Guide to the Human Genome
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Name: GLRB Sequence: fasta or formatted (497aa) NCBI GI: 4504023
Description:

glycine receptor, beta

Referenced in:

GABA and Glycine

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         32           2
 C cysteine            2.4         12           1
 D aspartate           5.4         27           2
 E glutamate           4.2         21           2
 F phenylalanine       5.8         29           2
 G glycine             5.0         25           2
 H histidine           0.4          2           1
 I isoleucine          5.8         29           1
 K lysine              7.8         39           3
 L leucine            10.7         53           2
 M methionine          1.8          9           2
 N asparagine          5.0         25           2
 P proline             5.4         27           3
 Q glutamine           3.2         16           2
 R arginine            4.4         22           2
 S serine              7.2         36           2
 T threonine           5.4         27           2
 V valine              7.6         38           3
 W tryptophan          1.6          8           1
 Y tyrosine            4.0         20           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   glycine receptor, beta 
GLRA2                 0.356   glycine receptor, alpha 2 isoform B 
GLRA2                 0.355   glycine receptor, alpha 2 isoform A 
GLRA2                 0.355   glycine receptor, alpha 2 isoform A 
GLRA3                 0.351   glycine receptor, alpha 3 isoform a 
GLRA3                 0.351   glycine receptor, alpha 3 isoform b 
GLRA1                 0.339   glycine receptor, alpha 1 isoform 2 precursor [Homo...
GLRA1                 0.337   glycine receptor, alpha 1 isoform 1 precursor [Homo...
GLRA4                 0.316   glycine receptor, alpha 4 precursor 
GABRB1                0.255   gamma-aminobutyric acid (GABA) A receptor, beta 1 p...
GABRB3                0.245   gamma-aminobutyric acid (GABA) A receptor, beta 3 is...
GABRB3                0.245   gamma-aminobutyric acid (GABA) A receptor, beta 3 iso...
GABRB2                0.238   gamma-aminobutyric acid (GABA) A receptor, beta 2 iso...
GABRB2                0.233   gamma-aminobutyric acid (GABA) A receptor, beta 2 is...
GABRR1                0.226   gamma-aminobutyric acid (GABA) receptor, rho 1 [Hom...
GABRR3                0.224   gamma-aminobutyric acid (GABA) receptor, rho 3 [Hom...
GABRR2                0.218   gamma-aminobutyric acid (GABA) receptor, rho 2 prec...
GABRQ                 0.207   gamma-aminobutyric acid (GABA) receptor, theta precur...
GABRA6                0.205   gamma-aminobutyric acid A receptor, alpha 6 precurs...
GABRD                 0.203   gamma-aminobutyric acid (GABA) A receptor, delta pre...
GABRA4                0.202   gamma-aminobutyric acid A receptor, alpha 4 precurso...
GABRP                 0.197   gamma-aminobutyric acid (GABA) A receptor, pi 
GABRG2                0.196   gamma-aminobutyric acid A receptor, gamma 2 isoform ...
GABRA2                0.193   gamma-aminobutyric acid A receptor, alpha 2 
GABRA2                0.193   gamma-aminobutyric acid A receptor, alpha 2 precurs...
GABRG2                0.190   gamma-aminobutyric acid A receptor, gamma 2 isoform ...
GABRA1                0.186   gamma-aminobutyric acid (GABA) A receptor, alpha 1 ...
GABRA1                0.186   gamma-aminobutyric acid (GABA) A receptor, alpha 1 ...
GABRA1                0.186   gamma-aminobutyric acid (GABA) A receptor, alpha 1 ...
GABRA1                0.186   gamma-aminobutyric acid (GABA) A receptor, alpha 1 ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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