Guide to the Human Genome
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Name: ZSWIM4 Sequence: fasta or formatted (989aa) NCBI GI: 190885491
Description:

zinc finger, SWIM-type containing 4

Referenced in:

Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.7         96           3
 C cysteine            2.6         26           1
 D aspartate           3.9         39           1
 E glutamate           7.0         69           3
 F phenylalanine       3.0         30           1
 G glycine             6.7         66           2
 H histidine           3.2         32           2
 I isoleucine          3.4         34           2
 K lysine              2.9         29           3
 L leucine            14.4        142           3
 M methionine          2.4         24           1
 N asparagine          2.1         21           1
 P proline             6.4         63           3
 Q glutamine           4.9         48           2
 R arginine            7.4         73           3
 S serine              6.0         59           2
 T threonine           4.8         47           2
 V valine              5.3         52           2
 W tryptophan          1.7         17           1
 Y tyrosine            2.2         22           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger, SWIM-type containing 4 
ZSWIM5                0.407   zinc finger, SWIM domain containing 5 
ZSWIM6                0.382   zinc finger, SWIM-type containing 6 
KIAA0913              0.101   hypothetical protein LOC23053 
EVI5L                 0.004   ecotropic viral integration site 5-like isoform 1 [...
EVI5L                 0.004   ecotropic viral integration site 5-like isoform 2 [H...
LOC100292407          0.004   PREDICTED: hypothetical protein 
UNC84A                0.004   unc-84 homolog A isoform a 
UNC84A                0.004   unc-84 homolog A isoform b 
KLRD1                 0.004   killer cell lectin-like receptor subfamily D, membe...
KLRD1                 0.004   killer cell lectin-like receptor subfamily D, member ...
HDAC4                 0.003   histone deacetylase 4 
KIAA0368              0.003   KIAA0368 protein 
MALT1                 0.003   mucosa associated lymphoid tissue lymphoma transloca...
MALT1                 0.003   mucosa associated lymphoid tissue lymphoma translocat...
LOC651986             0.003   PREDICTED: similar to forkhead box L2 
KLRD1                 0.003   killer cell lectin-like receptor subfamily D, member ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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