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Search of human proteins with 89030143
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|89030143 PREDICTED: hypothetical protein [Homo sapiens]
(166 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|89030143 PREDICTED: hypothetical protein [Homo sapiens] 340 3e-94
gi|122937468 hypothetical LOC642968 [Homo sapiens] 336 6e-93
gi|28316806 hypothetical protein MGC16664 [Homo sapiens] 111 2e-25
gi|4503173 coxsackie virus and adenovirus receptor precursor [Ho... 32 0.25
gi|154816178 chemokine (C-X-C motif) ligand 16 [Homo sapiens] 32 0.33
gi|154816176 chemokine (C-X-C motif) ligand 16 [Homo sapiens] 32 0.33
gi|75677345 transmembrane protein 98 [Homo sapiens] 30 1.2
gi|75677343 transmembrane protein 98 [Homo sapiens] 30 1.2
gi|4826964 UV excision repair protein RAD23 homolog A [Homo sapi... 29 1.6
gi|120953300 leucine-rich repeats and IQ motif containing 1 isof... 29 1.6
gi|4506309 protein tyrosine phosphatase, receptor type, D isofor... 29 2.1
gi|18860890 protein tyrosine phosphatase, receptor type, D isofo... 29 2.1
gi|18860892 protein tyrosine phosphatase, receptor type, D isofo... 29 2.1
gi|18860894 protein tyrosine phosphatase, receptor type, D isofo... 29 2.1
gi|41349474 PR domain containing 4 [Homo sapiens] 29 2.1
gi|75677612 leucine rich repeat containing 37, member A3 [Homo s... 29 2.1
gi|239740953 PREDICTED: similar to c114 SLIT-like testicular pro... 28 2.8
gi|116325993 c114 SLIT-like testicular protein [Homo sapiens] 28 2.8
gi|110665701 leucine rich repeat containing 37A [Homo sapiens] 28 2.8
gi|62865876 immunoglobulin superfamily, member 11 isoform b [Hom... 28 2.8
gi|62865874 immunoglobulin superfamily, member 11 isoform a [Hom... 28 2.8
gi|222831660 family with sequence similarity 171, member A2 [Hom... 28 3.6
gi|104487611 protein tyrosine phosphatase, receptor type, sigma ... 28 3.6
gi|104487297 protein tyrosine phosphatase, receptor type, sigma ... 28 3.6
gi|104487295 protein tyrosine phosphatase, receptor type, sigma ... 28 3.6
gi|169204830 PREDICTED: hypothetical protein LOC196446 [Homo sap... 28 3.6
gi|239750374 PREDICTED: chromosome 12 open reading frame 28 [Hom... 28 3.6
gi|169204180 PREDICTED: hypothetical protein LOC196446 [Homo sap... 28 3.6
gi|41872673 NIMA-related kinase 1 [Homo sapiens] 28 3.6
gi|148727368 bromodomain and PHD finger containing, 3 [Homo sapi... 28 3.6
>gi|89030143 PREDICTED: hypothetical protein [Homo sapiens]
Length = 166
Score = 340 bits (872), Expect = 3e-94
Identities = 166/166 (100%), Positives = 166/166 (100%)
Query: 1 MTAGTVVITGGILATVILLCIIAVLCYCRLQYYCCKKDESEEDEEEPDFAVHSHLPPLHS 60
MTAGTVVITGGILATVILLCIIAVLCYCRLQYYCCKKDESEEDEEEPDFAVHSHLPPLHS
Sbjct: 1 MTAGTVVITGGILATVILLCIIAVLCYCRLQYYCCKKDESEEDEEEPDFAVHSHLPPLHS 60
Query: 61 NRNLVLTNGPALYPTASTSFSQKSPQARALCRSCSHCEPPTFFLQEPPEEEEDVLNGGER 120
NRNLVLTNGPALYPTASTSFSQKSPQARALCRSCSHCEPPTFFLQEPPEEEEDVLNGGER
Sbjct: 61 NRNLVLTNGPALYPTASTSFSQKSPQARALCRSCSHCEPPTFFLQEPPEEEEDVLNGGER 120
Query: 121 VLYKSVSQEDVELPRGAFGGLQALNPNRLSAMREAFARSRSISTDV 166
VLYKSVSQEDVELPRGAFGGLQALNPNRLSAMREAFARSRSISTDV
Sbjct: 121 VLYKSVSQEDVELPRGAFGGLQALNPNRLSAMREAFARSRSISTDV 166
>gi|122937468 hypothetical LOC642968 [Homo sapiens]
Length = 166
Score = 336 bits (861), Expect = 6e-93
Identities = 164/166 (98%), Positives = 164/166 (98%)
Query: 1 MTAGTVVITGGILATVILLCIIAVLCYCRLQYYCCKKDESEEDEEEPDFAVHSHLPPLHS 60
MTAGTVVITGGILATVILLCIIAVLCYCRLQYYCCKKDESEEDEEEPDFAVHSHLPPLHS
Sbjct: 1 MTAGTVVITGGILATVILLCIIAVLCYCRLQYYCCKKDESEEDEEEPDFAVHSHLPPLHS 60
Query: 61 NRNLVLTNGPALYPTASTSFSQKSPQARALCRSCSHCEPPTFFLQEPPEEEEDVLNGGER 120
NRNLVLTNGPALYPTASTSFSQKSPQARALCRSCSHCEPPTFFLQEPPEEEEDVLNGGER
Sbjct: 61 NRNLVLTNGPALYPTASTSFSQKSPQARALCRSCSHCEPPTFFLQEPPEEEEDVLNGGER 120
Query: 121 VLYKSVSQEDVELPRGAFGGLQALNPNRLSAMREAFARSRSISTDV 166
VLYKSVSQEDVELP G FGGLQALNPNRLSAMREAFARSRSISTDV
Sbjct: 121 VLYKSVSQEDVELPPGGFGGLQALNPNRLSAMREAFARSRSISTDV 166
>gi|28316806 hypothetical protein MGC16664 [Homo sapiens]
Length = 167
Score = 111 bits (278), Expect = 2e-25
Identities = 72/170 (42%), Positives = 89/170 (52%), Gaps = 7/170 (4%)
Query: 1 MTAGTVVITGGILATVILLCIIAVLCYCRLQYYCCKKD----ESEEDEEEPDFAVHSHLP 56
MTAGTVVITGGILATVILLCIIAVLCYCRLQYYCCKK EE+E E D H P
Sbjct: 1 MTAGTVVITGGILATVILLCIIAVLCYCRLQYYCCKKSGTEVADEEEEREHDLPTHPRGP 60
Query: 57 PLHSNRNLVLTNGPALYPTASTSFSQKSPQARALCRSCSHCEPPTFFLQEPPEEEEDVLN 116
++ + L +L P S SQ A + C +CS P F+++
Sbjct: 61 TCNACSSQALDGRGSLAPLTSEPCSQPCGVAASHCTTCSPYSSP-FYIRTADMVPNG--G 117
Query: 117 GGERVLYKSVSQEDVELPRGAFGGLQALNPNRLSAMREAFARSRSISTDV 166
GGER+ + ++ P Q+ + REAF R+ISTDV
Sbjct: 118 GGERLSFAPTYYKEGGPPSLKLAAPQSYPVTWPGSGREAFTNPRAISTDV 167
>gi|4503173 coxsackie virus and adenovirus receptor precursor [Homo
sapiens]
Length = 365
Score = 32.0 bits (71), Expect = 0.25
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 7 VITGGILATVILLCIIAVLCYCRLQYYCCKKDESEEDEEEPDFAVHSHLPP 57
+I G I+ T++ L +I ++ +C C KK E+ E+E + +PP
Sbjct: 238 LIAGAIIGTLLALALIGLIIFC-----CRKKRREEKYEKEVHHDIREDVPP 283
>gi|154816178 chemokine (C-X-C motif) ligand 16 [Homo sapiens]
Length = 273
Score = 31.6 bits (70), Expect = 0.33
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 14 ATVILLCIIAVLCY--CRLQYYCCKKDESEEDEEEPDFAVH 52
ATV +LC++A++ L Y CK+ + + PD VH
Sbjct: 223 ATVPVLCLLAIIFILTAALSYVLCKRRRGQSPQSSPDLPVH 263
>gi|154816176 chemokine (C-X-C motif) ligand 16 [Homo sapiens]
Length = 273
Score = 31.6 bits (70), Expect = 0.33
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 14 ATVILLCIIAVLCY--CRLQYYCCKKDESEEDEEEPDFAVH 52
ATV +LC++A++ L Y CK+ + + PD VH
Sbjct: 223 ATVPVLCLLAIIFILTAALSYVLCKRRRGQSPQSSPDLPVH 263
>gi|75677345 transmembrane protein 98 [Homo sapiens]
Length = 226
Score = 29.6 bits (65), Expect = 1.2
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 6 VVITGGILATVILLCIIAVLCYCRLQYYCCKKDESEEDEEEP 47
V++ G+LAT+ L A++ CR Q YC +D + + +P
Sbjct: 5 VIVAIGVLATIFLASFAALVLVCR-QRYCRPRDLLQRYDSKP 45
>gi|75677343 transmembrane protein 98 [Homo sapiens]
Length = 226
Score = 29.6 bits (65), Expect = 1.2
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 6 VVITGGILATVILLCIIAVLCYCRLQYYCCKKDESEEDEEEP 47
V++ G+LAT+ L A++ CR Q YC +D + + +P
Sbjct: 5 VIVAIGVLATIFLASFAALVLVCR-QRYCRPRDLLQRYDSKP 45
>gi|4826964 UV excision repair protein RAD23 homolog A [Homo
sapiens]
Length = 363
Score = 29.3 bits (64), Expect = 1.6
Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Query: 57 PLHSNRNLVLTNGPALYPTASTSFSQKSPQARALCRSCSHCEPPTFFLQEPPEEEEDV 114
P N V+ PAL P Q++PQ L + H E L EPP E D+
Sbjct: 239 PQFQNMRQVIQQNPALLPALLQQLGQENPQ--LLQQISRHQEQFIQMLNEPPGELADI 294
>gi|120953300 leucine-rich repeats and IQ motif containing 1 isoform 1
[Homo sapiens]
Length = 1722
Score = 29.3 bits (64), Expect = 1.6
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 108 PEEEEDVLNGGE-RVLYKSVSQEDVELPRGAFGGLQALNPNR 148
PE + DVLNGG +++ + VS+ED +L + AL+ NR
Sbjct: 1657 PELDPDVLNGGRVQLVARLVSREDTDLDLFSMTNGSALSVNR 1698
>gi|4506309 protein tyrosine phosphatase, receptor type, D isoform 1
precursor [Homo sapiens]
Length = 1912
Score = 28.9 bits (63), Expect = 2.1
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 4 GTVVITGGILATVILLCI-IAVLCYCRLQYYCCKKDESEEDEEEPDFAVHSHLP--PLHS 60
G + + G +LA V ++CI IA+L Y R + + S + +E + SH P P+
Sbjct: 1266 GLIWVVGPVLAVVFIICIVIAILLYKRKRAESDSRKSSIPNNKE----IPSHHPTDPVEL 1321
Query: 61 NRNLVLTNGPALYP 74
R T G A +P
Sbjct: 1322 RRLNFQTPGMASHP 1335
>gi|18860890 protein tyrosine phosphatase, receptor type, D isoform 2
precursor [Homo sapiens]
Length = 1899
Score = 28.9 bits (63), Expect = 2.1
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 4 GTVVITGGILATVILLCI-IAVLCYCRLQYYCCKKDESEEDEEEPDFAVHSHLP--PLHS 60
G + + G +LA V ++CI IA+L Y R + + S + +E + SH P P+
Sbjct: 1253 GLIWVVGPVLAVVFIICIVIAILLYKRKRAESDSRKSSIPNNKE----IPSHHPTDPVEL 1308
Query: 61 NRNLVLTNGPALYP 74
R T G A +P
Sbjct: 1309 RRLNFQTPGMASHP 1322
>gi|18860892 protein tyrosine phosphatase, receptor type, D isoform 3
precursor [Homo sapiens]
Length = 1903
Score = 28.9 bits (63), Expect = 2.1
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 4 GTVVITGGILATVILLCI-IAVLCYCRLQYYCCKKDESEEDEEEPDFAVHSHLP--PLHS 60
G + + G +LA V ++CI IA+L Y R + + S + +E + SH P P+
Sbjct: 1257 GLIWVVGPVLAVVFIICIVIAILLYKRKRAESDSRKSSIPNNKE----IPSHHPTDPVEL 1312
Query: 61 NRNLVLTNGPALYP 74
R T G A +P
Sbjct: 1313 RRLNFQTPGMASHP 1326
>gi|18860894 protein tyrosine phosphatase, receptor type, D isoform
4 precursor [Homo sapiens]
Length = 1501
Score = 28.9 bits (63), Expect = 2.1
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 4 GTVVITGGILATVILLCI-IAVLCYCRLQYYCCKKDESEEDEEEPDFAVHSHLP--PLHS 60
G + + G +LA V ++CI IA+L Y R + + S + +E + SH P P+
Sbjct: 855 GLIWVVGPVLAVVFIICIVIAILLYKRKRAESDSRKSSIPNNKE----IPSHHPTDPVEL 910
Query: 61 NRNLVLTNGPALYP 74
R T G A +P
Sbjct: 911 RRLNFQTPGMASHP 924
>gi|41349474 PR domain containing 4 [Homo sapiens]
Length = 801
Score = 28.9 bits (63), Expect = 2.1
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 90 LCRSCSHCEPPTFFLQEPPEEEEDVLNGGERVLYKSVSQEDVELPRGAFGGLQALNPNR 148
L R C+ PT P EEEED + E L SV ED + + ++L+ ++
Sbjct: 745 LTRHLKTCKGPTSSSSAPEEEEED--DSEEEDLADSVGTEDCRINSAVYSADESLSAHK 801
>gi|75677612 leucine rich repeat containing 37, member A3 [Homo
sapiens]
Length = 1634
Score = 28.9 bits (63), Expect = 2.1
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 9/40 (22%)
Query: 6 VVITGGILATVILLCIIAVLCYCRLQYYCCKKDESEEDEE 45
+++TG + +ILLC+I + CC + +EDEE
Sbjct: 1586 LIVTGILTILIILLCLIEI---------CCHRRSLQEDEE 1616
>gi|239740953 PREDICTED: similar to c114 SLIT-like testicular protein
isoform 2 [Homo sapiens]
Length = 1700
Score = 28.5 bits (62), Expect = 2.8
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 9/51 (17%)
Query: 6 VVITGGILATVILLCIIAVLCYCRLQYYCCKKDESEEDEEEPDFAVHSHLP 56
+++TG + +IL C+I + CC + +EDEE + LP
Sbjct: 1586 LIVTGILTILIILFCLIVI---------CCHRRSLQEDEEGFSRGIFRFLP 1627
>gi|116325993 c114 SLIT-like testicular protein [Homo sapiens]
Length = 1700
Score = 28.5 bits (62), Expect = 2.8
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 9/51 (17%)
Query: 6 VVITGGILATVILLCIIAVLCYCRLQYYCCKKDESEEDEEEPDFAVHSHLP 56
+++TG + +IL C+I + CC + +EDEE + LP
Sbjct: 1586 LIVTGILTILIILFCLIVI---------CCHRRSLQEDEEGFSRGIFRFLP 1627
>gi|110665701 leucine rich repeat containing 37A [Homo sapiens]
Length = 1700
Score = 28.5 bits (62), Expect = 2.8
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 9/51 (17%)
Query: 6 VVITGGILATVILLCIIAVLCYCRLQYYCCKKDESEEDEEEPDFAVHSHLP 56
+++TG + +IL C+I + CC + +EDEE + LP
Sbjct: 1586 LIVTGILTILIILFCLIVI---------CCHRRSLQEDEEGFSRGIFRFLP 1627
>gi|62865876 immunoglobulin superfamily, member 11 isoform b [Homo
sapiens]
Length = 431
Score = 28.5 bits (62), Expect = 2.8
Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 18/97 (18%)
Query: 11 GILATVILLCIIAVLCYCRLQYYCCKKDESEEDEEEPDFAVHSHLPP-----------LH 59
G A +I+ CI +L +Y K++ EE+EE P+ LPP +
Sbjct: 248 GTGAVIIIFCIALIL---GAFFYWRSKNKEEEEEEIPNEIREDDLPPKCSSAKAFHTEIS 304
Query: 60 SNRNLVLTNGPALYPTASTSFSQKSPQARALCRSCSH 96
S+ N LT+ A ++ + +P+ S SH
Sbjct: 305 SSDNNTLTSSNAY----NSRYWSNNPKVHRNTESVSH 337
>gi|62865874 immunoglobulin superfamily, member 11 isoform a [Homo
sapiens]
Length = 430
Score = 28.5 bits (62), Expect = 2.8
Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 18/97 (18%)
Query: 11 GILATVILLCIIAVLCYCRLQYYCCKKDESEEDEEEPDFAVHSHLPP-----------LH 59
G A +I+ CI +L +Y K++ EE+EE P+ LPP +
Sbjct: 247 GTGAVIIIFCIALIL---GAFFYWRSKNKEEEEEEIPNEIREDDLPPKCSSAKAFHTEIS 303
Query: 60 SNRNLVLTNGPALYPTASTSFSQKSPQARALCRSCSH 96
S+ N LT+ A ++ + +P+ S SH
Sbjct: 304 SSDNNTLTSSNAY----NSRYWSNNPKVHRNTESVSH 336
>gi|222831660 family with sequence similarity 171, member A2 [Homo
sapiens]
Length = 826
Score = 28.1 bits (61), Expect = 3.6
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 11/47 (23%)
Query: 2 TAGTVVITGGI-----LATVILLCIIAVLCY------CRLQYYCCKK 37
TAG V IT GI T+ LL I+A L C L YYC ++
Sbjct: 297 TAGLVTITSGIQDIGTYHTIFLLTILAALALLVLILLCLLIYYCRRR 343
>gi|104487611 protein tyrosine phosphatase, receptor type, sigma
isoform 4 precursor [Homo sapiens]
Length = 1505
Score = 28.1 bits (61), Expect = 3.6
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 17/81 (20%)
Query: 4 GTVVITGGILATVILLCI-IAVLCYCRLQYYCCKKDESEEDEEEP---------DFAVHS 53
G + + G +LA V ++CI IA+L Y K +S+ + EP D A H
Sbjct: 855 GLIWVIGPVLAVVFIICIVIAILLY-------KNKPDSKRKDSEPRTKCLLNNADLAPHH 907
Query: 54 HLPPLHSNRNLVLTNGPALYP 74
P+ R T G +P
Sbjct: 908 PKDPVEMRRINFQTPGMLSHP 928
>gi|104487297 protein tyrosine phosphatase, receptor type, sigma
isoform 2 precursor [Homo sapiens]
Length = 1910
Score = 28.1 bits (61), Expect = 3.6
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 17/81 (20%)
Query: 4 GTVVITGGILATVILLCI-IAVLCYCRLQYYCCKKDESEEDEEEP---------DFAVHS 53
G + + G +LA V ++CI IA+L Y K +S+ + EP D A H
Sbjct: 1260 GLIWVIGPVLAVVFIICIVIAILLY-------KNKPDSKRKDSEPRTKCLLNNADLAPHH 1312
Query: 54 HLPPLHSNRNLVLTNGPALYP 74
P+ R T G +P
Sbjct: 1313 PKDPVEMRRINFQTPGMLSHP 1333
>gi|104487295 protein tyrosine phosphatase, receptor type, sigma
isoform 3 precursor [Homo sapiens]
Length = 1501
Score = 28.1 bits (61), Expect = 3.6
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 17/81 (20%)
Query: 4 GTVVITGGILATVILLCI-IAVLCYCRLQYYCCKKDESEEDEEEP---------DFAVHS 53
G + + G +LA V ++CI IA+L Y K +S+ + EP D A H
Sbjct: 851 GLIWVIGPVLAVVFIICIVIAILLY-------KNKPDSKRKDSEPRTKCLLNNADLAPHH 903
Query: 54 HLPPLHSNRNLVLTNGPALYP 74
P+ R T G +P
Sbjct: 904 PKDPVEMRRINFQTPGMLSHP 924
>gi|169204830 PREDICTED: hypothetical protein LOC196446 [Homo
sapiens]
Length = 910
Score = 28.1 bits (61), Expect = 3.6
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 17/67 (25%)
Query: 17 ILLCIIAVLCYCRLQ----YYCCKKDESEEDEEEPDFAVHSHLPPLHSNRNLVLTNGPAL 72
+++ +IAV+ +C L Y KD+ D P+ LPP N+ + PAL
Sbjct: 628 LVITLIAVMAFCALTIVALYILSLKDQ---DRRVPN------LPP----SNITSSQEPAL 674
Query: 73 YPTASTS 79
PTAS+S
Sbjct: 675 LPTASSS 681
>gi|239750374 PREDICTED: chromosome 12 open reading frame 28 [Homo
sapiens]
Length = 972
Score = 28.1 bits (61), Expect = 3.6
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 17/67 (25%)
Query: 17 ILLCIIAVLCYCRLQ----YYCCKKDESEEDEEEPDFAVHSHLPPLHSNRNLVLTNGPAL 72
+++ +IAV+ +C L Y KD+ D P+ LPP N+ + PAL
Sbjct: 690 LVITLIAVMAFCALTIVALYILSLKDQ---DRRVPN------LPP----SNITSSQEPAL 736
Query: 73 YPTASTS 79
PTAS+S
Sbjct: 737 LPTASSS 743
>gi|169204180 PREDICTED: hypothetical protein LOC196446 [Homo
sapiens]
Length = 972
Score = 28.1 bits (61), Expect = 3.6
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 17/67 (25%)
Query: 17 ILLCIIAVLCYCRLQ----YYCCKKDESEEDEEEPDFAVHSHLPPLHSNRNLVLTNGPAL 72
+++ +IAV+ +C L Y KD+ D P+ LPP N+ + PAL
Sbjct: 690 LVITLIAVMAFCALTIVALYILSLKDQ---DRRVPN------LPP----SNITSSQEPAL 736
Query: 73 YPTASTS 79
PTAS+S
Sbjct: 737 LPTASSS 743
>gi|41872673 NIMA-related kinase 1 [Homo sapiens]
Length = 1258
Score = 28.1 bits (61), Expect = 3.6
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 44 EEEPDFAVHSHLPPLHSNRNLVL 66
EE F HSHLPP + N+N +L
Sbjct: 1010 EESFAFRSHSHLPPKNKNKNSLL 1032
>gi|148727368 bromodomain and PHD finger containing, 3 [Homo
sapiens]
Length = 1205
Score = 28.1 bits (61), Expect = 3.6
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 17/81 (20%)
Query: 37 KDESEEDEEEPDFAVHSHLPPLHSNRNLVLTNGPALYPT--ASTSFSQKSPQARALCRSC 94
++E E+D + D S LPP P L PT A + Q+SP +
Sbjct: 818 QEEPEDDGDRDD----SKLPP-----------PPTLEPTGPAPSLSEQESPPEPPTLKPI 862
Query: 95 SHCEPPTFFLQEPPEEEEDVL 115
+ +PP+ FL+ EE+++L
Sbjct: 863 NDSKPPSRFLKPRKVEEDELL 883
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,610,132
Number of Sequences: 37866
Number of extensions: 387077
Number of successful extensions: 1771
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 1745
Number of HSP's gapped (non-prelim): 63
length of query: 166
length of database: 18,247,518
effective HSP length: 95
effective length of query: 71
effective length of database: 14,650,248
effective search space: 1040167608
effective search space used: 1040167608
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.