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Search of human proteins with 8923009
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|8923009 non-SMC element 4 homolog A [Homo sapiens]
(385 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|8923009 non-SMC element 4 homolog A [Homo sapiens] 770 0.0
gi|56605998 EP300 interacting inhibitor of differentiation 3 [Ho... 314 7e-86
gi|89276756 serine/threonine-protein kinase PRP4K [Homo sapiens] 40 0.005
gi|29568103 U1 small nuclear ribonucleoprotein 70 kDa [Homo sapi... 39 0.010
gi|146219841 PNMA-like 2 [Homo sapiens] 38 0.013
gi|239757331 PREDICTED: hypothetical protein [Homo sapiens] 38 0.018
gi|239751841 PREDICTED: hypothetical protein [Homo sapiens] 38 0.018
gi|239746332 PREDICTED: hypothetical protein XP_002343733 [Homo ... 38 0.018
gi|41327773 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Homo sapi... 38 0.018
gi|154146223 splicing factor, arginine/serine-rich 130 [Homo sap... 38 0.018
gi|52426743 cisplatin resistance-associated overexpressed protei... 38 0.018
gi|19923485 cisplatin resistance-associated overexpressed protei... 38 0.018
gi|154146193 splicing factor, arginine/serine-rich 130 [Homo sap... 38 0.018
gi|134288896 hypothetical protein LOC143684 [Homo sapiens] 37 0.023
gi|86991440 splicing factor, arginine/serine-rich 5 [Homo sapiens] 37 0.023
gi|86991438 splicing factor, arginine/serine-rich 5 [Homo sapiens] 37 0.023
gi|24307919 small nuclear ribonucleoprotein 27kDa (U4/U6.U5) [Ho... 37 0.030
gi|116089325 splicing factor, arginine/serine-rich 12 isoform a ... 37 0.030
gi|21040255 splicing factor, arginine/serine-rich 12 isoform b [... 37 0.030
gi|41327771 DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Homo sapi... 37 0.039
gi|71044479 death inducer-obliterator 1 isoform c [Homo sapiens] 36 0.051
gi|4827046 U2 small nuclear RNA auxiliary factor 1-like 2 [Homo ... 36 0.051
gi|224451135 splicing factor, arginine/serine-rich 15 isoform 3 ... 36 0.051
gi|224451133 splicing factor, arginine/serine-rich 15 isoform 2 ... 36 0.051
gi|40789229 splicing factor, arginine/serine-rich 15 isoform 1 [... 36 0.051
gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens] 36 0.067
gi|46852388 cell-cycle and apoptosis regulatory protein 1 [Homo ... 36 0.067
gi|7656938 CREBBP/EP300 inhibitor 1 [Homo sapiens] 36 0.067
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 36 0.067
gi|16306580 F-box and leucine-rich repeat protein 11 [Homo sapiens] 35 0.087
>gi|8923009 non-SMC element 4 homolog A [Homo sapiens]
Length = 385
Score = 770 bits (1989), Expect = 0.0
Identities = 385/385 (100%), Positives = 385/385 (100%)
Query: 1 MSGDSSGRGPEGRGRGRDPHRDRTRSRSRSRSPLSPRSRRGSARERREAPERPSLEDTEP 60
MSGDSSGRGPEGRGRGRDPHRDRTRSRSRSRSPLSPRSRRGSARERREAPERPSLEDTEP
Sbjct: 1 MSGDSSGRGPEGRGRGRDPHRDRTRSRSRSRSPLSPRSRRGSARERREAPERPSLEDTEP 60
Query: 61 SDSGDEMMDPASLEAEADQGLCRQIRHQYRALINSVQQNREDILNAGDKLTEVLEEANTL 120
SDSGDEMMDPASLEAEADQGLCRQIRHQYRALINSVQQNREDILNAGDKLTEVLEEANTL
Sbjct: 61 SDSGDEMMDPASLEAEADQGLCRQIRHQYRALINSVQQNREDILNAGDKLTEVLEEANTL 120
Query: 121 FNEVSRAREAVLDAHFLVLASDLGIEKAKQLRSDLSSFDMLRYVETLLTHMGVNPLEAEE 180
FNEVSRAREAVLDAHFLVLASDLGIEKAKQLRSDLSSFDMLRYVETLLTHMGVNPLEAEE
Sbjct: 121 FNEVSRAREAVLDAHFLVLASDLGIEKAKQLRSDLSSFDMLRYVETLLTHMGVNPLEAEE 180
Query: 181 LIRDEDSPDFEFIVYDSWKITGRTAENTFNKTHTFHFLLGSIYGECPVPKPRVDRPRKVP 240
LIRDEDSPDFEFIVYDSWKITGRTAENTFNKTHTFHFLLGSIYGECPVPKPRVDRPRKVP
Sbjct: 181 LIRDEDSPDFEFIVYDSWKITGRTAENTFNKTHTFHFLLGSIYGECPVPKPRVDRPRKVP 240
Query: 241 VIQEERAMPAQLRRMEESHQEATEKEVERILGLLQTYFREDPDTPMSFFDFVVDPHSFPR 300
VIQEERAMPAQLRRMEESHQEATEKEVERILGLLQTYFREDPDTPMSFFDFVVDPHSFPR
Sbjct: 241 VIQEERAMPAQLRRMEESHQEATEKEVERILGLLQTYFREDPDTPMSFFDFVVDPHSFPR 300
Query: 301 TVENIFHVSFIIRDGFARIRLDQDRLPVIEPVSINEENEGFEHNTQVRNQGIIALSYRDW 360
TVENIFHVSFIIRDGFARIRLDQDRLPVIEPVSINEENEGFEHNTQVRNQGIIALSYRDW
Sbjct: 301 TVENIFHVSFIIRDGFARIRLDQDRLPVIEPVSINEENEGFEHNTQVRNQGIIALSYRDW 360
Query: 361 EEIVKTFEISEPVITPSQRQQKPSA 385
EEIVKTFEISEPVITPSQRQQKPSA
Sbjct: 361 EEIVKTFEISEPVITPSQRQQKPSA 385
>gi|56605998 EP300 interacting inhibitor of differentiation 3 [Homo
sapiens]
Length = 333
Score = 314 bits (805), Expect = 7e-86
Identities = 166/317 (52%), Positives = 225/317 (70%), Gaps = 5/317 (1%)
Query: 63 SGDEMMDPASLEAEADQGLCRQIRHQYRALINSVQQNREDILN-AGDKLTEVLEEANTLF 121
SG+ +DP LE AD+ CR IR QYR L+ V+QNREDI++ A + LTE LEEAN LF
Sbjct: 18 SGEADVDPKLLELTADEEKCRSIRRQYRQLMYCVRQNREDIVSSANNSLTEALEEANVLF 77
Query: 122 NEVSRAREAVLDAHFLVLASDLGIEKAKQLRSDLSSFDMLRYVETLLTHMGVNPLEAEEL 181
+ VSR REA LDA FLV+ASDLG EKAKQL SD++ F+ L + + L +G+N +E +
Sbjct: 78 DGVSRTREAALDARFLVMASDLGKEKAKQLNSDMNFFNQLAFCDFLFLFVGLNWMEGDP- 136
Query: 182 IRDEDSPDFEFIVYDSWKITGRTAENTFNKTHTFHFLLGSIYGECPVPKPRVDRPRKVPV 241
D+ S + I WK + A + K TFHF+ GS E PKPR++ +KV
Sbjct: 137 --DKLSDCDDSIALSFWKAIEKEATSWMVKAETFHFVFGSFKLERSAPKPRLEHQKKVRK 194
Query: 242 IQEERAMPAQLRRME-ESHQEATEKEVERILGLLQTYFREDPDTPMSFFDFVVDPHSFPR 300
++E MP +L++++ S+ EATEK VERILGLLQTYFR+ PDTP+S+F+FV+DP+SF R
Sbjct: 195 MEENGNMPTKLQKLDLSSYPEATEKNVERILGLLQTYFRKYPDTPVSYFEFVIDPNSFSR 254
Query: 301 TVENIFHVSFIIRDGFARIRLDQDRLPVIEPVSINEENEGFEHNTQVRNQGIIALSYRDW 360
TVENIF+VSFI+RDGFARIRLD+DRLP++EP+++N+ EG + + R QG+I+L+ ++W
Sbjct: 255 TVENIFYVSFIVRDGFARIRLDEDRLPILEPMNVNQMGEGNDSSCHGRKQGVISLTLQEW 314
Query: 361 EEIVKTFEISEPVITPS 377
+ IV FEISE +IT S
Sbjct: 315 KNIVAAFEISEAMITYS 331
>gi|89276756 serine/threonine-protein kinase PRP4K [Homo sapiens]
Length = 1007
Score = 39.7 bits (91), Expect = 0.005
Identities = 32/102 (31%), Positives = 44/102 (43%), Gaps = 7/102 (6%)
Query: 8 RGPEGRGRGRDPHRDRTRSRSRSRSPLSPRSRRGSARERR----EAPERPSLED---TEP 60
R R R R P R RSRSR RSR G R R E + SL + E
Sbjct: 457 RSRSPRRRSRSPRRRDRGRRSRSRLRRRSRSRGGRRRRSRSKVKEDKFKGSLSEGMKVEQ 516
Query: 61 SDSGDEMMDPASLEAEADQGLCRQIRHQYRALINSVQQNRED 102
S D+ ++ +E E ++ L Q R Q +A++ + ED
Sbjct: 517 ESSSDDNLEDFDVEEEDEEALIEQRRIQRQAIVQKYKYLAED 558
>gi|29568103 U1 small nuclear ribonucleoprotein 70 kDa [Homo
sapiens]
Length = 437
Score = 38.5 bits (88), Expect = 0.010
Identities = 32/100 (32%), Positives = 44/100 (44%), Gaps = 5/100 (5%)
Query: 5 SSGRGPEGRGRGRDPHRDRTRSRSRSRSPLSPRSRRGSARERREAPERPSLEDTEPSDSG 64
S R E R R R+ +D+ R R R S R+RR RER+E + EPS++G
Sbjct: 266 SRSRDKEERRRSRERSKDKDRDRKRRSSRSRERARR--ERERKEELRGGGGDMAEPSEAG 323
Query: 65 DEMMD---PASLEAEADQGLCRQIRHQYRALINSVQQNRE 101
D D P L + G + R + R S + RE
Sbjct: 324 DAPPDDGPPGELGPDGPDGPEEKGRDRDRERRRSHRSERE 363
Score = 34.3 bits (77), Expect = 0.19
Identities = 33/113 (29%), Positives = 46/113 (40%), Gaps = 6/113 (5%)
Query: 4 DSSGRGPEGRGRGRDPHRDRTRSRSRSRSPLSPRSRRGSARERREAPERPSLEDTEPSDS 63
D + R E G PHRDR R R R R S R RERR + R + S S
Sbjct: 214 DDTSRYDERPGPSPLPHRDRDRDRERERRERS--RERDKERERRRSRSR---DRRRRSRS 268
Query: 64 GDEMMDPASLEAEADQGLCRQIR-HQYRALINSVQQNREDILNAGDKLTEVLE 115
D+ S E D+ R+ R + R ++ +E++ G + E E
Sbjct: 269 RDKEERRRSRERSKDKDRDRKRRSSRSRERARRERERKEELRGGGGDMAEPSE 321
Score = 34.3 bits (77), Expect = 0.19
Identities = 28/88 (31%), Positives = 35/88 (39%), Gaps = 11/88 (12%)
Query: 3 GDSSGRGPEGRGRGRDPHRDRT----------RSRSRSRSPLSPRSRRGSARERREAPER 52
G GPE +GR RD R R+ R R R R R RGS R R EA
Sbjct: 336 GPDGPDGPEEKGRDRDRERRRSHRSERERRRDRDRDRDRDREHKRGERGSERGRDEARGG 395
Query: 53 PSLEDTEPSDSGDEMMDPASLEAEADQG 80
+D G++ D +E+E G
Sbjct: 396 GGGQDNGLEGLGNDSRD-MYMESEGGDG 422
>gi|146219841 PNMA-like 2 [Homo sapiens]
Length = 635
Score = 38.1 bits (87), Expect = 0.013
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 2 SGDSSGRGPEGRGRGRDPHRDRTRSRSRS-RSPLSPRSRRGSARERREAPERPSLEDTEP 60
SG+ +G+ G R+P R R R+R+ R+ L+ + ++ S R AP R ED+
Sbjct: 140 SGEVTGQAGSLLGAARNPRRGRRGRRNRTRRNRLTQKGKKRSRGGRPSAPARSEAEDSSD 199
Query: 61 SDSG--DEMMDPASLEAEADQ 79
G E +D L E DQ
Sbjct: 200 ESLGIVIEEIDQGDLSGEEDQ 220
>gi|239757331 PREDICTED: hypothetical protein [Homo sapiens]
Length = 231
Score = 37.7 bits (86), Expect = 0.018
Identities = 36/138 (26%), Positives = 52/138 (37%), Gaps = 17/138 (12%)
Query: 8 RGPEGRGRGRDPHRDRTRSRS--------RSRSPLSPRSRRGSARERREAPERPSLEDTE 59
R P R R R R+R RS RSRS P S S +P PS
Sbjct: 33 RSPRLCSRSRSRSRSRSRRRSRSLRWLRRRSRSRSRPFSSGPSGPSGPSSPGGPSSGGAS 92
Query: 60 PSDSGDEMMDP---------ASLEAEADQGLCRQIRHQYRALINSVQQNREDILNAGDKL 110
P+ G M P S A + L R+ R + +L+ S+++ R + ++L
Sbjct: 93 PASEGSAMSPPPPRSSSLRSRSRRARSRLRLLRRFRSRSLSLLRSLERLRSSLSRLRERL 152
Query: 111 TEVLEEANTLFNEVSRAR 128
E +SR+R
Sbjct: 153 RRSRERERRRSRSLSRSR 170
>gi|239751841 PREDICTED: hypothetical protein [Homo sapiens]
Length = 231
Score = 37.7 bits (86), Expect = 0.018
Identities = 36/138 (26%), Positives = 52/138 (37%), Gaps = 17/138 (12%)
Query: 8 RGPEGRGRGRDPHRDRTRSRS--------RSRSPLSPRSRRGSARERREAPERPSLEDTE 59
R P R R R R+R RS RSRS P S S +P PS
Sbjct: 33 RSPRLCSRSRSRSRSRSRRRSRSLRWLRRRSRSRSRPFSSGPSGPSGPSSPGGPSSGGAS 92
Query: 60 PSDSGDEMMDP---------ASLEAEADQGLCRQIRHQYRALINSVQQNREDILNAGDKL 110
P+ G M P S A + L R+ R + +L+ S+++ R + ++L
Sbjct: 93 PASEGSAMSPPPPRSSSLRSRSRRARSRLRLLRRFRSRSLSLLRSLERLRSSLSRLRERL 152
Query: 111 TEVLEEANTLFNEVSRAR 128
E +SR+R
Sbjct: 153 RRSRERERRRSRSLSRSR 170
>gi|239746332 PREDICTED: hypothetical protein XP_002343733 [Homo
sapiens]
Length = 231
Score = 37.7 bits (86), Expect = 0.018
Identities = 36/138 (26%), Positives = 52/138 (37%), Gaps = 17/138 (12%)
Query: 8 RGPEGRGRGRDPHRDRTRSRS--------RSRSPLSPRSRRGSARERREAPERPSLEDTE 59
R P R R R R+R RS RSRS P S S +P PS
Sbjct: 33 RSPRLCSRSRSRSRSRSRRRSRSLRWLRRRSRSRSRPFSSGPSGPSGPSSPGGPSSGGAS 92
Query: 60 PSDSGDEMMDP---------ASLEAEADQGLCRQIRHQYRALINSVQQNREDILNAGDKL 110
P+ G M P S A + L R+ R + +L+ S+++ R + ++L
Sbjct: 93 PASEGSAMSPPPPRSSSLRSRSRRARSRLRLLRRFRSRSLSLLRSLERLRSSLSRLRERL 152
Query: 111 TEVLEEANTLFNEVSRAR 128
E +SR+R
Sbjct: 153 RRSRERERRRSRSLSRSR 170
>gi|41327773 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Homo
sapiens]
Length = 1031
Score = 37.7 bits (86), Expect = 0.018
Identities = 26/55 (47%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 2 SGDSSGRGPEGRGRGRDPHRDRTRSRS----RSRSPLSPRSRRGSARERREAPER 52
S S RG + R R RD R R RSRS RSRS R RR +RER + ER
Sbjct: 28 SDKRSKRGDDRRSRSRDRDRRRERSRSRDKRRSRSRDRKRLRRSRSRERDRSRER 82
Score = 37.4 bits (85), Expect = 0.023
Identities = 27/70 (38%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 15 RGRDPHRDRTRSRSRSRSPLSPRSRRGS-----ARERREAPERPSLEDTEPSDSGDEMMD 69
R R R R+ SRSRSRSP RS+RG +R+R ER D S S D
Sbjct: 9 RKRSASRGRSGSRSRSRSPSDKRSKRGDDRRSRSRDRDRRRERSRSRDKRRSRSRDRKRL 68
Query: 70 PASLEAEADQ 79
S E D+
Sbjct: 69 RRSRSRERDR 78
Score = 35.0 bits (79), Expect = 0.11
Identities = 33/95 (34%), Positives = 43/95 (45%), Gaps = 6/95 (6%)
Query: 13 RGRGRDPHRDRTRSRSRSRSPLSPRSRRGSARERREAPERPSLEDTEPSDSGDEM---MD 69
R R R RDR RSRSRSR S S G+ ++ E R S E T+ +S E D
Sbjct: 80 RERRRSRSRDRRRSRSRSRGRRSRSSSPGNKSKKTENRSR-SKEKTDGGESSKEKKKDKD 138
Query: 70 PASLEAEADQGLCRQ--IRHQYRALINSVQQNRED 102
E E D G Q + + R V++ RE+
Sbjct: 139 DKEDEKEKDAGNFDQNKLEEEMRKRKERVEKWREE 173
Score = 33.1 bits (74), Expect = 0.43
Identities = 20/54 (37%), Positives = 25/54 (46%)
Query: 13 RGRGRDPHRDRTRSRSRSRSPLSPRSRRGSARERREAPERPSLEDTEPSDSGDE 66
R R R+ R R R RSRSR RSR R R +P S + S S ++
Sbjct: 70 RSRSRERDRSRERRRSRSRDRRRSRSRSRGRRSRSSSPGNKSKKTENRSRSKEK 123
Score = 30.4 bits (67), Expect = 2.8
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 13 RGRGRDPHRDRTRSRS---RSRSPLSPRS---RRGSARERREAPERPSLEDTEPSDSGDE 66
R R RD R R+R R RSRS RS RR +R+RR + R + S G++
Sbjct: 51 RSRSRDKRRSRSRDRKRLRRSRSRERDRSRERRRSRSRDRRRSRSRSRGRRSRSSSPGNK 110
>gi|154146223 splicing factor, arginine/serine-rich 130 [Homo
sapiens]
Length = 805
Score = 37.7 bits (86), Expect = 0.018
Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 13 RGRGRDPHRDRTRSRSRSRSPLSPRSRRGSARERREAPER 52
R R R P R+R RSRSRSR + R+ R +R+RR+ ++
Sbjct: 606 RRRNRSPSRERRRSRSRSRDRRTNRASRSRSRDRRKIDDQ 645
Score = 29.6 bits (65), Expect = 4.8
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 6 SGRGPEGRGRGRDPHRDRTRSRSRSRSPLSPRSRRGSARERREAPERPSLEDTEPSDSGD 65
S R R R R+ R R RSRSRS R RR + R + +R ++D + SG+
Sbjct: 597 SNRNSIERERRRNRSPSRERRRSRSRS----RDRRTNRASRSRSRDRRKIDDQRGNLSGN 652
>gi|52426743 cisplatin resistance-associated overexpressed protein
[Homo sapiens]
Length = 432
Score = 37.7 bits (86), Expect = 0.018
Identities = 25/65 (38%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 13 RGRGRDPHRDRTRSRSRSRS-PLSPRSRRGSARERREAPERPSLEDTEPSDSGDEMMDPA 71
R R R+ R R+R R RSRS S R R +R+RR + R S S D D
Sbjct: 316 RSRSRERRRSRSRDRRRSRSHDRSERKHRSRSRDRRRSKSRDRKSYKHRSKSRDREQDRK 375
Query: 72 SLEAE 76
S E E
Sbjct: 376 SKEKE 380
Score = 29.6 bits (65), Expect = 4.8
Identities = 24/101 (23%), Positives = 36/101 (35%), Gaps = 3/101 (2%)
Query: 8 RGPEGRGRGRDPHRDRTRSRSRSRSPLSPRSRRGSARERREAPERPSLEDTEPSDSGDEM 67
R R HR R+R R RS+S + S RE + ++ SD
Sbjct: 331 RRSRSHDRSERKHRSRSRDRRRSKSRDRKSYKHRSKSRDREQDRKSKEKEKRGSDDKKSS 390
Query: 68 MDPASLEAEADQGLCRQIRHQYRALINSVQQNREDILNAGD 108
+ S E +++ + N V EDI + GD
Sbjct: 391 VKSGSREKQSEDTNTESKESDTK---NEVNGTSEDIKSEGD 428
>gi|19923485 cisplatin resistance-associated overexpressed protein
[Homo sapiens]
Length = 432
Score = 37.7 bits (86), Expect = 0.018
Identities = 25/65 (38%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 13 RGRGRDPHRDRTRSRSRSRS-PLSPRSRRGSARERREAPERPSLEDTEPSDSGDEMMDPA 71
R R R+ R R+R R RSRS S R R +R+RR + R S S D D
Sbjct: 316 RSRSRERRRSRSRDRRRSRSHDRSERKHRSRSRDRRRSKSRDRKSYKHRSKSRDREQDRK 375
Query: 72 SLEAE 76
S E E
Sbjct: 376 SKEKE 380
Score = 29.6 bits (65), Expect = 4.8
Identities = 24/101 (23%), Positives = 36/101 (35%), Gaps = 3/101 (2%)
Query: 8 RGPEGRGRGRDPHRDRTRSRSRSRSPLSPRSRRGSARERREAPERPSLEDTEPSDSGDEM 67
R R HR R+R R RS+S + S RE + ++ SD
Sbjct: 331 RRSRSHDRSERKHRSRSRDRRRSKSRDRKSYKHRSKSRDREQDRKSKEKEKRGSDDKKSS 390
Query: 68 MDPASLEAEADQGLCRQIRHQYRALINSVQQNREDILNAGD 108
+ S E +++ + N V EDI + GD
Sbjct: 391 VKSGSREKQSEDTNTESKESDTK---NEVNGTSEDIKSEGD 428
>gi|154146193 splicing factor, arginine/serine-rich 130 [Homo
sapiens]
Length = 805
Score = 37.7 bits (86), Expect = 0.018
Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 13 RGRGRDPHRDRTRSRSRSRSPLSPRSRRGSARERREAPER 52
R R R P R+R RSRSRSR + R+ R +R+RR+ ++
Sbjct: 606 RRRNRSPSRERRRSRSRSRDRRTNRASRSRSRDRRKIDDQ 645
Score = 29.6 bits (65), Expect = 4.8
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 6 SGRGPEGRGRGRDPHRDRTRSRSRSRSPLSPRSRRGSARERREAPERPSLEDTEPSDSGD 65
S R R R R+ R R RSRSRS R RR + R + +R ++D + SG+
Sbjct: 597 SNRNSIERERRRNRSPSRERRRSRSRS----RDRRTNRASRSRSRDRRKIDDQRGNLSGN 652
>gi|134288896 hypothetical protein LOC143684 [Homo sapiens]
Length = 339
Score = 37.4 bits (85), Expect = 0.023
Identities = 35/135 (25%), Positives = 59/135 (43%), Gaps = 26/135 (19%)
Query: 20 HRDRTRSRSRSRSPLSPRSRRG--------SARERREAPERPSLEDTEPSDSGDEMMDPA 71
H R S S LSP +G SA + E P++ +++PS+ D +
Sbjct: 178 HHHRHSSSHHKISNLSPEEEQGLWKQSHKSSATIQNETPKKKPKLESKPSNG-----DSS 232
Query: 72 SLEAEADQG------LCRQIRHQYRALINSVQQNREDILNAGDKLTEV-----LEEAN-- 118
S+ AD G L Q++ + +L +QQ + IL KLTE+ +E+N
Sbjct: 233 SINQSADSGGTDNFVLISQLKEEVMSLKRLLQQRDQTILEKDKKLTELKADFQYQESNLR 292
Query: 119 TLFNEVSRAREAVLD 133
T N + +A + ++
Sbjct: 293 TKMNSMEKAHKETVE 307
>gi|86991440 splicing factor, arginine/serine-rich 5 [Homo sapiens]
Length = 272
Score = 37.4 bits (85), Expect = 0.023
Identities = 26/86 (30%), Positives = 35/86 (40%), Gaps = 11/86 (12%)
Query: 9 GPEGRGRGRDPHRDRTRSRSRSRSPLSPRSRRGSARER-----------REAPERPSLED 57
G + R R R RTRS SRSRS RSR+ +R R R P E
Sbjct: 179 GSKRHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSPVPEK 238
Query: 58 TEPSDSGDEMMDPASLEAEADQGLCR 83
++ S PAS++ + + R
Sbjct: 239 SQKRGSSSRSKSPASVDRQRSRSRSR 264
Score = 34.3 bits (77), Expect = 0.19
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 5 SSGRGPEGRGRGRDPHRDRTRSRSRSRSPLSPRSRRGSARERREAP 50
S R R R R R R++SRS SRSP+ +S++ + R ++P
Sbjct: 206 SRSRKSYSRSRSRSRSRSRSKSRSVSRSPVPEKSQKRGSSSRSKSP 251
>gi|86991438 splicing factor, arginine/serine-rich 5 [Homo sapiens]
Length = 272
Score = 37.4 bits (85), Expect = 0.023
Identities = 26/86 (30%), Positives = 35/86 (40%), Gaps = 11/86 (12%)
Query: 9 GPEGRGRGRDPHRDRTRSRSRSRSPLSPRSRRGSARER-----------REAPERPSLED 57
G + R R R RTRS SRSRS RSR+ +R R R P E
Sbjct: 179 GSKRHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSPVPEK 238
Query: 58 TEPSDSGDEMMDPASLEAEADQGLCR 83
++ S PAS++ + + R
Sbjct: 239 SQKRGSSSRSKSPASVDRQRSRSRSR 264
Score = 34.3 bits (77), Expect = 0.19
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 5 SSGRGPEGRGRGRDPHRDRTRSRSRSRSPLSPRSRRGSARERREAP 50
S R R R R R R++SRS SRSP+ +S++ + R ++P
Sbjct: 206 SRSRKSYSRSRSRSRSRSRSKSRSVSRSPVPEKSQKRGSSSRSKSP 251
>gi|24307919 small nuclear ribonucleoprotein 27kDa (U4/U6.U5)
[Homo sapiens]
Length = 155
Score = 37.0 bits (84), Expect = 0.030
Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 11/84 (13%)
Query: 5 SSGRGPEGRGRGRDPHRDRTRSRSRSRSPLSPRSRRGSARERREAPERPS---------L 55
S+ R E R R R R+R R RSRSRSP RSR S R R PS
Sbjct: 18 STSRERERRRRERSRSRERDRRRSRSRSPHRRRSR--SPRRHRSTSPSPSRLKERRDEEK 75
Query: 56 EDTEPSDSGDEMMDPASLEAEADQ 79
++T+ + S + + LE + ++
Sbjct: 76 KETKETKSKERQITEEDLEGKTEE 99
Score = 35.8 bits (81), Expect = 0.067
Identities = 18/35 (51%), Positives = 20/35 (57%)
Query: 12 GRGRGRDPHRDRTRSRSRSRSPLSPRSRRGSARER 46
GR R R P R+R RSRS SR R R +RER
Sbjct: 2 GRSRSRSPRRERRRSRSTSRERERRRRERSRSRER 36
>gi|116089325 splicing factor, arginine/serine-rich 12 isoform a
[Homo sapiens]
Length = 624
Score = 37.0 bits (84), Expect = 0.030
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 5 SSGRGPEGRGRGRDPHRDRTRSRSRSRS-----PLSPRSRRGSARERREAPERPSLED 57
SS + R R + HR R+ +RSRSR SP +R +RERR++ R D
Sbjct: 318 SSSKSHSRRKRSQSKHRSRSHNRSRSRQKDRRRSKSPHKKRSKSRERRKSRSRSHSRD 375
Score = 32.3 bits (72), Expect = 0.74
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 13 RGRGRDPHRDRTRS--RSRSRSPLSPRSRRGSARERREAPERPSLEDTE 59
R R + PH+ R++S R +SRS R +R RE+ + ER +D E
Sbjct: 348 RRRSKSPHKKRSKSRERRKSRSRSHSRDKRKDTREKIKEKERVKEKDRE 396
Score = 32.3 bits (72), Expect = 0.74
Identities = 33/123 (26%), Positives = 44/123 (35%), Gaps = 20/123 (16%)
Query: 2 SGDSSGRGPEGRGRGRDPHRDRTRSRSRSRSPLSPRSR----------RGSARERREAPE 51
S R R R P +T R SRSP SPRSR R ERRE
Sbjct: 492 SSSRERRRRRSRSSSRSPRTSKTIKRKSSRSP-SPRSRNKKDKKREKERDHISERRERER 550
Query: 52 RPSLEDTEPSDSGDEMMDPASL-------EAEADQGLCRQI--RHQYRALINSVQQNRED 102
S+ + G E ++ S E D + +++ + R N +Q N
Sbjct: 551 STSMRKSSNDRDGKEKLEKNSTSLKEKEHNKEPDSSVSKEVDDKDAPRTEENKIQHNGNC 610
Query: 103 ILN 105
LN
Sbjct: 611 QLN 613
>gi|21040255 splicing factor, arginine/serine-rich 12 isoform b
[Homo sapiens]
Length = 508
Score = 37.0 bits (84), Expect = 0.030
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 5 SSGRGPEGRGRGRDPHRDRTRSRSRSRS-----PLSPRSRRGSARERREAPERPSLED 57
SS + R R + HR R+ +RSRSR SP +R +RERR++ R D
Sbjct: 202 SSSKSHSRRKRSQSKHRSRSHNRSRSRQKDRRRSKSPHKKRSKSRERRKSRSRSHSRD 259
Score = 32.3 bits (72), Expect = 0.74
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 13 RGRGRDPHRDRTRS--RSRSRSPLSPRSRRGSARERREAPERPSLEDTE 59
R R + PH+ R++S R +SRS R +R RE+ + ER +D E
Sbjct: 232 RRRSKSPHKKRSKSRERRKSRSRSHSRDKRKDTREKIKEKERVKEKDRE 280
Score = 32.3 bits (72), Expect = 0.74
Identities = 33/123 (26%), Positives = 44/123 (35%), Gaps = 20/123 (16%)
Query: 2 SGDSSGRGPEGRGRGRDPHRDRTRSRSRSRSPLSPRSR----------RGSARERREAPE 51
S R R R P +T R SRSP SPRSR R ERRE
Sbjct: 376 SSSRERRRRRSRSSSRSPRTSKTIKRKSSRSP-SPRSRNKKDKKREKERDHISERRERER 434
Query: 52 RPSLEDTEPSDSGDEMMDPASL-------EAEADQGLCRQI--RHQYRALINSVQQNRED 102
S+ + G E ++ S E D + +++ + R N +Q N
Sbjct: 435 STSMRKSSNDRDGKEKLEKNSTSLKEKEHNKEPDSSVSKEVDDKDAPRTEENKIQHNGNC 494
Query: 103 ILN 105
LN
Sbjct: 495 QLN 497
>gi|41327771 DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Homo
sapiens]
Length = 820
Score = 36.6 bits (83), Expect = 0.039
Identities = 20/40 (50%), Positives = 24/40 (60%)
Query: 13 RGRGRDPHRDRTRSRSRSRSPLSPRSRRGSARERREAPER 52
R R RD R +RSRSRSRS + R RR RER + +R
Sbjct: 46 RHRSRDRRRGGSRSRSRSRSKSAERERRHKERERDKERDR 85
Score = 33.1 bits (74), Expect = 0.43
Identities = 19/42 (45%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 11 EGRGRGRDPHRDRTRSRSRSRSPLSPRSRRGSARERREAPER 52
E R R R P R+R R R R SP R R S R+RR R
Sbjct: 18 EERKRSRTPDRERDRDRDRKSSPSKDRKRHRS-RDRRRGGSR 58
>gi|71044479 death inducer-obliterator 1 isoform c [Homo sapiens]
Length = 2240
Score = 36.2 bits (82), Expect = 0.051
Identities = 27/66 (40%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 4 DSSGRGPEGRGRGRDPHRDRTRSRSRSRSPLSPRSR-RGSARERR----EAPERPSLEDT 58
D S R R RD RDR RSRSR R R R RG R+ R E+ P E +
Sbjct: 2170 DRSRERSRNRERERDRRRDRDRSRSRERDRDKARDRERGRDRKDRSKSKESARDPKPEAS 2229
Query: 59 EPSDSG 64
SD+G
Sbjct: 2230 RASDAG 2235
Score = 30.0 bits (66), Expect = 3.7
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 13 RGRGRDPHRDRTRSRSRSRSPLSPRSR-RGSARERREAPERPSLED-TEPSDSGDEMMDP 70
RG+ D R+R+R+R R R R R R R+R +A +R D + S S + DP
Sbjct: 2165 RGKEWDRSRERSRNRERERDRRRDRDRSRSRERDRDKARDRERGRDRKDRSKSKESARDP 2224
Query: 71 ASLEAEA-DQGLCRQ 84
+ A D G Q
Sbjct: 2225 KPEASRASDAGTASQ 2239
>gi|4827046 U2 small nuclear RNA auxiliary factor 1-like 2 [Homo
sapiens]
Length = 482
Score = 36.2 bits (82), Expect = 0.051
Identities = 24/47 (51%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Query: 13 RGRGRDPHRDRTR-----SRSRSRSPLSPRSRRGSARERREAPERPS 54
RGR RD RDR+R SRSRSRS S RSR S+ R R S
Sbjct: 423 RGRNRDRSRDRSRGRGSRSRSRSRSRRSRRSRSQSSSRSRSRGRRRS 469
Score = 32.7 bits (73), Expect = 0.57
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 5 SSGRGPEGRGRGRDPHRDRTRSRSRSRSPLSPRSRRGSARERREAPE 51
S GRG R R R R+RS+S SRS R R G+ ++P+
Sbjct: 434 SRGRGSRSRSRSRSRRSRRSRSQSSSRSRSRGRRRSGNRDRTVQSPK 480
Score = 31.6 bits (70), Expect = 1.3
Identities = 21/42 (50%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 13 RGRGRDPHRDRTRSRSRSRSPLSPRSRRGSARERREAPERPS 54
R RGR+ RDR+R RSR R S RSR S R RR + S
Sbjct: 421 RSRGRN--RDRSRDRSRGRGSRS-RSRSRSRRSRRSRSQSSS 459
Score = 28.9 bits (63), Expect = 8.2
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 10/70 (14%)
Query: 2 SGDSSGRGPEGRGR--------GRDPHRDRTRSRSRSRSPLSPRSRRGSARERREAPERP 53
+G+S + RG+ R+ H R+R R+R RS RSR +R R + R
Sbjct: 392 NGESERKSSRHRGKKSHKRTSKSRERHNSRSRGRNRDRS--RDRSRGRGSRSRSRSRSRR 449
Query: 54 SLEDTEPSDS 63
S S S
Sbjct: 450 SRRSRSQSSS 459
>gi|224451135 splicing factor, arginine/serine-rich 15 isoform 3
[Homo sapiens]
Length = 1125
Score = 36.2 bits (82), Expect = 0.051
Identities = 22/52 (42%), Positives = 24/52 (46%)
Query: 5 SSGRGPEGRGRGRDPHRDRTRSRSRSRSPLSPRSRRGSARERREAPERPSLE 56
S R R R P R R+RS SRSR RSR S RR +P S E
Sbjct: 429 SDNRKSRSRSASRSPKRRRSRSGSRSRRSRHRRSRSRSRDRRRHSPRSRSQE 480
Score = 35.0 bits (79), Expect = 0.11
Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 5 SSGRGPEGR-----GRGRDPHRDRTRSRSRSRSPLSPRSRRGSARERREAPER 52
S+ R P+ R R R R+RSRSR R SPRSR R+R + ER
Sbjct: 438 SASRSPKRRRSRSGSRSRRSRHRRSRSRSRDRRRHSPRSRSQERRDREKERER 490
>gi|224451133 splicing factor, arginine/serine-rich 15 isoform 2
[Homo sapiens]
Length = 1132
Score = 36.2 bits (82), Expect = 0.051
Identities = 22/52 (42%), Positives = 24/52 (46%)
Query: 5 SSGRGPEGRGRGRDPHRDRTRSRSRSRSPLSPRSRRGSARERREAPERPSLE 56
S R R R P R R+RS SRSR RSR S RR +P S E
Sbjct: 414 SDNRKSRSRSASRSPKRRRSRSGSRSRRSRHRRSRSRSRDRRRHSPRSRSQE 465
Score = 35.0 bits (79), Expect = 0.11
Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 5 SSGRGPEGR-----GRGRDPHRDRTRSRSRSRSPLSPRSRRGSARERREAPER 52
S+ R P+ R R R R+RSRSR R SPRSR R+R + ER
Sbjct: 423 SASRSPKRRRSRSGSRSRRSRHRRSRSRSRDRRRHSPRSRSQERRDREKERER 475
>gi|40789229 splicing factor, arginine/serine-rich 15 isoform 1
[Homo sapiens]
Length = 1147
Score = 36.2 bits (82), Expect = 0.051
Identities = 22/52 (42%), Positives = 24/52 (46%)
Query: 5 SSGRGPEGRGRGRDPHRDRTRSRSRSRSPLSPRSRRGSARERREAPERPSLE 56
S R R R P R R+RS SRSR RSR S RR +P S E
Sbjct: 429 SDNRKSRSRSASRSPKRRRSRSGSRSRRSRHRRSRSRSRDRRRHSPRSRSQE 480
Score = 35.0 bits (79), Expect = 0.11
Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 5 SSGRGPEGR-----GRGRDPHRDRTRSRSRSRSPLSPRSRRGSARERREAPER 52
S+ R P+ R R R R+RSRSR R SPRSR R+R + ER
Sbjct: 438 SASRSPKRRRSRSGSRSRRSRHRRSRSRSRDRRRHSPRSRSQERRDREKERER 490
>gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens]
Length = 494
Score = 35.8 bits (81), Expect = 0.067
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 15 RGRDPHRDRTRSRSRSRSPLSPRSRRGSARERRE-APERPSLEDTEPSDS 63
+GR R+ +RSRSRSRS +RGS R+ + + ++ EDT+ S S
Sbjct: 355 KGRKRSREESRSRSRSRSKSERSRKRGSKRDSKAGSSKKKKKEDTDRSQS 404
Score = 34.3 bits (77), Expect = 0.19
Identities = 33/127 (25%), Positives = 49/127 (38%), Gaps = 15/127 (11%)
Query: 2 SGDSSGRGPEGRGRGRDPHRDRTRSRSRSRSPLSPRSRRGSARERREAPERPSLEDTEPS 61
S S G R R R +D+ + R RSR RSR S ER + +R S D++
Sbjct: 332 SRSRSKGGSRSRSRSRSKSKDKRKGRKRSREESRSRSRSRSKSER--SRKRGSKRDSKAG 389
Query: 62 DSGDEMMDPASLEAEADQGLCRQIRHQYRALINSVQQNREDILNAGDKLTEVLEEANTLF 121
S + + R Q R+ SV + RE + + E N
Sbjct: 390 SSKKKKKEDTD-------------RSQSRSPSRSVSKEREHAKSESSQREGRGESENAGT 436
Query: 122 NEVSRAR 128
N+ +R+R
Sbjct: 437 NQETRSR 443
Score = 32.7 bits (73), Expect = 0.57
Identities = 27/104 (25%), Positives = 43/104 (41%), Gaps = 9/104 (8%)
Query: 2 SGDSSGRGPEGRGRGRDPHRDRTRSRSRSRSPLSPRSRRGSARERREAPERPSLEDTEPS 61
SG S + R R R R R++SRSRS+S RSR + R + E+
Sbjct: 208 SGSSKSSHSKSRSRSRSGSRSRSKSRSRSQS----RSRSKKEKSRSPSKEKSRSRSHSAG 263
Query: 62 DSGDEMMDPASLEAEADQGLCR-----QIRHQYRALINSVQQNR 100
S + D A + + + + + RH+ ++ S Q R
Sbjct: 264 KSRSKSKDQAEEKIQNNDNVGKPKSRSPSRHKSKSKSRSRSQER 307
>gi|46852388 cell-cycle and apoptosis regulatory protein 1 [Homo
sapiens]
Length = 1150
Score = 35.8 bits (81), Expect = 0.067
Identities = 24/53 (45%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 6 SGRGPEG-----RGRGRDPHRDRTRSRSRSRSPLSPRSR-RGSARERREAPER 52
SGR G R R R+R R RSR RSP RSR R RER +P R
Sbjct: 302 SGRNDRGDQVPNRKDDRSRERERERRRSRERSPQRKRSRERSPRRERERSPRR 354
>gi|7656938 CREBBP/EP300 inhibitor 1 [Homo sapiens]
Length = 187
Score = 35.8 bits (81), Expect = 0.067
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 17/85 (20%)
Query: 101 EDILNAGDKLTEVLEEANTLFNEVSRAREAVLDAHFLVLASDLGIEKAKQLRSDLSSFDM 160
E + AG +++ LEEA+ +F R RE LD F Q+ + + FD
Sbjct: 115 EQLSGAGYRVSAALEEADKMF---LRTREPALDGGF-------------QMHYEKTPFDQ 158
Query: 161 LRYVETLLTHMGVNPLEAEELIRDE 185
L ++E L + M VN L EEL DE
Sbjct: 159 LAFIEELFSLMVVNRL-TEELGCDE 182
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 35.8 bits (81), Expect = 0.067
Identities = 28/71 (39%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 6 SGRGPEGRGRGRDPHRDRTRSRSR----SRSPLSP-RSRRGSARERREAPERPSLEDTEP 60
S P+ + + R P R R+RS S S+S LSP RSR GS+ E ++ P R +
Sbjct: 1559 SDSSPDSKAKTRTPLRQRSRSGSSPEVDSKSRLSPRRSRSGSSPEVKDKP-RAAPRAQSG 1617
Query: 61 SDSGDEMMDPA 71
SDS E PA
Sbjct: 1618 SDSSPEPKAPA 1628
Score = 35.0 bits (79), Expect = 0.11
Identities = 22/52 (42%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 3 GDSSGRGPEGRGRGRDPHRDRTRSRSRSRSPLSPRSRRGSARERREAPERPS 54
G S R P RGR R R R RSRSR+P RSR + RR P+
Sbjct: 560 GRSHSRSPATRGRSRSRTPAR-RGRSRSRTPARRRSRSRTPTRRRSRSRTPA 610
Score = 34.7 bits (78), Expect = 0.15
Identities = 24/57 (42%), Positives = 28/57 (49%), Gaps = 11/57 (19%)
Query: 3 GDSSGRGPEGRGRGRDPHRDR-------TRSRSRSRSPLSPRSRRGSARERREAPER 52
G S R + RGR R R R TR RSRSR+P +RRG +R R A R
Sbjct: 541 GWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTP----ARRGRSRSRTPARRR 593
Score = 34.7 bits (78), Expect = 0.15
Identities = 26/58 (44%), Positives = 30/58 (51%), Gaps = 12/58 (20%)
Query: 3 GDSSGRGP--EGRGRGRDPHRDRTRS------RSRSRSPLSPRSRRGSARERREAPER 52
G S R P GR R R P R R+RS RSRSR+P +RRG +R R A R
Sbjct: 571 GRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTP----ARRGRSRSRTPARRR 624
Score = 34.7 bits (78), Expect = 0.15
Identities = 24/53 (45%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
Query: 5 SSGRGPEGRGRGRDPHRDRTRSRSRSRSPLSPRSR-----RGSARERREAPER 52
S R P RGR R R R RSR+RSP+ RSR R S R R P R
Sbjct: 604 SRSRTPARRGRSRS--RTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPAR 654
Score = 34.7 bits (78), Expect = 0.15
Identities = 28/71 (39%), Positives = 35/71 (49%), Gaps = 13/71 (18%)
Query: 2 SGDSSGRGPEGRGRGRD--PHRDRTRS-------RSRSRSPLSPRSRRGSARERR---EA 49
SG S R P RGR R P R R+RS RS SR+P R R GS+ ER+
Sbjct: 678 SGRSRSRTPARRGRSRSRTPRRGRSRSRSLVRRGRSHSRTP-QRRGRSGSSSERKNKSRT 736
Query: 50 PERPSLEDTEP 60
+R S ++ P
Sbjct: 737 SQRRSRSNSSP 747
Score = 33.5 bits (75), Expect = 0.33
Identities = 25/60 (41%), Positives = 28/60 (46%), Gaps = 8/60 (13%)
Query: 3 GDSSGRGP-EGRGRGRDPHRDRTRS-------RSRSRSPLSPRSRRGSARERREAPERPS 54
G S R P R R R P R R+RS RSRSR+P RSR S RR P+
Sbjct: 582 GRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPA 641
Score = 32.7 bits (73), Expect = 0.57
Identities = 20/44 (45%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 3 GDSSGRGPEGRGRGRDPHRDRTRSRSRSRSPLSPRSRRGSARER 46
G S R P RGR R R RSRSR+P +RRG +R R
Sbjct: 656 GRSRSRTPARRGRSRSRTPARRSGRSRSRTP----ARRGRSRSR 695
Score = 32.0 bits (71), Expect = 0.96
Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 8 RGPEGRGRGRDPHRDR-TRSRSRSRSPLSPRSRRGSARERREAPERPSLEDTEPSDSGDE 66
R P+ RGR R P R +RSR+ R S +RRG + R A S T
Sbjct: 526 RSPQRRGRSRSPQRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSR 585
Query: 67 MMDPA 71
PA
Sbjct: 586 SRTPA 590
Score = 32.0 bits (71), Expect = 0.96
Identities = 31/96 (32%), Positives = 40/96 (41%), Gaps = 5/96 (5%)
Query: 3 GDSSGRGP-EGRGRGRDPHRDRTRSRSRSRSPLSPRS----RRGSARERREAPERPSLED 57
G S R P R R R P R R+RSRS +R RS RRG +R R A S
Sbjct: 613 GRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARRGRSRSRTPARRGRSRSR 672
Query: 58 TEPSDSGDEMMDPASLEAEADQGLCRQIRHQYRALI 93
T SG + + R+ R + R+L+
Sbjct: 673 TPARRSGRSRSRTPARRGRSRSRTPRRGRSRSRSLV 708
Score = 32.0 bits (71), Expect = 0.96
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Query: 6 SGRGPEGRGRGRDPHRDRTRSRSR------SRSPLSPRSRRGSARERREAPERPSLEDTE 59
S PE + P R+R+ S S +R+PL RSR GS++E P E +E
Sbjct: 1499 SPSSPELNNKCLTPQRERSGSESSVDQKTVARTPLGQRSRSGSSQELDVKPSASPQERSE 1558
Query: 60 PSDSGD 65
S D
Sbjct: 1559 SDSSPD 1564
Score = 30.8 bits (68), Expect = 2.1
Identities = 23/53 (43%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 3 GDSSGRGP---EGRGRGRDPHRDRTRSRSRSRSPLSPRSRRGSARERREAPER 52
G S R P GR R R P R R RSRSR+P RSR S R + R
Sbjct: 667 GRSRSRTPARRSGRSRSRTPAR---RGRSRSRTPRRGRSRSRSLVRRGRSHSR 716
Score = 30.4 bits (67), Expect = 2.8
Identities = 20/46 (43%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 8 RGPEGRGRGRDPHRDRT-RSRSRSRSPLSPRSRRGSARERREAPER 52
R P RGR R T R SRSRSP RSR R +P+R
Sbjct: 485 RSPATAKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGRSRSPQR 530
Score = 29.6 bits (65), Expect = 4.8
Identities = 27/79 (34%), Positives = 30/79 (37%), Gaps = 17/79 (21%)
Query: 3 GDSSGRGPEGRG--RGRDPHRDRTRS------------RSRSRSPLSP---RSRRGSARE 45
G S R P RG R R P R+RS R RSRSP P RSR R
Sbjct: 493 GRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGRSRSPQRRGRSRSPQRPGWSRSRNTQRRG 552
Query: 46 RREAPERPSLEDTEPSDSG 64
R + R P+ G
Sbjct: 553 RSRSARRGRSHSRSPATRG 571
Score = 29.6 bits (65), Expect = 4.8
Identities = 22/56 (39%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 5 SSGRGPEGRGRGRDPHRDRTRSRSRSRSPLSPRSRRGSARERREAPERPSLEDTEP 60
S R P R R R TR RSRSR+P P +RR S R S T P
Sbjct: 1935 SRSRTPTTRRRSRSRTPPVTRRRSRSRTP--PVTRRRSRSRTSPITRRRSRSRTSP 1988
Score = 29.3 bits (64), Expect = 6.3
Identities = 23/67 (34%), Positives = 28/67 (41%), Gaps = 11/67 (16%)
Query: 6 SGRGPEGRGRGRDPHRDRTRSRSRSRSPLSPRS-----------RRGSARERREAPERPS 54
S P R R R R RSRSR+PL PR RR +R R A + S
Sbjct: 2008 SRTSPVTRRRSRSRTPPAIRRRSRSRTPLLPRKRSRSRSPLAIRRRSRSRTPRTARGKRS 2067
Query: 55 LEDTEPS 61
L + P+
Sbjct: 2068 LTRSPPA 2074
Score = 28.9 bits (63), Expect = 8.2
Identities = 20/44 (45%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 13 RGRGRDPHRDRTRSRSRSRSPLS---PRSRRGSARERREAPERP 53
RGR R P R RSRSR+ SP RSR A RR P
Sbjct: 1839 RGRSRTPPTSRKRSRSRT-SPAPWKRSRSRASPATHRRSRSRTP 1881
Score = 28.9 bits (63), Expect = 8.2
Identities = 22/56 (39%), Positives = 23/56 (41%), Gaps = 8/56 (14%)
Query: 13 RGRGRDPHRDRTRSRSR--------SRSPLSPRSRRGSARERREAPERPSLEDTEP 60
R R R P R RSRSR SRS SP +RR S R S T P
Sbjct: 1945 RSRSRTPPVTRRRSRSRTPPVTRRRSRSRTSPITRRRSRSRTSPVTRRRSRSRTSP 2000
Score = 28.9 bits (63), Expect = 8.2
Identities = 22/56 (39%), Positives = 23/56 (41%), Gaps = 8/56 (14%)
Query: 13 RGRGRDPHRDRTRSRSR--------SRSPLSPRSRRGSARERREAPERPSLEDTEP 60
R R R P R RSRSR SRS SP +RR S R S T P
Sbjct: 1957 RSRSRTPPVTRRRSRSRTSPITRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTSP 2012
>gi|16306580 F-box and leucine-rich repeat protein 11 [Homo sapiens]
Length = 1162
Score = 35.4 bits (80), Expect = 0.087
Identities = 20/55 (36%), Positives = 28/55 (50%)
Query: 243 QEERAMPAQLRRMEESHQEATEKEVERILGLLQTYFREDPDTPMSFFDFVVDPHS 297
QE+ + AQ R+MEES +EA + +V R L P +P S + DP S
Sbjct: 677 QEDSSEKAQKRKMEESDEEAVQAKVLRPLRSCDEPLTPPPHSPTSMLQLIHDPVS 731
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.134 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,326,271
Number of Sequences: 37866
Number of extensions: 725744
Number of successful extensions: 6010
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 129
Number of HSP's that attempted gapping in prelim test: 4475
Number of HSP's gapped (non-prelim): 1205
length of query: 385
length of database: 18,247,518
effective HSP length: 104
effective length of query: 281
effective length of database: 14,309,454
effective search space: 4020956574
effective search space used: 4020956574
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.