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Search of human proteins with 8922644
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|8922644 leucine rich repeat containing 20 isoform 3 [Homo
sapiens]
(128 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|8922644 leucine rich repeat containing 20 isoform 3 [Homo sap... 248 1e-66
gi|46397369 leucine rich repeat containing 20 isoform 1 [Homo sa... 206 4e-54
gi|46397373 leucine rich repeat containing 20 isoform 2 [Homo sa... 143 3e-35
gi|239752702 PREDICTED: leucine rich repeat containing 38, parti... 35 0.012
gi|239747236 PREDICTED: leucine rich repeat containing 38 [Homo ... 35 0.012
gi|239741057 PREDICTED: leucine rich repeat containing 38 [Homo ... 35 0.012
gi|7706093 toll-like receptor 7 [Homo sapiens] 32 0.14
gi|149363685 hypothetical protein LOC23379 [Homo sapiens] 31 0.30
gi|53729363 leucine rich repeat and sterile alpha motif containi... 30 0.39
gi|53729361 leucine rich repeat and sterile alpha motif containi... 30 0.39
gi|53729359 leucine rich repeat and sterile alpha motif containi... 30 0.39
gi|194440719 chondroadherin-like [Homo sapiens] 30 0.51
gi|27363458 leucine rich repeat and fibronectin type III domain ... 30 0.67
gi|194306623 immunoglobulin superfamily containing leucine-rich ... 29 0.88
gi|194306621 immunoglobulin superfamily containing leucine-rich ... 29 0.88
gi|39930401 immunoglobulin superfamily containing leucine-rich r... 29 0.88
gi|194306618 immunoglobulin superfamily containing leucine-rich ... 29 0.88
gi|4504073 glycoprotein Ib, beta polypeptide precursor [Homo sap... 29 1.1
gi|223718151 leucine rich transmembrane and 0-methyltransferase ... 29 1.1
gi|21687175 leucine rich transmembrane and 0-methyltransferase d... 29 1.1
gi|39777604 Rho guanine nucleotide exchange factor 1 isoform 3 [... 29 1.1
gi|21389431 leucine rich repeat containing 39 [Homo sapiens] 29 1.1
gi|88702793 slit-like 2 [Homo sapiens] 29 1.1
gi|62912474 leucine-rich repeat-containing G protein-coupled rec... 29 1.1
gi|153791839 sodium channel associated protein 1 [Homo sapiens] 28 1.5
gi|61966761 leucine rich repeat containing 26 [Homo sapiens] 28 2.0
gi|62899065 centrosomal protein 72 kDa [Homo sapiens] 28 2.6
gi|4507531 toll-like receptor 3 [Homo sapiens] 27 3.3
gi|95113664 leucine rich repeat containing 1 [Homo sapiens] 27 3.3
gi|105990532 apolipoprotein B precursor [Homo sapiens] 27 5.7
>gi|8922644 leucine rich repeat containing 20 isoform 3 [Homo
sapiens]
Length = 128
Score = 248 bits (632), Expect = 1e-66
Identities = 128/128 (100%), Positives = 128/128 (100%)
Query: 1 MLKKMGEAVARVARKVNETVESGSDTLDLAECKLVSFPIGIYKVLRNVSGQIHLITLANN 60
MLKKMGEAVARVARKVNETVESGSDTLDLAECKLVSFPIGIYKVLRNVSGQIHLITLANN
Sbjct: 1 MLKKMGEAVARVARKVNETVESGSDTLDLAECKLVSFPIGIYKVLRNVSGQIHLITLANN 60
Query: 61 ELKSLTSKFMTTFSQLRDVPVEKLAAMPALRSINLRFNPLNAEVRVIAPPLIKFDMLMSP 120
ELKSLTSKFMTTFSQLRDVPVEKLAAMPALRSINLRFNPLNAEVRVIAPPLIKFDMLMSP
Sbjct: 61 ELKSLTSKFMTTFSQLRDVPVEKLAAMPALRSINLRFNPLNAEVRVIAPPLIKFDMLMSP 120
Query: 121 EGARAPLP 128
EGARAPLP
Sbjct: 121 EGARAPLP 128
>gi|46397369 leucine rich repeat containing 20 isoform 1 [Homo
sapiens]
Length = 184
Score = 206 bits (524), Expect = 4e-54
Identities = 121/184 (65%), Positives = 126/184 (68%), Gaps = 56/184 (30%)
Query: 1 MLKKMGEAVARVARKVNETVESGSDTLDLAECKLVSFPIGIYKVLRNVSGQIHLITLANN 60
MLKKMGEAVARVARKVNETVESGSDTLDLAECKLVSFPIGIYKVLRNVSGQIHLITLANN
Sbjct: 1 MLKKMGEAVARVARKVNETVESGSDTLDLAECKLVSFPIGIYKVLRNVSGQIHLITLANN 60
Query: 61 ELKSLTSKFMTTFSQLRDVPV--------------------------------EKLAAMP 88
ELKSLTSKFMTTFSQLR++ + E+L A+P
Sbjct: 61 ELKSLTSKFMTTFSQLRELHLEGNFLHRLPSEVSALQHLKAIDLSRNQFQDFPEQLTALP 120
Query: 89 ------------------------ALRSINLRFNPLNAEVRVIAPPLIKFDMLMSPEGAR 124
ALRSINLRFNPLNAEVRVIAPPLIKFDMLMSPEGAR
Sbjct: 121 ALETINLEENEIVDVPVEKLAAMPALRSINLRFNPLNAEVRVIAPPLIKFDMLMSPEGAR 180
Query: 125 APLP 128
APLP
Sbjct: 181 APLP 184
>gi|46397373 leucine rich repeat containing 20 isoform 2 [Homo
sapiens]
Length = 134
Score = 143 bits (361), Expect = 3e-35
Identities = 87/140 (62%), Positives = 99/140 (70%), Gaps = 18/140 (12%)
Query: 1 MLKKMGEAVARVARKVNETVESGSDTLDL-AECKLVSFPIGIYKVLRNVSGQIHL--ITL 57
MLKKMGEAVARVARKVNETVESGSDTL+L E ++++ VS HL I L
Sbjct: 1 MLKKMGEAVARVARKVNETVESGSDTLELHLEGNF------LHRLPSEVSALQHLKAIDL 54
Query: 58 ANNELKSLTSKFMTT---------FSQLRDVPVEKLAAMPALRSINLRFNPLNAEVRVIA 108
+ N+ + + +++ DVPVEKLAAMPALRSINLRFNPLNAEVRVIA
Sbjct: 55 SRNQFQDFPEQLTALPALETINLEENEIVDVPVEKLAAMPALRSINLRFNPLNAEVRVIA 114
Query: 109 PPLIKFDMLMSPEGARAPLP 128
PPLIKFDMLMSPEGARAPLP
Sbjct: 115 PPLIKFDMLMSPEGARAPLP 134
>gi|239752702 PREDICTED: leucine rich repeat containing 38, partial
[Homo sapiens]
Length = 254
Score = 35.4 bits (80), Expect = 0.012
Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 17/99 (17%)
Query: 14 RKVNETVESGSDTL---DLAECKLVSFPIGIYKVLRNVSGQIHLITLANNELKSLTSKFM 70
R + E SGS L DL+ L G ++ +G++ ++LANN L +
Sbjct: 53 RSLEEGTFSGSAKLVFLDLSYNNLTQLGAGAFRS----AGRLVKLSLANNNLVGVHEDAF 108
Query: 71 TTF----------SQLRDVPVEKLAAMPALRSINLRFNP 99
T + LR + V LAA+PALRS+ L NP
Sbjct: 109 ETLESLQVLELNDNNLRSLSVAALAALPALRSLRLDGNP 147
>gi|239747236 PREDICTED: leucine rich repeat containing 38 [Homo
sapiens]
Length = 408
Score = 35.4 bits (80), Expect = 0.012
Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 17/99 (17%)
Query: 14 RKVNETVESGSDTL---DLAECKLVSFPIGIYKVLRNVSGQIHLITLANNELKSLTSKFM 70
R + E SGS L DL+ L G ++ +G++ ++LANN L +
Sbjct: 207 RSLEEGTFSGSAKLVFLDLSYNNLTQLGAGAFRS----AGRLVKLSLANNNLVGVHEDAF 262
Query: 71 TTF----------SQLRDVPVEKLAAMPALRSINLRFNP 99
T + LR + V LAA+PALRS+ L NP
Sbjct: 263 ETLESLQVLELNDNNLRSLSVAALAALPALRSLRLDGNP 301
>gi|239741057 PREDICTED: leucine rich repeat containing 38 [Homo
sapiens]
Length = 408
Score = 35.4 bits (80), Expect = 0.012
Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 17/99 (17%)
Query: 14 RKVNETVESGSDTL---DLAECKLVSFPIGIYKVLRNVSGQIHLITLANNELKSLTSKFM 70
R + E SGS L DL+ L G ++ +G++ ++LANN L +
Sbjct: 207 RSLEEGTFSGSAKLVFLDLSYNNLTQLGAGAFRS----AGRLVKLSLANNNLVGVHEDAF 262
Query: 71 TTF----------SQLRDVPVEKLAAMPALRSINLRFNP 99
T + LR + V LAA+PALRS+ L NP
Sbjct: 263 ETLESLQVLELNDNNLRSLSVAALAALPALRSLRLDGNP 301
>gi|7706093 toll-like receptor 7 [Homo sapiens]
Length = 1049
Score = 32.0 bits (71), Expect = 0.14
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 25 DTLDLAECKLVSFPIGIYKVLRNVSGQIHLITLANNELKSLTSKFMTTFSQLR 77
+TLDL+ +L + P + L N S + + L NN+++SLT F+ QLR
Sbjct: 702 ETLDLSHNQLTTVP----ERLSNCSRSLKNLILKNNQIRSLTKYFLQDAFQLR 750
>gi|149363685 hypothetical protein LOC23379 [Homo sapiens]
Length = 2266
Score = 30.8 bits (68), Expect = 0.30
Identities = 24/101 (23%), Positives = 47/101 (46%), Gaps = 2/101 (1%)
Query: 8 AVARVARKVNETVESGSDTLDLAECKLVSFPIGIYKVLRN--VSGQIHLITLANNELKSL 65
AV+++ ETVES + A K+ F + V+R+ G I + ++ K +
Sbjct: 1896 AVSQLPLSPKETVESHDKAIANALKKIAEFSFDLLPVIRSHVYVGNISKKPVMRDQEKEV 1955
Query: 66 TSKFMTTFSQLRDVPVEKLAAMPALRSINLRFNPLNAEVRV 106
+F TT L + + + + ++ I++ N ++A RV
Sbjct: 1956 VYEFSTTKKHLAECLLHSILSELKIQKISMDHNYIHALCRV 1996
>gi|53729363 leucine rich repeat and sterile alpha motif containing
1 [Homo sapiens]
Length = 723
Score = 30.4 bits (67), Expect = 0.39
Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 14/110 (12%)
Query: 3 KKMGEAVARVARKVNETVESGSDT-LDLAECKLVSFPIGIYKVLRNVSGQIHLITLANNE 61
K EA R+ ++ E+G+D LD+++C+L P G + + + Q ++ + N
Sbjct: 9 KPSEEARKRLEYQMCLAKEAGADDILDISKCELSEIPFGAFATCKVL--QKKVLIVHTNH 66
Query: 62 LKSLTSKFMTTFS----QLRDVPVEKLAAMP-------ALRSINLRFNPL 100
L SL K + S ++ D+ +L A+P AL+ +N+ N L
Sbjct: 67 LTSLLPKSCSLLSLATIKVLDLHDNQLTALPDDLGQLTALQVLNVERNQL 116
>gi|53729361 leucine rich repeat and sterile alpha motif containing
1 [Homo sapiens]
Length = 723
Score = 30.4 bits (67), Expect = 0.39
Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 14/110 (12%)
Query: 3 KKMGEAVARVARKVNETVESGSDT-LDLAECKLVSFPIGIYKVLRNVSGQIHLITLANNE 61
K EA R+ ++ E+G+D LD+++C+L P G + + + Q ++ + N
Sbjct: 9 KPSEEARKRLEYQMCLAKEAGADDILDISKCELSEIPFGAFATCKVL--QKKVLIVHTNH 66
Query: 62 LKSLTSKFMTTFS----QLRDVPVEKLAAMP-------ALRSINLRFNPL 100
L SL K + S ++ D+ +L A+P AL+ +N+ N L
Sbjct: 67 LTSLLPKSCSLLSLATIKVLDLHDNQLTALPDDLGQLTALQVLNVERNQL 116
>gi|53729359 leucine rich repeat and sterile alpha motif containing
1 [Homo sapiens]
Length = 723
Score = 30.4 bits (67), Expect = 0.39
Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 14/110 (12%)
Query: 3 KKMGEAVARVARKVNETVESGSDT-LDLAECKLVSFPIGIYKVLRNVSGQIHLITLANNE 61
K EA R+ ++ E+G+D LD+++C+L P G + + + Q ++ + N
Sbjct: 9 KPSEEARKRLEYQMCLAKEAGADDILDISKCELSEIPFGAFATCKVL--QKKVLIVHTNH 66
Query: 62 LKSLTSKFMTTFS----QLRDVPVEKLAAMP-------ALRSINLRFNPL 100
L SL K + S ++ D+ +L A+P AL+ +N+ N L
Sbjct: 67 LTSLLPKSCSLLSLATIKVLDLHDNQLTALPDDLGQLTALQVLNVERNQL 116
>gi|194440719 chondroadherin-like [Homo sapiens]
Length = 762
Score = 30.0 bits (66), Expect = 0.51
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 74 SQLRDVPVEKLAAMPALRSINLRFNPLNA 102
+QLR+VP L +PAL + L NPL A
Sbjct: 579 NQLREVPTGALEGLPALLELQLSGNPLRA 607
>gi|27363458 leucine rich repeat and fibronectin type III domain
containing 4 [Homo sapiens]
Length = 635
Score = 29.6 bits (65), Expect = 0.67
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 72 TFSQLRDVPVEKLAAMPALRSINLRFNPLNA 102
+++ LR VP + AMPAL ++NL N ++A
Sbjct: 153 SYNNLRQVPWAGIGAMPALHTLNLDHNLIDA 183
>gi|194306623 immunoglobulin superfamily containing leucine-rich
repeat 2 [Homo sapiens]
Length = 745
Score = 29.3 bits (64), Expect = 0.88
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 29/98 (29%)
Query: 19 TVESGS-------DTLDLAECKLVSFPIGIYKVLRNVSGQIHLITLANNELKSLTSKFMT 71
TVE G+ LDL+ + SFP + LRN+S + L+ + +N L SL
Sbjct: 89 TVEPGALAVLSQLKNLDLSHNFISSFP---WSDLRNLSA-LQLLKMNHNRLGSL------ 138
Query: 72 TFSQLRDVPVEKLAAMPALRSINLRFNPLNAEVRVIAP 109
P + L A+P LRS+ + N +R +AP
Sbjct: 139 --------PRDALGALPDLRSLRIN----NNRLRTLAP 164
>gi|194306621 immunoglobulin superfamily containing leucine-rich
repeat 2 [Homo sapiens]
Length = 745
Score = 29.3 bits (64), Expect = 0.88
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 29/98 (29%)
Query: 19 TVESGS-------DTLDLAECKLVSFPIGIYKVLRNVSGQIHLITLANNELKSLTSKFMT 71
TVE G+ LDL+ + SFP + LRN+S + L+ + +N L SL
Sbjct: 89 TVEPGALAVLSQLKNLDLSHNFISSFP---WSDLRNLSA-LQLLKMNHNRLGSL------ 138
Query: 72 TFSQLRDVPVEKLAAMPALRSINLRFNPLNAEVRVIAP 109
P + L A+P LRS+ + N +R +AP
Sbjct: 139 --------PRDALGALPDLRSLRIN----NNRLRTLAP 164
>gi|39930401 immunoglobulin superfamily containing leucine-rich
repeat 2 [Homo sapiens]
Length = 745
Score = 29.3 bits (64), Expect = 0.88
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 29/98 (29%)
Query: 19 TVESGS-------DTLDLAECKLVSFPIGIYKVLRNVSGQIHLITLANNELKSLTSKFMT 71
TVE G+ LDL+ + SFP + LRN+S + L+ + +N L SL
Sbjct: 89 TVEPGALAVLSQLKNLDLSHNFISSFP---WSDLRNLSA-LQLLKMNHNRLGSL------ 138
Query: 72 TFSQLRDVPVEKLAAMPALRSINLRFNPLNAEVRVIAP 109
P + L A+P LRS+ + N +R +AP
Sbjct: 139 --------PRDALGALPDLRSLRIN----NNRLRTLAP 164
>gi|194306618 immunoglobulin superfamily containing leucine-rich
repeat 2 [Homo sapiens]
Length = 745
Score = 29.3 bits (64), Expect = 0.88
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 29/98 (29%)
Query: 19 TVESGS-------DTLDLAECKLVSFPIGIYKVLRNVSGQIHLITLANNELKSLTSKFMT 71
TVE G+ LDL+ + SFP + LRN+S + L+ + +N L SL
Sbjct: 89 TVEPGALAVLSQLKNLDLSHNFISSFP---WSDLRNLSA-LQLLKMNHNRLGSL------ 138
Query: 72 TFSQLRDVPVEKLAAMPALRSINLRFNPLNAEVRVIAP 109
P + L A+P LRS+ + N +R +AP
Sbjct: 139 --------PRDALGALPDLRSLRIN----NNRLRTLAP 164
>gi|4504073 glycoprotein Ib, beta polypeptide precursor [Homo
sapiens]
Length = 206
Score = 28.9 bits (63), Expect = 1.1
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 66 TSKFMTTFSQLRDVPVEKLAAMPALRSINLRFNPLNAEVRVI 107
T++ + T + L +P L A+PALR+ +L NP + R++
Sbjct: 57 TTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLV 98
>gi|223718151 leucine rich transmembrane and 0-methyltransferase
domain containing isoform 2 [Homo sapiens]
Length = 158
Score = 28.9 bits (63), Expect = 1.1
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 12/60 (20%)
Query: 55 ITLANNELKSLTSKFMTTFSQL-----------RDVPVEKLAAMPALRSINLRFNPLNAE 103
I L+ N+L S+ +TTF L R V KLA +P LRS+ L NP+ E
Sbjct: 84 IDLSFNDLTSI-DPVLTTFFNLSVLYLHGNSIQRLGEVNKLAVLPRLRSLTLHGNPMEEE 142
>gi|21687175 leucine rich transmembrane and 0-methyltransferase
domain containing isoform 1 [Homo sapiens]
Length = 192
Score = 28.9 bits (63), Expect = 1.1
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 12/60 (20%)
Query: 55 ITLANNELKSLTSKFMTTFSQL-----------RDVPVEKLAAMPALRSINLRFNPLNAE 103
I L+ N+L S+ +TTF L R V KLA +P LRS+ L NP+ E
Sbjct: 84 IDLSFNDLTSI-DPVLTTFFNLSVLYLHGNSIQRLGEVNKLAVLPRLRSLTLHGNPMEEE 142
>gi|39777604 Rho guanine nucleotide exchange factor 1 isoform 3
[Homo sapiens]
Length = 879
Score = 28.9 bits (63), Expect = 1.1
Identities = 16/57 (28%), Positives = 28/57 (49%)
Query: 60 NELKSLTSKFMTTFSQLRDVPVEKLAAMPALRSINLRFNPLNAEVRVIAPPLIKFDM 116
NEL++ + + + F L V M L+ + L+F P +RV PP + F++
Sbjct: 33 NELETNSEEQNSQFQSLEQVKRRPAHLMALLQHVALQFEPGPLVLRVPVPPNVAFEL 89
>gi|21389431 leucine rich repeat containing 39 [Homo sapiens]
Length = 335
Score = 28.9 bits (63), Expect = 1.1
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 17/93 (18%)
Query: 27 LDLAECKLVSFPIGIYKVLRNVSGQIHLITLANNELKSLTSKF---------MTTFSQLR 77
LD+ KL P I ++ +H + L NE+ L + + ++L+
Sbjct: 204 LDMGSNKLEQLPDTIERMQN-----LHTLWLQRNEITCLPQTISNMKNLGTLVLSNNKLQ 258
Query: 78 DVPVEKLAAMPALRSINLRFNPLNAEVRVIAPP 110
D+PV + M LR +N R NPL +++V PP
Sbjct: 259 DIPV-CMEEMANLRFVNFRDNPL--KLKVSLPP 288
>gi|88702793 slit-like 2 [Homo sapiens]
Length = 673
Score = 28.9 bits (63), Expect = 1.1
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 7/55 (12%)
Query: 23 GSDTLDLAECKLVSFPIGIYKVLRNVSGQIHLITLANNELKSLTSKFMTTFSQLR 77
G LDL++ ++ S P G+++ L N+S + L N L +T++ TF LR
Sbjct: 77 GLQLLDLSQNQIASLPSGVFQPLANLSN----LDLTANRLHEITNE---TFRGLR 124
>gi|62912474 leucine-rich repeat-containing G protein-coupled
receptor 6 isoform 3 [Homo sapiens]
Length = 828
Score = 28.9 bits (63), Expect = 1.1
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Query: 28 DLAECKLVSFPIGIYKVLR-----NVSGQIHLITLANNELKSLTSK--FMTTFSQLRDVP 80
DL+ L G++ LR +SG HL + L S M +QL +P
Sbjct: 29 DLSMNNLTELQPGLFHHLRFLEELRLSGN-HLSHIPGQAFSGLYSLKILMLQNNQLGGIP 87
Query: 81 VEKLAAMPALRSINLRFNPL 100
E L +P+L+S++L +N L
Sbjct: 88 AEALWELPSLQSLDLNYNKL 107
>gi|153791839 sodium channel associated protein 1 [Homo sapiens]
Length = 688
Score = 28.5 bits (62), Expect = 1.5
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 12/83 (14%)
Query: 3 KKMGEAVARVARKVNETVESGSDTLDLAECKLVSFPIG------IY---KVLRNVSGQIH 53
K++GE ++ + E S+ D E KL +FP+G IY + +RN+ Q+
Sbjct: 79 KQVGEMKLQLENVIKENERLHSELKDAVEKKLEAFPLGTEVGTDIYADDETVRNLQEQLQ 138
Query: 54 LITLANNELKSLTSKFMTTFSQL 76
LAN E + T +L
Sbjct: 139 ---LANQEKTQAVELWQTVSQEL 158
>gi|61966761 leucine rich repeat containing 26 [Homo sapiens]
Length = 334
Score = 28.1 bits (61), Expect = 2.0
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 18/96 (18%)
Query: 27 LDLAECKLVSFPIGIYKVLRNVSGQIHLITLANNELKSLTSKFMTTFSQLRDVPVE---- 82
LDL E L S + + L G + L+ L+ N+L++L LR++ +
Sbjct: 100 LDLRENGLHSVHVRAFWGL----GALQLLDLSANQLEALAPGTFAPLRALRNLSLAGNRL 155
Query: 83 ------KLAAMPALRSINLRFNPLNAEVRVIAPPLI 112
L A+P LRS++L+ N E+ +AP L+
Sbjct: 156 ARLEPAALGALPLLRSLSLQDN----ELAALAPGLL 187
>gi|62899065 centrosomal protein 72 kDa [Homo sapiens]
Length = 647
Score = 27.7 bits (60), Expect = 2.6
Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 14/97 (14%)
Query: 28 DLAECKLVSFPIGIYKVLRNVSGQIHLITLANNELKSLTSKFMTTFSQLRDVPVEKLAAM 87
DLAE + +S P G Y+ IT + L SLT S+ V +E + +
Sbjct: 26 DLAELQSLSIP-GTYQ---------EKITHLGHSLMSLTGLKSLDLSRNSLVSLEGIQYL 75
Query: 88 PALRSINLRFNPLNAEVRVI----APPLIKFDMLMSP 120
AL S+NL +N +++ V L+ D ++P
Sbjct: 76 TALESLNLYYNCISSLAEVFRLHALTELVDVDFRLNP 112
>gi|4507531 toll-like receptor 3 [Homo sapiens]
Length = 904
Score = 27.3 bits (59), Expect = 3.3
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 10/60 (16%)
Query: 52 IHLITLANNELKSLTSKFMTTFSQLRDVPV----------EKLAAMPALRSINLRFNPLN 101
I ++ L +N+L+ L + T +SQL + V E +P L+ +NL+ N L+
Sbjct: 53 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 112
>gi|95113664 leucine rich repeat containing 1 [Homo sapiens]
Length = 524
Score = 27.3 bits (59), Expect = 3.3
Identities = 23/104 (22%), Positives = 45/104 (43%), Gaps = 23/104 (22%)
Query: 25 DTLDLAECKLVSFPIGIYKVLRNVSGQIHLITLANNELKSLTSKFMTTFSQLRDVPVEKL 84
+++D C LV P IY+ R++ + + +QLR++P E+
Sbjct: 15 ESIDKRHCSLVYVPEEIYRYARSL------------------EELLLDANQLRELP-EQF 55
Query: 85 AAMPALRSINLRFNPLNAEVRVIAPPLIKFDMLMSPEGARAPLP 128
+ LR + L N E++ + P + F L+ + +R +P
Sbjct: 56 FQLVKLRKLGLSDN----EIQRLPPEIANFMQLVELDVSRNEIP 95
>gi|105990532 apolipoprotein B precursor [Homo sapiens]
Length = 4563
Score = 26.6 bits (57), Expect = 5.7
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 27 LDLAECKLVSFPIGIYKVLRNVSGQIHLITLANNELKSLTSKFMTTFSQLRD 78
L + CKL I IYK LR S ++L TL E+K +T +SQ D
Sbjct: 3756 LQVPSCKLDFREIQIYKKLRTSSFALNLPTLP--EVKFPEVDVLTKYSQPED 3805
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.134 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,911,037
Number of Sequences: 37866
Number of extensions: 133803
Number of successful extensions: 430
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 400
Number of HSP's gapped (non-prelim): 55
length of query: 128
length of database: 18,247,518
effective HSP length: 90
effective length of query: 38
effective length of database: 14,839,578
effective search space: 563903964
effective search space used: 563903964
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.