+AL+S DYE L+  +  V A+D G+P LSS   +
Sbjct: 489 YSLAEDTFQGAPLSSYVSINSDTGVLYALRSFDYEQLRDLQLWVTASDSGNPPLSSNVSL 548

Query: 550 RVLVLDANDNSPFVLYP-LQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQL 608
            + VLD NDN+P +LYP L    +   EL PR+AEPGYLVTKVVAVD DSGQNAWLSY+L
Sbjct: 549 SLFVLDQNDNTPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYRL 608

Query: 609 LKATEPGLFGVWAHNGEVRTARLLRERDAAKQRLVVLVKDNGEPPRSATATLHVLLVDGF 668
           LKA+EPGLF V  H GEVRTAR L +RDA KQ LVV V+D+G+PP SAT T+ V + D  
Sbjct: 609 LKASEPGLFAVGLHTGEVRTARALLDRDALKQSLVVAVEDHGQPPLSATFTVTVAVADRI 668

Query: 669 SQPYLLLPEAAPAQAQADL-LTVYLVVALASVSSLFLFSVLLFVAVRLCR--RSR---AA 722
                 L          DL LT+YLVVA+A+VS +FL  V++ + +RL R  +SR   A 
Sbjct: 669 PDILADLGSIKTPIDPEDLDLTLYLVVAVAAVSCVFLAFVIVLLVLRLRRWHKSRLLQAE 728

Query: 723 SVGRCSVPEGPFPGQMVDVSGTGTLSQSYQYEVCLTGGSGTNEFKFLKP 771
                 VP   F G    V G     Q+Y +EV LT  S  +   F +P
Sbjct: 729 GSRLAGVPASHFVG----VDGVRAFLQTYSHEVSLTADSRKSHLIFPQP 773


>gi|14270505 protocadherin gamma subfamily B, 5 isoform 2 precursor
           [Homo sapiens]
          Length = 818

 Score =  627 bits (1617), Expect = e-179
 Identities = 360/782 (46%), Positives = 483/782 (61%), Gaps = 30/782 (3%)

Query: 1   MEAGEGKERVPKQRQVLIFFVLLGIAQASCQPRHYSVAEETESGSFVANLLKDLGLEIGE 60
           M +G G+    ++  VL  F+L     A C+   Y + EE   GS V NL  DLG  + E
Sbjct: 1   MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE 60

Query: 61  LAVRGARVVSKGKKMHLQFDRQTGDLLLNEKLDREELCGPTEPCVLPFQVLLENPLQFFQ 120
           L  R  RV S+  K +     ++G+LL++ +LDREE+CG    C L F+ + ENPL F+ 
Sbjct: 61  LPTRKLRVSSE--KPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYH 118

Query: 121 AELRIRDVNDHSPVFLDKEILLKIPESITPGTTFLIERAQDLDVGTNSLQNYTISPNFHF 180
             + I D+NDH+P F      L+I ES  PGT F++E A+D D+G NSLQ Y +S N  F
Sbjct: 119 VNVEIEDINDHTPKFTQNSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSF 178

Query: 181 HLNLQDSLDGIILPQLVLNRALDREEQPEIRLTLTALDGGSPPRSGTALVRIEVVDINDN 240
            L +++  DG   P+L L + LDRE+Q   RL LTALDGG PP SGT  +RI+V D NDN
Sbjct: 179 SLIIKEKQDGSKYPELALEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDN 238

Query: 241 VPEFAKLLYEVQIPEDSPVGSQVAIVSARDLDIGTNGEISYAFSQASEDIRKTFRLSAKS 300
            P F + +Y V + E+ P G+ V  VSA D D G N EI+Y+F +  +     F L++KS
Sbjct: 239 PPVFNRDVYRVSLRENVPPGTTVLQVSATDQDEGINSEITYSFYRTGQ----IFSLNSKS 294

Query: 301 GELLLRQKLDFESIQTYTVNIQATDGGGLSGTCVVFVQVMDLNDNPPELTMSTLINQIPE 360
           GE+  ++KLDFE  + Y++ ++  DGGGL   C V + + D NDN PE+T  +L+  I E
Sbjct: 295 GEITTQKKLDFEETKEYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILE 354

Query: 361 N-LQDTLIAVFSVSDPDSGDNGRMVCSIQDDLPFFLKPSVENFYTLVISTALDRETRSEY 419
           N +  TLIA+  + D DSG+NG + C +Q ++PF +  S +N Y LV    LDRE   EY
Sbjct: 355 NAVPGTLIALIKIHDQDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEY 414

Query: 420 NITITVTDFGTPRLKTEHNITVLVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATD 479
           N+TIT TD G P L +  ++ + + DVNDNAP F Q SY + V ENN P   I  V A+D
Sbjct: 415 NVTITATDRGKPPLSSSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASD 474

Query: 480 RDSGTNAQVTYSLLPPQDPHLPLASLVSINADNGHLFALQSLDYEALQAFEFRVGAADRG 539
            D G N QV+YS++      L LAS VS++A +G +FA ++ DYE L+ FE  + A D+G
Sbjct: 475 LDLGLNGQVSYSIMASDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQG 534

Query: 540 SPALSSEALVRVLVLDANDNSPFVLYPL--QNGSAPCTELVPRAAEPGYLVTKVVAVDGD 597
           SPALS+   +RVLV D NDN+P VLYP    +GSA   ++VPRAAEPGYLVTKVVAVD D
Sbjct: 535 SPALSANVSLRVLVGDRNDNAPRVLYPALGPDGSA-LFDMVPRAAEPGYLVTKVVAVDAD 593

Query: 598 SGQNAWLSYQLLKATEPGLFGVWAHNGEVRTARLLRERDAAKQRLVVLVKDNGEPPRSAT 657
           SG NAWLSY +L+A+EPGLF +    GEVRTAR L +RDAA+QRL+V V+D G+PP SAT
Sbjct: 594 SGHNAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSAT 653

Query: 658 ATLHVLLVDGFSQPYLLLPE----AAPAQAQADLLTVYLVVALASVSSLFLFSVLLFVAV 713
           ATLH++  D   +   +LP+      P+  QA+ L  YLVVALA +S LFL +V+L VA+
Sbjct: 654 ATLHLVFADSLQE---VLPDITDRPVPSDPQAE-LQFYLVVALALISVLFLLAVILAVAL 709

Query: 714 RLCRRSRAASVGRCSVP-----EGPFPGQMVDVSGTGTLSQSYQYEVCLTGGSGTNEFKF 768
           RL RRS + +   C  P      GP    +      GTL   Y Y +C+   +G  EF F
Sbjct: 710 RL-RRSSSPAAWSCFQPGLCVKSGPV---VPPNYSQGTL--PYSYNLCV-AHTGKTEFNF 762

Query: 769 LK 770
           LK
Sbjct: 763 LK 764


>gi|11128043 protocadherin gamma subfamily A, 9 isoform 1 precursor
           [Homo sapiens]
          Length = 932

 Score =  627 bits (1617), Expect = e-179
 Identities = 356/768 (46%), Positives = 483/768 (62%), Gaps = 16/768 (2%)

Query: 14  RQVLIFFVLLGIAQASCQPRHYSVAEETESGSFVANLLKDLGLEIGELAVRGARVVSKGK 73
           R VL+  +L  + +A      YSV EETE G  V N+ KDL LE  ELA R  R+VS+G+
Sbjct: 12  RLVLLCSLLGMLWEARASQIRYSVPEETEKGYIVGNISKDLALEPRELAERRVRIVSRGR 71

Query: 74  KMHLQFDRQTGDLLLNEKLDREELCGPTEPCVLPFQVLLENPLQFFQAELRIRDVNDHSP 133
                 + ++G L+   ++DREELC  +  C++ F+VL+E+ ++ +  E+ + D+ND +P
Sbjct: 72  TQLFSLNPRSGTLVTAGRIDREELCAQSPRCLVNFKVLVEDRVKLYGIEIEVTDINDSAP 131

Query: 134 VFLDKEILLKIPESITPGTTFLIERAQDLDVGTNSLQNYTISPNFHFHLNLQDSLDGIIL 193
            F  + + +KI E   PG  + +  A D DVG NSLQ+Y +SPN HF LN+Q   +G I 
Sbjct: 132 KFQAESLEVKINEIAVPGARYPLPEAIDPDVGVNSLQSYQLSPNHHFSLNVQTGDNGAIN 191

Query: 194 PQLVLNRALDREEQPEIRLTLTALDGGSPPRSGTALVRIEVVDINDNVPEFAKLLYEVQI 253
           P+LVL RALDREE     L LTA DGG P RS T  + + V+D NDN P FA+ +Y V++
Sbjct: 192 PELVLERALDREEATAHHLVLTASDGGEPRRSSTVRIHVTVLDTNDNAPVFAQRIYRVKV 251

Query: 254 PEDSPVGSQVAIVSARDLDIGTNGEISYAFSQASEDIRKTFRLSAKSGELLLRQKLDFES 313
            E+ P G+ +   +A DLD G NG+++Y F + +E     F+L+  +GE+   + LD+E 
Sbjct: 252 LENVPPGTWLLTATASDLDEGINGKVAYKFWKINEKQSLLFQLNENTGEISTAKSLDYEE 311

Query: 314 IQTYTVNIQATDGGGLSGTCVVFVQVMDLNDNPPELTMSTLINQIPENL-QDTLIAVFSV 372
              Y + IQA DGGGL G   V + V D+NDN PE+T+++L + + E+  Q T+I +F+ 
Sbjct: 312 CSFYEMEIQAEDGGGLKGWTKVLISVEDVNDNRPEVTITSLFSPVREDAPQGTVILLFNA 371

Query: 373 SDPDSGDNGRMVCSIQDDLPFFLKPSVENFYTLVISTALDRETRSEYNITITVTDFGTPR 432
            D DSG NG++VCSIQ++L F L+ S E++Y L+ +  LDRE  SEYNIT+T TD GTP 
Sbjct: 372 HDRDSGKNGQVVCSIQENLSFTLENSEEDYYRLLTAQILDREKASEYNITVTATDRGTPP 431

Query: 433 LKTEHNITVLVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVTYSL 492
           L TE +IT+ V+D+NDN PAF+Q SY++++ ENN+    I SV A D DS  N++V YSL
Sbjct: 432 LSTEIHITLQVTDINDNPPAFSQASYSVYLPENNARGTSIFSVIAYDPDSNENSRVIYSL 491

Query: 493 LPPQDPHLPLASLVSINADNGHLFALQSLDYEALQAFEFRVGAADRGSPALSSEALVRVL 552
                   PL++ VSIN+D G L+AL S DYE  +  + +V A+D GSP LSS   +R+ 
Sbjct: 492 AEDTIQGSPLSTYVSINSDTGVLYALCSFDYEQFRDLQMQVTASDSGSPPLSSNVSLRLF 551

Query: 553 VLDANDNSPFVLYP-LQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKA 611
           VLD NDN+P +LYP L    +   EL PR+AEPGYLVTKVVAVD DSGQNAWLSY+L KA
Sbjct: 552 VLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLFKA 611

Query: 612 TEPGLFGVWAHNGEVRTARLLRERDAAKQRLVVLVKDNGEPPRSATATLHVLLVDGFSQP 671
           +EPGLF V  H GEVRTAR L +RDA KQ LVV V+D+G+PP SAT TL V + D  S P
Sbjct: 612 SEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAIAD--SIP 669

Query: 672 YLLLPEAA---PAQAQADLLTVYLVVALASVSSLFLFSVLLFVAVRL-----CRRSRAAS 723
            +L    +   PA  +A  LT+YLVVA+A VS +FL  V+  +A+RL         RA S
Sbjct: 670 DILADLGSLQIPADLEASDLTLYLVVAVAVVSCVFLTFVITLLALRLRHWHSSHLLRATS 729

Query: 724 VGRCSVPEGPFPGQMVDVSGTGTLSQSYQYEVCLTGGSGTNEFKFLKP 771
            G   VP   F G    V G     Q+Y  E  LT  S  +   F +P
Sbjct: 730 DGLAGVPTSHFVG----VDGVRAFLQTYSQEFSLTADSRKSHLIFPQP 773


>gi|11128031 protocadherin gamma subfamily B, 5 isoform 1 precursor
           [Homo sapiens]
          Length = 923

 Score =  627 bits (1617), Expect = e-179
 Identities = 360/782 (46%), Positives = 483/782 (61%), Gaps = 30/782 (3%)

Query: 1   MEAGEGKERVPKQRQVLIFFVLLGIAQASCQPRHYSVAEETESGSFVANLLKDLGLEIGE 60
           M +G G+    ++  VL  F+L     A C+   Y + EE   GS V NL  DLG  + E
Sbjct: 1   MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE 60

Query: 61  LAVRGARVVSKGKKMHLQFDRQTGDLLLNEKLDREELCGPTEPCVLPFQVLLENPLQFFQ 120
           L  R  RV S+  K +     ++G+LL++ +LDREE+CG    C L F+ + ENPL F+ 
Sbjct: 61  LPTRKLRVSSE--KPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYH 118

Query: 121 AELRIRDVNDHSPVFLDKEILLKIPESITPGTTFLIERAQDLDVGTNSLQNYTISPNFHF 180
             + I D+NDH+P F      L+I ES  PGT F++E A+D D+G NSLQ Y +S N  F
Sbjct: 119 VNVEIEDINDHTPKFTQNSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSF 178

Query: 181 HLNLQDSLDGIILPQLVLNRALDREEQPEIRLTLTALDGGSPPRSGTALVRIEVVDINDN 240
            L +++  DG   P+L L + LDRE+Q   RL LTALDGG PP SGT  +RI+V D NDN
Sbjct: 179 SLIIKEKQDGSKYPELALEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDN 238

Query: 241 VPEFAKLLYEVQIPEDSPVGSQVAIVSARDLDIGTNGEISYAFSQASEDIRKTFRLSAKS 300
            P F + +Y V + E+ P G+ V  VSA D D G N EI+Y+F +  +     F L++KS
Sbjct: 239 PPVFNRDVYRVSLRENVPPGTTVLQVSATDQDEGINSEITYSFYRTGQ----IFSLNSKS 294

Query: 301 GELLLRQKLDFESIQTYTVNIQATDGGGLSGTCVVFVQVMDLNDNPPELTMSTLINQIPE 360
           GE+  ++KLDFE  + Y++ ++  DGGGL   C V + + D NDN PE+T  +L+  I E
Sbjct: 295 GEITTQKKLDFEETKEYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILE 354

Query: 361 N-LQDTLIAVFSVSDPDSGDNGRMVCSIQDDLPFFLKPSVENFYTLVISTALDRETRSEY 419
           N +  TLIA+  + D DSG+NG + C +Q ++PF +  S +N Y LV    LDRE   EY
Sbjct: 355 NAVPGTLIALIKIHDQDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEY 414

Query: 420 NITITVTDFGTPRLKTEHNITVLVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATD 479
           N+TIT TD G P L +  ++ + + DVNDNAP F Q SY + V ENN P   I  V A+D
Sbjct: 415 NVTITATDRGKPPLSSSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASD 474

Query: 480 RDSGTNAQVTYSLLPPQDPHLPLASLVSINADNGHLFALQSLDYEALQAFEFRVGAADRG 539
            D G N QV+YS++      L LAS VS++A +G +FA ++ DYE L+ FE  + A D+G
Sbjct: 475 LDLGLNGQVSYSIMASDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQG 534

Query: 540 SPALSSEALVRVLVLDANDNSPFVLYPL--QNGSAPCTELVPRAAEPGYLVTKVVAVDGD 597
           SPALS+   +RVLV D NDN+P VLYP    +GSA   ++VPRAAEPGYLVTKVVAVD D
Sbjct: 535 SPALSANVSLRVLVGDRNDNAPRVLYPALGPDGSA-LFDMVPRAAEPGYLVTKVVAVDAD 593

Query: 598 SGQNAWLSYQLLKATEPGLFGVWAHNGEVRTARLLRERDAAKQRLVVLVKDNGEPPRSAT 657
           SG NAWLSY +L+A+EPGLF +    GEVRTAR L +RDAA+QRL+V V+D G+PP SAT
Sbjct: 594 SGHNAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSAT 653

Query: 658 ATLHVLLVDGFSQPYLLLPE----AAPAQAQADLLTVYLVVALASVSSLFLFSVLLFVAV 713
           ATLH++  D   +   +LP+      P+  QA+ L  YLVVALA +S LFL +V+L VA+
Sbjct: 654 ATLHLVFADSLQE---VLPDITDRPVPSDPQAE-LQFYLVVALALISVLFLLAVILAVAL 709

Query: 714 RLCRRSRAASVGRCSVP-----EGPFPGQMVDVSGTGTLSQSYQYEVCLTGGSGTNEFKF 768
           RL RRS + +   C  P      GP    +      GTL   Y Y +C+   +G  EF F
Sbjct: 710 RL-RRSSSPAAWSCFQPGLCVKSGPV---VPPNYSQGTL--PYSYNLCV-AHTGKTEFNF 762

Query: 769 LK 770
           LK
Sbjct: 763 LK 764


>gi|14270487 protocadherin gamma subfamily A, 9 isoform 2 precursor
           [Homo sapiens]
          Length = 828

 Score =  627 bits (1617), Expect = e-179
 Identities = 356/768 (46%), Positives = 483/768 (62%), Gaps = 16/768 (2%)

Query: 14  RQVLIFFVLLGIAQASCQPRHYSVAEETESGSFVANLLKDLGLEIGELAVRGARVVSKGK 73
           R VL+  +L  + +A      YSV EETE G  V N+ KDL LE  ELA R  R+VS+G+
Sbjct: 12  RLVLLCSLLGMLWEARASQIRYSVPEETEKGYIVGNISKDLALEPRELAERRVRIVSRGR 71

Query: 74  KMHLQFDRQTGDLLLNEKLDREELCGPTEPCVLPFQVLLENPLQFFQAELRIRDVNDHSP 133
                 + ++G L+   ++DREELC  +  C++ F+VL+E+ ++ +  E+ + D+ND +P
Sbjct: 72  TQLFSLNPRSGTLVTAGRIDREELCAQSPRCLVNFKVLVEDRVKLYGIEIEVTDINDSAP 131

Query: 134 VFLDKEILLKIPESITPGTTFLIERAQDLDVGTNSLQNYTISPNFHFHLNLQDSLDGIIL 193
            F  + + +KI E   PG  + +  A D DVG NSLQ+Y +SPN HF LN+Q   +G I 
Sbjct: 132 KFQAESLEVKINEIAVPGARYPLPEAIDPDVGVNSLQSYQLSPNHHFSLNVQTGDNGAIN 191

Query: 194 PQLVLNRALDREEQPEIRLTLTALDGGSPPRSGTALVRIEVVDINDNVPEFAKLLYEVQI 253
           P+LVL RALDREE     L LTA DGG P RS T  + + V+D NDN P FA+ +Y V++
Sbjct: 192 PELVLERALDREEATAHHLVLTASDGGEPRRSSTVRIHVTVLDTNDNAPVFAQRIYRVKV 251

Query: 254 PEDSPVGSQVAIVSARDLDIGTNGEISYAFSQASEDIRKTFRLSAKSGELLLRQKLDFES 313
            E+ P G+ +   +A DLD G NG+++Y F + +E     F+L+  +GE+   + LD+E 
Sbjct: 252 LENVPPGTWLLTATASDLDEGINGKVAYKFWKINEKQSLLFQLNENTGEISTAKSLDYEE 311

Query: 314 IQTYTVNIQATDGGGLSGTCVVFVQVMDLNDNPPELTMSTLINQIPENL-QDTLIAVFSV 372
              Y + IQA DGGGL G   V + V D+NDN PE+T+++L + + E+  Q T+I +F+ 
Sbjct: 312 CSFYEMEIQAEDGGGLKGWTKVLISVEDVNDNRPEVTITSLFSPVREDAPQGTVILLFNA 371

Query: 373 SDPDSGDNGRMVCSIQDDLPFFLKPSVENFYTLVISTALDRETRSEYNITITVTDFGTPR 432
            D DSG NG++VCSIQ++L F L+ S E++Y L+ +  LDRE  SEYNIT+T TD GTP 
Sbjct: 372 HDRDSGKNGQVVCSIQENLSFTLENSEEDYYRLLTAQILDREKASEYNITVTATDRGTPP 431

Query: 433 LKTEHNITVLVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVTYSL 492
           L TE +IT+ V+D+NDN PAF+Q SY++++ ENN+    I SV A D DS  N++V YSL
Sbjct: 432 LSTEIHITLQVTDINDNPPAFSQASYSVYLPENNARGTSIFSVIAYDPDSNENSRVIYSL 491

Query: 493 LPPQDPHLPLASLVSINADNGHLFALQSLDYEALQAFEFRVGAADRGSPALSSEALVRVL 552
                   PL++ VSIN+D G L+AL S DYE  +  + +V A+D GSP LSS   +R+ 
Sbjct: 492 AEDTIQGSPLSTYVSINSDTGVLYALCSFDYEQFRDLQMQVTASDSGSPPLSSNVSLRLF 551

Query: 553 VLDANDNSPFVLYP-LQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKA 611
           VLD NDN+P +LYP L    +   EL PR+AEPGYLVTKVVAVD DSGQNAWLSY+L KA
Sbjct: 552 VLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLFKA 611

Query: 612 TEPGLFGVWAHNGEVRTARLLRERDAAKQRLVVLVKDNGEPPRSATATLHVLLVDGFSQP 671
           +EPGLF V  H GEVRTAR L +RDA KQ LVV V+D+G+PP SAT TL V + D  S P
Sbjct: 612 SEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAIAD--SIP 669

Query: 672 YLLLPEAA---PAQAQADLLTVYLVVALASVSSLFLFSVLLFVAVRL-----CRRSRAAS 723
            +L    +   PA  +A  LT+YLVVA+A VS +FL  V+  +A+RL         RA S
Sbjct: 670 DILADLGSLQIPADLEASDLTLYLVVAVAVVSCVFLTFVITLLALRLRHWHSSHLLRATS 729

Query: 724 VGRCSVPEGPFPGQMVDVSGTGTLSQSYQYEVCLTGGSGTNEFKFLKP 771
            G   VP   F G    V G     Q+Y  E  LT  S  +   F +P
Sbjct: 730 DGLAGVPTSHFVG----VDGVRAFLQTYSQEFSLTADSRKSHLIFPQP 773


>gi|11128041 protocadherin gamma subfamily A, 10 isoform 1 precursor
           [Homo sapiens]
          Length = 936

 Score =  625 bits (1611), Expect = e-179
 Identities = 353/780 (45%), Positives = 482/780 (61%), Gaps = 12/780 (1%)

Query: 1   MEAGEGKERVPKQRQVLIFFVLL-GIA-QASCQPRHYSVAEETESGSFVANLLKDLGLEI 58
           M A   + +  K    L+   L  GI  +A  +   YS+ EE E GSFV N+ KDLGL  
Sbjct: 1   MAAQRNRSKESKDCSGLVLLCLFFGIPWEAGARQISYSIPEELEKGSFVGNISKDLGLAP 60

Query: 59  GELAVRGARVVSKGKKMHLQFDRQTGDLLLNEKLDREELCGPTEPCVLPFQVLLENPLQF 118
            ELA RG R+VS+G+      + ++G L+   ++DREELC  +  CV+ F +L+E+ ++ 
Sbjct: 61  RELAERGVRIVSRGRTQLFSLNPRSGSLITAGRIDREELCAQSARCVVSFNILVEDRVKL 120

Query: 119 FQAELRIRDVNDHSPVFLDKEILLKIPESITPGTTFLIERAQDLDVGTNSLQNYTISPNF 178
           F  E+ + D+ND++P F  + + +KI E++  G  F +  A D DVG NSLQ+Y +SPN 
Sbjct: 121 FGIEIEVTDINDNAPKFQAENLDVKINENVAAGMRFPLPEAIDPDVGVNSLQSYQLSPNK 180

Query: 179 HFHLNLQDSLDGIILPQLVLNRALDREEQPEIRLTLTALDGGSPPRSGTALVRIEVVDIN 238
           HF L +Q   +G+  P+LVL  +LDREE+    L LTA DGG P RSGT LV + V D N
Sbjct: 181 HFSLRVQSRANGVKYPELVLEHSLDREEEAIHHLVLTASDGGDPLRSGTVLVSVTVFDAN 240

Query: 239 DNVPEFAKLLYEVQIPEDSPVGSQVAIVSARDLDIGTNGEISYAFSQASEDIRKTFRLSA 298
           DN P F    Y V +PE+ PVG+Q+  V+A D D G NGE++Y+F +  +     F+L+ 
Sbjct: 241 DNAPVFTLPEYRVSVPENLPVGTQLLTVTATDRDEGANGEVTYSFRKLPDTQLLKFQLNK 300

Query: 299 KSGELLLRQKLDFESIQTYTVNIQATDGGGLSGTCVVFVQVMDLNDNPPELTMSTLINQI 358
            +GE+ + + LD+E    Y + IQA DGG    T  V + V D+NDN PELT+++L + +
Sbjct: 301 YTGEIKISENLDYEETGFYEIEIQAEDGGAYLATAKVLITVEDVNDNSPELTITSLFSPV 360

Query: 359 PENLQ-DTLIAVFSVSDPDSGDNGRMVCSIQDDLPFFLKPSVENFYTLVISTALDRETRS 417
            E+    T++A+ +V D DS  NG++ CSI   LPF L+ S++++Y LVI  ALDRE  S
Sbjct: 361 TEDSPLGTVVALLNVHDLDSEQNGQVTCSILAYLPFKLEKSIDSYYRLVIHRALDREQVS 420

Query: 418 EYNITITVTDFGTPRLKTEHNITVLVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSA 477
            YNIT+T TD G+P L TE +  + V+D+NDN P F+Q SY  ++ ENN+    I SV+A
Sbjct: 421 SYNITVTATDGGSPPLSTEAHFMLQVADINDNPPTFSQVSYFTYIPENNARGASIFSVTA 480

Query: 478 TDRDSGTNAQVTYSLLPPQDPHLPLASLVSINADNGHLFALQSLDYEALQAFEFRVGAAD 537
            D DS  NAQ+ YSL       +PL+S +SIN+D G L+AL+S DYE     + +V A+D
Sbjct: 481 LDPDSKENAQIIYSLAEDTIQGVPLSSYISINSDTGVLYALRSFDYEQFHELQMQVTASD 540

Query: 538 RGSPALSSEALVRVLVLDANDNSPFVLYP-LQNGSAPCTELVPRAAEPGYLVTKVVAVDG 596
            G P LSS   + + VLD NDN+P +LYP L    +   EL PR+AEPGYLVTKVVAVD 
Sbjct: 541 SGDPPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDR 600

Query: 597 DSGQNAWLSYQLLKATEPGLFGVWAHNGEVRTARLLRERDAAKQRLVVLVKDNGEPPRSA 656
           DSGQNAWLSY+LLKA+EPGLF V  H GEVRTAR L +RDA KQ LVV V+D+G+PP SA
Sbjct: 601 DSGQNAWLSYRLLKASEPGLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSA 660

Query: 657 TATLHVLLVDGFSQPYLLLPE-AAPAQAQADLLTVYLVVALASVSSLFLFSVLLFVAVRL 715
           T TL V + D   Q    L    +PA ++   LT+YLVVA+A+VS +FL  V++ +A RL
Sbjct: 661 TVTLTVAVADSIPQVLADLGSFESPANSETSDLTLYLVVAVAAVSCVFLAFVIVLLAHRL 720

Query: 716 CR----RSRAASVGRCSVPEGPFPGQMVDVSGTGTLSQSYQYEVCLTGGSGTNEFKFLKP 771
            R    R   AS G  +   G      V V G     Q+Y +EV LT  S  +   F +P
Sbjct: 721 RRWHKSRLLQASGGGLTGVSG---SHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFPQP 777


>gi|14196448 protocadherin gamma subfamily A, 10 isoform 2 precursor
           [Homo sapiens]
          Length = 850

 Score =  625 bits (1611), Expect = e-179
 Identities = 353/780 (45%), Positives = 482/780 (61%), Gaps = 12/780 (1%)

Query: 1   MEAGEGKERVPKQRQVLIFFVLL-GIA-QASCQPRHYSVAEETESGSFVANLLKDLGLEI 58
           M A   + +  K    L+   L  GI  +A  +   YS+ EE E GSFV N+ KDLGL  
Sbjct: 1   MAAQRNRSKESKDCSGLVLLCLFFGIPWEAGARQISYSIPEELEKGSFVGNISKDLGLAP 60

Query: 59  GELAVRGARVVSKGKKMHLQFDRQTGDLLLNEKLDREELCGPTEPCVLPFQVLLENPLQF 118
            ELA RG R+VS+G+      + ++G L+   ++DREELC  +  CV+ F +L+E+ ++ 
Sbjct: 61  RELAERGVRIVSRGRTQLFSLNPRSGSLITAGRIDREELCAQSARCVVSFNILVEDRVKL 120

Query: 119 FQAELRIRDVNDHSPVFLDKEILLKIPESITPGTTFLIERAQDLDVGTNSLQNYTISPNF 178
           F  E+ + D+ND++P F  + + +KI E++  G  F +  A D DVG NSLQ+Y +SPN 
Sbjct: 121 FGIEIEVTDINDNAPKFQAENLDVKINENVAAGMRFPLPEAIDPDVGVNSLQSYQLSPNK 180

Query: 179 HFHLNLQDSLDGIILPQLVLNRALDREEQPEIRLTLTALDGGSPPRSGTALVRIEVVDIN 238
           HF L +Q   +G+  P+LVL  +LDREE+    L LTA DGG P RSGT LV + V D N
Sbjct: 181 HFSLRVQSRANGVKYPELVLEHSLDREEEAIHHLVLTASDGGDPLRSGTVLVSVTVFDAN 240

Query: 239 DNVPEFAKLLYEVQIPEDSPVGSQVAIVSARDLDIGTNGEISYAFSQASEDIRKTFRLSA 298
           DN P F    Y V +PE+ PVG+Q+  V+A D D G NGE++Y+F +  +     F+L+ 
Sbjct: 241 DNAPVFTLPEYRVSVPENLPVGTQLLTVTATDRDEGANGEVTYSFRKLPDTQLLKFQLNK 300

Query: 299 KSGELLLRQKLDFESIQTYTVNIQATDGGGLSGTCVVFVQVMDLNDNPPELTMSTLINQI 358
            +GE+ + + LD+E    Y + IQA DGG    T  V + V D+NDN PELT+++L + +
Sbjct: 301 YTGEIKISENLDYEETGFYEIEIQAEDGGAYLATAKVLITVEDVNDNSPELTITSLFSPV 360

Query: 359 PENLQ-DTLIAVFSVSDPDSGDNGRMVCSIQDDLPFFLKPSVENFYTLVISTALDRETRS 417
            E+    T++A+ +V D DS  NG++ CSI   LPF L+ S++++Y LVI  ALDRE  S
Sbjct: 361 TEDSPLGTVVALLNVHDLDSEQNGQVTCSILAYLPFKLEKSIDSYYRLVIHRALDREQVS 420

Query: 418 EYNITITVTDFGTPRLKTEHNITVLVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSA 477
            YNIT+T TD G+P L TE +  + V+D+NDN P F+Q SY  ++ ENN+    I SV+A
Sbjct: 421 SYNITVTATDGGSPPLSTEAHFMLQVADINDNPPTFSQVSYFTYIPENNARGASIFSVTA 480

Query: 478 TDRDSGTNAQVTYSLLPPQDPHLPLASLVSINADNGHLFALQSLDYEALQAFEFRVGAAD 537
            D DS  NAQ+ YSL       +PL+S +SIN+D G L+AL+S DYE     + +V A+D
Sbjct: 481 LDPDSKENAQIIYSLAEDTIQGVPLSSYISINSDTGVLYALRSFDYEQFHELQMQVTASD 540

Query: 538 RGSPALSSEALVRVLVLDANDNSPFVLYP-LQNGSAPCTELVPRAAEPGYLVTKVVAVDG 596
            G P LSS   + + VLD NDN+P +LYP L    +   EL PR+AEPGYLVTKVVAVD 
Sbjct: 541 SGDPPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDR 600

Query: 597 DSGQNAWLSYQLLKATEPGLFGVWAHNGEVRTARLLRERDAAKQRLVVLVKDNGEPPRSA 656
           DSGQNAWLSY+LLKA+EPGLF V  H GEVRTAR L +RDA KQ LVV V+D+G+PP SA
Sbjct: 601 DSGQNAWLSYRLLKASEPGLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSA 660

Query: 657 TATLHVLLVDGFSQPYLLLPE-AAPAQAQADLLTVYLVVALASVSSLFLFSVLLFVAVRL 715
           T TL V + D   Q    L    +PA ++   LT+YLVVA+A+VS +FL  V++ +A RL
Sbjct: 661 TVTLTVAVADSIPQVLADLGSFESPANSETSDLTLYLVVAVAAVSCVFLAFVIVLLAHRL 720

Query: 716 CR----RSRAASVGRCSVPEGPFPGQMVDVSGTGTLSQSYQYEVCLTGGSGTNEFKFLKP 771
            R    R   AS G  +   G      V V G     Q+Y +EV LT  S  +   F +P
Sbjct: 721 RRWHKSRLLQASGGGLTGVSG---SHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFPQP 777


>gi|14196451 protocadherin gamma subfamily A, 11 isoform 2 precursor
           [Homo sapiens]
          Length = 837

 Score =  624 bits (1610), Expect = e-179
 Identities = 350/773 (45%), Positives = 484/773 (62%), Gaps = 13/773 (1%)

Query: 8   ERVPKQRQVLIFFVLLGIAQA-SCQPRHYSVAEETESGSFVANLLKDLGLEIGELAVRGA 66
           +R  + R +L+  + LG  +    +   YSV EETE GSFV N+ KDLGLE  ELA RG 
Sbjct: 6   QRGDRSRLLLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPRELAKRGV 65

Query: 67  RVVSKGKKMHLQFDRQTGDLLLNEKLDREELCGPTEPCVLPFQVLLENPLQFFQAELRIR 126
           R+VS+GK      + ++G L+   ++DREELC     C L  ++L+E+ L+ +  E+ I 
Sbjct: 66  RIVSRGKTQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGVEVEII 125

Query: 127 DVNDHSPVFLDKEILLKIPESITPGTTFLIERAQDLDVGTNSLQNYTISPNFHFHLNLQD 186
           D+ND++P F + E+ +K+ E   PG  F +  A+D DVG NSLQ+Y +SPN +F L L+ 
Sbjct: 126 DINDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFSLQLRG 185

Query: 187 SLDGIILPQLVLNRALDREEQPEIRLTLTALDGGSPPRSGTALVRIEVVDINDNVPEFAK 246
             DG   P+LVL  +LDRE++    L LTALDGG P R G   +R+ V+D+ND++P F +
Sbjct: 186 RTDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHIPMFTQ 245

Query: 247 LLYEVQIPEDSPVGSQVAIVSARDLDIGTNGEISYAFSQASEDIRKTFRLSAKSGELLLR 306
            +Y V +PE+   G++V +V+A D D G NGE+ Y+F        + F+L +++GE+ +R
Sbjct: 246 SVYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTGEVQVR 305

Query: 307 QKLDFESIQTYTVNIQATDGGGLSGTCVVFVQVMDLNDNPPELTMSTLINQIPENL-QDT 365
             LDFE  + Y + IQ  DGGGL  T  + + V+D+NDN PE+T+++ IN I EN    T
Sbjct: 306 GSLDFEKYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILENSPPGT 365

Query: 366 LIAVFSVSDPDSGDNGRMVCSIQDDLPFFLKPSVENFYTLVISTALDRETRSEYNITITV 425
           +IA+ +V D DSG+NG++ C I + LPF L+ +  N+Y L+ S  LDRE    YNIT+T 
Sbjct: 366 VIALLNVQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYNITLTA 425

Query: 426 TDFGTPRLKTEHNITVLVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTN 485
           TD G+P L  E ++ + V+D NDN P F  +SY+ ++ ENN     I SV+A D DS  N
Sbjct: 426 TDQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDPDSKQN 485

Query: 486 AQVTYSLLPPQDPHLPLASLVSINADNGHLFALQSLDYEALQAFEFRVGAADRGSPALSS 545
           A VTYSL       +PL+S VSIN++ G L+ALQS DYE  +  E RV A D G P LSS
Sbjct: 486 ALVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGDPPLSS 545

Query: 546 EALVRVLVLDANDNSPFVLYP-LQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWL 604
              + + VLD NDN+P +LYP L    +   EL PR+AEPGYLVTKVVAVD DSGQNAWL
Sbjct: 546 NVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWL 605

Query: 605 SYQLLKATEPGLFGVWAHNGEVRTARLLRERDAAKQRLVVLVKDNGEPPRSATATLHVLL 664
           SY+LLKA+EPGLF V  H GEVRTAR L +RDA KQ LVV V+D+G+PP SAT TL V +
Sbjct: 606 SYRLLKASEPGLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAV 665

Query: 665 VDGFSQPYLLLPE-AAPAQAQADLLTVYLVVALASVSSLFLFSVLLFVAVRLCR--RSR- 720
            D   +    L    + A ++   L++YLVVA+A+VS +FL  V++ +A+RL R  +SR 
Sbjct: 666 ADSIPEVLADLGSLESLANSETSDLSLYLVVAVAAVSCIFLVFVIVLLALRLWRWHKSRL 725

Query: 721 --AASVGRCSVPEGPFPGQMVDVSGTGTLSQSYQYEVCLTGGSGTNEFKFLKP 771
             A+  G   +P   F G    V G     Q+Y +EV L   S  +   F +P
Sbjct: 726 LQASEGGLAGMPTSHFVG----VDGVQAFLQTYSHEVSLIADSQKSHLIFPQP 774


>gi|11128039 protocadherin gamma subfamily A, 11 isoform 1 precursor
           [Homo sapiens]
          Length = 935

 Score =  624 bits (1610), Expect = e-179
 Identities = 350/773 (45%), Positives = 484/773 (62%), Gaps = 13/773 (1%)

Query: 8   ERVPKQRQVLIFFVLLGIAQA-SCQPRHYSVAEETESGSFVANLLKDLGLEIGELAVRGA 66
           +R  + R +L+  + LG  +    +   YSV EETE GSFV N+ KDLGLE  ELA RG 
Sbjct: 6   QRGDRSRLLLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPRELAKRGV 65

Query: 67  RVVSKGKKMHLQFDRQTGDLLLNEKLDREELCGPTEPCVLPFQVLLENPLQFFQAELRIR 126
           R+VS+GK      + ++G L+   ++DREELC     C L  ++L+E+ L+ +  E+ I 
Sbjct: 66  RIVSRGKTQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGVEVEII 125

Query: 127 DVNDHSPVFLDKEILLKIPESITPGTTFLIERAQDLDVGTNSLQNYTISPNFHFHLNLQD 186
           D+ND++P F + E+ +K+ E   PG  F +  A+D DVG NSLQ+Y +SPN +F L L+ 
Sbjct: 126 DINDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFSLQLRG 185

Query: 187 SLDGIILPQLVLNRALDREEQPEIRLTLTALDGGSPPRSGTALVRIEVVDINDNVPEFAK 246
             DG   P+LVL  +LDRE++    L LTALDGG P R G   +R+ V+D+ND++P F +
Sbjct: 186 RTDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHIPMFTQ 245

Query: 247 LLYEVQIPEDSPVGSQVAIVSARDLDIGTNGEISYAFSQASEDIRKTFRLSAKSGELLLR 306
            +Y V +PE+   G++V +V+A D D G NGE+ Y+F        + F+L +++GE+ +R
Sbjct: 246 SVYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTGEVQVR 305

Query: 307 QKLDFESIQTYTVNIQATDGGGLSGTCVVFVQVMDLNDNPPELTMSTLINQIPENL-QDT 365
             LDFE  + Y + IQ  DGGGL  T  + + V+D+NDN PE+T+++ IN I EN    T
Sbjct: 306 GSLDFEKYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILENSPPGT 365

Query: 366 LIAVFSVSDPDSGDNGRMVCSIQDDLPFFLKPSVENFYTLVISTALDRETRSEYNITITV 425
           +IA+ +V D DSG+NG++ C I + LPF L+ +  N+Y L+ S  LDRE    YNIT+T 
Sbjct: 366 VIALLNVQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYNITLTA 425

Query: 426 TDFGTPRLKTEHNITVLVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTN 485
           TD G+P L  E ++ + V+D NDN P F  +SY+ ++ ENN     I SV+A D DS  N
Sbjct: 426 TDQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDPDSKQN 485

Query: 486 AQVTYSLLPPQDPHLPLASLVSINADNGHLFALQSLDYEALQAFEFRVGAADRGSPALSS 545
           A VTYSL       +PL+S VSIN++ G L+ALQS DYE  +  E RV A D G P LSS
Sbjct: 486 ALVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGDPPLSS 545

Query: 546 EALVRVLVLDANDNSPFVLYP-LQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWL 604
              + + VLD NDN+P +LYP L    +   EL PR+AEPGYLVTKVVAVD DSGQNAWL
Sbjct: 546 NVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWL 605

Query: 605 SYQLLKATEPGLFGVWAHNGEVRTARLLRERDAAKQRLVVLVKDNGEPPRSATATLHVLL 664
           SY+LLKA+EPGLF V  H GEVRTAR L +RDA KQ LVV V+D+G+PP SAT TL V +
Sbjct: 606 SYRLLKASEPGLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAV 665

Query: 665 VDGFSQPYLLLPE-AAPAQAQADLLTVYLVVALASVSSLFLFSVLLFVAVRLCR--RSR- 720
            D   +    L    + A ++   L++YLVVA+A+VS +FL  V++ +A+RL R  +SR 
Sbjct: 666 ADSIPEVLADLGSLESLANSETSDLSLYLVVAVAAVSCIFLVFVIVLLALRLWRWHKSRL 725

Query: 721 --AASVGRCSVPEGPFPGQMVDVSGTGTLSQSYQYEVCLTGGSGTNEFKFLKP 771
             A+  G   +P   F G    V G     Q+Y +EV L   S  +   F +P
Sbjct: 726 LQASEGGLAGMPTSHFVG----VDGVQAFLQTYSHEVSLIADSQKSHLIFPQP 774


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.135    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,116,556
Number of Sequences: 37866
Number of extensions: 1360190
Number of successful extensions: 10158
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 2980
Number of HSP's gapped (non-prelim): 662
length of query: 798
length of database: 18,247,518
effective HSP length: 110
effective length of query: 688
effective length of database: 14,082,258
effective search space: 9688593504
effective search space used: 9688593504
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.

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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.