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Search of human proteins with 8923898
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|8923898 zinc finger protein 313 [Homo sapiens]
(228 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|8923898 zinc finger protein 313 [Homo sapiens] 488 e-138
gi|30520320 ring finger protein 166 [Homo sapiens] 214 4e-56
gi|21361539 ring finger protein 138 isoform 1 [Homo sapiens] 133 1e-31
gi|37595555 ring finger protein 125 [Homo sapiens] 132 3e-31
gi|38045934 ring finger protein 138 isoform 2 [Homo sapiens] 89 4e-18
gi|46852178 potassium channel modulatory factor 1 [Homo sapiens] 63 2e-10
gi|15208660 tripartite motif protein 21 [Homo sapiens] 52 5e-07
gi|22027630 TNF receptor-associated factor 6 [Homo sapiens] 51 7e-07
gi|4759254 TNF receptor-associated factor 6 [Homo sapiens] 51 7e-07
gi|87080813 LON peptidase N-terminal domain and ring finger 1 [H... 51 7e-07
gi|38679905 tripartite motif-containing 65 [Homo sapiens] 51 7e-07
gi|44680122 tripartite motif-containing 7 isoform 1 [Homo sapiens] 50 2e-06
gi|16076875 tripartite motif-containing 7 isoform 4 [Homo sapiens] 50 2e-06
gi|117938316 tripartite motif-containing 22 [Homo sapiens] 49 3e-06
gi|30023818 tripartite motif protein 50A [Homo sapiens] 49 3e-06
gi|54792146 tripartite motif-containing 47 [Homo sapiens] 49 3e-06
gi|148528975 LON peptidase N-terminal domain and ring finger 2 [... 49 4e-06
gi|22027622 TNF receptor-associated factor 4 [Homo sapiens] 49 4e-06
gi|14719418 tripartite motif protein TRIM5 isoform alpha [Homo s... 49 5e-06
gi|15011946 tripartite motif protein TRIM5 isoform delta [Homo s... 49 5e-06
gi|15011944 tripartite motif protein TRIM5 isoform gamma [Homo s... 49 5e-06
gi|73747840 LON peptidase N-terminal domain and ring finger 3 is... 49 5e-06
gi|37622896 LON peptidase N-terminal domain and ring finger 3 is... 49 5e-06
gi|5902054 ring finger protein 5 [Homo sapiens] 48 8e-06
gi|68160937 tripartite motif-containing 25 [Homo sapiens] 48 8e-06
gi|37588861 ring finger protein 41 isoform 1 [Homo sapiens] 47 1e-05
gi|5032071 ring finger protein 41 isoform 1 [Homo sapiens] 47 1e-05
gi|4506561 ring finger protein 4 [Homo sapiens] 47 1e-05
gi|18079262 tripartite motif-containing 6 isoform 2 [Homo sapiens] 47 1e-05
gi|51477692 tripartite motif-containing 6 isoform 1 [Homo sapiens] 47 1e-05
>gi|8923898 zinc finger protein 313 [Homo sapiens]
Length = 228
Score = 488 bits (1255), Expect = e-138
Identities = 228/228 (100%), Positives = 228/228 (100%)
Query: 1 MAAQQRDCGGAAQLAGPAAEADPLGRFTCPVCLEVYEKPVQVPCGHVFCSACLQECLKPK 60
MAAQQRDCGGAAQLAGPAAEADPLGRFTCPVCLEVYEKPVQVPCGHVFCSACLQECLKPK
Sbjct: 1 MAAQQRDCGGAAQLAGPAAEADPLGRFTCPVCLEVYEKPVQVPCGHVFCSACLQECLKPK 60
Query: 61 KPVCGVCRSALAPGVRAVELERQIESTETSCHGCRKNFFLSKIRSHVATCSKYQNYIMEG 120
KPVCGVCRSALAPGVRAVELERQIESTETSCHGCRKNFFLSKIRSHVATCSKYQNYIMEG
Sbjct: 61 KPVCGVCRSALAPGVRAVELERQIESTETSCHGCRKNFFLSKIRSHVATCSKYQNYIMEG 120
Query: 121 VKATIKDASLQPRNVPNRYTFPCPYCPEKNFDQEGLVEHCKLFHSTDTKSVVCPICASMP 180
VKATIKDASLQPRNVPNRYTFPCPYCPEKNFDQEGLVEHCKLFHSTDTKSVVCPICASMP
Sbjct: 121 VKATIKDASLQPRNVPNRYTFPCPYCPEKNFDQEGLVEHCKLFHSTDTKSVVCPICASMP 180
Query: 181 WGDPNYRSANFREHIQRRHRFSYDTFVDYDVDEEDMMNQVLQRSIIDQ 228
WGDPNYRSANFREHIQRRHRFSYDTFVDYDVDEEDMMNQVLQRSIIDQ
Sbjct: 181 WGDPNYRSANFREHIQRRHRFSYDTFVDYDVDEEDMMNQVLQRSIIDQ 228
>gi|30520320 ring finger protein 166 [Homo sapiens]
Length = 237
Score = 214 bits (546), Expect = 4e-56
Identities = 100/217 (46%), Positives = 135/217 (62%), Gaps = 6/217 (2%)
Query: 15 AGPAAEADPL-GRFTCPVCLEVYEKPVQV-PCGHVFCSACLQECLKPKKPVCGVCRSALA 72
AGPA L ++TCP+CLEVY +PV + CGH FC CLQ CL+ P+C +CR
Sbjct: 18 AGPAGGDSGLEAQYTCPICLEVYHRPVAIGSCGHTFCGECLQPCLQVPSPLCPLCRLPFD 77
Query: 73 PGV--RAVELERQIESTETSCHGCRKNFFLSKIRSHVATCSKYQNYIMEGVK--ATIKDA 128
P +A +E+Q+ S + C GC K L+K+R H+++C K Q + K + +
Sbjct: 78 PKKVDKATHVEKQLSSYKAPCRGCNKKVTLAKMRVHISSCLKVQEQMANCPKFVPVVPTS 137
Query: 129 SLQPRNVPNRYTFPCPYCPEKNFDQEGLVEHCKLFHSTDTKSVVCPICASMPWGDPNYRS 188
P N+PNR TF CPYC +N DQ+ LV+HC H +D VVCPIC++MPWGDP+Y+S
Sbjct: 138 QPIPSNIPNRSTFACPYCGARNLDQQELVKHCVESHRSDPNRVVCPICSAMPWGDPSYKS 197
Query: 189 ANFREHIQRRHRFSYDTFVDYDVDEEDMMNQVLQRSI 225
ANF +H+ RH+FSYDTFVDY +DEE L S+
Sbjct: 198 ANFLQHLLHRHKFSYDTFVDYSIDEEAAFQAALALSL 234
>gi|21361539 ring finger protein 138 isoform 1 [Homo sapiens]
Length = 245
Score = 133 bits (334), Expect = 1e-31
Identities = 74/227 (32%), Positives = 105/227 (46%), Gaps = 31/227 (13%)
Query: 27 FTCPVCLEVYEKPVQVP-CGHVFCSACLQECLKPKKPVCGVCRSAL-----APGVRAVEL 80
F CPVC EV + PV+ C HVFC C ++ C +CR + A RA++L
Sbjct: 16 FYCPVCQEVLKTPVRTTACQHVFCRKCFLTAMRESGAHCPLCRGNVTRRERACPERALDL 75
Query: 81 ERQIESTETSCHGCRKNFFLSKIRSHVATCSKYQNYIMEGVKATIKDASLQPRNVPNRY- 139
E + SC C K ++R H +C KYQ+ GV + I + + +V N
Sbjct: 76 ENIMRKFSGSCRCCAKQIKFYRMRHHYKSCKKYQDEY--GVSSIIPNFQISQDSVGNSNR 133
Query: 140 ----------------------TFPCPYCPEKNFDQEGLVEHCKLFHSTDTKSVVCPICA 177
TF CP C E NF ++ L++HC H V CPIC
Sbjct: 134 SETSTSDNTETYQENTSSSGHPTFKCPLCQESNFTRQRLLDHCNSNHLFQIVPVTCPICV 193
Query: 178 SMPWGDPNYRSANFREHIQRRHRFSYDTFVDYDVDEEDMMNQVLQRS 224
S+PWGDP+ + NF H+ +RH+F Y FV+ +DEE ++ S
Sbjct: 194 SLPWGDPSQITRNFVSHLNQRHQFDYGEFVNLQLDEETQYQTAVEES 240
>gi|37595555 ring finger protein 125 [Homo sapiens]
Length = 232
Score = 132 bits (331), Expect = 3e-31
Identities = 66/206 (32%), Positives = 116/206 (56%), Gaps = 13/206 (6%)
Query: 23 PLGRFTCPVCLEVYEKPVQVPCGHVFCSACLQECLKPKKPVCGVCRSAL-APGVRAVELE 81
P+ F C VCLEV +PV+ CGHVFC +C+ LK K C CR+ L + GV A ++
Sbjct: 31 PVTSFDCAVCLEVLHQPVRTRCGHVFCRSCIATSLKNNKWTCPYCRAYLPSEGVPATDVA 90
Query: 82 RQIESTETSCHGCRKNFFLSKIRSHVATCSKYQNYIMEGVKATIKDASLQPRNVPNRYTF 141
++++S +C C LS++R+H+ TC KY + G +++ + +
Sbjct: 91 KRMKSEYKNCAECDTLVCLSEMRAHIRTCQKYIDKY--GPLQELEETAAR---------C 139
Query: 142 PCPYCPEKNFDQEGLVEHCKLFHSTDTKSVVCPICASMPWGDPNYRSANFREHIQRRHRF 201
CP+C ++ ++ L++HC H ++ + V CP+C +P +P+ S + H+Q H
Sbjct: 140 VCPFC-QRELYEDSLLDHCITHHRSERRPVFCPLCRLIPDENPSSFSGSLIRHLQVSHTL 198
Query: 202 SYDTFVDYDVDEEDMMNQVLQRSIID 227
YD F+D+++ EE ++ +VL RS+++
Sbjct: 199 FYDDFIDFNIIEEALIRRVLDRSLLE 224
>gi|38045934 ring finger protein 138 isoform 2 [Homo sapiens]
Length = 151
Score = 88.6 bits (218), Expect = 4e-18
Identities = 36/85 (42%), Positives = 50/85 (58%)
Query: 140 TFPCPYCPEKNFDQEGLVEHCKLFHSTDTKSVVCPICASMPWGDPNYRSANFREHIQRRH 199
TF CP C E NF ++ L++HC H V CPIC S+PWGDP+ + NF H+ +RH
Sbjct: 62 TFKCPLCQESNFTRQRLLDHCNSNHLFQIVPVTCPICVSLPWGDPSQITRNFVSHLNQRH 121
Query: 200 RFSYDTFVDYDVDEEDMMNQVLQRS 224
+F Y FV+ +DEE ++ S
Sbjct: 122 QFDYGEFVNLQLDEETQYQTAVEES 146
>gi|46852178 potassium channel modulatory factor 1 [Homo sapiens]
Length = 381
Score = 63.2 bits (152), Expect = 2e-10
Identities = 26/71 (36%), Positives = 40/71 (56%)
Query: 134 NVPNRYTFPCPYCPEKNFDQEGLVEHCKLFHSTDTKSVVCPICASMPWGDPNYRSANFRE 193
+V +F CPYC + + + L EH H+ + V+CPICA++P GDPN+ + +F
Sbjct: 71 SVEQPQSFTCPYCGKMGYTETSLQEHVTSEHAETSTEVICPICAALPGGDPNHVTDDFAA 130
Query: 194 HIQRRHRFSYD 204
H+ HR D
Sbjct: 131 HLTLEHRAPRD 141
>gi|15208660 tripartite motif protein 21 [Homo sapiens]
Length = 475
Score = 51.6 bits (122), Expect = 5e-07
Identities = 19/41 (46%), Positives = 26/41 (63%)
Query: 28 TCPVCLEVYEKPVQVPCGHVFCSACLQECLKPKKPVCGVCR 68
TCP+CL+ + +PV + CGH FC C+ + K VC VCR
Sbjct: 15 TCPICLDPFVEPVSIECGHSFCQECISQVGKGGGSVCPVCR 55
>gi|22027630 TNF receptor-associated factor 6 [Homo sapiens]
Length = 522
Score = 51.2 bits (121), Expect = 7e-07
Identities = 31/104 (29%), Positives = 45/104 (43%), Gaps = 6/104 (5%)
Query: 13 QLAGPAAEADPL--GRFTCPVCLEVYEKPVQVPCGHVFCSACLQECLKPKKPVCGVCRSA 70
++ G E DP ++ CP+CL + VQ PCGH FC AC+ + ++ C V
Sbjct: 52 EIQGYDVEFDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEI 111
Query: 71 LAPGVRAVE--LERQIESTETSC--HGCRKNFFLSKIRSHVATC 110
L + +R+I S C GC L + H A C
Sbjct: 112 LLENQLFPDNFAKREILSLMVKCPNEGCLHKMELRHLEDHQAHC 155
>gi|4759254 TNF receptor-associated factor 6 [Homo sapiens]
Length = 522
Score = 51.2 bits (121), Expect = 7e-07
Identities = 31/104 (29%), Positives = 45/104 (43%), Gaps = 6/104 (5%)
Query: 13 QLAGPAAEADPL--GRFTCPVCLEVYEKPVQVPCGHVFCSACLQECLKPKKPVCGVCRSA 70
++ G E DP ++ CP+CL + VQ PCGH FC AC+ + ++ C V
Sbjct: 52 EIQGYDVEFDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEI 111
Query: 71 LAPGVRAVE--LERQIESTETSC--HGCRKNFFLSKIRSHVATC 110
L + +R+I S C GC L + H A C
Sbjct: 112 LLENQLFPDNFAKREILSLMVKCPNEGCLHKMELRHLEDHQAHC 155
>gi|87080813 LON peptidase N-terminal domain and ring finger 1 [Homo
sapiens]
Length = 773
Score = 51.2 bits (121), Expect = 7e-07
Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 27 FTCPVCLEVYEKPVQVPCGHVFCSACLQECLKPKKPVCGVCRSAL 71
F C +C+ ++ +PV PCGH FC CL+ CL P C +C+ +L
Sbjct: 477 FECSLCMRLFFEPVTTPCGHSFCKNCLERCL-DHAPYCPLCKESL 520
Score = 43.9 bits (102), Expect = 1e-04
Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 10 GAAQLAGPAAEAD--PLGRFTCPVCLEVYEKPVQVPCGHVFCSACLQECLKPKKPVCGVC 67
G A P A AD G C C +PV VPCGH +C CL+ L+ + C +C
Sbjct: 102 GLGWSAAPVAGADGGAGGLLRCLGCRGFLSEPVTVPCGHSYCRRCLRRELRAR---CRLC 158
Query: 68 RSALAP 73
R L P
Sbjct: 159 RDRLPP 164
>gi|38679905 tripartite motif-containing 65 [Homo sapiens]
Length = 517
Score = 51.2 bits (121), Expect = 7e-07
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 26 RFTCPVCLEVYEKPVQVPCGHVFCSACLQECLKPKKPVCGVCRSALAPGVRAVELERQI 84
+ TC +CL +Y+ PV +PCGH FC AC+++ C CR G EL R +
Sbjct: 9 KLTCAICLGLYQDPVTLPCGHNFCGACIRDWWDRCGKACPECREPFPDG---AELRRNV 64
>gi|44680122 tripartite motif-containing 7 isoform 1 [Homo
sapiens]
Length = 511
Score = 50.1 bits (118), Expect = 2e-06
Identities = 22/48 (45%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 9 GGAAQLAGPAAEADPLGRFTCPVCLEVYEKPVQVPCGHVFCSACLQEC 56
G A+ AAE G TC +CLE++ +PV V CGH FC AC+ C
Sbjct: 11 GTGAEALALAAELQ--GEATCSICLELFREPVSVECGHSFCRACIGRC 56
>gi|16076875 tripartite motif-containing 7 isoform 4 [Homo
sapiens]
Length = 221
Score = 50.1 bits (118), Expect = 2e-06
Identities = 22/48 (45%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 9 GGAAQLAGPAAEADPLGRFTCPVCLEVYEKPVQVPCGHVFCSACLQEC 56
G A+ AAE G TC +CLE++ +PV V CGH FC AC+ C
Sbjct: 11 GTGAEALALAAELQ--GEATCSICLELFREPVSVECGHSFCRACIGRC 56
>gi|117938316 tripartite motif-containing 22 [Homo sapiens]
Length = 498
Score = 49.3 bits (116), Expect = 3e-06
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 6/53 (11%)
Query: 28 TCPVCLEVYEKPVQVPCGHVFCSACLQECLKPK------KPVCGVCRSALAPG 74
TCP+CLE+ +P+ + CGH FC AC+ +K + C VC++ PG
Sbjct: 14 TCPICLELLTEPLSLDCGHSFCQACITAKIKESVIISRGESSCPVCQTRFQPG 66
>gi|30023818 tripartite motif protein 50A [Homo sapiens]
Length = 487
Score = 49.3 bits (116), Expect = 3e-06
Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 29 CPVCLEVYEKPVQVPCGHVFCSACL--QECLKPKKPVCGVCRSAL--APGVRAVELERQI 84
CP+CLEV+++P+ + CGH +C CL C + C VCR A+ + + V L R I
Sbjct: 16 CPICLEVFKEPLMLQCGHSYCKGCLVSLSCHLDAELRCPVCRQAVDGSSSLPNVSLARVI 75
Query: 85 ES 86
E+
Sbjct: 76 EA 77
>gi|54792146 tripartite motif-containing 47 [Homo sapiens]
Length = 638
Score = 49.3 bits (116), Expect = 3e-06
Identities = 19/32 (59%), Positives = 23/32 (71%)
Query: 22 DPLGRFTCPVCLEVYEKPVQVPCGHVFCSACL 53
D G F+CP+CLE +PV +PCGH FC ACL
Sbjct: 2 DGSGPFSCPICLEPLREPVTLPCGHNFCLACL 33
>gi|148528975 LON peptidase N-terminal domain and ring finger 2
[Homo sapiens]
Length = 754
Score = 48.9 bits (115), Expect = 4e-06
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 27 FTCPVCLEVYEKPVQVPCGHVFCSACLQECLKPKKPVCGVCRSALA 72
F C +C+ + +PV PCGH FC CL+ CL P C +C+ L+
Sbjct: 447 FECALCMRLLFEPVTTPCGHTFCLKCLERCL-DHAPHCPLCKDKLS 491
Score = 35.8 bits (81), Expect = 0.031
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 17 PAAEADPLGRFTCPVCLEVYEKPVQVPCGHVFCSACLQ 54
P A D LG CP C + KPV +PCG C C++
Sbjct: 134 PRAPRDLLG---CPRCRRLLHKPVTLPCGLTVCKRCVE 168
>gi|22027622 TNF receptor-associated factor 4 [Homo sapiens]
Length = 470
Score = 48.9 bits (115), Expect = 4e-06
Identities = 43/129 (33%), Positives = 56/129 (43%), Gaps = 12/129 (9%)
Query: 23 PLGRFTCPVCLEVYEKPVQVP-CGHVFCSACLQECLKPKKPVCGVCRSAL--APGVRAVE 79
P R CP+C + +PVQV CGH FC CLQE L C + L A E
Sbjct: 12 PKRRLLCPLCGKPMREPVQVSTCGHRFCDTCLQEFLSEGVFKCPEDQLPLDYAKIYPDPE 71
Query: 80 LERQIESTETSC----HGCRKNFFLSKIRSHVATCSKYQNYIMEGVKATIKDASLQPRNV 135
LE Q+ C GCR + L ++ H+ TCS N I + +K L R++
Sbjct: 72 LEVQVLGLPIRCIHSEEGCRWSGPLRHLQGHLNTCS--FNVIPCPNRCPMK---LSRRDL 126
Query: 136 PNRYTFPCP 144
P CP
Sbjct: 127 PAHLQHDCP 135
>gi|14719418 tripartite motif protein TRIM5 isoform alpha [Homo
sapiens]
Length = 493
Score = 48.5 bits (114), Expect = 5e-06
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 28 TCPVCLEVYEKPVQVPCGHVFCSACL-----QECLKPKKPVCGVCRSALAP 73
TCP+CLE+ +P+ + CGH FC ACL + L + C VCR + P
Sbjct: 14 TCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 64
>gi|15011946 tripartite motif protein TRIM5 isoform delta [Homo
sapiens]
Length = 326
Score = 48.5 bits (114), Expect = 5e-06
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 28 TCPVCLEVYEKPVQVPCGHVFCSACL-----QECLKPKKPVCGVCRSALAP 73
TCP+CLE+ +P+ + CGH FC ACL + L + C VCR + P
Sbjct: 14 TCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 64
>gi|15011944 tripartite motif protein TRIM5 isoform gamma [Homo
sapiens]
Length = 347
Score = 48.5 bits (114), Expect = 5e-06
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 28 TCPVCLEVYEKPVQVPCGHVFCSACL-----QECLKPKKPVCGVCRSALAP 73
TCP+CLE+ +P+ + CGH FC ACL + L + C VCR + P
Sbjct: 14 TCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 64
>gi|73747840 LON peptidase N-terminal domain and ring finger 3
isoform 1 [Homo sapiens]
Length = 759
Score = 48.5 bits (114), Expect = 5e-06
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 7 DCGGAAQLAGPAAEADPLGRFTCPVCLEVYEKPVQVPCGHVFCSACLQECLKPKKPVCGV 66
D G L+ P A D C +C+ ++ +PV PCGH FC CL+ CL C +
Sbjct: 446 DQGDKPALSLPLASFDA-SDLECALCMRLFYEPVTTPCGHTFCLKCLERCL-DHNAKCPL 503
Query: 67 CRSALA 72
C+ L+
Sbjct: 504 CKDGLS 509
Score = 38.1 bits (87), Expect = 0.006
Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 15 AGPAAEADPLGRFTCPVCLEVYEKPVQVPCGHVFCSACLQ--ECLKPKKPVCGVCRSAL 71
A AA + F C C PV + CGH FC CL+ + +CGV SAL
Sbjct: 144 AAAAAATEVWDGFKCRKCHGFLSDPVSLSCGHTFCKLCLERGRAADRRCALCGVKLSAL 202
>gi|37622896 LON peptidase N-terminal domain and ring finger 3
isoform 2 [Homo sapiens]
Length = 718
Score = 48.5 bits (114), Expect = 5e-06
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 7 DCGGAAQLAGPAAEADPLGRFTCPVCLEVYEKPVQVPCGHVFCSACLQECLKPKKPVCGV 66
D G L+ P A D C +C+ ++ +PV PCGH FC CL+ CL C +
Sbjct: 405 DQGDKPALSLPLASFDA-SDLECALCMRLFYEPVTTPCGHTFCLKCLERCL-DHNAKCPL 462
Query: 67 CRSALA 72
C+ L+
Sbjct: 463 CKDGLS 468
Score = 38.1 bits (87), Expect = 0.006
Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 15 AGPAAEADPLGRFTCPVCLEVYEKPVQVPCGHVFCSACLQ--ECLKPKKPVCGVCRSAL 71
A AA + F C C PV + CGH FC CL+ + +CGV SAL
Sbjct: 144 AAAAAATEVWDGFKCRKCHGFLSDPVSLSCGHTFCKLCLERGRAADRRCALCGVKLSAL 202
>gi|5902054 ring finger protein 5 [Homo sapiens]
Length = 180
Score = 47.8 bits (112), Expect = 8e-06
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 1 MAAQQRDCGGAAQLAGPAAEADPLGR-FTCPVCLEVYEKPVQVPCGHVFCSACLQECL-- 57
MAA + + GG GP E G F C +CLE + V CGH++C CL + L
Sbjct: 1 MAAAEEEDGGPE---GPNRERGGAGATFECNICLETAREAVVSVCGHLYCWPCLHQWLET 57
Query: 58 KPKKPVCGVCRSALA 72
+P++ C VC++ ++
Sbjct: 58 RPERQECPVCKAGIS 72
>gi|68160937 tripartite motif-containing 25 [Homo sapiens]
Length = 630
Score = 47.8 bits (112), Expect = 8e-06
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 19 AEADPLGR-FTCPVCLEVYEKPVQVPCGHVFCSACLQE--CLKPKKPVCGVCRS 69
AE PL +C +CLE +++PV PCGH FC +CL E ++ +C CR+
Sbjct: 2 AELCPLAEELSCSICLEPFKEPVTTPCGHNFCGSCLNETWAVQGSPYLCPQCRA 55
>gi|37588861 ring finger protein 41 isoform 1 [Homo sapiens]
Length = 317
Score = 47.4 bits (111), Expect = 1e-05
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Query: 29 CPVCLEVYEKPVQVP-CGHVFCSACLQECLKPKKPVCGVCRSAL-------APGVRAVEL 80
CP+C V E+PVQ P C H FC+AC+ + ++ C V RS + P + L
Sbjct: 18 CPICSGVLEEPVQAPHCEHAFCNACITQWFS-QQQTCPVDRSVVTVAHLRPVPRIMRNML 76
Query: 81 ERQIESTETSCHGCRKNFFLSKIRSHVATC 110
+ + + + GC L + SH++ C
Sbjct: 77 SKLQIACDNAVFGCSAVVRLDNLMSHLSDC 106
>gi|5032071 ring finger protein 41 isoform 1 [Homo sapiens]
Length = 317
Score = 47.4 bits (111), Expect = 1e-05
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Query: 29 CPVCLEVYEKPVQVP-CGHVFCSACLQECLKPKKPVCGVCRSAL-------APGVRAVEL 80
CP+C V E+PVQ P C H FC+AC+ + ++ C V RS + P + L
Sbjct: 18 CPICSGVLEEPVQAPHCEHAFCNACITQWFS-QQQTCPVDRSVVTVAHLRPVPRIMRNML 76
Query: 81 ERQIESTETSCHGCRKNFFLSKIRSHVATC 110
+ + + + GC L + SH++ C
Sbjct: 77 SKLQIACDNAVFGCSAVVRLDNLMSHLSDC 106
>gi|4506561 ring finger protein 4 [Homo sapiens]
Length = 190
Score = 47.0 bits (110), Expect = 1e-05
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 8/56 (14%)
Query: 23 PLGRFTCPVCLEVYEKPVQ-------VPCGHVFCSACLQECLKPKKPVCGVCRSAL 71
P G +CP+C++ Y + VQ CGHVFCS CL++ LK C CR +
Sbjct: 126 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK-NANTCPTCRKKI 180
>gi|18079262 tripartite motif-containing 6 isoform 2 [Homo
sapiens]
Length = 488
Score = 47.0 bits (110), Expect = 1e-05
Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 6/53 (11%)
Query: 28 TCPVCLEVYEKPVQVPCGHVFCSACL----QECL--KPKKPVCGVCRSALAPG 74
TCP+CLE+ +P+ + CGH FC AC+ +E + + + C VC+++ PG
Sbjct: 14 TCPICLELLTEPLSIDCGHSFCQACITPNGRESVIGQEGERSCPVCQTSYQPG 66
>gi|51477692 tripartite motif-containing 6 isoform 1 [Homo
sapiens]
Length = 516
Score = 47.0 bits (110), Expect = 1e-05
Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 6/53 (11%)
Query: 28 TCPVCLEVYEKPVQVPCGHVFCSACL----QECL--KPKKPVCGVCRSALAPG 74
TCP+CLE+ +P+ + CGH FC AC+ +E + + + C VC+++ PG
Sbjct: 42 TCPICLELLTEPLSIDCGHSFCQACITPNGRESVIGQEGERSCPVCQTSYQPG 94
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.136 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,783,806
Number of Sequences: 37866
Number of extensions: 445548
Number of successful extensions: 1898
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 175
Number of HSP's that attempted gapping in prelim test: 1499
Number of HSP's gapped (non-prelim): 559
length of query: 228
length of database: 18,247,518
effective HSP length: 99
effective length of query: 129
effective length of database: 14,498,784
effective search space: 1870343136
effective search space used: 1870343136
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.