Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 8923374
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|8923374 dihydrouridine synthase 2-like, SMM1 homolog [Homo
sapiens]
(493 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|8923374 dihydrouridine synthase 2-like, SMM1 homolog [Homo sa... 981 0.0
gi|31742496 dihydrouridine synthase 4-like [Homo sapiens] 119 5e-27
gi|40807366 PP3111 protein [Homo sapiens] 108 1e-23
gi|239788462 dihydrouridine synthase 3-like isoform 1 [Homo sapi... 73 5e-13
gi|239788483 dihydrouridine synthase 3-like isoform 2 [Homo sapi... 73 5e-13
gi|239754889 PREDICTED: similar to hCG2036697 [Homo sapiens] 35 0.20
gi|239749428 PREDICTED: hypothetical protein XP_002347033 [Homo ... 35 0.20
gi|239743562 PREDICTED: hypothetical protein XP_002342894 [Homo ... 35 0.20
gi|23510413 sorting nexin 26 [Homo sapiens] 33 0.77
gi|221316624 dystonin isoform 4 [Homo sapiens] 31 2.3
gi|221316622 dystonin isoform 3 [Homo sapiens] 31 2.3
gi|221316618 dystonin isoform 2 [Homo sapiens] 31 2.3
gi|34577047 dystonin isoform 1 [Homo sapiens] 31 2.3
gi|20357504 dystonin isoform 1eB precursor [Homo sapiens] 31 2.3
gi|34577049 dystonin isoform 1eA precursor [Homo sapiens] 31 2.3
gi|4502443 dystonin isoform 1e precursor [Homo sapiens] 31 2.3
gi|93141214 sodium channel, voltage-gated, type II, alpha isofor... 31 2.9
gi|93141212 sodium channel, voltage-gated, type II, alpha isofor... 31 2.9
gi|93141210 sodium channel, voltage-gated, type II, alpha isofor... 31 2.9
gi|150010604 kinesin family member 4B [Homo sapiens] 30 3.8
gi|119220552 sidekick 1 [Homo sapiens] 30 3.8
gi|31317301 nitric oxide synthase 1 (neuronal) adaptor protein i... 30 3.8
gi|41322923 plectin 1 isoform 11 [Homo sapiens] 30 3.8
gi|41322914 plectin 1 isoform 10 [Homo sapiens] 30 3.8
gi|41322919 plectin 1 isoform 8 [Homo sapiens] 30 3.8
gi|41322910 plectin 1 isoform 7 [Homo sapiens] 30 3.8
gi|41322916 plectin 1 isoform 6 [Homo sapiens] 30 3.8
gi|41322908 plectin 1 isoform 3 [Homo sapiens] 30 3.8
gi|41322912 plectin 1 isoform 2 [Homo sapiens] 30 3.8
gi|47607492 plectin 1 isoform 1 [Homo sapiens] 30 3.8
>gi|8923374 dihydrouridine synthase 2-like, SMM1 homolog [Homo
sapiens]
Length = 493
Score = 981 bits (2536), Expect = 0.0
Identities = 493/493 (100%), Positives = 493/493 (100%)
Query: 1 MILNSLSLCYHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVL 60
MILNSLSLCYHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVL
Sbjct: 1 MILNSLSLCYHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVL 60
Query: 61 STVDFVAPDDRVVFRTCEREQNRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKQY 120
STVDFVAPDDRVVFRTCEREQNRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKQY
Sbjct: 61 STVDFVAPDDRVVFRTCEREQNRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKQY 120
Query: 121 STKGGMGAALLSDPDKIEKILSTLVKGTRRPVTCKIRILPSLEDTLSLVKRIERTGIAAI 180
STKGGMGAALLSDPDKIEKILSTLVKGTRRPVTCKIRILPSLEDTLSLVKRIERTGIAAI
Sbjct: 121 STKGGMGAALLSDPDKIEKILSTLVKGTRRPVTCKIRILPSLEDTLSLVKRIERTGIAAI 180
Query: 181 AVHGRKREERPQHPVSCEVIKAIADTLSIPVIANGGSHDHIQQYSDIEDFRQATAASSVM 240
AVHGRKREERPQHPVSCEVIKAIADTLSIPVIANGGSHDHIQQYSDIEDFRQATAASSVM
Sbjct: 181 AVHGRKREERPQHPVSCEVIKAIADTLSIPVIANGGSHDHIQQYSDIEDFRQATAASSVM 240
Query: 241 VARAAMWNPSIFLKEGLRPLEEVMQKYIRYAVQYDNHYTNTKYCLCQMLREQLESPQGRL 300
VARAAMWNPSIFLKEGLRPLEEVMQKYIRYAVQYDNHYTNTKYCLCQMLREQLESPQGRL
Sbjct: 241 VARAAMWNPSIFLKEGLRPLEEVMQKYIRYAVQYDNHYTNTKYCLCQMLREQLESPQGRL 300
Query: 301 LHAAQSSREICEAFGLGAFYEETTQELDAQQARLSAKTSEQTGEPAEDTSGVIKMAVKFD 360
LHAAQSSREICEAFGLGAFYEETTQELDAQQARLSAKTSEQTGEPAEDTSGVIKMAVKFD
Sbjct: 301 LHAAQSSREICEAFGLGAFYEETTQELDAQQARLSAKTSEQTGEPAEDTSGVIKMAVKFD 360
Query: 361 RRAYPAQITPKMCLLEWCRREKLAQPVYETVQRPLDRLFSSIVTVAEQKYQSTLWDKSKK 420
RRAYPAQITPKMCLLEWCRREKLAQPVYETVQRPLDRLFSSIVTVAEQKYQSTLWDKSKK
Sbjct: 361 RRAYPAQITPKMCLLEWCRREKLAQPVYETVQRPLDRLFSSIVTVAEQKYQSTLWDKSKK 420
Query: 421 LAEQAAAIVCLRSQGLPEGRLGEESPSLHKRKREAPDQDPGGPRAQELAQPGDLCKKPFV 480
LAEQAAAIVCLRSQGLPEGRLGEESPSLHKRKREAPDQDPGGPRAQELAQPGDLCKKPFV
Sbjct: 421 LAEQAAAIVCLRSQGLPEGRLGEESPSLHKRKREAPDQDPGGPRAQELAQPGDLCKKPFV 480
Query: 481 ALGSGEESPLEGW 493
ALGSGEESPLEGW
Sbjct: 481 ALGSGEESPLEGW 493
>gi|31742496 dihydrouridine synthase 4-like [Homo sapiens]
Length = 317
Score = 119 bits (299), Expect = 5e-27
Identities = 86/301 (28%), Positives = 142/301 (47%), Gaps = 24/301 (7%)
Query: 15 ILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVLSTVDFVAPDDRVVF 74
+ APMVR L R L Y D+ Y ++ ++ + + +T P
Sbjct: 30 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVKSIKARDSEFTTNQGDCP------ 83
Query: 75 RTCEREQNRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKQYSTKGGMGAALLSDP 134
++ Q +DA AR+V GID+N GCP++++ G GA L++ P
Sbjct: 84 ---------LIVQFAANDARLLSDAARIVCPYANGIDINCGCPQRWAMAEGYGACLINKP 134
Query: 135 DKIEKILSTLVKGTRRP---VTCKIRILPSLEDTLSLVKRIERTGIAAIAVHGRKREERP 191
+ ++ ++ + P V+ KIRI L+ T+ L ++ E TG++ I VHGR EER
Sbjct: 135 ELVQDMVKQVRNQVETPGFSVSIKIRIHDDLKRTVDLCQKAEATGVSWITVHGRTAEERH 194
Query: 192 QHPVSCEVIKAIADTLSIPVIANGGSHDHIQQYSDIEDFRQATAASSVMVARAAMWNPSI 251
Q PV + IK I + +SIPVIANG I+ + E+ + T VMVAR + NP++
Sbjct: 195 Q-PVHYDSIKIIKENMSIPVIANG----DIRSLKEAENVWRITGTDGVMVARGLLANPAM 249
Query: 252 FLKEGLRPLEEVMQKYIRYAVQYDNHYTNTKYCLCQMLREQLESPQGRLLHAAQSSREIC 311
F PL+ + ++ A++ Y L M+ + + R+ +A S+ I
Sbjct: 250 FAGYEETPLKCIWD-WVDIALELGTPYMCFHQHLMYMMEKITSRQEKRVFNALSSTSAII 308
Query: 312 E 312
+
Sbjct: 309 D 309
>gi|40807366 PP3111 protein [Homo sapiens]
Length = 473
Score = 108 bits (269), Expect = 1e-23
Identities = 77/257 (29%), Positives = 128/257 (49%), Gaps = 22/257 (8%)
Query: 15 ILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVLSTVDFVAPDDRVVF 74
++APMV L RLL+ +GA + Y L ++ E L V P+DR +
Sbjct: 20 VVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCE--VCPEDRPL- 76
Query: 75 RTCEREQNRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKQYSTKGGMGAALLSDP 134
+ Q +D E + A L ++ ID+N+GCP+ + +G GA L +
Sbjct: 77 ----------IVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQDEW 126
Query: 135 DKIEKILSTLVKGTRRPVTCKIRILPSLEDTLSLVKRIERTGIAAIAVHGRKREERP--Q 192
D +++++ + PVTCKIR+ P ++ T+ + +E+ G + VHGR +E++
Sbjct: 127 DLLQRMILLAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLS 186
Query: 193 HPVSCEVIKAIADTLSIPVIANGGSHDHIQQYSDIEDFRQATAASSVMVARAAMWNPSIF 252
S E IKA+ ++IPV ANG +IQ D+E + T VM A + NP++F
Sbjct: 187 GAASWEHIKAVRKAVAIPVFANG----NIQCLQDVERCLRDTGVQGVMSAEGNLHNPALF 242
Query: 253 LKEGLRP-LEEVMQKYI 268
EG P + E+ ++Y+
Sbjct: 243 --EGRSPAVWELAEEYL 257
>gi|239788462 dihydrouridine synthase 3-like isoform 1 [Homo
sapiens]
Length = 650
Score = 73.2 bits (178), Expect = 5e-13
Identities = 68/251 (27%), Positives = 113/251 (45%), Gaps = 37/251 (14%)
Query: 13 KLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVLSTVDFVAPDDRV 72
KL LAP+ G LP R + +GAD+ C E M C ++ +S
Sbjct: 306 KLYLAPLTTCGNLPFRRICKRFGADVT-CGE-----MAVCTNLLQGQMSE---------- 349
Query: 73 VFRTCEREQNRVVFQMGTSDA------ERALAVARLVENDVAGIDVNMGCPKQYSTKGGM 126
+ +R Q +F + A + A ++R VE D +D+N+GCP K G
Sbjct: 350 -WALLKRHQCEDIFGVQLEGAFPDTMTKCAELLSRTVEVDF--VDINVGCPIDLVYKKGG 406
Query: 127 GAALLSDPDKIEKILSTLVKGTRRPVTCKIRILPSLEDTLSLVKR----IERTGIAAIAV 182
G AL++ K ++I+ + + P+T KIR +++ ++L R + G+A + +
Sbjct: 407 GCALMNRSTKFQQIVRGMNQVLDVPLTVKIR--TGVQERVNLAHRLLPELRDWGVALVTL 464
Query: 183 HGRKREERPQHPVSCEVIKAIADTLS-IPVIANGGSHDHIQQYSDIEDFRQATAASSVMV 241
HGR RE+R + I+ S +P+ NG I + D Q T + +M+
Sbjct: 465 HGRSREQRYTKLADWQYIEECVQAASPMPLFGNG----DILSFEDANRAMQ-TGVTGIMI 519
Query: 242 ARAAMWNPSIF 252
AR A+ P +F
Sbjct: 520 ARGALLKPWLF 530
>gi|239788483 dihydrouridine synthase 3-like isoform 2 [Homo
sapiens]
Length = 408
Score = 73.2 bits (178), Expect = 5e-13
Identities = 68/251 (27%), Positives = 113/251 (45%), Gaps = 37/251 (14%)
Query: 13 KLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVLSTVDFVAPDDRV 72
KL LAP+ G LP R + +GAD+ C E M C ++ +S
Sbjct: 64 KLYLAPLTTCGNLPFRRICKRFGADVT-CGE-----MAVCTNLLQGQMSE---------- 107
Query: 73 VFRTCEREQNRVVFQMGTSDA------ERALAVARLVENDVAGIDVNMGCPKQYSTKGGM 126
+ +R Q +F + A + A ++R VE D +D+N+GCP K G
Sbjct: 108 -WALLKRHQCEDIFGVQLEGAFPDTMTKCAELLSRTVEVDF--VDINVGCPIDLVYKKGG 164
Query: 127 GAALLSDPDKIEKILSTLVKGTRRPVTCKIRILPSLEDTLSLVKR----IERTGIAAIAV 182
G AL++ K ++I+ + + P+T KIR +++ ++L R + G+A + +
Sbjct: 165 GCALMNRSTKFQQIVRGMNQVLDVPLTVKIR--TGVQERVNLAHRLLPELRDWGVALVTL 222
Query: 183 HGRKREERPQHPVSCEVIKAIADTLS-IPVIANGGSHDHIQQYSDIEDFRQATAASSVMV 241
HGR RE+R + I+ S +P+ NG I + D Q T + +M+
Sbjct: 223 HGRSREQRYTKLADWQYIEECVQAASPMPLFGNG----DILSFEDANRAMQ-TGVTGIMI 277
Query: 242 ARAAMWNPSIF 252
AR A+ P +F
Sbjct: 278 ARGALLKPWLF 288
>gi|239754889 PREDICTED: similar to hCG2036697 [Homo sapiens]
Length = 1029
Score = 34.7 bits (78), Expect = 0.20
Identities = 30/94 (31%), Positives = 39/94 (41%), Gaps = 19/94 (20%)
Query: 272 VQYDNHYTNTKYCLCQMLREQLESPQGRLLHAAQSS--------------REICEAFGLG 317
V +N +NT C ML LE +G + HA + S R CEA G
Sbjct: 911 VSVENPCSNTVPACCLMLF--LEKREGSVQHATEDSQLQITTVDDRKGHKRCKCEALGDS 968
Query: 318 AFYEETTQELDAQQARLSAKTSEQTGEPAEDTSG 351
A+ EE TQE+D + K + P ED G
Sbjct: 969 AYKEEHTQEIDILR---RVKEDMASRNPQEDPGG 999
>gi|239749428 PREDICTED: hypothetical protein XP_002347033 [Homo
sapiens]
Length = 1029
Score = 34.7 bits (78), Expect = 0.20
Identities = 30/94 (31%), Positives = 39/94 (41%), Gaps = 19/94 (20%)
Query: 272 VQYDNHYTNTKYCLCQMLREQLESPQGRLLHAAQSS--------------REICEAFGLG 317
V +N +NT C ML LE +G + HA + S R CEA G
Sbjct: 911 VSVENPCSNTVPACCLMLF--LEKREGSVQHATEDSQLQITTVDDRKGHKRCKCEALGDS 968
Query: 318 AFYEETTQELDAQQARLSAKTSEQTGEPAEDTSG 351
A+ EE TQE+D + K + P ED G
Sbjct: 969 AYKEEHTQEIDILR---RVKEDMASRNPQEDPGG 999
>gi|239743562 PREDICTED: hypothetical protein XP_002342894 [Homo
sapiens]
Length = 1029
Score = 34.7 bits (78), Expect = 0.20
Identities = 30/94 (31%), Positives = 39/94 (41%), Gaps = 19/94 (20%)
Query: 272 VQYDNHYTNTKYCLCQMLREQLESPQGRLLHAAQSS--------------REICEAFGLG 317
V +N +NT C ML LE +G + HA + S R CEA G
Sbjct: 911 VSVENPCSNTVPACCLMLF--LEKREGSVQHATEDSQLQITTVDDRKGHKRCKCEALGDS 968
Query: 318 AFYEETTQELDAQQARLSAKTSEQTGEPAEDTSG 351
A+ EE TQE+D + K + P ED G
Sbjct: 969 AYKEEHTQEIDILR---RVKEDMASRNPQEDPGG 999
>gi|23510413 sorting nexin 26 [Homo sapiens]
Length = 1126
Score = 32.7 bits (73), Expect = 0.77
Identities = 31/115 (26%), Positives = 46/115 (40%), Gaps = 4/115 (3%)
Query: 379 RREKLAQPVYETVQRPLDRLFSSIVTVAE-QKYQSTLWDKSKKLAEQAAAIVCL---RSQ 434
R ++ V E + +D LFS T A L + K LA + L +Q
Sbjct: 490 REVRVQSVVVEFLLTHVDVLFSDTFTSAGLDPAGRCLLPRPKSLAGSCPSTRLLTLEEAQ 549
Query: 435 GLPEGRLGEESPSLHKRKREAPDQDPGGPRAQELAQPGDLCKKPFVALGSGEESP 489
+GRLG + + +P + G R ++ +PG K F ALG G P
Sbjct: 550 ARTQGRLGTPTEPTTPKAPASPAERRKGERGEKQRKPGGSSWKTFFALGRGPSVP 604
>gi|221316624 dystonin isoform 4 [Homo sapiens]
Length = 5526
Score = 31.2 bits (69), Expect = 2.3
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 85 VFQMGTSDAERALAVARLVENDVAGIDVNMGCPKQYSTKGGMGAALLSDPDKIEKILSTL 144
V+ M ++ ++ V +++N A K Y TK A+++D + IE ++STL
Sbjct: 1189 VYSMSSTYIDKLKTVNLVLKNTQAA----EALVKLYETKLCEEEAVIADKNNIENLISTL 1244
Query: 145 VKGTRRPVTCKIRILPSLEDTLSLVKRI 172
K R V K ++ +LED L K I
Sbjct: 1245 -KQWRSEVDEKRQVFHALEDELQKAKAI 1271
>gi|221316622 dystonin isoform 3 [Homo sapiens]
Length = 5537
Score = 31.2 bits (69), Expect = 2.3
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 85 VFQMGTSDAERALAVARLVENDVAGIDVNMGCPKQYSTKGGMGAALLSDPDKIEKILSTL 144
V+ M ++ ++ V +++N A K Y TK A+++D + IE ++STL
Sbjct: 1200 VYSMSSTYIDKLKTVNLVLKNTQAA----EALVKLYETKLCEEEAVIADKNNIENLISTL 1255
Query: 145 VKGTRRPVTCKIRILPSLEDTLSLVKRI 172
K R V K ++ +LED L K I
Sbjct: 1256 -KQWRSEVDEKRQVFHALEDELQKAKAI 1282
>gi|221316618 dystonin isoform 2 [Homo sapiens]
Length = 5675
Score = 31.2 bits (69), Expect = 2.3
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 85 VFQMGTSDAERALAVARLVENDVAGIDVNMGCPKQYSTKGGMGAALLSDPDKIEKILSTL 144
V+ M ++ ++ V +++N A K Y TK A+++D + IE ++STL
Sbjct: 1338 VYSMSSTYIDKLKTVNLVLKNTQAA----EALVKLYETKLCEEEAVIADKNNIENLISTL 1393
Query: 145 VKGTRRPVTCKIRILPSLEDTLSLVKRI 172
K R V K ++ +LED L K I
Sbjct: 1394 -KQWRSEVDEKRQVFHALEDELQKAKAI 1420
>gi|34577047 dystonin isoform 1 [Homo sapiens]
Length = 5497
Score = 31.2 bits (69), Expect = 2.3
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 85 VFQMGTSDAERALAVARLVENDVAGIDVNMGCPKQYSTKGGMGAALLSDPDKIEKILSTL 144
V+ M ++ ++ V +++N A K Y TK A+++D + IE ++STL
Sbjct: 1160 VYSMSSTYIDKLKTVNLVLKNTQAA----EALVKLYETKLCEEEAVIADKNNIENLISTL 1215
Query: 145 VKGTRRPVTCKIRILPSLEDTLSLVKRI 172
K R V K ++ +LED L K I
Sbjct: 1216 -KQWRSEVDEKRQVFHALEDELQKAKAI 1242
>gi|20357504 dystonin isoform 1eB precursor [Homo sapiens]
Length = 3062
Score = 31.2 bits (69), Expect = 2.3
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 85 VFQMGTSDAERALAVARLVENDVAGIDVNMGCPKQYSTKGGMGAALLSDPDKIEKILSTL 144
V+ M ++ ++ V +++N A K Y TK A+++D + IE ++STL
Sbjct: 834 VYSMSSTYIDKLKTVNLVLKNTQAA----EALVKLYETKLCEEEAVIADKNNIENLISTL 889
Query: 145 VKGTRRPVTCKIRILPSLEDTLSLVKRI 172
K R V K ++ +LED L K I
Sbjct: 890 -KQWRSEVDEKRQVFHALEDELQKAKAI 916
>gi|34577049 dystonin isoform 1eA precursor [Homo sapiens]
Length = 5171
Score = 31.2 bits (69), Expect = 2.3
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 85 VFQMGTSDAERALAVARLVENDVAGIDVNMGCPKQYSTKGGMGAALLSDPDKIEKILSTL 144
V+ M ++ ++ V +++N A K Y TK A+++D + IE ++STL
Sbjct: 834 VYSMSSTYIDKLKTVNLVLKNTQAA----EALVKLYETKLCEEEAVIADKNNIENLISTL 889
Query: 145 VKGTRRPVTCKIRILPSLEDTLSLVKRI 172
K R V K ++ +LED L K I
Sbjct: 890 -KQWRSEVDEKRQVFHALEDELQKAKAI 916
>gi|4502443 dystonin isoform 1e precursor [Homo sapiens]
Length = 2649
Score = 31.2 bits (69), Expect = 2.3
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 85 VFQMGTSDAERALAVARLVENDVAGIDVNMGCPKQYSTKGGMGAALLSDPDKIEKILSTL 144
V+ M ++ ++ V +++N A K Y TK A+++D + IE ++STL
Sbjct: 834 VYSMSSTYIDKLKTVNLVLKNTQAA----EALVKLYETKLCEEEAVIADKNNIENLISTL 889
Query: 145 VKGTRRPVTCKIRILPSLEDTLSLVKRI 172
K R V K ++ +LED L K I
Sbjct: 890 -KQWRSEVDEKRQVFHALEDELQKAKAI 916
>gi|93141214 sodium channel, voltage-gated, type II, alpha isoform 2
[Homo sapiens]
Length = 2005
Score = 30.8 bits (68), Expect = 2.9
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 8/68 (11%)
Query: 285 LCQMLREQLESPQGRLLHAAQSSREICEAFGLGAFYEETT--------QELDAQQARLSA 336
+ + L++Q E Q A+ SR+ A G+G F E ++ E + + R
Sbjct: 449 MLEQLKKQQEEAQAAAAAASAESRDFSGAGGIGVFSESSSVASKLSSKSEKELKNRRKKK 508
Query: 337 KTSEQTGE 344
K EQ+GE
Sbjct: 509 KQKEQSGE 516
>gi|93141212 sodium channel, voltage-gated, type II, alpha isoform 1
[Homo sapiens]
Length = 2005
Score = 30.8 bits (68), Expect = 2.9
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 8/68 (11%)
Query: 285 LCQMLREQLESPQGRLLHAAQSSREICEAFGLGAFYEETT--------QELDAQQARLSA 336
+ + L++Q E Q A+ SR+ A G+G F E ++ E + + R
Sbjct: 449 MLEQLKKQQEEAQAAAAAASAESRDFSGAGGIGVFSESSSVASKLSSKSEKELKNRRKKK 508
Query: 337 KTSEQTGE 344
K EQ+GE
Sbjct: 509 KQKEQSGE 516
>gi|93141210 sodium channel, voltage-gated, type II, alpha isoform 1
[Homo sapiens]
Length = 2005
Score = 30.8 bits (68), Expect = 2.9
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 8/68 (11%)
Query: 285 LCQMLREQLESPQGRLLHAAQSSREICEAFGLGAFYEETT--------QELDAQQARLSA 336
+ + L++Q E Q A+ SR+ A G+G F E ++ E + + R
Sbjct: 449 MLEQLKKQQEEAQAAAAAASAESRDFSGAGGIGVFSESSSVASKLSSKSEKELKNRRKKK 508
Query: 337 KTSEQTGE 344
K EQ+GE
Sbjct: 509 KQKEQSGE 516
>gi|150010604 kinesin family member 4B [Homo sapiens]
Length = 1234
Score = 30.4 bits (67), Expect = 3.8
Identities = 50/270 (18%), Positives = 109/270 (40%), Gaps = 40/270 (14%)
Query: 89 GTSDAERALAVARLVENDVAGIDVNMGCPKQYSTKGGMGAALLSD---PDKIEKILSTLV 145
G+ +AE + + L+E + + ++ N + S G A +L +++ + L+ +
Sbjct: 375 GSINAEPSENLQSLMEKNQSLVEENEKLSRCLSKAAGQTAQMLERIILTEQVNEKLNAKL 434
Query: 146 KGTRRPVTCKIRILPSLEDTLSLVKRIERTGIAAIAVHGRKREERPQHPVSCEVIKAIAD 205
+ R+ V CK+ D LV+ +E +E + + C + + I
Sbjct: 435 EELRQHVACKL-------DLQKLVETLE------------DQELKENVEIICNLQQLITQ 475
Query: 206 TLSIPVIANGGSHDH-IQQYSDIEDFRQATAASSVMVARAAMW-----------NPSIFL 253
V + D +++ + +E + + +S + A+ N ++ L
Sbjct: 476 LSDETVACTAAAIDTAVEEEAQVETSPETSRSSDAFTTQHALHQAQMSKEVVELNNALAL 535
Query: 254 KEGL-RPLEEVMQKYIRYAVQYDNHYTNTKYCLCQMLREQLESPQGRLLHAAQSSREICE 312
KE L R + + + QY ++ N + + + +E+ E L+ Q++++
Sbjct: 536 KEALVRKMTQNDNQLQPIQFQYQDNIKNLELEVINLQKEKEE-----LVRELQTAKKNVN 590
Query: 313 AFGLGAFYEETTQELDAQQARLSAKTSEQT 342
L + QEL+ Q A L K +EQ+
Sbjct: 591 QAKLSEHRHKLLQELEGQIADLKKKLNEQS 620
>gi|119220552 sidekick 1 [Homo sapiens]
Length = 2213
Score = 30.4 bits (67), Expect = 3.8
Identities = 36/117 (30%), Positives = 50/117 (42%), Gaps = 21/117 (17%)
Query: 294 ESPQGRLL------HAAQSSREICEAFGLGAFYEE-TTQELDAQQA---RLSAKTSEQTG 343
E P G +L A SS +GA + T +L + A RLSAKT + G
Sbjct: 1402 EEPNGIILGYQIAYRLASSSPHTFTTVEVGATVRQFTATDLAPESAYIFRLSAKTRQGWG 1461
Query: 344 EPAEDTSGVIKMAVKFDRRAYP-------AQITPKMCLLEWCRREKLAQPV-YETVQ 392
EP E T + K +R A P A++T + L+W A P+ Y T+Q
Sbjct: 1462 EPLEAT---VITTEKRERPAPPRELLVPQAEVTARSLRLQWVPGSDGASPIRYFTMQ 1515
>gi|31317301 nitric oxide synthase 1 (neuronal) adaptor protein
isoform 1 [Homo sapiens]
Length = 506
Score = 30.4 bits (67), Expect = 3.8
Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Query: 286 CQMLREQLESPQGRLLHAAQSSREICEAFGLGAFYEETTQELDAQQARLSAKTSEQTGEP 345
C + + + +S R++ + E+C L + T Q D Q+ S + S +G+P
Sbjct: 143 CNVFKSKKKSQAMRIVRTVGQAFEVCHKLSL----QHTQQNADGQEDGESERNSNSSGDP 198
Query: 346 AEDTSG 351
+G
Sbjct: 199 GRQLTG 204
>gi|41322923 plectin 1 isoform 11 [Homo sapiens]
Length = 4547
Score = 30.4 bits (67), Expect = 3.8
Identities = 35/109 (32%), Positives = 47/109 (43%), Gaps = 21/109 (19%)
Query: 274 YDNHYTNTKYCLCQMLREQL-ESPQG-RLLHAAQSSREICE-----------AFGLGAFY 320
Y + YT L Q L++ L QG RLL A S+ I + A G
Sbjct: 3105 YRDPYTGQSVSLFQALKKGLIPREQGLRLLDAQLSTGGIVDPSKSHRVPLDVACARGCLD 3164
Query: 321 EETTQELDAQQARLSAKTSEQTGEPAEDTSGVIKMAVKFDRRAYPAQIT 369
EET++ L A +A A + TGEPA T G + +R P Q+T
Sbjct: 3165 EETSRALSAPRADAKAYSDPSTGEPA--TYG------ELQQRCRPDQLT 3205
>gi|41322914 plectin 1 isoform 10 [Homo sapiens]
Length = 4551
Score = 30.4 bits (67), Expect = 3.8
Identities = 35/109 (32%), Positives = 47/109 (43%), Gaps = 21/109 (19%)
Query: 274 YDNHYTNTKYCLCQMLREQL-ESPQG-RLLHAAQSSREICE-----------AFGLGAFY 320
Y + YT L Q L++ L QG RLL A S+ I + A G
Sbjct: 3109 YRDPYTGQSVSLFQALKKGLIPREQGLRLLDAQLSTGGIVDPSKSHRVPLDVACARGCLD 3168
Query: 321 EETTQELDAQQARLSAKTSEQTGEPAEDTSGVIKMAVKFDRRAYPAQIT 369
EET++ L A +A A + TGEPA T G + +R P Q+T
Sbjct: 3169 EETSRALSAPRADAKAYSDPSTGEPA--TYG------ELQQRCRPDQLT 3209
>gi|41322919 plectin 1 isoform 8 [Homo sapiens]
Length = 4547
Score = 30.4 bits (67), Expect = 3.8
Identities = 35/109 (32%), Positives = 47/109 (43%), Gaps = 21/109 (19%)
Query: 274 YDNHYTNTKYCLCQMLREQL-ESPQG-RLLHAAQSSREICE-----------AFGLGAFY 320
Y + YT L Q L++ L QG RLL A S+ I + A G
Sbjct: 3105 YRDPYTGQSVSLFQALKKGLIPREQGLRLLDAQLSTGGIVDPSKSHRVPLDVACARGCLD 3164
Query: 321 EETTQELDAQQARLSAKTSEQTGEPAEDTSGVIKMAVKFDRRAYPAQIT 369
EET++ L A +A A + TGEPA T G + +R P Q+T
Sbjct: 3165 EETSRALSAPRADAKAYSDPSTGEPA--TYG------ELQQRCRPDQLT 3205
>gi|41322910 plectin 1 isoform 7 [Homo sapiens]
Length = 4515
Score = 30.4 bits (67), Expect = 3.8
Identities = 35/109 (32%), Positives = 47/109 (43%), Gaps = 21/109 (19%)
Query: 274 YDNHYTNTKYCLCQMLREQL-ESPQG-RLLHAAQSSREICE-----------AFGLGAFY 320
Y + YT L Q L++ L QG RLL A S+ I + A G
Sbjct: 3073 YRDPYTGQSVSLFQALKKGLIPREQGLRLLDAQLSTGGIVDPSKSHRVPLDVACARGCLD 3132
Query: 321 EETTQELDAQQARLSAKTSEQTGEPAEDTSGVIKMAVKFDRRAYPAQIT 369
EET++ L A +A A + TGEPA T G + +R P Q+T
Sbjct: 3133 EETSRALSAPRADAKAYSDPSTGEPA--TYG------ELQQRCRPDQLT 3173
>gi|41322916 plectin 1 isoform 6 [Homo sapiens]
Length = 4684
Score = 30.4 bits (67), Expect = 3.8
Identities = 35/109 (32%), Positives = 47/109 (43%), Gaps = 21/109 (19%)
Query: 274 YDNHYTNTKYCLCQMLREQL-ESPQG-RLLHAAQSSREICE-----------AFGLGAFY 320
Y + YT L Q L++ L QG RLL A S+ I + A G
Sbjct: 3242 YRDPYTGQSVSLFQALKKGLIPREQGLRLLDAQLSTGGIVDPSKSHRVPLDVACARGCLD 3301
Query: 321 EETTQELDAQQARLSAKTSEQTGEPAEDTSGVIKMAVKFDRRAYPAQIT 369
EET++ L A +A A + TGEPA T G + +R P Q+T
Sbjct: 3302 EETSRALSAPRADAKAYSDPSTGEPA--TYG------ELQQRCRPDQLT 3342
>gi|41322908 plectin 1 isoform 3 [Homo sapiens]
Length = 4525
Score = 30.4 bits (67), Expect = 3.8
Identities = 35/109 (32%), Positives = 47/109 (43%), Gaps = 21/109 (19%)
Query: 274 YDNHYTNTKYCLCQMLREQL-ESPQG-RLLHAAQSSREICE-----------AFGLGAFY 320
Y + YT L Q L++ L QG RLL A S+ I + A G
Sbjct: 3083 YRDPYTGQSVSLFQALKKGLIPREQGLRLLDAQLSTGGIVDPSKSHRVPLDVACARGCLD 3142
Query: 321 EETTQELDAQQARLSAKTSEQTGEPAEDTSGVIKMAVKFDRRAYPAQIT 369
EET++ L A +A A + TGEPA T G + +R P Q+T
Sbjct: 3143 EETSRALSAPRADAKAYSDPSTGEPA--TYG------ELQQRCRPDQLT 3183
>gi|41322912 plectin 1 isoform 2 [Homo sapiens]
Length = 4533
Score = 30.4 bits (67), Expect = 3.8
Identities = 35/109 (32%), Positives = 47/109 (43%), Gaps = 21/109 (19%)
Query: 274 YDNHYTNTKYCLCQMLREQL-ESPQG-RLLHAAQSSREICE-----------AFGLGAFY 320
Y + YT L Q L++ L QG RLL A S+ I + A G
Sbjct: 3091 YRDPYTGQSVSLFQALKKGLIPREQGLRLLDAQLSTGGIVDPSKSHRVPLDVACARGCLD 3150
Query: 321 EETTQELDAQQARLSAKTSEQTGEPAEDTSGVIKMAVKFDRRAYPAQIT 369
EET++ L A +A A + TGEPA T G + +R P Q+T
Sbjct: 3151 EETSRALSAPRADAKAYSDPSTGEPA--TYG------ELQQRCRPDQLT 3191
>gi|47607492 plectin 1 isoform 1 [Homo sapiens]
Length = 4574
Score = 30.4 bits (67), Expect = 3.8
Identities = 35/109 (32%), Positives = 47/109 (43%), Gaps = 21/109 (19%)
Query: 274 YDNHYTNTKYCLCQMLREQL-ESPQG-RLLHAAQSSREICE-----------AFGLGAFY 320
Y + YT L Q L++ L QG RLL A S+ I + A G
Sbjct: 3132 YRDPYTGQSVSLFQALKKGLIPREQGLRLLDAQLSTGGIVDPSKSHRVPLDVACARGCLD 3191
Query: 321 EETTQELDAQQARLSAKTSEQTGEPAEDTSGVIKMAVKFDRRAYPAQIT 369
EET++ L A +A A + TGEPA T G + +R P Q+T
Sbjct: 3192 EETSRALSAPRADAKAYSDPSTGEPA--TYG------ELQQRCRPDQLT 3232
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.133 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,482,817
Number of Sequences: 37866
Number of extensions: 831138
Number of successful extensions: 2464
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 2433
Number of HSP's gapped (non-prelim): 60
length of query: 493
length of database: 18,247,518
effective HSP length: 106
effective length of query: 387
effective length of database: 14,233,722
effective search space: 5508450414
effective search space used: 5508450414
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.