Search of human proteins with 89001102

Search of human proteins with 89001102

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|89001102 zinc finger protein 237 isoform 2 [Homo sapiens]
         (208 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|89001102 zinc finger protein 237 isoform 2 [Homo sapiens]          422   e-118
gi|218083730 zinc finger protein 237 isoform 3 [Homo sapiens]         397   e-111
gi|89001100 zinc finger protein 237 isoform 1 [Homo sapiens]          397   e-111
gi|37574606 zinc finger protein 198 [Homo sapiens]                    210   6e-55
gi|4508011 zinc finger protein 198 [Homo sapiens]                     210   6e-55
gi|58331268 excision repair protein ERCC6-like [Homo sapiens]          32   0.50 
gi|5803229 kaiso [Homo sapiens]                                        31   0.65 
gi|114431248 hypothetical protein LOC205717 [Homo sapiens]             31   0.85 
gi|54112403 chromodomain helicase DNA binding protein 7 [Homo sa...    31   0.85 
gi|110735439 Werner syndrome protein [Homo sapiens]                    30   1.1  
gi|169218196 PREDICTED: similar to Werner syndrome ATP-dependent...    30   1.1  
gi|28872812 MORC family CW-type zinc finger 3 [Homo sapiens]           30   1.9  
gi|46359075 zinc finger protein 423 [Homo sapiens]                     29   3.2  
gi|157785656 nudix motif 7 [Homo sapiens]                              29   3.2  
gi|190358536 SWI/SNF-related, matrix-associated actin-dependent ...    28   4.2  
gi|190358534 SWI/SNF-related, matrix-associated actin-dependent ...    28   4.2  
gi|190358532 SWI/SNF-related, matrix-associated actin-dependent ...    28   4.2  
gi|62865614 TAF9 RNA polymerase II, TATA box binding protein-ass...    28   4.2  
gi|4507351 TAF9 RNA polymerase II, TATA box binding protein-asso...    28   4.2  
gi|74959747 Fanconi anemia, complementation group M [Homo sapiens]     28   4.2  
gi|28557790 zinc finger, CCHC domain containing 12 [Homo sapiens]      28   4.2  
gi|194239731 eukaryotic translation elongation factor 1 delta is...    28   4.2  
gi|194239727 eukaryotic translation elongation factor 1 delta is...    28   4.2  
gi|194239725 eukaryotic translation elongation factor 1 delta is...    28   4.2  
gi|194239723 eukaryotic translation elongation factor 1 delta is...    28   4.2  
gi|25453472 eukaryotic translation elongation factor 1 delta iso...    28   4.2  
gi|25453474 eukaryotic translation elongation factor 1 delta iso...    28   4.2  
gi|194239729 eukaryotic translation elongation factor 1 delta is...    28   4.2  
gi|157739864 ubiquitination factor E4B isoform 1 [Homo sapiens]        28   4.2  
gi|24308171 zinc finger protein 280C [Homo sapiens]                    28   5.5  

>gi|89001102 zinc finger protein 237 isoform 2 [Homo sapiens]
          Length = 208

 Score =  422 bits (1084), Expect = e-118
 Identities = 208/208 (100%), Positives = 208/208 (100%)

Query: 1   MEKCSVGGLELTEQTPALLGNMAMATSLMDIGDSFGHPACPLVSRSRNSPVEDDDDDDDV 60
           MEKCSVGGLELTEQTPALLGNMAMATSLMDIGDSFGHPACPLVSRSRNSPVEDDDDDDDV
Sbjct: 1   MEKCSVGGLELTEQTPALLGNMAMATSLMDIGDSFGHPACPLVSRSRNSPVEDDDDDDDV 60

Query: 61  VFIESIQPPSISAPAIADQRNFIFASSKNEKPQGNYSVIPPSSRDLASQKGNISETIVID 120
           VFIESIQPPSISAPAIADQRNFIFASSKNEKPQGNYSVIPPSSRDLASQKGNISETIVID
Sbjct: 61  VFIESIQPPSISAPAIADQRNFIFASSKNEKPQGNYSVIPPSSRDLASQKGNISETIVID 120

Query: 121 DEEDIETNGGAEKKSSCFIEWGLPGTKNKTNDLDFSTSSLSRSKTKTGVRPFNPGRMNVA 180
           DEEDIETNGGAEKKSSCFIEWGLPGTKNKTNDLDFSTSSLSRSKTKTGVRPFNPGRMNVA
Sbjct: 121 DEEDIETNGGAEKKSSCFIEWGLPGTKNKTNDLDFSTSSLSRSKTKTGVRPFNPGRMNVA 180

Query: 181 GDLFQNGEFATHHSPEMHLQRRLMSFFQ 208
           GDLFQNGEFATHHSPEMHLQRRLMSFFQ
Sbjct: 181 GDLFQNGEFATHHSPEMHLQRRLMSFFQ 208


>gi|218083730 zinc finger protein 237 isoform 3 [Homo sapiens]
          Length = 669

 Score =  397 bits (1019), Expect = e-111
 Identities = 195/196 (99%), Positives = 196/196 (100%)

Query: 1   MEKCSVGGLELTEQTPALLGNMAMATSLMDIGDSFGHPACPLVSRSRNSPVEDDDDDDDV 60
           MEKCSVGGLELTEQTPALLGNMAMATSLMDIGDSFGHPACPLVSRSRNSPVEDDDDDDDV
Sbjct: 1   MEKCSVGGLELTEQTPALLGNMAMATSLMDIGDSFGHPACPLVSRSRNSPVEDDDDDDDV 60

Query: 61  VFIESIQPPSISAPAIADQRNFIFASSKNEKPQGNYSVIPPSSRDLASQKGNISETIVID 120
           VFIESIQPPSISAPAIADQRNFIFASSKNEKPQGNYSVIPPSSRDLASQKGNISETIVID
Sbjct: 61  VFIESIQPPSISAPAIADQRNFIFASSKNEKPQGNYSVIPPSSRDLASQKGNISETIVID 120

Query: 121 DEEDIETNGGAEKKSSCFIEWGLPGTKNKTNDLDFSTSSLSRSKTKTGVRPFNPGRMNVA 180
           DEEDIETNGGAEKKSSCFIEWGLPGTKNKTNDLDFSTSSLSRSKTKTGVRPFNPGRMNVA
Sbjct: 121 DEEDIETNGGAEKKSSCFIEWGLPGTKNKTNDLDFSTSSLSRSKTKTGVRPFNPGRMNVA 180

Query: 181 GDLFQNGEFATHHSPE 196
           GDLFQNGEFATHHSP+
Sbjct: 181 GDLFQNGEFATHHSPD 196


>gi|89001100 zinc finger protein 237 isoform 1 [Homo sapiens]
          Length = 382

 Score =  397 bits (1019), Expect = e-111
 Identities = 195/196 (99%), Positives = 196/196 (100%)

Query: 1   MEKCSVGGLELTEQTPALLGNMAMATSLMDIGDSFGHPACPLVSRSRNSPVEDDDDDDDV 60
           MEKCSVGGLELTEQTPALLGNMAMATSLMDIGDSFGHPACPLVSRSRNSPVEDDDDDDDV
Sbjct: 1   MEKCSVGGLELTEQTPALLGNMAMATSLMDIGDSFGHPACPLVSRSRNSPVEDDDDDDDV 60

Query: 61  VFIESIQPPSISAPAIADQRNFIFASSKNEKPQGNYSVIPPSSRDLASQKGNISETIVID 120
           VFIESIQPPSISAPAIADQRNFIFASSKNEKPQGNYSVIPPSSRDLASQKGNISETIVID
Sbjct: 61  VFIESIQPPSISAPAIADQRNFIFASSKNEKPQGNYSVIPPSSRDLASQKGNISETIVID 120

Query: 121 DEEDIETNGGAEKKSSCFIEWGLPGTKNKTNDLDFSTSSLSRSKTKTGVRPFNPGRMNVA 180
           DEEDIETNGGAEKKSSCFIEWGLPGTKNKTNDLDFSTSSLSRSKTKTGVRPFNPGRMNVA
Sbjct: 121 DEEDIETNGGAEKKSSCFIEWGLPGTKNKTNDLDFSTSSLSRSKTKTGVRPFNPGRMNVA 180

Query: 181 GDLFQNGEFATHHSPE 196
           GDLFQNGEFATHHSP+
Sbjct: 181 GDLFQNGEFATHHSPD 196


>gi|37574606 zinc finger protein 198 [Homo sapiens]
          Length = 1377

 Score =  210 bits (535), Expect = 6e-55
 Identities = 110/169 (65%), Positives = 128/169 (75%)

Query: 1   MEKCSVGGLELTEQTPALLGNMAMATSLMDIGDSFGHPACPLVSRSRNSPVEDDDDDDDV 60
           M+  SVGGLELT+QTP LLG+ AMATSL ++G+SF  PA PLVSRS        +DDDDV
Sbjct: 1   MDTSSVGGLELTDQTPVLLGSTAMATSLTNVGNSFSGPANPLVSRSNKFQNSSVEDDDDV 60

Query: 61  VFIESIQPPSISAPAIADQRNFIFASSKNEKPQGNYSVIPPSSRDLASQKGNISETIVID 120
           VFIE +QPP  S P +ADQR   F SSKNE+ QGN S I PSS++LASQKG++SETIVID
Sbjct: 61  VFIEPVQPPPPSVPVVADQRTITFTSSKNEELQGNDSKITPSSKELASQKGSVSETIVID 120

Query: 121 DEEDIETNGGAEKKSSCFIEWGLPGTKNKTNDLDFSTSSLSRSKTKTGV 169
           DEED+ETN G EK SS FIE   P TKN+TND+DFSTSS SRSK   G+
Sbjct: 121 DEEDMETNQGQEKNSSNFIERRPPETKNRTNDVDFSTSSFSRSKVNAGM 169



 Score = 65.9 bits (159), Expect = 2e-11
 Identities = 31/40 (77%), Positives = 36/40 (90%), Gaps = 1/40 (2%)

Query: 157 TSSLSRSKTKTGVRPFNPGRMNVAGDLFQNGEFATHHSPE 196
           T SL+ S+TKTGV PFNPGRMNVAGD+FQNGE ATHH+P+
Sbjct: 245 TPSLT-SQTKTGVGPFNPGRMNVAGDVFQNGESATHHNPD 283


>gi|4508011 zinc finger protein 198 [Homo sapiens]
          Length = 1377

 Score =  210 bits (535), Expect = 6e-55
 Identities = 110/169 (65%), Positives = 128/169 (75%)

Query: 1   MEKCSVGGLELTEQTPALLGNMAMATSLMDIGDSFGHPACPLVSRSRNSPVEDDDDDDDV 60
           M+  SVGGLELT+QTP LLG+ AMATSL ++G+SF  PA PLVSRS        +DDDDV
Sbjct: 1   MDTSSVGGLELTDQTPVLLGSTAMATSLTNVGNSFSGPANPLVSRSNKFQNSSVEDDDDV 60

Query: 61  VFIESIQPPSISAPAIADQRNFIFASSKNEKPQGNYSVIPPSSRDLASQKGNISETIVID 120
           VFIE +QPP  S P +ADQR   F SSKNE+ QGN S I PSS++LASQKG++SETIVID
Sbjct: 61  VFIEPVQPPPPSVPVVADQRTITFTSSKNEELQGNDSKITPSSKELASQKGSVSETIVID 120

Query: 121 DEEDIETNGGAEKKSSCFIEWGLPGTKNKTNDLDFSTSSLSRSKTKTGV 169
           DEED+ETN G EK SS FIE   P TKN+TND+DFSTSS SRSK   G+
Sbjct: 121 DEEDMETNQGQEKNSSNFIERRPPETKNRTNDVDFSTSSFSRSKVNAGM 169



 Score = 65.9 bits (159), Expect = 2e-11
 Identities = 31/40 (77%), Positives = 36/40 (90%), Gaps = 1/40 (2%)

Query: 157 TSSLSRSKTKTGVRPFNPGRMNVAGDLFQNGEFATHHSPE 196
           T SL+ S+TKTGV PFNPGRMNVAGD+FQNGE ATHH+P+
Sbjct: 245 TPSLT-SQTKTGVGPFNPGRMNVAGDVFQNGESATHHNPD 283


>gi|58331268 excision repair protein ERCC6-like [Homo sapiens]
          Length = 1250

 Score = 31.6 bits (70), Expect = 0.50
 Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 12/93 (12%)

Query: 44   SRSRNSPVEDDDDDDDVVFIESIQPPSISAPAIADQRNFIFASSKNE-KPQGNY--SVIP 100
            S++R    + +D+DD      SI P + S    +  + F  ++ KN+  P G +  S IP
Sbjct: 1021 SKARRIVSDGEDEDDSFKDTSSINPFNTSLFQFSSVKQFDASTPKNDISPPGRFFSSQIP 1080

Query: 101  P-------SSRDLASQKGNISETIVIDDEEDIE 126
                    S R LAS++  I+  +V+D  ED+E
Sbjct: 1081 SSVNKSMNSRRSLASRRSLIN--MVLDHVEDME 1111


>gi|5803229 kaiso [Homo sapiens]
          Length = 672

 Score = 31.2 bits (69), Expect = 0.65
 Identities = 29/107 (27%), Positives = 43/107 (40%), Gaps = 18/107 (16%)

Query: 12  TEQTPALLG--NMAMATSLMDIGDSFGHPACPLVSRSRNSPVED-----------DDDDD 58
           TE  P   G  N+ +  S  +  D+ G    P+++ S +   ED           DDDDD
Sbjct: 135 TEPLPPDSGDKNLVIQKSKDEAQDN-GATIMPIITESFSLSAEDYEMKKIIVTDSDDDDD 193

Query: 59  DVVFIESIQPPSISAPAIADQRNFIFASSKNEKPQGNYSVIPPSSRD 105
           DV+F   I P   + P+     N +     N  P     V P +S +
Sbjct: 194 DVIFCSEILPTKETLPS----NNTVAQVQSNPGPVAISDVAPSASNN 236


>gi|114431248 hypothetical protein LOC205717 [Homo sapiens]
          Length = 2245

 Score = 30.8 bits (68), Expect = 0.85
 Identities = 32/147 (21%), Positives = 56/147 (38%), Gaps = 21/147 (14%)

Query: 37   HPACPLVSRSRNSPVEDDDDDDDVVFIESIQPPSISAPAIADQRNFIFASSKNEKPQGNY 96
            +P    +      P  D ++     F++S+  P +S   I  QR+         + Q N 
Sbjct: 1794 YPPVQSIPTGNGIPSRDSENTCHQSFMQSLLAPHLSDQVIGSQRSL-------SEHQRNT 1846

Query: 97   SVIPPSSRDLASQKGNISETIVIDDEEDIETNGGAEKKSSCFIEWGLPGTKNKTNDLDFS 156
               P S+ +      N   T    +   I     ++ + SC +  G   T+N T ++ FS
Sbjct: 1847 QCGPSSAIEY-----NCPPT---HENVHIRRESESQNRESCDMSLGAINTRNSTLNIPFS 1898

Query: 157  TSSLS------RSKTKTGVRPFNPGRM 177
            +SS S       +     V+  NP R+
Sbjct: 1899 SSSSSGDIQGRNTSPNVSVQKSNPMRI 1925


>gi|54112403 chromodomain helicase DNA binding protein 7 [Homo
            sapiens]
          Length = 2997

 Score = 30.8 bits (68), Expect = 0.85
 Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 20/102 (19%)

Query: 68   PPSISAPAIADQRNFIFASSKNEKPQGNYSVIPPSSRDLASQKGNISETIVIDDEEDIET 127
            PP IS+  I D+R    A  K E+P+       P++++    K           EE+ ET
Sbjct: 2154 PPVISSAHIQDERVLEQAEGKVEEPEN------PAAKEKCEGK-----------EEEEET 2196

Query: 128  NG-GAEKKSSCFIEWGLPGTKNKTNDLDFSTSSLSRSKTKTG 168
            +G G E K  C  E      KN+   ++    + S+S ++ G
Sbjct: 2197 DGSGKESKQECEAE--ASSVKNELKGVEVGADTGSKSISEKG 2236


>gi|110735439 Werner syndrome protein [Homo sapiens]
          Length = 1432

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 30/153 (19%), Positives = 63/153 (41%), Gaps = 4/153 (2%)

Query: 1   MEKCSVGGLELTEQTPALLGNMAMATSLMDIGDSFGHPACPLVSRSRNSPVEDDDDDDDV 60
           ME+  +  L++TE    +L   +    L DI         P  + +  S V + D+D ++
Sbjct: 387 MERACLMSLDITEHELQILEQQSQEEYLSDIAYKSTEHLSPNDNENDTSYVIESDEDLEM 446

Query: 61  VFIESIQP---PSISAPAIADQRNFIFASSKNEKPQGNYSVIPPSSRDLASQKGNISETI 117
             ++ + P    + ++  I    +      K+ +   + +V P  S+ L  ++     T 
Sbjct: 447 EMLKHLSPNDNENDTSYVIESDEDLEMEMLKSLENLNSGTVEPTHSKCLKMERNLGLPTK 506

Query: 118 VIDDEEDIETNGGAEKKSSCFIEWGLPGTKNKT 150
             +++++ E N G E     F+ W  P  +  T
Sbjct: 507 EEEEDDENEANEGEEDDDKDFL-WPAPNEEQVT 538


>gi|169218196 PREDICTED: similar to Werner syndrome ATP-dependent
           helicase, partial [Homo sapiens]
          Length = 1140

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 30/153 (19%), Positives = 63/153 (41%), Gaps = 4/153 (2%)

Query: 1   MEKCSVGGLELTEQTPALLGNMAMATSLMDIGDSFGHPACPLVSRSRNSPVEDDDDDDDV 60
           ME+  +  L++TE    +L   +    L DI         P  + +  S V + D+D ++
Sbjct: 95  MERACLMSLDITEHELQILEQQSQEEYLSDIAYKSTEHLSPNDNENDTSYVIESDEDLEM 154

Query: 61  VFIESIQP---PSISAPAIADQRNFIFASSKNEKPQGNYSVIPPSSRDLASQKGNISETI 117
             ++ + P    + ++  I    +      K+ +   + +V P  S+ L  ++     T 
Sbjct: 155 EMLKHLSPNDNENDTSYVIESDEDLEMEMLKSLENLNSGTVEPTHSKCLKMERNLGLPTK 214

Query: 118 VIDDEEDIETNGGAEKKSSCFIEWGLPGTKNKT 150
             +++++ E N G E     F+ W  P  +  T
Sbjct: 215 EEEEDDENEANEGEEDDDKDFL-WPAPNEEQVT 246


>gi|28872812 MORC family CW-type zinc finger 3 [Homo sapiens]
          Length = 939

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 5/73 (6%)

Query: 42  LVSRSRNSPVEDDDDDDDVVFIESIQPPSISAPAIADQRNFIFASSKNEKPQGNYSVIPP 101
           L S+  NS  + DDDD+DV+ +E    P    PA+    +    S ++   QG   V   
Sbjct: 559 LSSQFENSVYKGDDDDEDVIILEENSTPK---PAV--DHDIDMKSEQSHVEQGGVQVEFV 613

Query: 102 SSRDLASQKGNIS 114
              +   Q G+ S
Sbjct: 614 GDSEPCGQTGSTS 626


>gi|46359075 zinc finger protein 423 [Homo sapiens]
          Length = 1284

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 12/100 (12%)

Query: 21  NMAMATSLMDIGDSFGHPACPLVS----RSRNSPV------EDDDD--DDDVVFIESIQP 68
           ++A  +S+   G   G P C   +      RNS        EDD+D  D+ +   +  Q 
Sbjct: 15  SLAWDSSVTAAGGLEGEPECDQKTSRALEDRNSVTSQEERNEDDEDMEDESIYTCDHCQQ 74

Query: 69  PSISAPAIADQRNFIFASSKNEKPQGNYSVIPPSSRDLAS 108
              S   + D R        ++ PQ ++    PSS+D+AS
Sbjct: 75  DFESLADLTDHRAHRCPGDGDDDPQLSWVASSPSSKDVAS 114


>gi|157785656 nudix motif 7 [Homo sapiens]
          Length = 238

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 14/102 (13%)

Query: 70  SISAPAIADQRNFIFASSKNEKPQGNYSVIPPSSRDLASQKGNISETIVIDDEEDIETNG 129
           S+   A A  R +      +  P   YSV+ P    L +++G +     +  E+     G
Sbjct: 14  SLLDDAKARLRKYDIGGKYSHLPYNKYSVLLP----LVAKEGKLHLLFTVRSEKLRRAPG 69

Query: 130 GAEKKSSCFIEWGLPGTKNKTNDLDFSTSSLSRSKTKTGVRP 171
                  CF     PG K    D+D + ++L  ++ + G+RP
Sbjct: 70  EV-----CF-----PGGKRDPTDMDDAATALREAQEEVGLRP 101


>gi|190358536 SWI/SNF-related, matrix-associated actin-dependent
           regulator of chromatin, subfamily a, containing DEAD/H
           box 1 isoform a [Homo sapiens]
          Length = 1028

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 9   LELTEQTPALLGNMAMATSLMDIGDSFGHPACPLVSRSRNSPVEDDDDDDD 59
           L+L E T  + G  A+A +L+  GD+ G P    +S S + P E+D+ +DD
Sbjct: 178 LKLIESTSTMDG--AIAAALLMFGDAGGGPRKRKLS-SSSEPYEEDEFNDD 225


>gi|190358534 SWI/SNF-related, matrix-associated actin-dependent
           regulator of chromatin, subfamily a, containing DEAD/H
           box 1 isoform b [Homo sapiens]
          Length = 1026

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 9   LELTEQTPALLGNMAMATSLMDIGDSFGHPACPLVSRSRNSPVEDDDDDDD 59
           L+L E T  + G  A+A +L+  GD+ G P    +S S + P E+D+ +DD
Sbjct: 178 LKLIESTSTMDG--AIAAALLMFGDAGGGPRKRKLS-SSSEPYEEDEFNDD 225


>gi|190358532 SWI/SNF-related, matrix-associated actin-dependent
           regulator of chromatin, subfamily a, containing DEAD/H
           box 1 isoform a [Homo sapiens]
          Length = 1028

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 9   LELTEQTPALLGNMAMATSLMDIGDSFGHPACPLVSRSRNSPVEDDDDDDD 59
           L+L E T  + G  A+A +L+  GD+ G P    +S S + P E+D+ +DD
Sbjct: 178 LKLIESTSTMDG--AIAAALLMFGDAGGGPRKRKLS-SSSEPYEEDEFNDD 225


>gi|62865614 TAF9 RNA polymerase II, TATA box binding
           protein-associated factor isoform a [Homo sapiens]
          Length = 264

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 3/46 (6%)

Query: 16  PALLG--NMAMATSLMDIGDSFGHPACPLVSRSRNSPVEDDDDDDD 59
           P+L+G  N+ + T++M    +  + +   + R R    +DDDDDDD
Sbjct: 216 PSLIGSKNILITTNMMS-SQNTANESSNALKRKREDDDDDDDDDDD 260


>gi|4507351 TAF9 RNA polymerase II, TATA box binding
           protein-associated factor isoform a [Homo sapiens]
          Length = 264

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 3/46 (6%)

Query: 16  PALLG--NMAMATSLMDIGDSFGHPACPLVSRSRNSPVEDDDDDDD 59
           P+L+G  N+ + T++M    +  + +   + R R    +DDDDDDD
Sbjct: 216 PSLIGSKNILITTNMMS-SQNTANESSNALKRKREDDDDDDDDDDD 260


>gi|74959747 Fanconi anemia, complementation group M [Homo sapiens]
          Length = 2048

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 4/88 (4%)

Query: 84   FASSKNEKPQGNYSVIPPSSRDLASQKGNISETIVIDDEEDIETNGGAEKKSSCFIEWGL 143
            FA+SK  K +    +     ++ A  K  +S  I+ DD  + E N   +++S+  +    
Sbjct: 1635 FANSKKYKTRRAVMLKEMMEQNCAHSKKKLSRIILPDDSSEEENNVNDKRESNIAVN--- 1691

Query: 144  PGTKNKTNDLDFSTSSL-SRSKTKTGVR 170
            P T  K    D   +S+ S S  ++ VR
Sbjct: 1692 PSTVKKNKQQDHCLNSVPSGSSAQSKVR 1719


>gi|28557790 zinc finger, CCHC domain containing 12 [Homo sapiens]
          Length = 402

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 2/28 (7%)

Query: 54  DDDDDDVVFIESIQP--PSISAPAIADQ 79
           DD D+DV+ +ES  P  PS  AP + D+
Sbjct: 271 DDSDEDVILVESQDPPLPSWGAPPLRDR 298


>gi|194239731 eukaryotic translation elongation factor 1 delta
           isoform 2 [Homo sapiens]
          Length = 281

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 14/44 (31%), Positives = 23/44 (52%)

Query: 49  SPVEDDDDDDDVVFIESIQPPSISAPAIADQRNFIFASSKNEKP 92
           +P EDD+DDD  +F    +     A  + ++R   +A  K +KP
Sbjct: 147 TPAEDDEDDDIDLFGSDNEEEDKEAAQLREERLRQYAEKKAKKP 190


>gi|194239727 eukaryotic translation elongation factor 1 delta
           isoform 2 [Homo sapiens]
          Length = 281

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 14/44 (31%), Positives = 23/44 (52%)

Query: 49  SPVEDDDDDDDVVFIESIQPPSISAPAIADQRNFIFASSKNEKP 92
           +P EDD+DDD  +F    +     A  + ++R   +A  K +KP
Sbjct: 147 TPAEDDEDDDIDLFGSDNEEEDKEAAQLREERLRQYAEKKAKKP 190


>gi|194239725 eukaryotic translation elongation factor 1 delta
           isoform 3 [Homo sapiens]
          Length = 646

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 14/44 (31%), Positives = 23/44 (52%)

Query: 49  SPVEDDDDDDDVVFIESIQPPSISAPAIADQRNFIFASSKNEKP 92
           +P EDD+DDD  +F    +     A  + ++R   +A  K +KP
Sbjct: 512 TPAEDDEDDDIDLFGSDNEEEDKEAAQLREERLRQYAEKKAKKP 555


>gi|194239723 eukaryotic translation elongation factor 1 delta
           isoform 1 [Homo sapiens]
          Length = 647

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 14/44 (31%), Positives = 23/44 (52%)

Query: 49  SPVEDDDDDDDVVFIESIQPPSISAPAIADQRNFIFASSKNEKP 92
           +P EDD+DDD  +F    +     A  + ++R   +A  K +KP
Sbjct: 513 TPAEDDEDDDIDLFGSDNEEEDKEAAQLREERLRQYAEKKAKKP 556


>gi|25453472 eukaryotic translation elongation factor 1 delta
           isoform 2 [Homo sapiens]
          Length = 281

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 14/44 (31%), Positives = 23/44 (52%)

Query: 49  SPVEDDDDDDDVVFIESIQPPSISAPAIADQRNFIFASSKNEKP 92
           +P EDD+DDD  +F    +     A  + ++R   +A  K +KP
Sbjct: 147 TPAEDDEDDDIDLFGSDNEEEDKEAAQLREERLRQYAEKKAKKP 190


>gi|25453474 eukaryotic translation elongation factor 1 delta
           isoform 1 [Homo sapiens]
          Length = 647

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 14/44 (31%), Positives = 23/44 (52%)

Query: 49  SPVEDDDDDDDVVFIESIQPPSISAPAIADQRNFIFASSKNEKP 92
           +P EDD+DDD  +F    +     A  + ++R   +A  K +KP
Sbjct: 513 TPAEDDEDDDIDLFGSDNEEEDKEAAQLREERLRQYAEKKAKKP 556


>gi|194239729 eukaryotic translation elongation factor 1 delta
           isoform 4 [Homo sapiens]
          Length = 257

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 14/44 (31%), Positives = 23/44 (52%)

Query: 49  SPVEDDDDDDDVVFIESIQPPSISAPAIADQRNFIFASSKNEKP 92
           +P EDD+DDD  +F    +     A  + ++R   +A  K +KP
Sbjct: 123 TPAEDDEDDDIDLFGSDNEEEDKEAAQLREERLRQYAEKKAKKP 166


>gi|157739864 ubiquitination factor E4B isoform 1 [Homo sapiens]
          Length = 1302

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 15/46 (32%), Positives = 23/46 (50%)

Query: 65  SIQPPSISAPAIADQRNFIFASSKNEKPQGNYSVIPPSSRDLASQK 110
           SI   S S PA+A     + ASS  ++P      +PP+S    S++
Sbjct: 345 SILSSSPSPPALASSPQAVPASSSRQRPSSTGPPLPPASPSATSRR 390


>gi|24308171 zinc finger protein 280C [Homo sapiens]
          Length = 737

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 6/59 (10%)

Query: 54  DDDDDDVVFIESIQPPSISAPAIAD--QRNFIFASSKNEKPQGNYSVIPPSSRDLASQK 110
           D+DDD+++F+  I   S S PAI++   R    +SSK  K + +   IP   R  ASQ+
Sbjct: 39  DEDDDELIFVGEI---SSSKPAISNILNRGHSSSSSKGIKSEPHSPGIPEIFR-TASQR 93


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.313    0.130    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,523,557
Number of Sequences: 37866
Number of extensions: 374226
Number of successful extensions: 1199
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 1161
Number of HSP's gapped (non-prelim): 63
length of query: 208
length of database: 18,247,518
effective HSP length: 98
effective length of query: 110
effective length of database: 14,536,650
effective search space: 1599031500
effective search space used: 1599031500
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.