Guide to the Human Genome
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Name: C9orf3 Sequence: fasta or formatted (720aa) NCBI GI: 24432058
Description:

aminopeptidase O

Referenced in:

Aminopeptidases
MicroRNAs

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         48           3
 C cysteine            3.1         22           2
 D aspartate           5.0         36           2
 E glutamate           8.2         59           2
 F phenylalanine       4.6         33           1
 G glycine             4.6         33           1
 H histidine           2.9         21           1
 I isoleucine          3.6         26           2
 K lysine              5.0         36           2
 L leucine             9.6         69           3
 M methionine          2.5         18           1
 N asparagine          3.1         22           2
 P proline             5.1         37           2
 Q glutamine           5.1         37           3
 R arginine            6.5         47           2
 S serine              7.8         56           3
 T threonine           5.7         41           2
 V valine              6.7         48           2
 W tryptophan          1.7         12           1
 Y tyrosine            2.6         19           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   aminopeptidase O 
RNPEP                 0.052   arginyl aminopeptidase 
RNPEPL1               0.030   arginyl aminopeptidase (aminopeptidase B)-like 1 [Ho...
LTA4H                 0.017   leukotriene A4 hydrolase 
AK7                   0.009   adenylate kinase 7 
PLEC1                 0.006   plectin 1 isoform 11 
PLEC1                 0.006   plectin 1 isoform 10 
PLEC1                 0.006   plectin 1 isoform 8 
PLEC1                 0.006   plectin 1 isoform 7 
PLEC1                 0.006   plectin 1 isoform 6 
PLEC1                 0.006   plectin 1 isoform 3 
PLEC1                 0.006   plectin 1 isoform 2 
PLEC1                 0.006   plectin 1 isoform 1 
PLEKHG4B              0.006   pleckstrin homology domain containing, family G (wi...
TAF2                  0.006   TBP-associated factor 2 
TCHH                  0.006   trichohyalin 
ZRSR2                 0.005   U2 small nuclear RNA auxiliary factor 1-like 2 
CDH26                 0.005   cadherin-like 26 isoform a 
LVRN                  0.005   laeverin 
C2orf21               0.004   chromosome 2 open reading frame 21 isoform 1 
CCDC91                0.003   GGA binding partner 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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