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Search of human proteins with 14149771
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|14149771 WD repeat domain 54 [Homo sapiens]
(334 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|14149771 WD repeat domain 54 [Homo sapiens] 688 0.0
gi|215272341 WD repeat domain 58 isoform 2 [Homo sapiens] 45 7e-05
gi|31543164 WD repeat domain 58 isoform 1 [Homo sapiens] 45 7e-05
gi|56243583 WD repeat domain 18 [Homo sapiens] 40 0.004
gi|31317272 WD repeat and FYVE domain containing 3 isoform 1 [Ho... 39 0.005
gi|118402582 cell division cycle 20 [Homo sapiens] 39 0.007
gi|5803221 WD repeat-containing protein 3 [Homo sapiens] 39 0.008
gi|53759148 retinoblastoma binding protein 5 [Homo sapiens] 38 0.014
gi|18874090 WD repeat domain 48 [Homo sapiens] 37 0.025
gi|221219020 NYD-SP11 protein [Homo sapiens] 36 0.055
gi|113865883 WD repeat domain 38 [Homo sapiens] 36 0.055
gi|30795121 F-box and WD repeat domain containing 8 isoform 2 [H... 36 0.055
gi|30795123 F-box and WD repeat domain containing 8 isoform 1 [H... 36 0.055
gi|83779014 katanin p80 subunit B 1 [Homo sapiens] 35 0.072
gi|4759276 RNA, U3 small nucleolar interacting protein 2 [Homo s... 35 0.12
gi|21703352 myofibrillogenesis regulator 1 isoform 2 [Homo sapiens] 35 0.12
gi|116642887 myofibrillogenesis regulator 1 isoform 1 [Homo sapi... 35 0.12
gi|94400919 WD repeat domain 90 [Homo sapiens] 35 0.12
gi|13324688 bromodomain and WD repeat domain containing 2 [Homo ... 35 0.12
gi|23199987 WD repeat domain 5B [Homo sapiens] 35 0.12
gi|4503513 eukaryotic translation initiation factor 3, subunit 2... 34 0.16
gi|66932902 SREBF chaperone protein [Homo sapiens] 33 0.27
gi|18677720 WD repeat and SOCS box-containing 1 isoform 1 [Homo ... 33 0.27
gi|14149696 SEC31 homolog B [Homo sapiens] 33 0.27
gi|5174447 guanine nucleotide binding protein (G protein), beta ... 33 0.36
gi|16554629 WD repeat domain 5 [Homo sapiens] 33 0.36
gi|16554627 WD repeat domain 5 [Homo sapiens] 33 0.36
gi|22749275 CDC20 cell division cycle 20 homolog B isoform 1 [Ho... 33 0.36
gi|224593764 CDC20 cell division cycle 20 homolog B isoform 2 [H... 33 0.36
gi|22749037 WD repeat domain 65 [Homo sapiens] 33 0.36
>gi|14149771 WD repeat domain 54 [Homo sapiens]
Length = 334
Score = 688 bits (1775), Expect = 0.0
Identities = 334/334 (100%), Positives = 334/334 (100%)
Query: 1 MFRWERSIPLRGSAAALCNNLSVLQLPARNLTYFGVVHGPSAQLLSAAPEGVPLAQRQLH 60
MFRWERSIPLRGSAAALCNNLSVLQLPARNLTYFGVVHGPSAQLLSAAPEGVPLAQRQLH
Sbjct: 1 MFRWERSIPLRGSAAALCNNLSVLQLPARNLTYFGVVHGPSAQLLSAAPEGVPLAQRQLH 60
Query: 61 AKEGAGVSPPLITQVHWCVLPFRVLLVLTSHRGIQMYESNGYTMVYWHALDSGDASPVQA 120
AKEGAGVSPPLITQVHWCVLPFRVLLVLTSHRGIQMYESNGYTMVYWHALDSGDASPVQA
Sbjct: 61 AKEGAGVSPPLITQVHWCVLPFRVLLVLTSHRGIQMYESNGYTMVYWHALDSGDASPVQA 120
Query: 121 VFARGIAASGHFICVGTWSGRVLVFDIPAKGPNIVLSEELAGHQMPITDIATEPAQGQDC 180
VFARGIAASGHFICVGTWSGRVLVFDIPAKGPNIVLSEELAGHQMPITDIATEPAQGQDC
Sbjct: 121 VFARGIAASGHFICVGTWSGRVLVFDIPAKGPNIVLSEELAGHQMPITDIATEPAQGQDC 180
Query: 181 VADMVTADDSGLLCVWRSGPEFTLLTRIPGFGVPCPSVQLWQGIIAAGYGNGQVHLYEAT 240
VADMVTADDSGLLCVWRSGPEFTLLTRIPGFGVPCPSVQLWQGIIAAGYGNGQVHLYEAT
Sbjct: 181 VADMVTADDSGLLCVWRSGPEFTLLTRIPGFGVPCPSVQLWQGIIAAGYGNGQVHLYEAT 240
Query: 241 TGNLHVQINAHARAICALDLASEVGKLLSAGEDTFVHIWKLSRNPESGYIEVEHCHGECV 300
TGNLHVQINAHARAICALDLASEVGKLLSAGEDTFVHIWKLSRNPESGYIEVEHCHGECV
Sbjct: 241 TGNLHVQINAHARAICALDLASEVGKLLSAGEDTFVHIWKLSRNPESGYIEVEHCHGECV 300
Query: 301 ADTQLCGARFCDSSGNSFAVTGYDLAEIRRFSSV 334
ADTQLCGARFCDSSGNSFAVTGYDLAEIRRFSSV
Sbjct: 301 ADTQLCGARFCDSSGNSFAVTGYDLAEIRRFSSV 334
>gi|215272341 WD repeat domain 58 isoform 2 [Homo sapiens]
Length = 296
Score = 45.4 bits (106), Expect = 7e-05
Identities = 45/191 (23%), Positives = 75/191 (39%), Gaps = 15/191 (7%)
Query: 121 VFARGIAASGHFICVGTWSGRVLVFDIPAKGPNIVLSEE------LAGHQMPITDIATEP 174
+F++ ++ G F+ G G++ +F + + + E H P+ + +
Sbjct: 27 IFSQSVSPCGKFLAAGNNYGQIAIFSLSSALSSEAKEESKKPVVTFQAHDGPVYSMVSTD 86
Query: 175 ----AQGQDCVADMVTAD--DSGLLCVWRSGPEFTLLTRIPGFGVPCPSVQLWQGIIAAG 228
+ G V + A+ G +WR P + +P V +I AG
Sbjct: 87 RHLLSAGDGEVKAWLWAEMLKKGCKELWRRQPPYRTSLEVPEINALL-LVPKENSLILAG 145
Query: 229 YGNGQVHLYEATTGNLHVQINAHARAICALDLASEVGKLLSAGEDTFVHIWKLSRNPESG 288
G+ Q+H + TG + H I L L ++LS GED V +W L E
Sbjct: 146 -GDCQLHTMDLETGTFTRVLRGHTDYIHCLALRERSPEVLSGGEDGAVRLWDLRTAKEVQ 204
Query: 289 YIEVEHCHGEC 299
IEV + H EC
Sbjct: 205 TIEV-YKHEEC 214
>gi|31543164 WD repeat domain 58 isoform 1 [Homo sapiens]
Length = 341
Score = 45.4 bits (106), Expect = 7e-05
Identities = 45/191 (23%), Positives = 75/191 (39%), Gaps = 15/191 (7%)
Query: 121 VFARGIAASGHFICVGTWSGRVLVFDIPAKGPNIVLSEE------LAGHQMPITDIATEP 174
+F++ ++ G F+ G G++ +F + + + E H P+ + +
Sbjct: 27 IFSQSVSPCGKFLAAGNNYGQIAIFSLSSALSSEAKEESKKPVVTFQAHDGPVYSMVSTD 86
Query: 175 ----AQGQDCVADMVTAD--DSGLLCVWRSGPEFTLLTRIPGFGVPCPSVQLWQGIIAAG 228
+ G V + A+ G +WR P + +P V +I AG
Sbjct: 87 RHLLSAGDGEVKAWLWAEMLKKGCKELWRRQPPYRTSLEVPEINALL-LVPKENSLILAG 145
Query: 229 YGNGQVHLYEATTGNLHVQINAHARAICALDLASEVGKLLSAGEDTFVHIWKLSRNPESG 288
G+ Q+H + TG + H I L L ++LS GED V +W L E
Sbjct: 146 -GDCQLHTMDLETGTFTRVLRGHTDYIHCLALRERSPEVLSGGEDGAVRLWDLRTAKEVQ 204
Query: 289 YIEVEHCHGEC 299
IEV + H EC
Sbjct: 205 TIEV-YKHEEC 214
>gi|56243583 WD repeat domain 18 [Homo sapiens]
Length = 432
Score = 39.7 bits (91), Expect = 0.004
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 234 VHLYEATTGNLHVQINAHARAICALDLASEVGKLLSAGEDTFVHIWKL 281
+HL+E +TGNL V ++ H + + L + +S G+D V +W L
Sbjct: 103 IHLWEVSTGNLLVILSRHYQDVSCLQFTGDSSHFISGGKDCLVLVWSL 150
>gi|31317272 WD repeat and FYVE domain containing 3 isoform 1 [Homo
sapiens]
Length = 3526
Score = 39.3 bits (90), Expect = 0.005
Identities = 26/110 (23%), Positives = 48/110 (43%), Gaps = 9/110 (8%)
Query: 184 MVTADDSGLLCVWRSGPE------FTLLTRIPGFG--VPCPSVQLWQGIIAAGYGNGQVH 235
++T S ++CVW G TL + G V C + L II +G +
Sbjct: 3093 VITGGTSTVVCVWEMGTSKEKAKTVTLKQALLGHTDTVTCATASLAYHIIVSGSRDRTCI 3152
Query: 236 LYEATTGNLHVQINAHARAICALDLASEVGKLLSAGEDTFVHIWKLSRNP 285
+++ + Q+ H + AL + G ++S T++H+W ++ NP
Sbjct: 3153 IWDLNKLSFLTQLRGHRAPVSALCINELTGDIVSCA-GTYIHVWSINGNP 3201
>gi|118402582 cell division cycle 20 [Homo sapiens]
Length = 499
Score = 38.9 bits (89), Expect = 0.007
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 224 IIAAGYGNGQVHLYEATTGNLHVQ-INAHARAICALDLASEVGKLLSAGEDTFVHIWKLS 282
I+++G +G +H ++ HV ++ H++ +C L A + L S G D V++W S
Sbjct: 280 ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWP-S 338
Query: 283 RNPESGYIEVE 293
E G++ ++
Sbjct: 339 APGEGGWVPLQ 349
>gi|5803221 WD repeat-containing protein 3 [Homo sapiens]
Length = 943
Score = 38.5 bits (88), Expect = 0.008
Identities = 17/55 (30%), Positives = 28/55 (50%)
Query: 225 IAAGYGNGQVHLYEATTGNLHVQINAHARAICALDLASEVGKLLSAGEDTFVHIW 279
+A GY +G + ++ +G +V N H AI L G+L S +DT + +W
Sbjct: 80 LAVGYEDGSIRIFSLLSGEGNVTFNGHKAAITTLKYDQLGGRLASGSKDTDIIVW 134
Score = 35.0 bits (79), Expect = 0.094
Identities = 16/55 (29%), Positives = 29/55 (52%)
Query: 225 IAAGYGNGQVHLYEATTGNLHVQINAHARAICALDLASEVGKLLSAGEDTFVHIW 279
+ G G++ LY+ +GNL I+AH A+ ++ L+ + ++ G D V W
Sbjct: 469 VVIGTKTGKLQLYDLASGNLLETIDAHDGALWSMSLSPDQRGFVTGGADKSVKFW 523
Score = 28.9 bits (63), Expect = 6.7
Identities = 19/89 (21%), Positives = 35/89 (39%)
Query: 213 VPCPSVQLWQGIIAAGYGNGQVHLYEATTGNLHVQINAHARAICALDLASEVGKLLSAGE 272
V C + +IA G + V ++ G+ H + AH ++ L + +AG+
Sbjct: 594 VICMDISHDGALIATGSADRNVKIWGLDFGDCHKSLFAHDDSVMYLQFVPKSHLFFTAGK 653
Query: 273 DTFVHIWKLSRNPESGYIEVEHCHGECVA 301
D + W + +E H C+A
Sbjct: 654 DHKIKQWDADKFEHIQTLEGHHQEIWCLA 682
>gi|53759148 retinoblastoma binding protein 5 [Homo sapiens]
Length = 538
Score = 37.7 bits (86), Expect = 0.014
Identities = 17/59 (28%), Positives = 32/59 (54%)
Query: 221 WQGIIAAGYGNGQVHLYEATTGNLHVQINAHARAICALDLASEVGKLLSAGEDTFVHIW 279
W ++A G +G++ +++ T + I+AH +C+L + + KL+SA D V W
Sbjct: 35 WGTLLAVGCNDGRIVIWDFLTRGIAKIISAHIHPVCSLCWSRDGHKLVSASTDNIVSQW 93
>gi|18874090 WD repeat domain 48 [Homo sapiens]
Length = 677
Score = 37.0 bits (84), Expect = 0.025
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 9/81 (11%)
Query: 235 HLYEATTGNLHVQINAHAR---------AICALDLASEVGKLLSAGEDTFVHIWKLSRNP 285
H + T G VQ++ R + AL L + +L +AG D+ + IW ++++
Sbjct: 4 HHRQNTAGRRKVQVSYVIRDEVEKYNRNGVNALQLDPALNRLFTAGRDSIIRIWSVNQHK 63
Query: 286 ESGYIEVEHCHGECVADTQLC 306
+ YI H + V D LC
Sbjct: 64 QDPYIASMEHHTDWVNDIVLC 84
>gi|221219020 NYD-SP11 protein [Homo sapiens]
Length = 2873
Score = 35.8 bits (81), Expect = 0.055
Identities = 31/138 (22%), Positives = 51/138 (36%), Gaps = 16/138 (11%)
Query: 159 ELAGHQMPITDIATEPAQGQDCVADMVTADDSGLLCVW--------------RSGPEFTL 204
EL G + I + + P G + V D+V SG L + G
Sbjct: 139 ELGGTGLQIAHMVSMP--GDELVQDIVLNGPSGSLLALCETVVRVLMHQGKGQLGEVKRF 196
Query: 205 LTRIPGFGVPCPSVQLWQGIIAAGYGNGQVHLYEATTGNLHVQINAHARAICALDLASEV 264
+ G + C QG + AG G++ ++ G+ AH + + E
Sbjct: 197 TSTSSGSSITCCFTCFDQGFLYAGNQAGEIQVWSLQQGHPLHSFQAHQSGVICIRSRPEA 256
Query: 265 GKLLSAGEDTFVHIWKLS 282
LL+AG D+ + W L+
Sbjct: 257 HTLLTAGSDSLIKEWNLT 274
>gi|113865883 WD repeat domain 38 [Homo sapiens]
Length = 314
Score = 35.8 bits (81), Expect = 0.055
Identities = 15/57 (26%), Positives = 32/57 (56%)
Query: 223 GIIAAGYGNGQVHLYEATTGNLHVQINAHARAICALDLASEVGKLLSAGEDTFVHIW 279
G++A+G + +H+++ TT +L +Q+ H + ++ + + L SAG V +W
Sbjct: 204 GLLASGSWDKTIHIWKPTTSSLLIQLKGHVTWVKSIAFSPDELWLASAGYSRMVKVW 260
Score = 29.6 bits (65), Expect = 3.9
Identities = 16/57 (28%), Positives = 30/57 (52%)
Query: 225 IAAGYGNGQVHLYEATTGNLHVQINAHARAICALDLASEVGKLLSAGEDTFVHIWKL 281
+A+G + +V L++ +G + + H +I + D + V L + D+ VHIW L
Sbjct: 120 LASGGWDKRVMLWDVQSGQMLRLLVGHRDSIQSSDFSPTVNCLATGSWDSTVHIWDL 176
>gi|30795121 F-box and WD repeat domain containing 8 isoform 2 [Homo
sapiens]
Length = 532
Score = 35.8 bits (81), Expect = 0.055
Identities = 15/61 (24%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 224 IIAAGYGNGQVHLYEATTGNLHVQINAHARAICALDLASEVGKLLSAGEDTFVHIWKLSR 283
++ +G +G+V +++ +GN+ + ++AH + A+ + + K++S GE+ V +W
Sbjct: 381 LMVSGNMDGRVRIHDLRSGNIALSLSAHQLRVSAVQM--DDWKIVSGGEEGLVSVWDYRM 438
Query: 284 N 284
N
Sbjct: 439 N 439
>gi|30795123 F-box and WD repeat domain containing 8 isoform 1 [Homo
sapiens]
Length = 598
Score = 35.8 bits (81), Expect = 0.055
Identities = 15/61 (24%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 224 IIAAGYGNGQVHLYEATTGNLHVQINAHARAICALDLASEVGKLLSAGEDTFVHIWKLSR 283
++ +G +G+V +++ +GN+ + ++AH + A+ + + K++S GE+ V +W
Sbjct: 447 LMVSGNMDGRVRIHDLRSGNIALSLSAHQLRVSAVQM--DDWKIVSGGEEGLVSVWDYRM 504
Query: 284 N 284
N
Sbjct: 505 N 505
>gi|83779014 katanin p80 subunit B 1 [Homo sapiens]
Length = 655
Score = 35.4 bits (80), Expect = 0.072
Identities = 26/128 (20%), Positives = 55/128 (42%), Gaps = 7/128 (5%)
Query: 158 EELAGHQMPITDIATEPAQGQDCVADMVTADDSGLLCVWRSGPEFTLLTRIPGFGVPCPS 217
+E+ H ++ + A G+ + T D + +W +++ + G P S
Sbjct: 14 QEIVAHASNVSSLVLGKASGRL----LATGGDDCRVNLWSINKPNCIMS-LTGHTSPVES 68
Query: 218 VQLW--QGIIAAGYGNGQVHLYEATTGNLHVQINAHARAICALDLASEVGKLLSAGEDTF 275
V+L + +I AG +G + +++ + + H IC+LD + S +DT
Sbjct: 69 VRLNTPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQDTN 128
Query: 276 VHIWKLSR 283
+ +W + R
Sbjct: 129 IKLWDIRR 136
>gi|4759276 RNA, U3 small nucleolar interacting protein 2 [Homo
sapiens]
Length = 475
Score = 34.7 bits (78), Expect = 0.12
Identities = 39/168 (23%), Positives = 65/168 (38%), Gaps = 20/168 (11%)
Query: 160 LAGHQMPITDIATEPAQGQDCVADMVTADDSGLLCVW--RSGPEFTLLTRI--------P 209
L GHQ+ IT + P D A A D ++ W SG + ++ R P
Sbjct: 142 LRGHQLSITCLVVTP----DDSAIFSAAKDCSII-KWSVESGRKLHVIPRAKKGAEGKPP 196
Query: 210 GFG--VPCPSVQLWQGIIAAGYGNGQVHLYEATTGNLHVQINAHARAICALDLASEVGKL 267
G V C ++ +A+G + + ++EA + H A+ L +L
Sbjct: 197 GHSSHVLCMAISSDGKYLASGDRSKLILIWEAQSCQHLYTFTGHRDAVSGLAFRRGTHQL 256
Query: 268 LSAGEDTFVHIWKLSRNPESGYIEVEHCHGECVADTQLCGARFCDSSG 315
S D V +W ++ E+ Y+E H + VA C ++G
Sbjct: 257 YSTSHDRSVKVWNVA---ENSYVETLFGHQDAVAALDALSRECCVTAG 301
>gi|21703352 myofibrillogenesis regulator 1 isoform 2 [Homo sapiens]
Length = 361
Score = 34.7 bits (78), Expect = 0.12
Identities = 42/146 (28%), Positives = 58/146 (39%), Gaps = 8/146 (5%)
Query: 17 LCNNLSVLQLPARNLTYFGVVHGPSAQLLSAAPEGVPLAQRQLHAKEGAGVSPPLITQVH 76
L N + VL +P + Y ++ AQL A P A + KEG + L T H
Sbjct: 91 LFNGVKVLPIPVLSDNYSYLIIDTQAQLAVAVDPSDPRAVQASIEKEGVTLVAILCTHKH 150
Query: 77 WCVLPFRVLLVLTSHRGIQMYESNGYTMVY-WHALDSGDASPVQAVFARGIAASGHFICV 135
W L HR ++Y S + Y H L D V + R +A GH
Sbjct: 151 WDHSGGNRDL-SRRHRDCRVYGSPQDGIPYLTHPLCHQDVVSVGRLQIRALATPGH---- 205
Query: 136 GTWSGRVLVFD-IPAKGPNIVLSEEL 160
T V + D P KGP+ + S +L
Sbjct: 206 -TQGHLVYLLDGEPYKGPSCLFSGDL 230
>gi|116642887 myofibrillogenesis regulator 1 isoform 1 [Homo
sapiens]
Length = 385
Score = 34.7 bits (78), Expect = 0.12
Identities = 42/146 (28%), Positives = 58/146 (39%), Gaps = 8/146 (5%)
Query: 17 LCNNLSVLQLPARNLTYFGVVHGPSAQLLSAAPEGVPLAQRQLHAKEGAGVSPPLITQVH 76
L N + VL +P + Y ++ AQL A P A + KEG + L T H
Sbjct: 115 LFNGVKVLPIPVLSDNYSYLIIDTQAQLAVAVDPSDPRAVQASIEKEGVTLVAILCTHKH 174
Query: 77 WCVLPFRVLLVLTSHRGIQMYESNGYTMVY-WHALDSGDASPVQAVFARGIAASGHFICV 135
W L HR ++Y S + Y H L D V + R +A GH
Sbjct: 175 WDHSGGNRDL-SRRHRDCRVYGSPQDGIPYLTHPLCHQDVVSVGRLQIRALATPGH---- 229
Query: 136 GTWSGRVLVFD-IPAKGPNIVLSEEL 160
T V + D P KGP+ + S +L
Sbjct: 230 -TQGHLVYLLDGEPYKGPSCLFSGDL 254
>gi|94400919 WD repeat domain 90 [Homo sapiens]
Length = 1748
Score = 34.7 bits (78), Expect = 0.12
Identities = 33/152 (21%), Positives = 69/152 (45%), Gaps = 18/152 (11%)
Query: 135 VGTWSGRVLVFDIPAKGPNIVLSEELAGHQMPITDIATEPAQGQDCVADMVTADDSGLLC 194
VGT +G L F A+G + L ++GH+ + ++ P + T + G +
Sbjct: 1410 VGTTAG-TLWFVSWAEGTSTRL---ISGHRSKVNEVVFSPGESH-----CATCSEDGSVR 1460
Query: 195 VWRSGP-----EFTLLTR---IPGFGVPCPSVQLWQGIIAAGYGNGQVHLYEATTGNLHV 246
VW +F +L + + PC + Q +AAGYG+G + ++ + + +
Sbjct: 1461 VWALASMELVIQFQVLNQSCLCLAWSPPCCG-RPEQQRLAAGYGDGSLRIFSVSRTAMEL 1519
Query: 247 QINAHARAICALDLASEVGKLLSAGEDTFVHI 278
+++ H A+ + +++ +LS +D V +
Sbjct: 1520 KMHPHPVALTTVAFSTDGQTVLSGDKDGLVAV 1551
>gi|13324688 bromodomain and WD repeat domain containing 2 [Homo
sapiens]
Length = 1224
Score = 34.7 bits (78), Expect = 0.12
Identities = 13/46 (28%), Positives = 29/46 (63%)
Query: 217 SVQLWQGIIAAGYGNGQVHLYEATTGNLHVQINAHARAICALDLAS 262
+++++Q ++A G NG V +Y T+G LH +++ H+ + ++ S
Sbjct: 480 NIKMYQPLLAVGTSNGSVLVYHLTSGLLHKELSIHSCEVKGIEWTS 525
>gi|23199987 WD repeat domain 5B [Homo sapiens]
Length = 330
Score = 34.7 bits (78), Expect = 0.12
Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 8/122 (6%)
Query: 160 LAGHQMPITDIATEPAQGQDCVADMVTADDSGLLCVW--RSGPEFTLLTRIPGFGVPCPS 217
L GH + I+D+A + +V+A D L +W RSG L + V C +
Sbjct: 79 LYGHNLEISDVAWSSDSSR-----LVSASDDKTLKLWDVRSGKCLKTLKGHSNY-VFCCN 132
Query: 218 VQLWQGIIAAGYGNGQVHLYEATTGNLHVQINAHARAICALDLASEVGKLLSAGEDTFVH 277
+I +G + V ++E TG ++AH+ + A+ ++S D
Sbjct: 133 FNPPSNLIISGSFDETVKIWEVKTGKCLKTLSAHSDPVSAVHFNCSGSLIVSGSYDGLCR 192
Query: 278 IW 279
IW
Sbjct: 193 IW 194
>gi|4503513 eukaryotic translation initiation factor 3, subunit 2
beta, 36kDa [Homo sapiens]
Length = 325
Score = 34.3 bits (77), Expect = 0.16
Identities = 17/72 (23%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
Query: 209 PGFGVPCPSVQLWQGI-------IAAGYGNGQVHLYEATTGNLHVQINAHARAICALDLA 261
P +PC ++ + I AG+ +G+++ Y A +G + V + H+R I + L+
Sbjct: 138 PYMKIPCNDSKITSAVWGPLGECIIAGHESGELNQYSAKSGEVLVNVKEHSRQINDIQLS 197
Query: 262 SEVGKLLSAGED 273
++ ++A +D
Sbjct: 198 RDMTMFVTASKD 209
>gi|66932902 SREBF chaperone protein [Homo sapiens]
Length = 1279
Score = 33.5 bits (75), Expect = 0.27
Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 11/121 (9%)
Query: 163 HQMPITDIATEPAQGQDCVADMVTADDSGLLCVWRSGPEFTLLTRIPGFGVPCPSVQLWQ 222
HQ PIT A + A G+ +VT L V+R L T + G +V + Q
Sbjct: 1078 HQKPIT--ALKAAAGR-----LVTGSQDHTLRVFRLEDSCCLFT-LQGHSGAITTVYIDQ 1129
Query: 223 G-IIAAGYGNGQVHLYEATTGNLHVQINAHARAICALDLASEVGKLLSAGEDTFVHIWKL 281
++A+G +G + L++ TG+ + AH + +L + ++S+G D + IW
Sbjct: 1130 TMVLASGGQDGAICLWDVLTGSRVSHVFAHRGDVTSLTCTTSC--VISSGLDDLISIWDR 1187
Query: 282 S 282
S
Sbjct: 1188 S 1188
>gi|18677720 WD repeat and SOCS box-containing 1 isoform 1 [Homo
sapiens]
Length = 421
Score = 33.5 bits (75), Expect = 0.27
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 222 QGIIAAGYGNGQVHLYEATTGNLHVQINAHARAICALDLASEVGKLL-SAGEDTFVHIWK 280
Q ++A G NG++ +++ TG L + + H + L A + +L SA D + +W
Sbjct: 140 QLLLATGLNNGRIKIWDVYTGKLLLNLVDHTEVVRDLTFAPDGSLILVSASRDKTLRVWD 199
Query: 281 L 281
L
Sbjct: 200 L 200
>gi|14149696 SEC31 homolog B [Homo sapiens]
Length = 1179
Score = 33.5 bits (75), Expect = 0.27
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Query: 223 GIIAAGYGNGQVHLYEAT----TGNLHV--QINAHARAICALDLASEVGKLLSAG-EDTF 275
G+I G NG + LY T +G V Q H A+ ALDL G LL++G D+
Sbjct: 86 GVIVGGGDNGMLILYNVTHILSSGKEPVIAQKQKHTGAVRALDLNPFQGNLLASGASDSE 145
Query: 276 VHIWKLS 282
+ IW L+
Sbjct: 146 IFIWDLN 152
>gi|5174447 guanine nucleotide binding protein (G protein), beta
polypeptide 2-like 1 [Homo sapiens]
Length = 317
Score = 33.1 bits (74), Expect = 0.36
Identities = 39/184 (21%), Positives = 78/184 (42%), Gaps = 30/184 (16%)
Query: 154 IVLSEELAGHQMPITDIATEPAQGQDCVADMVTADDSGLLCVWRSGPEFTLLTRIPGFGV 213
+ L L GH +T IAT P Q D + ++A + +W+ + T +G+
Sbjct: 5 MTLRGTLKGHNGWVTQIATTP-QFPDMI---LSASRDKTIIMWKLTRDET------NYGI 54
Query: 214 PCPSVQLWQGIIA------------AGYGNGQVHLYEATTGNLHVQINAHARAICALDLA 261
P +++ ++ +G +G + L++ TTG + H + + ++ +
Sbjct: 55 PQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFS 114
Query: 262 SEVGKLLSAGEDTFVHIWKLSRNPESGYIEVEHCHGECVADTQLCGARFCDSSGNSFAVT 321
S+ +++S D + +W + Y + H E V+ C RF +S N V+
Sbjct: 115 SDNRQIVSGSRDKTIKLW--NTLGVCKYTVQDESHSEWVS----C-VRFSPNSSNPIIVS 167
Query: 322 -GYD 324
G+D
Sbjct: 168 CGWD 171
>gi|16554629 WD repeat domain 5 [Homo sapiens]
Length = 334
Score = 33.1 bits (74), Expect = 0.36
Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 8/122 (6%)
Query: 160 LAGHQMPITDIATEPAQGQDCVADMVTADDSGLLCVWRSGPEFTLLTRIPGFG--VPCPS 217
++GH++ I+D+A +V+A D L +W L T + G V C +
Sbjct: 83 ISGHKLGISDVAWSSDSNL-----LVSASDDKTLKIWDVSSGKCLKT-LKGHSNYVFCCN 136
Query: 218 VQLWQGIIAAGYGNGQVHLYEATTGNLHVQINAHARAICALDLASEVGKLLSAGEDTFVH 277
+I +G + V +++ TG + AH+ + A+ + ++S+ D
Sbjct: 137 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 196
Query: 278 IW 279
IW
Sbjct: 197 IW 198
>gi|16554627 WD repeat domain 5 [Homo sapiens]
Length = 334
Score = 33.1 bits (74), Expect = 0.36
Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 8/122 (6%)
Query: 160 LAGHQMPITDIATEPAQGQDCVADMVTADDSGLLCVWRSGPEFTLLTRIPGFG--VPCPS 217
++GH++ I+D+A +V+A D L +W L T + G V C +
Sbjct: 83 ISGHKLGISDVAWSSDSNL-----LVSASDDKTLKIWDVSSGKCLKT-LKGHSNYVFCCN 136
Query: 218 VQLWQGIIAAGYGNGQVHLYEATTGNLHVQINAHARAICALDLASEVGKLLSAGEDTFVH 277
+I +G + V +++ TG + AH+ + A+ + ++S+ D
Sbjct: 137 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 196
Query: 278 IW 279
IW
Sbjct: 197 IW 198
>gi|22749275 CDC20 cell division cycle 20 homolog B isoform 1 [Homo
sapiens]
Length = 515
Score = 33.1 bits (74), Expect = 0.36
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 224 IIAAGYGNGQVHLYEATTGNLHVQINAHARAICALDLASEVGKLLSAG-EDTFVHIW 279
I+++G G+V+ ++ HV H +A+CAL + + G+LLS+G D + IW
Sbjct: 327 ILSSGSRLGRVYHHDVRVAQHHVGTLRHKQAVCALKWSPD-GRLLSSGCSDGLLTIW 382
>gi|224593764 CDC20 cell division cycle 20 homolog B isoform 2 [Homo
sapiens]
Length = 477
Score = 33.1 bits (74), Expect = 0.36
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 224 IIAAGYGNGQVHLYEATTGNLHVQINAHARAICALDLASEVGKLLSAG-EDTFVHIW 279
I+++G G+V+ ++ HV H +A+CAL + + G+LLS+G D + IW
Sbjct: 327 ILSSGSRLGRVYHHDVRVAQHHVGTLRHKQAVCALKWSPD-GRLLSSGCSDGLLTIW 382
>gi|22749037 WD repeat domain 65 [Homo sapiens]
Length = 698
Score = 33.1 bits (74), Expect = 0.36
Identities = 19/78 (24%), Positives = 32/78 (41%)
Query: 223 GIIAAGYGNGQVHLYEATTGNLHVQINAHARAICALDLASEVGKLLSAGEDTFVHIWKLS 282
G + A +H+Y T+ + H I ++ ++ KL+S G D V+ W LS
Sbjct: 483 GHLFAAVNGNVIHVYTTTSLENISSLKGHTGKIRSIVWNADDSKLISGGTDGAVYEWNLS 542
Query: 283 RNPESGYIEVEHCHGECV 300
++ C CV
Sbjct: 543 TGKRETECVLKSCSYNCV 560
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.137 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,537,465
Number of Sequences: 37866
Number of extensions: 627918
Number of successful extensions: 1590
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 1497
Number of HSP's gapped (non-prelim): 136
length of query: 334
length of database: 18,247,518
effective HSP length: 103
effective length of query: 231
effective length of database: 14,347,320
effective search space: 3314230920
effective search space used: 3314230920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.