Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 8923779
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|8923779 OTU domain containing 4 protein isoform 2 [Homo
sapiens]
(145 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|156630992 OTU domain containing 4 protein isoform 3 [Homo sap... 296 5e-81
gi|8923779 OTU domain containing 4 protein isoform 2 [Homo sapiens] 296 5e-81
gi|40807496 OTU domain containing 4 protein isoform 1 [Homo sapi... 296 5e-81
gi|223941923 OTU domain containing 1 [Homo sapiens] 35 0.029
gi|209977067 OTU domain containing 5 isoform c [Homo sapiens] 34 0.038
gi|209977021 OTU domain containing 5 isoform b [Homo sapiens] 34 0.038
gi|209977019 OTU domain containing 5 isoform b [Homo sapiens] 34 0.038
gi|62751964 YOD1 OTU deubiquinating enzyme 1 homolog [Homo sapiens] 34 0.038
gi|33457350 OTU domain containing 5 isoform a [Homo sapiens] 32 0.14
gi|46409282 OTU domain containing 6A [Homo sapiens] 32 0.19
gi|225735593 RNA polymerase II associated protein 3 isoform 2 [H... 30 0.55
gi|225735591 RNA polymerase II associated protein 3 isoform 1 [H... 30 0.55
gi|157364937 OTU domain containing 6B [Homo sapiens] 29 1.2
gi|31377468 dedicator of cytokinesis 2 [Homo sapiens] 29 1.6
gi|145699133 KPL2 protein isoform 1 [Homo sapiens] 28 2.7
gi|149363700 syntaxin binding protein 5-like [Homo sapiens] 28 2.7
gi|118498352 M-phase phosphoprotein 6 [Homo sapiens] 28 2.7
gi|21703367 Di-Ras2 [Homo sapiens] 28 3.5
gi|46399200 testis-specific bromodomain protein [Homo sapiens] 27 7.9
gi|46399198 testis-specific bromodomain protein [Homo sapiens] 27 7.9
gi|5453708 DNA-dependent protein kinase catalytic subunit-intera... 27 7.9
>gi|156630992 OTU domain containing 4 protein isoform 3 [Homo
sapiens]
Length = 1049
Score = 296 bits (757), Expect = 5e-81
Identities = 145/145 (100%), Positives = 145/145 (100%)
Query: 1 MACIHYLRENREKFEAFIEGSFEEYLKRLENPQEWVGQVEISALSLMYRKDFIIYREPNV 60
MACIHYLRENREKFEAFIEGSFEEYLKRLENPQEWVGQVEISALSLMYRKDFIIYREPNV
Sbjct: 1 MACIHYLRENREKFEAFIEGSFEEYLKRLENPQEWVGQVEISALSLMYRKDFIIYREPNV 60
Query: 61 SPSQVTENNFPEKVLLCFSNGNHYDIVYPIKYKESSAMCQSLLYELLYEKVFKTDVSKIV 120
SPSQVTENNFPEKVLLCFSNGNHYDIVYPIKYKESSAMCQSLLYELLYEKVFKTDVSKIV
Sbjct: 61 SPSQVTENNFPEKVLLCFSNGNHYDIVYPIKYKESSAMCQSLLYELLYEKVFKTDVSKIV 120
Query: 121 MELDTLEVADEDNSEISDSEDDSCK 145
MELDTLEVADEDNSEISDSEDDSCK
Sbjct: 121 MELDTLEVADEDNSEISDSEDDSCK 145
>gi|8923779 OTU domain containing 4 protein isoform 2 [Homo sapiens]
Length = 145
Score = 296 bits (757), Expect = 5e-81
Identities = 145/145 (100%), Positives = 145/145 (100%)
Query: 1 MACIHYLRENREKFEAFIEGSFEEYLKRLENPQEWVGQVEISALSLMYRKDFIIYREPNV 60
MACIHYLRENREKFEAFIEGSFEEYLKRLENPQEWVGQVEISALSLMYRKDFIIYREPNV
Sbjct: 1 MACIHYLRENREKFEAFIEGSFEEYLKRLENPQEWVGQVEISALSLMYRKDFIIYREPNV 60
Query: 61 SPSQVTENNFPEKVLLCFSNGNHYDIVYPIKYKESSAMCQSLLYELLYEKVFKTDVSKIV 120
SPSQVTENNFPEKVLLCFSNGNHYDIVYPIKYKESSAMCQSLLYELLYEKVFKTDVSKIV
Sbjct: 61 SPSQVTENNFPEKVLLCFSNGNHYDIVYPIKYKESSAMCQSLLYELLYEKVFKTDVSKIV 120
Query: 121 MELDTLEVADEDNSEISDSEDDSCK 145
MELDTLEVADEDNSEISDSEDDSCK
Sbjct: 121 MELDTLEVADEDNSEISDSEDDSCK 145
>gi|40807496 OTU domain containing 4 protein isoform 1 [Homo
sapiens]
Length = 1048
Score = 296 bits (757), Expect = 5e-81
Identities = 145/145 (100%), Positives = 145/145 (100%)
Query: 1 MACIHYLRENREKFEAFIEGSFEEYLKRLENPQEWVGQVEISALSLMYRKDFIIYREPNV 60
MACIHYLRENREKFEAFIEGSFEEYLKRLENPQEWVGQVEISALSLMYRKDFIIYREPNV
Sbjct: 1 MACIHYLRENREKFEAFIEGSFEEYLKRLENPQEWVGQVEISALSLMYRKDFIIYREPNV 60
Query: 61 SPSQVTENNFPEKVLLCFSNGNHYDIVYPIKYKESSAMCQSLLYELLYEKVFKTDVSKIV 120
SPSQVTENNFPEKVLLCFSNGNHYDIVYPIKYKESSAMCQSLLYELLYEKVFKTDVSKIV
Sbjct: 61 SPSQVTENNFPEKVLLCFSNGNHYDIVYPIKYKESSAMCQSLLYELLYEKVFKTDVSKIV 120
Query: 121 MELDTLEVADEDNSEISDSEDDSCK 145
MELDTLEVADEDNSEISDSEDDSCK
Sbjct: 121 MELDTLEVADEDNSEISDSEDDSCK 145
>gi|223941923 OTU domain containing 1 [Homo sapiens]
Length = 481
Score = 34.7 bits (78), Expect = 0.029
Identities = 20/97 (20%), Positives = 39/97 (40%), Gaps = 8/97 (8%)
Query: 4 IHYLRENREKFEAFIEGSFEEYLKRLENPQEWVGQVEISALSLMYRKDFIIYREPNVSPS 63
+HY+ ++ + F IEG E++ W G E+ A+ M + + +
Sbjct: 344 VHYIADHLDHFSPLIEGDVGEFIIAAAQDGAWAGYPELLAMGQMLNVNIHLTTGGRLESP 403
Query: 64 QVT--------ENNFPEKVLLCFSNGNHYDIVYPIKY 92
V+ E++ + L + + HYD V+ Y
Sbjct: 404 TVSTMIHYLGPEDSLRPSIWLSWLSNGHYDAVFDHSY 440
>gi|209977067 OTU domain containing 5 isoform c [Homo sapiens]
Length = 349
Score = 34.3 bits (77), Expect = 0.038
Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
Query: 3 CIHYLRENREKFEAFIEGSFEEYLKRLENPQEWVGQVEISALSLMYRKDFIIYR---EPN 59
C+ YL +N + F ++ F Y+ R +E+ A++ MY + +Y+ EP
Sbjct: 30 CMDYLMKNADYFSNYVTEDFTTYINRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYSTEP- 88
Query: 60 VSPSQVTENNFPEKVLLCFSNGNHYDIV 87
++ N E + + + HY+ V
Sbjct: 89 INTFHGIHQNEDEPIRVSYHRNIHYNSV 116
>gi|209977021 OTU domain containing 5 isoform b [Homo sapiens]
Length = 566
Score = 34.3 bits (77), Expect = 0.038
Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
Query: 3 CIHYLRENREKFEAFIEGSFEEYLKRLENPQEWVGQVEISALSLMYRKDFIIYR---EPN 59
C+ YL +N + F ++ F Y+ R +E+ A++ MY + +Y+ EP
Sbjct: 247 CMDYLMKNADYFSNYVTEDFTTYINRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYSTEP- 305
Query: 60 VSPSQVTENNFPEKVLLCFSNGNHYDIV 87
++ N E + + + HY+ V
Sbjct: 306 INTFHGIHQNEDEPIRVSYHRNIHYNSV 333
>gi|209977019 OTU domain containing 5 isoform b [Homo sapiens]
Length = 566
Score = 34.3 bits (77), Expect = 0.038
Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
Query: 3 CIHYLRENREKFEAFIEGSFEEYLKRLENPQEWVGQVEISALSLMYRKDFIIYR---EPN 59
C+ YL +N + F ++ F Y+ R +E+ A++ MY + +Y+ EP
Sbjct: 247 CMDYLMKNADYFSNYVTEDFTTYINRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYSTEP- 305
Query: 60 VSPSQVTENNFPEKVLLCFSNGNHYDIV 87
++ N E + + + HY+ V
Sbjct: 306 INTFHGIHQNEDEPIRVSYHRNIHYNSV 333
>gi|62751964 YOD1 OTU deubiquinating enzyme 1 homolog [Homo sapiens]
Length = 348
Score = 34.3 bits (77), Expect = 0.038
Identities = 20/71 (28%), Positives = 33/71 (46%)
Query: 15 EAFIEGSFEEYLKRLENPQEWVGQVEISALSLMYRKDFIIYREPNVSPSQVTENNFPEKV 74
EA + + +EY ++ W G +EIS LS Y+ + + V + E+ K
Sbjct: 199 EAILGKTNQEYCDWIKRDDTWGGAIEISILSKFYQCEICVVDTQTVRIDRFGEDAGYTKR 258
Query: 75 LLCFSNGNHYD 85
+L +G HYD
Sbjct: 259 VLLIYDGIHYD 269
>gi|33457350 OTU domain containing 5 isoform a [Homo sapiens]
Length = 571
Score = 32.3 bits (72), Expect = 0.14
Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 9/93 (9%)
Query: 3 CIHYLRENREKFEAFIEGSFEEYLKRLENPQEWVGQVEISALSLMYRKDFIIYR------ 56
C+ YL +N + F ++ F Y+ R +E+ A++ MY + +Y+
Sbjct: 247 CMDYLMKNADYFSNYVTEDFTTYINRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYSTGTS 306
Query: 57 --EPNVSPSQVTENNFPEKVLLCFSNGNHYDIV 87
EP ++ N E + + + HY+ V
Sbjct: 307 AVEP-INTFHGIHQNEDEPIRVSYHRNIHYNSV 338
>gi|46409282 OTU domain containing 6A [Homo sapiens]
Length = 288
Score = 32.0 bits (71), Expect = 0.19
Identities = 23/100 (23%), Positives = 44/100 (44%), Gaps = 8/100 (8%)
Query: 10 NREKFEAFIEGSFEEYLKRLENPQEWVGQVEISALSLMYRKDFIIYREPNVSPSQVTENN 69
N E ++F F Y + W GQ+E+ ALS + + + + SP+ +
Sbjct: 191 NPETSDSFGYDDFMIYCDNIVRTTAWGGQLELRALSHVLKTPIEVIQAD--SPTLIIGEE 248
Query: 70 FPEKVLL------CFSNGNHYDIVYPIKYKESSAMCQSLL 103
+ +K ++ +S G HY+ V P++ + + LL
Sbjct: 249 YVKKPIILVYLRYAYSLGEHYNSVTPLEAGAAGGVLPRLL 288
>gi|225735593 RNA polymerase II associated protein 3 isoform 2 [Homo
sapiens]
Length = 631
Score = 30.4 bits (67), Expect = 0.55
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 67 ENNFPEKVLLCFSNGNHYDIVYPIKYKESSAMCQ-----SLLYELLYEKVFKTDVSKIVM 121
+N PE+ L NGN + K KESS + + + YE K DV +I+
Sbjct: 45 QNGVPEENLPPIRNGN-FRKKKKGKAKESSKKTREENTKNRIKSYDYEAWAKLDVDRILD 103
Query: 122 ELDTLEVADEDNSEISDSEDD 142
ELD + E S+ S+SE+D
Sbjct: 104 ELDKDDSTHESLSQESESEED 124
>gi|225735591 RNA polymerase II associated protein 3 isoform 1 [Homo
sapiens]
Length = 665
Score = 30.4 bits (67), Expect = 0.55
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 67 ENNFPEKVLLCFSNGNHYDIVYPIKYKESSAMCQ-----SLLYELLYEKVFKTDVSKIVM 121
+N PE+ L NGN + K KESS + + + YE K DV +I+
Sbjct: 45 QNGVPEENLPPIRNGN-FRKKKKGKAKESSKKTREENTKNRIKSYDYEAWAKLDVDRILD 103
Query: 122 ELDTLEVADEDNSEISDSEDD 142
ELD + E S+ S+SE+D
Sbjct: 104 ELDKDDSTHESLSQESESEED 124
>gi|157364937 OTU domain containing 6B [Homo sapiens]
Length = 323
Score = 29.3 bits (64), Expect = 1.2
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 8/72 (11%)
Query: 22 FEEYLKRLENPQEWVGQVEISALSLMYRKDFIIYREPNVSPSQVTENNFPEKVLL----- 76
F++Y + + N W GQ+E+ ALS + + I + SP + + +K L+
Sbjct: 242 FQKYCEDIVNTAAWGGQLELRALSHILQTPIEIIQAD--SPPIIVGEEYSKKPLILVYMR 299
Query: 77 -CFSNGNHYDIV 87
+ G HY+ V
Sbjct: 300 HAYGLGEHYNSV 311
>gi|31377468 dedicator of cytokinesis 2 [Homo sapiens]
Length = 1830
Score = 28.9 bits (63), Expect = 1.6
Identities = 34/124 (27%), Positives = 53/124 (42%), Gaps = 29/124 (23%)
Query: 47 MYRKDFIIYREPNVSPSQVTENNFPEKVLLC-------FSNGNHYDIVYPIKYKESSAMC 99
++ K FI +E V + TEN P ++ L + G+ + +Y KE
Sbjct: 58 IFPKSFIHIKEVTVEKRRNTENIIPAEIPLAQEVTTTLWEWGSIWKQLYVASKKERFLQV 117
Query: 100 QSLLYEL-------------------LYEKV-FKTDVSKIVMELDTLEVADEDNSEISDS 139
QS++Y+L L +KV K D ++ELD L V DED + I D
Sbjct: 118 QSMMYDLMEWRSQLLSGTLPKDELKELKQKVTSKIDYGNKILELD-LIVRDEDGN-ILDP 175
Query: 140 EDDS 143
++ S
Sbjct: 176 DNTS 179
>gi|145699133 KPL2 protein isoform 1 [Homo sapiens]
Length = 1822
Score = 28.1 bits (61), Expect = 2.7
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 4 IHYLRENREKFEAF---IEGSFEEYLKRLENPQEWVGQVEISALSL 46
+ +LRE++ A+ I SF+E+LKR ++ Q++V Q + SL
Sbjct: 1046 LRHLREDQHTVLAYLYEIRTSFQEFLKRPDHKQDFVAQWQADFNSL 1091
>gi|149363700 syntaxin binding protein 5-like [Homo sapiens]
Length = 1186
Score = 28.1 bits (61), Expect = 2.7
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 9/63 (14%)
Query: 70 FPEKVLLCFSNGNHYDIVYPIKYKESSAMCQSLLYELLYEKVFKTDVSKIVMELDTLEVA 129
+PE ++ ++G+ IK+ ++SA+ +LY+L KVF + K+ T E+
Sbjct: 460 YPEIIITGHADGS-------IKFWDASAITLQMLYKLKTSKVF--EKQKVGEGKQTCEIV 510
Query: 130 DED 132
+ED
Sbjct: 511 EED 513
>gi|118498352 M-phase phosphoprotein 6 [Homo sapiens]
Length = 160
Score = 28.1 bits (61), Expect = 2.7
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Query: 93 KESSAMCQSLLYELLYEKVFKTDVSKIVMELDTLEVADEDNSE-----ISDSE 140
++S +C+ LLY + + F +V K++++++ A+E E +SD E
Sbjct: 61 EQSFLLCEDLLYGRMSFRGFNPEVEKLMLQMNAKHKAEEVEDETVELDVSDEE 113
>gi|21703367 Di-Ras2 [Homo sapiens]
Length = 199
Score = 27.7 bits (60), Expect = 3.5
Identities = 31/132 (23%), Positives = 60/132 (45%), Gaps = 25/132 (18%)
Query: 17 FIEGSFEE-YLKRLENPQEWVGQVEISALSLMYRKDFIIYREPNVSPSQVTE----NNFP 71
F++G+F E Y+ +E+ YR+ +I + ++ Q+T+ + FP
Sbjct: 27 FVKGTFRESYIPTVEDT---------------YRQ--VISCDKSICTLQITDTTGSHQFP 69
Query: 72 EKVLLCFSNGNHYDIVYPIKYKESSAMCQSLLYELLYEKVFKTDVSKIVMELDTLEVADE 131
L S G+ + +VY I ++S + +YE + E K DV I + L + +
Sbjct: 70 AMQRLSISKGHAFILVYSITSRQSLEELKP-IYEQICE--IKGDVESIPIMLVGNKCDES 126
Query: 132 DNSEISDSEDDS 143
+ E+ SE ++
Sbjct: 127 PSREVQSSEAEA 138
>gi|46399200 testis-specific bromodomain protein [Homo sapiens]
Length = 947
Score = 26.6 bits (57), Expect = 7.9
Identities = 27/104 (25%), Positives = 43/104 (41%), Gaps = 23/104 (22%)
Query: 55 YREPNVSPSQVTENNFPEKVLLCFSNGNHYDIVYPIKYKESSAMCQSLLYELLYEKVFK- 113
+ E +V+ + EN P+ VL + Y++V +K E C +L E+L +K F
Sbjct: 235 FTEKSVALPPIKEN-MPKNVLP--DSQQQYNVVKTVKVTEQLRHCSEILKEMLAKKHFSY 291
Query: 114 ------------------TDVSKIVMELDTLEVADEDNSEISDS 139
DV K M+L T++ DN E D+
Sbjct: 292 AWPFYNPVDVNALGLHNYYDVVKNPMDLGTIK-EKMDNQEYKDA 334
>gi|46399198 testis-specific bromodomain protein [Homo sapiens]
Length = 947
Score = 26.6 bits (57), Expect = 7.9
Identities = 27/104 (25%), Positives = 43/104 (41%), Gaps = 23/104 (22%)
Query: 55 YREPNVSPSQVTENNFPEKVLLCFSNGNHYDIVYPIKYKESSAMCQSLLYELLYEKVFK- 113
+ E +V+ + EN P+ VL + Y++V +K E C +L E+L +K F
Sbjct: 235 FTEKSVALPPIKEN-MPKNVLP--DSQQQYNVVKTVKVTEQLRHCSEILKEMLAKKHFSY 291
Query: 114 ------------------TDVSKIVMELDTLEVADEDNSEISDS 139
DV K M+L T++ DN E D+
Sbjct: 292 AWPFYNPVDVNALGLHNYYDVVKNPMDLGTIK-EKMDNQEYKDA 334
>gi|5453708 DNA-dependent protein kinase catalytic
subunit-interacting protein 2 [Homo sapiens]
Length = 187
Score = 26.6 bits (57), Expect = 7.9
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 48 YRKDFIIYREPN--VSPSQVTENNFPEKVLLCFSNGNHYDIVYPIKYKESSAMCQSLLYE 105
YRK I++ + + ++ EN F E+++ FS ++ + S +C+S E
Sbjct: 46 YRKSPIVHVPMSLIIQMPELRENPFKERIVAAFSEDGEGNLTFNDFVDMFSVLCESAPRE 105
Query: 106 LLYEKVFK 113
L FK
Sbjct: 106 LKANYAFK 113
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.134 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,272,285
Number of Sequences: 37866
Number of extensions: 206573
Number of successful extensions: 656
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 643
Number of HSP's gapped (non-prelim): 22
length of query: 145
length of database: 18,247,518
effective HSP length: 92
effective length of query: 53
effective length of database: 14,763,846
effective search space: 782483838
effective search space used: 782483838
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.