Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LCN12 Sequence: fasta or formatted (192aa) NCBI GI: 89886464
Description:

lipocalcin 12

Referenced in:

Lacrimal and Salivary Glands

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         13           2
 C cysteine            2.1          4           1
 D aspartate           5.7         11           2
 E glutamate           3.6          7           2
 F phenylalanine       5.7         11           1
 G glycine             7.8         15           1
 H histidine           2.1          4           1
 I isoleucine          2.1          4           1
 K lysine              0.5          1           1
 L leucine            14.1         27           2
 M methionine          2.1          4           1
 N asparagine          2.6          5           1
 P proline             7.3         14           3
 Q glutamine           6.8         13           1
 R arginine            6.8         13           2
 S serine              6.8         13           1
 T threonine           6.2         12           1
 V valine              6.2         12           2
 W tryptophan          3.6          7           1
 Y tyrosine            1.0          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   lipocalcin 12 
LCN2                  0.228   lipocalin 2 
PTGDS                 0.114   prostaglandin H2 D-isomerase 
LCN15                 0.040   lipocalin 15 
AMBP                  0.029   alpha-1-microglobulin/bikunin preproprotein 
C20orf95              0.019   PREDICTED: chromosome 20 open reading frame 95 [Hom...
C20orf95              0.019   PREDICTED: chromosome 20 open reading frame 95 [Hom...
C20orf95              0.019   PREDICTED: Rho GTPase-activating protein 18-like [H...
SLC39A13              0.013   solute carrier family 39 (zinc transporter), member ...
SLC39A13              0.013   solute carrier family 39 (zinc transporter), member...
LCN1                  0.013   lipocalin 1 precursor 
ZSWIM4                0.011   zinc finger, SWIM-type containing 4 
APOD                  0.011   apolipoprotein D precursor 
MAMLD1                0.011   mastermind-like domain containing 1 
LCP2                  0.008   lymphocyte cytosolic protein 2 
SETMAR                0.008   SET domain and mariner transposase fusion 
ALDH6A1               0.005   aldehyde dehydrogenase 6A1 precursor 
GPR150                0.005   G protein-coupled receptor 150 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press