Guide to the Human Genome
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Name: PCDHGA5 Sequence: fasta or formatted (931aa) NCBI GI: 11056024
Description:

protocadherin gamma subfamily A, 5 isoform 1 precursor

Referenced in:

Cadherins and Related Proteins

Other entries for this name:
alt prot [813aa] protocadherin gamma subfamily A, 5 isoform 2 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.5         70           3
 C cysteine            0.9          8           1
 D aspartate           7.2         67           2
 E glutamate           6.3         59           3
 F phenylalanine       3.1         29           1
 G glycine             7.3         68           3
 H histidine           1.6         15           1
 I isoleucine          3.4         32           2
 K lysine              3.5         33           3
 L leucine            11.5        107           3
 M methionine          1.2         11           1
 N asparagine          4.9         46           2
 P proline             6.0         56           2
 Q glutamine           3.4         32           2
 R arginine            4.9         46           2
 S serine              9.0         84           2
 T threonine           6.3         59           2
 V valine              8.4         78           3
 W tryptophan          0.6          6           1
 Y tyrosine            2.7         25           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   protocadherin gamma subfamily A, 5 isoform 1 precurs... 
PCDHGA5               0.860   protocadherin gamma subfamily A, 5 isoform 2 precurs...
PCDHGA4               0.754   protocadherin gamma subfamily A, 4 isoform 1 precurs...
PCDHGA6               0.750   protocadherin gamma subfamily A, 6 isoform 1 precurs...
PCDHGA3               0.749   protocadherin gamma subfamily A, 3 isoform 1 precurs...
PCDHGA1               0.749   protocadherin gamma subfamily A, 1 isoform 1 precurs...
PCDHGA2               0.748   protocadherin gamma subfamily A, 2 isoform 1 precurs...
PCDHGA7               0.745   protocadherin gamma subfamily A, 7 isoform 1 precurs...
PCDHGA10              0.745   protocadherin gamma subfamily A, 10 isoform 1 precur...
PCDHGA8               0.744   protocadherin gamma subfamily A, 8 isoform 1 precurs...
PCDHGA12              0.740   protocadherin gamma subfamily A, 12 isoform 1 precurs...
PCDHGA11              0.731   protocadherin gamma subfamily A, 11 isoform 1 precur...
PCDHGA9               0.725   protocadherin gamma subfamily A, 9 isoform 1 precurs...
PCDHGA4               0.614   protocadherin gamma subfamily A, 4 isoform 2 precurs...
PCDHGA6               0.611   protocadherin gamma subfamily A, 6 isoform 2 precurs...
PCDHGA3               0.610   protocadherin gamma subfamily A, 3 isoform 2 precurs...
PCDHGA1               0.609   protocadherin gamma subfamily A, 1 isoform 2 precurs...
PCDHGA2               0.608   protocadherin gamma subfamily A, 2 isoform 2 precurs...
PCDHGA10              0.607   protocadherin gamma subfamily A, 10 isoform 2 precur...
PCDHGA7               0.607   protocadherin gamma subfamily A, 7 isoform 2 precurs...
PCDHGA8               0.606   protocadherin gamma subfamily A, 8 isoform 2 precurso...
PCDHGA12              0.600   protocadherin gamma subfamily A, 12 isoform 2 precur...
PCDHGA11              0.597   protocadherin gamma subfamily A, 11 isoform 2 precur...
PCDHGA9               0.588   protocadherin gamma subfamily A, 9 isoform 2 precurs...
PCDHGB5               0.504   protocadherin gamma subfamily B, 5 isoform 1 precurs...
PCDHGB7               0.498   protocadherin gamma subfamily B, 7 isoform 1 precurs...
PCDHGB1               0.496   protocadherin gamma subfamily B, 1 isoform 1 precurs...
PCDHGB2               0.493   protocadherin gamma subfamily B, 2 isoform 1 precurs...
PCDHGB6               0.491   protocadherin gamma subfamily B, 6 isoform 1 precurs...
PCDHGB4               0.491   protocadherin gamma subfamily B, 4 isoform 1 precurs...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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