Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 89993692
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|89993692 mouse double minute 2 homolog isoform MDM2b [Homo
sapiens]
(111 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|89993692 mouse double minute 2 homolog isoform MDM2b [Homo sa... 223 2e-59
gi|223890205 mouse double minute 2 homolog isoform MDM2h [Homo s... 178 9e-46
gi|89993691 mouse double minute 2 homolog isoform MDM2e [Homo sa... 178 9e-46
gi|89993693 mouse double minute 2 homolog isoform MDM2d [Homo sa... 178 9e-46
gi|89993690 mouse double minute 2 homolog isoform MDM2a [Homo sa... 178 9e-46
gi|89993689 mouse double minute 2 homolog isoform MDM2 [Homo sap... 178 9e-46
gi|223890201 mouse double minute 2 homolog isoform MDM2g [Homo s... 167 2e-42
gi|223890197 mouse double minute 2 homolog isoform MDM2f [Homo s... 117 2e-27
gi|223890207 mouse double minute 2 homolog isoform MDM2i [Homo s... 105 6e-24
gi|88702791 mouse double minute 4 homolog [Homo sapiens] 73 4e-14
gi|148539848 desmocollin 3 isoform Dsc3b preproprotein [Homo sap... 31 0.24
gi|148539846 desmocollin 3 isoform Dsc3a preproprotein [Homo sap... 31 0.24
gi|54112382 F-box and leucine-rich repeat protein 10 isoform a [... 28 2.1
gi|54112380 F-box and leucine-rich repeat protein 10 isoform b [... 28 2.1
gi|27436910 partner and localizer of BRCA2 [Homo sapiens] 27 2.7
gi|28144897 adenylate kinase 5 isoform 1 [Homo sapiens] 27 4.6
gi|28144899 adenylate kinase 5 isoform 2 [Homo sapiens] 27 4.6
gi|160420295 hypothetical protein LOC85459 [Homo sapiens] 27 4.6
gi|55769548 PHD finger protein 14 isoform 2 [Homo sapiens] 26 6.0
gi|55769550 PHD finger protein 14 isoform 1 [Homo sapiens] 26 6.0
>gi|89993692 mouse double minute 2 homolog isoform MDM2b [Homo
sapiens]
Length = 111
Score = 223 bits (569), Expect = 2e-59
Identities = 111/111 (100%), Positives = 111/111 (100%)
Query: 1 MVRSRQMCNTNMSVPTDGAVTTSQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVL 60
MVRSRQMCNTNMSVPTDGAVTTSQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVL
Sbjct: 1 MVRSRQMCNTNMSVPTDGAVTTSQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVL 60
Query: 61 FYLGQYIMTKRLYDEKQQHIVYCSNDCANLFPLVDLSIRELYISNYITLGI 111
FYLGQYIMTKRLYDEKQQHIVYCSNDCANLFPLVDLSIRELYISNYITLGI
Sbjct: 61 FYLGQYIMTKRLYDEKQQHIVYCSNDCANLFPLVDLSIRELYISNYITLGI 111
>gi|223890205 mouse double minute 2 homolog isoform MDM2h [Homo
sapiens]
Length = 442
Score = 178 bits (451), Expect = 9e-46
Identities = 90/101 (89%), Positives = 94/101 (93%), Gaps = 1/101 (0%)
Query: 1 MVRSRQMCNTNMSVPTDGAVTTSQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVL 60
MVRSRQMCNTNMSVPTDGAVTTSQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVL
Sbjct: 1 MVRSRQMCNTNMSVPTDGAVTTSQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVL 60
Query: 61 FYLGQYIMTKRLYDEKQQHIVYCSND-CANLFPLVDLSIRE 100
FYLGQYIMTKRLYDEKQQHIVYCSND +LF + S++E
Sbjct: 61 FYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKE 101
>gi|89993691 mouse double minute 2 homolog isoform MDM2e [Homo
sapiens]
Length = 179
Score = 178 bits (451), Expect = 9e-46
Identities = 90/101 (89%), Positives = 94/101 (93%), Gaps = 1/101 (0%)
Query: 1 MVRSRQMCNTNMSVPTDGAVTTSQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVL 60
MVRSRQMCNTNMSVPTDGAVTTSQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVL
Sbjct: 1 MVRSRQMCNTNMSVPTDGAVTTSQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVL 60
Query: 61 FYLGQYIMTKRLYDEKQQHIVYCSND-CANLFPLVDLSIRE 100
FYLGQYIMTKRLYDEKQQHIVYCSND +LF + S++E
Sbjct: 61 FYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKE 101
>gi|89993693 mouse double minute 2 homolog isoform MDM2d [Homo
sapiens]
Length = 172
Score = 178 bits (451), Expect = 9e-46
Identities = 90/101 (89%), Positives = 94/101 (93%), Gaps = 1/101 (0%)
Query: 1 MVRSRQMCNTNMSVPTDGAVTTSQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVL 60
MVRSRQMCNTNMSVPTDGAVTTSQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVL
Sbjct: 1 MVRSRQMCNTNMSVPTDGAVTTSQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVL 60
Query: 61 FYLGQYIMTKRLYDEKQQHIVYCSND-CANLFPLVDLSIRE 100
FYLGQYIMTKRLYDEKQQHIVYCSND +LF + S++E
Sbjct: 61 FYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKE 101
>gi|89993690 mouse double minute 2 homolog isoform MDM2a [Homo
sapiens]
Length = 249
Score = 178 bits (451), Expect = 9e-46
Identities = 90/101 (89%), Positives = 94/101 (93%), Gaps = 1/101 (0%)
Query: 1 MVRSRQMCNTNMSVPTDGAVTTSQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVL 60
MVRSRQMCNTNMSVPTDGAVTTSQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVL
Sbjct: 1 MVRSRQMCNTNMSVPTDGAVTTSQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVL 60
Query: 61 FYLGQYIMTKRLYDEKQQHIVYCSND-CANLFPLVDLSIRE 100
FYLGQYIMTKRLYDEKQQHIVYCSND +LF + S++E
Sbjct: 61 FYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKE 101
>gi|89993689 mouse double minute 2 homolog isoform MDM2 [Homo
sapiens]
Length = 497
Score = 178 bits (451), Expect = 9e-46
Identities = 90/101 (89%), Positives = 94/101 (93%), Gaps = 1/101 (0%)
Query: 1 MVRSRQMCNTNMSVPTDGAVTTSQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVL 60
MVRSRQMCNTNMSVPTDGAVTTSQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVL
Sbjct: 1 MVRSRQMCNTNMSVPTDGAVTTSQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVL 60
Query: 61 FYLGQYIMTKRLYDEKQQHIVYCSND-CANLFPLVDLSIRE 100
FYLGQYIMTKRLYDEKQQHIVYCSND +LF + S++E
Sbjct: 61 FYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKE 101
>gi|223890201 mouse double minute 2 homolog isoform MDM2g [Homo
sapiens]
Length = 444
Score = 167 bits (423), Expect = 2e-42
Identities = 84/95 (88%), Positives = 88/95 (92%), Gaps = 1/95 (1%)
Query: 7 MCNTNMSVPTDGAVTTSQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQY 66
MCNTNMSVPTDGAVTTSQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQY
Sbjct: 1 MCNTNMSVPTDGAVTTSQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQY 60
Query: 67 IMTKRLYDEKQQHIVYCSND-CANLFPLVDLSIRE 100
IMTKRLYDEKQQHIVYCSND +LF + S++E
Sbjct: 61 IMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKE 95
>gi|223890197 mouse double minute 2 homolog isoform MDM2f [Homo
sapiens]
Length = 452
Score = 117 bits (293), Expect = 2e-27
Identities = 58/61 (95%), Positives = 60/61 (98%)
Query: 1 MVRSRQMCNTNMSVPTDGAVTTSQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVL 60
MVRSRQMCNTNMSVPTDGAVTTSQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKE +
Sbjct: 1 MVRSRQMCNTNMSVPTDGAVTTSQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEKI 60
Query: 61 F 61
+
Sbjct: 61 Y 61
>gi|223890207 mouse double minute 2 homolog isoform MDM2i [Homo
sapiens]
Length = 295
Score = 105 bits (263), Expect = 6e-24
Identities = 53/54 (98%), Positives = 53/54 (98%)
Query: 7 MCNTNMSVPTDGAVTTSQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVL 60
MCNTNMSVPTDGAVTTSQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKE L
Sbjct: 1 MCNTNMSVPTDGAVTTSQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEDL 54
>gi|88702791 mouse double minute 4 homolog [Homo sapiens]
Length = 490
Score = 73.2 bits (178), Expect = 4e-14
Identities = 32/53 (60%), Positives = 43/53 (81%)
Query: 34 VRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSND 86
VRPK LLK+L + GAQ + +T+KEV+ YLGQYIM K+LYD+++QH+VYC D
Sbjct: 27 VRPKLPLLKILHAAGAQGEMFTVKEVMHYLGQYIMVKQLYDQQEQHMVYCGGD 79
>gi|148539848 desmocollin 3 isoform Dsc3b preproprotein [Homo
sapiens]
Length = 839
Score = 30.8 bits (68), Expect = 0.24
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 10/67 (14%)
Query: 25 IPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCS 84
IP S QE + P PL L+ ++S AQ Y Y ++ R D++ ++ Y
Sbjct: 140 IPCSMQENSLGPFPLFLQQVESDAAQN----------YTVFYSISGRGVDKEPLNLFYIE 189
Query: 85 NDCANLF 91
D NLF
Sbjct: 190 RDTGNLF 196
>gi|148539846 desmocollin 3 isoform Dsc3a preproprotein [Homo
sapiens]
Length = 896
Score = 30.8 bits (68), Expect = 0.24
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 10/67 (14%)
Query: 25 IPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCS 84
IP S QE + P PL L+ ++S AQ Y Y ++ R D++ ++ Y
Sbjct: 140 IPCSMQENSLGPFPLFLQQVESDAAQN----------YTVFYSISGRGVDKEPLNLFYIE 189
Query: 85 NDCANLF 91
D NLF
Sbjct: 190 RDTGNLF 196
>gi|54112382 F-box and leucine-rich repeat protein 10 isoform a
[Homo sapiens]
Length = 1336
Score = 27.7 bits (60), Expect = 2.1
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 15 PTDGAVTTSQIPASEQETL-VRPKPLLLKLLKSVGAQKDTYTMK 57
PTDG+ + + P+ +QE L +PK L+ LK + + ++K
Sbjct: 439 PTDGSTSPTSTPSEDQEALGKKPKAPALRFLKRTLSNESEESVK 482
>gi|54112380 F-box and leucine-rich repeat protein 10 isoform b
[Homo sapiens]
Length = 1265
Score = 27.7 bits (60), Expect = 2.1
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 15 PTDGAVTTSQIPASEQETL-VRPKPLLLKLLKSVGAQKDTYTMK 57
PTDG+ + + P+ +QE L +PK L+ LK + + ++K
Sbjct: 408 PTDGSTSPTSTPSEDQEALGKKPKAPALRFLKRTLSNESEESVK 451
>gi|27436910 partner and localizer of BRCA2 [Homo sapiens]
Length = 1186
Score = 27.3 bits (59), Expect = 2.7
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 29 EQETLVRPKPLLLKLLKSVGAQKDTYTMKE-VLFYLGQYIMTKRLYDEKQQHI 80
E E L +PK L L+ + A+K + T+ E +LF Y+ T R Q+ +
Sbjct: 371 ESEILSQPKSLSLEATSPLSAEKHSCTVPEGLLFPAEYYVRTTRSMSNCQRKV 423
>gi|28144897 adenylate kinase 5 isoform 1 [Homo sapiens]
Length = 562
Score = 26.6 bits (57), Expect = 4.6
Identities = 18/61 (29%), Positives = 28/61 (45%)
Query: 16 TDGAVTTSQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDE 75
TD + T I E RP+P ++ ++ G+ K T ++K Y QYI L +
Sbjct: 110 TDLSETAELIEEYEVFDPTRPRPKIILVIGGPGSGKGTQSLKIAERYGFQYISVGELLRK 169
Query: 76 K 76
K
Sbjct: 170 K 170
>gi|28144899 adenylate kinase 5 isoform 2 [Homo sapiens]
Length = 536
Score = 26.6 bits (57), Expect = 4.6
Identities = 18/61 (29%), Positives = 28/61 (45%)
Query: 16 TDGAVTTSQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDE 75
TD + T I E RP+P ++ ++ G+ K T ++K Y QYI L +
Sbjct: 84 TDLSETAELIEEYEVFDPTRPRPKIILVIGGPGSGKGTQSLKIAERYGFQYISVGELLRK 143
Query: 76 K 76
K
Sbjct: 144 K 144
>gi|160420295 hypothetical protein LOC85459 [Homo sapiens]
Length = 2601
Score = 26.6 bits (57), Expect = 4.6
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 11/58 (18%)
Query: 2 VRSRQMCNTNMSVPTDGAVTTSQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEV 59
V ++C++ VP + T QIP+ K L KLL + +QK +T+K +
Sbjct: 360 VTEAEICSSETDVPL--VMKTQQIPS---------KVLFKKLLNKIRSQKSLWTIKSM 406
>gi|55769548 PHD finger protein 14 isoform 2 [Homo sapiens]
Length = 888
Score = 26.2 bits (56), Expect = 6.0
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 9 NTNMSVPTDGAVTTSQIPASEQETLVRPKPLL 40
NT+ SVPT T Q+ ++ L R +PLL
Sbjct: 161 NTSPSVPTTTTATEEQVSEPKKWNLRRNRPLL 192
>gi|55769550 PHD finger protein 14 isoform 1 [Homo sapiens]
Length = 948
Score = 26.2 bits (56), Expect = 6.0
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 9 NTNMSVPTDGAVTTSQIPASEQETLVRPKPLL 40
NT+ SVPT T Q+ ++ L R +PLL
Sbjct: 161 NTSPSVPTTTTATEEQVSEPKKWNLRRNRPLL 192
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.134 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,771,214
Number of Sequences: 37866
Number of extensions: 137877
Number of successful extensions: 339
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 324
Number of HSP's gapped (non-prelim): 20
length of query: 111
length of database: 18,247,518
effective HSP length: 81
effective length of query: 30
effective length of database: 15,180,372
effective search space: 455411160
effective search space used: 455411160
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.