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Search of human proteins with 89001100
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|89001100 zinc finger protein 237 isoform 1 [Homo sapiens]
(382 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|89001100 zinc finger protein 237 isoform 1 [Homo sapiens] 777 0.0
gi|218083730 zinc finger protein 237 isoform 3 [Homo sapiens] 704 0.0
gi|89001102 zinc finger protein 237 isoform 2 [Homo sapiens] 397 e-110
gi|37574606 zinc finger protein 198 [Homo sapiens] 287 1e-77
gi|4508011 zinc finger protein 198 [Homo sapiens] 287 1e-77
gi|42475941 zinc finger protein 261 [Homo sapiens] 91 2e-18
gi|4827067 zinc finger protein 261 [Homo sapiens] 91 2e-18
gi|113205089 zinc finger, MYM domain containing 1 [Homo sapiens] 75 1e-13
gi|44890068 zinc finger protein 262 [Homo sapiens] 74 2e-13
gi|115511046 zinc finger protein 258 [Homo sapiens] 67 3e-11
gi|58331268 excision repair protein ERCC6-like [Homo sapiens] 32 1.2
gi|122937412 ubiquitin specific peptidase 45 [Homo sapiens] 32 1.2
gi|5803229 kaiso [Homo sapiens] 31 1.6
gi|114431248 hypothetical protein LOC205717 [Homo sapiens] 31 2.1
gi|54112403 chromodomain helicase DNA binding protein 7 [Homo sa... 31 2.1
gi|110735439 Werner syndrome protein [Homo sapiens] 30 2.8
gi|169218196 PREDICTED: similar to Werner syndrome ATP-dependent... 30 2.8
gi|239750815 PREDICTED: StAR-related lipid transfer (START) doma... 30 2.8
gi|239745175 PREDICTED: StAR-related lipid transfer (START) doma... 30 2.8
gi|62177127 myosin heavy chain Myr 8 [Homo sapiens] 30 2.8
gi|4505001 LIM domain kinase 1 [Homo sapiens] 30 4.7
gi|28872812 MORC family CW-type zinc finger 3 [Homo sapiens] 30 4.7
gi|239756270 PREDICTED: StAR-related lipid transfer (START) doma... 29 6.2
gi|46359075 zinc finger protein 423 [Homo sapiens] 29 8.1
gi|157785656 nudix motif 7 [Homo sapiens] 29 8.1
gi|12738834 PRAME family member 2 [Homo sapiens] 29 8.1
>gi|89001100 zinc finger protein 237 isoform 1 [Homo sapiens]
Length = 382
Score = 777 bits (2006), Expect = 0.0
Identities = 382/382 (100%), Positives = 382/382 (100%)
Query: 1 MEKCSVGGLELTEQTPALLGNMAMATSLMDIGDSFGHPACPLVSRSRNSPVEDDDDDDDV 60
MEKCSVGGLELTEQTPALLGNMAMATSLMDIGDSFGHPACPLVSRSRNSPVEDDDDDDDV
Sbjct: 1 MEKCSVGGLELTEQTPALLGNMAMATSLMDIGDSFGHPACPLVSRSRNSPVEDDDDDDDV 60
Query: 61 VFIESIQPPSISAPAIADQRNFIFASSKNEKPQGNYSVIPPSSRDLASQKGNISETIVID 120
VFIESIQPPSISAPAIADQRNFIFASSKNEKPQGNYSVIPPSSRDLASQKGNISETIVID
Sbjct: 61 VFIESIQPPSISAPAIADQRNFIFASSKNEKPQGNYSVIPPSSRDLASQKGNISETIVID 120
Query: 121 DEEDIETNGGAEKKSSCFIEWGLPGTKNKTNDLDFSTSSLSRSKTKTGVRPFNPGRMNVA 180
DEEDIETNGGAEKKSSCFIEWGLPGTKNKTNDLDFSTSSLSRSKTKTGVRPFNPGRMNVA
Sbjct: 121 DEEDIETNGGAEKKSSCFIEWGLPGTKNKTNDLDFSTSSLSRSKTKTGVRPFNPGRMNVA 180
Query: 181 GDLFQNGEFATHHSPDSWISQSASFPSNQKQPGVDSLSPVALLRKQNFQPTAQQQLTKPA 240
GDLFQNGEFATHHSPDSWISQSASFPSNQKQPGVDSLSPVALLRKQNFQPTAQQQLTKPA
Sbjct: 181 GDLFQNGEFATHHSPDSWISQSASFPSNQKQPGVDSLSPVALLRKQNFQPTAQQQLTKPA 240
Query: 241 KITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSSFSHKRTQNTRSIICKKDASTKKANV 300
KITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSSFSHKRTQNTRSIICKKDASTKKANV
Sbjct: 241 KITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSSFSHKRTQNTRSIICKKDASTKKANV 300
Query: 301 ILPVESSKSFQEFYSTSCLSPCENNWNLKKGVFNKSRCTICSKLAEVWIFIPKLLFRLTV 360
ILPVESSKSFQEFYSTSCLSPCENNWNLKKGVFNKSRCTICSKLAEVWIFIPKLLFRLTV
Sbjct: 301 ILPVESSKSFQEFYSTSCLSPCENNWNLKKGVFNKSRCTICSKLAEVWIFIPKLLFRLTV 360
Query: 361 IILTFKCYYVLFHLHNARVLDV 382
IILTFKCYYVLFHLHNARVLDV
Sbjct: 361 IILTFKCYYVLFHLHNARVLDV 382
>gi|218083730 zinc finger protein 237 isoform 3 [Homo sapiens]
Length = 669
Score = 704 bits (1818), Expect = 0.0
Identities = 346/347 (99%), Positives = 347/347 (100%)
Query: 1 MEKCSVGGLELTEQTPALLGNMAMATSLMDIGDSFGHPACPLVSRSRNSPVEDDDDDDDV 60
MEKCSVGGLELTEQTPALLGNMAMATSLMDIGDSFGHPACPLVSRSRNSPVEDDDDDDDV
Sbjct: 1 MEKCSVGGLELTEQTPALLGNMAMATSLMDIGDSFGHPACPLVSRSRNSPVEDDDDDDDV 60
Query: 61 VFIESIQPPSISAPAIADQRNFIFASSKNEKPQGNYSVIPPSSRDLASQKGNISETIVID 120
VFIESIQPPSISAPAIADQRNFIFASSKNEKPQGNYSVIPPSSRDLASQKGNISETIVID
Sbjct: 61 VFIESIQPPSISAPAIADQRNFIFASSKNEKPQGNYSVIPPSSRDLASQKGNISETIVID 120
Query: 121 DEEDIETNGGAEKKSSCFIEWGLPGTKNKTNDLDFSTSSLSRSKTKTGVRPFNPGRMNVA 180
DEEDIETNGGAEKKSSCFIEWGLPGTKNKTNDLDFSTSSLSRSKTKTGVRPFNPGRMNVA
Sbjct: 121 DEEDIETNGGAEKKSSCFIEWGLPGTKNKTNDLDFSTSSLSRSKTKTGVRPFNPGRMNVA 180
Query: 181 GDLFQNGEFATHHSPDSWISQSASFPSNQKQPGVDSLSPVALLRKQNFQPTAQQQLTKPA 240
GDLFQNGEFATHHSPDSWISQSASFPSNQKQPGVDSLSPVALLRKQNFQPTAQQQLTKPA
Sbjct: 181 GDLFQNGEFATHHSPDSWISQSASFPSNQKQPGVDSLSPVALLRKQNFQPTAQQQLTKPA 240
Query: 241 KITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSSFSHKRTQNTRSIICKKDASTKKANV 300
KITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSSFSHKRTQNTRSIICKKDASTKKANV
Sbjct: 241 KITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSSFSHKRTQNTRSIICKKDASTKKANV 300
Query: 301 ILPVESSKSFQEFYSTSCLSPCENNWNLKKGVFNKSRCTICSKLAEV 347
ILPVESSKSFQEFYSTSCLSPCENNWNLKKGVFNKSRCTICSKLAE+
Sbjct: 301 ILPVESSKSFQEFYSTSCLSPCENNWNLKKGVFNKSRCTICSKLAEI 347
>gi|89001102 zinc finger protein 237 isoform 2 [Homo sapiens]
Length = 208
Score = 397 bits (1019), Expect = e-110
Identities = 195/196 (99%), Positives = 196/196 (100%)
Query: 1 MEKCSVGGLELTEQTPALLGNMAMATSLMDIGDSFGHPACPLVSRSRNSPVEDDDDDDDV 60
MEKCSVGGLELTEQTPALLGNMAMATSLMDIGDSFGHPACPLVSRSRNSPVEDDDDDDDV
Sbjct: 1 MEKCSVGGLELTEQTPALLGNMAMATSLMDIGDSFGHPACPLVSRSRNSPVEDDDDDDDV 60
Query: 61 VFIESIQPPSISAPAIADQRNFIFASSKNEKPQGNYSVIPPSSRDLASQKGNISETIVID 120
VFIESIQPPSISAPAIADQRNFIFASSKNEKPQGNYSVIPPSSRDLASQKGNISETIVID
Sbjct: 61 VFIESIQPPSISAPAIADQRNFIFASSKNEKPQGNYSVIPPSSRDLASQKGNISETIVID 120
Query: 121 DEEDIETNGGAEKKSSCFIEWGLPGTKNKTNDLDFSTSSLSRSKTKTGVRPFNPGRMNVA 180
DEEDIETNGGAEKKSSCFIEWGLPGTKNKTNDLDFSTSSLSRSKTKTGVRPFNPGRMNVA
Sbjct: 121 DEEDIETNGGAEKKSSCFIEWGLPGTKNKTNDLDFSTSSLSRSKTKTGVRPFNPGRMNVA 180
Query: 181 GDLFQNGEFATHHSPD 196
GDLFQNGEFATHHSP+
Sbjct: 181 GDLFQNGEFATHHSPE 196
>gi|37574606 zinc finger protein 198 [Homo sapiens]
Length = 1377
Score = 287 bits (734), Expect = 1e-77
Identities = 141/191 (73%), Positives = 156/191 (81%), Gaps = 1/191 (0%)
Query: 157 TSSLSRSKTKTGVRPFNPGRMNVAGDLFQNGEFATHHSPDSWISQSASFPSNQKQPGVDS 216
T SL+ S+TKTGV PFNPGRMNVAGD+FQNGE ATHH+PDSWISQSASFP NQKQPGVDS
Sbjct: 245 TPSLT-SQTKTGVGPFNPGRMNVAGDVFQNGESATHHNPDSWISQSASFPRNQKQPGVDS 303
Query: 217 LSPVALLRKQNFQPTAQQQLTKPAKITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSSF 276
LSPVA L KQ FQP+ QQQ TKP K+TCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSSF
Sbjct: 304 LSPVASLPKQIFQPSVQQQPTKPVKVTCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSSF 363
Query: 277 SHKRTQNTRSIICKKDASTKKANVILPVESSKSFQEFYSTSCLSPCENNWNLKKGVFNKS 336
SHK ++CKKD +T K ++ V+SS+SFQEF STSCLS E+ N KG NKS
Sbjct: 364 SHKPAPKKLCVMCKKDITTMKGTIVAQVDSSESFQEFCSTSCLSLYEDKQNPTKGALNKS 423
Query: 337 RCTICSKLAEV 347
RCTIC KL E+
Sbjct: 424 RCTICGKLTEI 434
Score = 210 bits (535), Expect = 1e-54
Identities = 110/169 (65%), Positives = 128/169 (75%)
Query: 1 MEKCSVGGLELTEQTPALLGNMAMATSLMDIGDSFGHPACPLVSRSRNSPVEDDDDDDDV 60
M+ SVGGLELT+QTP LLG+ AMATSL ++G+SF PA PLVSRS +DDDDV
Sbjct: 1 MDTSSVGGLELTDQTPVLLGSTAMATSLTNVGNSFSGPANPLVSRSNKFQNSSVEDDDDV 60
Query: 61 VFIESIQPPSISAPAIADQRNFIFASSKNEKPQGNYSVIPPSSRDLASQKGNISETIVID 120
VFIE +QPP S P +ADQR F SSKNE+ QGN S I PSS++LASQKG++SETIVID
Sbjct: 61 VFIEPVQPPPPSVPVVADQRTITFTSSKNEELQGNDSKITPSSKELASQKGSVSETIVID 120
Query: 121 DEEDIETNGGAEKKSSCFIEWGLPGTKNKTNDLDFSTSSLSRSKTKTGV 169
DEED+ETN G EK SS FIE P TKN+TND+DFSTSS SRSK G+
Sbjct: 121 DEEDMETNQGQEKNSSNFIERRPPETKNRTNDVDFSTSSFSRSKVNAGM 169
Score = 28.9 bits (63), Expect = 8.1
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 242 ITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSSFSHKRTQNTRSIICKKDASTKK 297
+TC C + +KG T + G FCS C F + R CK + K+
Sbjct: 725 VTCNYCSQLCKKGATK-ELDGVVRDFCSEDCCKKFQDWYYKAARCDCCKSQGTLKE 779
>gi|4508011 zinc finger protein 198 [Homo sapiens]
Length = 1377
Score = 287 bits (734), Expect = 1e-77
Identities = 141/191 (73%), Positives = 156/191 (81%), Gaps = 1/191 (0%)
Query: 157 TSSLSRSKTKTGVRPFNPGRMNVAGDLFQNGEFATHHSPDSWISQSASFPSNQKQPGVDS 216
T SL+ S+TKTGV PFNPGRMNVAGD+FQNGE ATHH+PDSWISQSASFP NQKQPGVDS
Sbjct: 245 TPSLT-SQTKTGVGPFNPGRMNVAGDVFQNGESATHHNPDSWISQSASFPRNQKQPGVDS 303
Query: 217 LSPVALLRKQNFQPTAQQQLTKPAKITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSSF 276
LSPVA L KQ FQP+ QQQ TKP K+TCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSSF
Sbjct: 304 LSPVASLPKQIFQPSVQQQPTKPVKVTCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSSF 363
Query: 277 SHKRTQNTRSIICKKDASTKKANVILPVESSKSFQEFYSTSCLSPCENNWNLKKGVFNKS 336
SHK ++CKKD +T K ++ V+SS+SFQEF STSCLS E+ N KG NKS
Sbjct: 364 SHKPAPKKLCVMCKKDITTMKGTIVAQVDSSESFQEFCSTSCLSLYEDKQNPTKGALNKS 423
Query: 337 RCTICSKLAEV 347
RCTIC KL E+
Sbjct: 424 RCTICGKLTEI 434
Score = 210 bits (535), Expect = 1e-54
Identities = 110/169 (65%), Positives = 128/169 (75%)
Query: 1 MEKCSVGGLELTEQTPALLGNMAMATSLMDIGDSFGHPACPLVSRSRNSPVEDDDDDDDV 60
M+ SVGGLELT+QTP LLG+ AMATSL ++G+SF PA PLVSRS +DDDDV
Sbjct: 1 MDTSSVGGLELTDQTPVLLGSTAMATSLTNVGNSFSGPANPLVSRSNKFQNSSVEDDDDV 60
Query: 61 VFIESIQPPSISAPAIADQRNFIFASSKNEKPQGNYSVIPPSSRDLASQKGNISETIVID 120
VFIE +QPP S P +ADQR F SSKNE+ QGN S I PSS++LASQKG++SETIVID
Sbjct: 61 VFIEPVQPPPPSVPVVADQRTITFTSSKNEELQGNDSKITPSSKELASQKGSVSETIVID 120
Query: 121 DEEDIETNGGAEKKSSCFIEWGLPGTKNKTNDLDFSTSSLSRSKTKTGV 169
DEED+ETN G EK SS FIE P TKN+TND+DFSTSS SRSK G+
Sbjct: 121 DEEDMETNQGQEKNSSNFIERRPPETKNRTNDVDFSTSSFSRSKVNAGM 169
Score = 28.9 bits (63), Expect = 8.1
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 242 ITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSSFSHKRTQNTRSIICKKDASTKK 297
+TC C + +KG T + G FCS C F + R CK + K+
Sbjct: 725 VTCNYCSQLCKKGATK-ELDGVVRDFCSEDCCKKFQDWYYKAARCDCCKSQGTLKE 779
>gi|42475941 zinc finger protein 261 [Homo sapiens]
Length = 1370
Score = 90.5 bits (223), Expect = 2e-18
Identities = 48/111 (43%), Positives = 64/111 (57%), Gaps = 4/111 (3%)
Query: 241 KITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSSFSHKRTQNTRSIICKKDASTKKANV 300
K+TCA+C+ PLQKGQTAYQRKG LFCS++CL++FS K + CKK+ K +V
Sbjct: 308 KMTCAHCRTPLQKGQTAYQRKGLPQLFCSSSCLTTFSKKPSGKKTCTFCKKEIWNTKDSV 367
Query: 301 ILPVESSKSFQEFYSTSCLSPCENNWN----LKKGVFNKSRCTICSKLAEV 347
+ S SF EF ++ CLS E + +RC+IC K EV
Sbjct: 368 VAQTGSGGSFHEFCTSVCLSLYEAQQQRPIPQSGDPADATRCSICQKTGEV 418
Score = 30.8 bits (68), Expect = 2.1
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 242 ITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSSFSHKRTQNTRSIICKK 291
ITC C + Q+G T Q GS FCS C S + + R CK+
Sbjct: 677 ITCTYCSQTCQRGVTE-QLDGSTWDFCSEDCKSKYLLWYCKAARCHACKR 725
>gi|4827067 zinc finger protein 261 [Homo sapiens]
Length = 1370
Score = 90.5 bits (223), Expect = 2e-18
Identities = 48/111 (43%), Positives = 64/111 (57%), Gaps = 4/111 (3%)
Query: 241 KITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSSFSHKRTQNTRSIICKKDASTKKANV 300
K+TCA+C+ PLQKGQTAYQRKG LFCS++CL++FS K + CKK+ K +V
Sbjct: 308 KMTCAHCRTPLQKGQTAYQRKGLPQLFCSSSCLTTFSKKPSGKKTCTFCKKEIWNTKDSV 367
Query: 301 ILPVESSKSFQEFYSTSCLSPCENNWN----LKKGVFNKSRCTICSKLAEV 347
+ S SF EF ++ CLS E + +RC+IC K EV
Sbjct: 368 VAQTGSGGSFHEFCTSVCLSLYEAQQQRPIPQSGDPADATRCSICQKTGEV 418
Score = 30.8 bits (68), Expect = 2.1
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 242 ITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSSFSHKRTQNTRSIICKK 291
ITC C + Q+G T Q GS FCS C S + + R CK+
Sbjct: 677 ITCTYCSQTCQRGVTE-QLDGSTWDFCSEDCKSKYLLWYCKAARCHACKR 725
>gi|113205089 zinc finger, MYM domain containing 1 [Homo sapiens]
Length = 1142
Score = 74.7 bits (182), Expect = 1e-13
Identities = 46/116 (39%), Positives = 59/116 (50%), Gaps = 7/116 (6%)
Query: 237 TKPAKITCANCKKPLQKGQTAYQRKGSAHLFCSTTC----LSSFSHKRTQNTRSIICKKD 292
T +++CA CKK LQKGQTAYQRKGSA LFCS C +SS S C KD
Sbjct: 82 TTAIQVSCAGCKKILQKGQTAYQRKGSAQLFCSIPCITEYISSASSPVPSKRTCSNCSKD 141
Query: 293 ASTKKANVILPVESSKSFQEFYSTSCLSPCENNWNLKKGVFNKS---RCTICSKLA 345
K + + +E + S + F S SCLS E + S +C++C K A
Sbjct: 142 ILNPKDVISVQLEDTTSCKTFCSLSCLSSYEEKRKPFVTICTNSILTKCSMCQKTA 197
Score = 32.3 bits (72), Expect = 0.73
Identities = 29/126 (23%), Positives = 51/126 (40%), Gaps = 8/126 (6%)
Query: 166 KTGVRPFNPGRMNVAGDLFQNGEFATHHSPDSWISQSASFPSNQKQPGVDSLSPVALLRK 225
KT + + NV +L N + HS +++I SLS + +
Sbjct: 195 KTAIIQYEVKYQNVKHNLCSNACLSKFHSANNFIMNCCENCGTYCYTS-SSLSHILQMEG 253
Query: 226 QNFQPTAQQQLT----KPAKITCANCKKPLQKGQTAYQRK---GSAHLFCSTTCLSSFSH 278
Q+ + + +T KPAK + KPL+ + G LFCS C S++S
Sbjct: 254 QSHYFNSSKSITAYKQKPAKPLISVPCKPLKPSDEMIETTSDLGKTELFCSINCFSAYSK 313
Query: 279 KRTQNT 284
+ +++
Sbjct: 314 AKMESS 319
>gi|44890068 zinc finger protein 262 [Homo sapiens]
Length = 1548
Score = 73.9 bits (180), Expect = 2e-13
Identities = 55/152 (36%), Positives = 78/152 (51%), Gaps = 26/152 (17%)
Query: 218 SPVALLRKQNFQPT-AQQQLTK-----PA---KITCANCKKPLQKGQTAYQRKGSAHLFC 268
SP+A FQP+ A + K PA +++C+ CKK LQKGQTAYQRKGS LFC
Sbjct: 306 SPLAPQLTTGFQPSLASSGMNKMLPSVPATAVRVSCSGCKKILQKGQTAYQRKGSTQLFC 365
Query: 269 STTCLSSFS-------HKRTQNTRSIICKKDASTKKANVILPVESSKSFQEFYSTSCLSP 321
ST CL+ ++ T+ T S C KD K + E++ + ++F S SCLS
Sbjct: 366 STLCLTGYTVPPARPPPPLTKKTCS-SCSKDILNPKDVISAQFENTTTSKDFCSQSCLST 424
Query: 322 CENNWNLKKGVFN------KSRCTICSKLAEV 347
E KK + ++C++C K A +
Sbjct: 425 YELK---KKPIVTINTNSISTKCSMCQKNAVI 453
Score = 35.8 bits (81), Expect = 0.066
Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 7/105 (6%)
Query: 244 CANCKKPLQKGQTA---YQRKGSAHLFCSTTCLSSFSHKRTQNTRSIICKKDASTKKANV 300
C NC G Q +G + FCS++C++++ K + T +CK S+ A +
Sbjct: 486 CENCGGYCYSGSGQCHMLQIEGQSKKFCSSSCITAYKQKSAKITPCALCKSLRSS--AEM 543
Query: 301 ILPVESSKSFQEFYSTSCLSPCENNWNLKKGVFNKSRCTICSKLA 345
I S + F S +CLS GV + +C C A
Sbjct: 544 IENTNSLGKTELFCSVNCLSAYRVKMVTSAGV--QVQCNSCKTSA 586
>gi|115511046 zinc finger protein 258 [Homo sapiens]
Length = 1325
Score = 67.0 bits (162), Expect = 3e-11
Identities = 42/117 (35%), Positives = 58/117 (49%), Gaps = 15/117 (12%)
Query: 241 KITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSSFSH--------KRTQNTRSIICKKD 292
K+ C+ CKK L KGQTAY + GS LFCST C++ S K+T C KD
Sbjct: 89 KVFCSGCKKMLYKGQTAYHKTGSTQLFCSTRCITRHSSPACLPPPPKKTCTN----CSKD 144
Query: 293 ASTKKANVILPVESSKSFQEFYSTSCLSPCENNWNLKKGVFNKS---RCTICSKLAE 346
K + E+S ++F S SCLS E ++ KS +C++C K A+
Sbjct: 145 ILNPKDVITTRFENSYPSKDFCSQSCLSSYELKKKPVVTIYTKSISTKCSMCQKNAD 201
Score = 47.4 bits (111), Expect = 2e-05
Identities = 38/108 (35%), Positives = 54/108 (50%), Gaps = 19/108 (17%)
Query: 236 LTKPAKITCANCKK----PLQKGQTAYQRKGSAHLFCSTTCLSSFSHKR----TQNTRSI 287
L P K TC NC K P T ++ + FCS +CLSS+ K+ T T+SI
Sbjct: 130 LPPPPKKTCTNCSKDILNPKDVITTRFENSYPSKDFCSQSCLSSYELKKKPVVTIYTKSI 189
Query: 288 -----ICKKDAST----KKANVILPVESSKSFQEFYSTSCLSP--CEN 324
+C+K+A T K NV+ + S F +F+ST+ L+ CEN
Sbjct: 190 STKCSMCQKNADTRFEVKYQNVVHGLCSDACFSKFHSTNNLTMNCCEN 237
Score = 30.4 bits (67), Expect = 2.8
Identities = 18/70 (25%), Positives = 30/70 (42%)
Query: 262 GSAHLFCSTTCLSSFSHKRTQNTRSIICKKDASTKKANVILPVESSKSFQEFYSTSCLSP 321
G LFCS CLS++ K ++ + T S+ + F S+SC+
Sbjct: 293 GKTELFCSINCLSAYRVKTVTSSGVQVSCHSCKTSAIPQYHLAMSNGTIYSFCSSSCVVA 352
Query: 322 CENNWNLKKG 331
+N ++ KG
Sbjct: 353 FQNVFSKPKG 362
Score = 29.3 bits (64), Expect = 6.2
Identities = 34/143 (23%), Positives = 50/143 (34%), Gaps = 14/143 (9%)
Query: 202 SASFPSNQKQPGVDSLSPVALLRKQNFQPTAQQQLTKPA-KITCANCKKPLQKGQTAYQR 260
SA PS+ + SL P+A + + Q LT K+ C +C
Sbjct: 394 SAVSPSSIRGSAAASLQPLA-------EQSQQVALTHTVVKLKCQHCNHLFATKPELLFY 446
Query: 261 KGSAHLFCSTTCLSSFSHKRTQNTRSIICKKDASTKKANVILPVESSKSFQEFYSTSCLS 320
KG LFC C + K CK K+ V S + F S C
Sbjct: 447 KGKMFLFCGKNCSDEYKKKNKVVAMCDYCKLQKIIKET-----VRFSGVDKPFCSEVCKF 501
Query: 321 PCENNWNLKKGVFNKSRCTICSK 343
++ + G + K C+ CS+
Sbjct: 502 LSARDFGERWGNYCK-MCSYCSQ 523
>gi|58331268 excision repair protein ERCC6-like [Homo sapiens]
Length = 1250
Score = 31.6 bits (70), Expect = 1.2
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 12/93 (12%)
Query: 44 SRSRNSPVEDDDDDDDVVFIESIQPPSISAPAIADQRNFIFASSKNE-KPQGNY--SVIP 100
S++R + +D+DD SI P + S + + F ++ KN+ P G + S IP
Sbjct: 1021 SKARRIVSDGEDEDDSFKDTSSINPFNTSLFQFSSVKQFDASTPKNDISPPGRFFSSQIP 1080
Query: 101 P-------SSRDLASQKGNISETIVIDDEEDIE 126
S R LAS++ I+ +V+D ED+E
Sbjct: 1081 SSVNKSMNSRRSLASRRSLIN--MVLDHVEDME 1111
>gi|122937412 ubiquitin specific peptidase 45 [Homo sapiens]
Length = 814
Score = 31.6 bits (70), Expect = 1.2
Identities = 42/193 (21%), Positives = 79/193 (40%), Gaps = 27/193 (13%)
Query: 81 NFIFASSKNEKPQGNYSVIPPSSRDLASQKGNISETIVIDDEEDIETNGGAEKKSS-CFI 139
+ +FAS N + + N S S ++ + + N+ + E G + SS +
Sbjct: 469 SLMFASLMNSESRLNESPTDDSEKEASHSESNVDADSEPSESESASKQTGLFRSSSGSGV 528
Query: 140 EWGLP-------------GTKNKTNDLDFSTSSLSRSKTKTGVRPFNPGR--MNVAGDL- 183
+ P T + ++ + S L S T TG + F+ +N++ +L
Sbjct: 529 QPDGPLYPLSAGKLLYTKETDSGDKEMAEAISELRLSSTVTGDQDFDRENQPLNISNNLC 588
Query: 184 FQNGEFATHHSP-DSWISQSASFPSNQKQPGVDSLSPVALLRKQNFQPTAQQQLTKPAKI 242
F G+ +SP +++ + S S+ + K+ + S +Q T+ + L K+
Sbjct: 589 FLEGKHLRSYSPQNAFQTLSQSYITTSKECSIQSCL---------YQFTSMELLMGNNKL 639
Query: 243 TCANCKKPLQKGQ 255
C NC K QK Q
Sbjct: 640 LCENCTKNKQKYQ 652
>gi|5803229 kaiso [Homo sapiens]
Length = 672
Score = 31.2 bits (69), Expect = 1.6
Identities = 29/107 (27%), Positives = 43/107 (40%), Gaps = 18/107 (16%)
Query: 12 TEQTPALLG--NMAMATSLMDIGDSFGHPACPLVSRSRNSPVED-----------DDDDD 58
TE P G N+ + S + D+ G P+++ S + ED DDDDD
Sbjct: 135 TEPLPPDSGDKNLVIQKSKDEAQDN-GATIMPIITESFSLSAEDYEMKKIIVTDSDDDDD 193
Query: 59 DVVFIESIQPPSISAPAIADQRNFIFASSKNEKPQGNYSVIPPSSRD 105
DV+F I P + P+ N + N P V P +S +
Sbjct: 194 DVIFCSEILPTKETLPS----NNTVAQVQSNPGPVAISDVAPSASNN 236
>gi|114431248 hypothetical protein LOC205717 [Homo sapiens]
Length = 2245
Score = 30.8 bits (68), Expect = 2.1
Identities = 32/147 (21%), Positives = 56/147 (38%), Gaps = 21/147 (14%)
Query: 37 HPACPLVSRSRNSPVEDDDDDDDVVFIESIQPPSISAPAIADQRNFIFASSKNEKPQGNY 96
+P + P D ++ F++S+ P +S I QR+ + Q N
Sbjct: 1794 YPPVQSIPTGNGIPSRDSENTCHQSFMQSLLAPHLSDQVIGSQRSL-------SEHQRNT 1846
Query: 97 SVIPPSSRDLASQKGNISETIVIDDEEDIETNGGAEKKSSCFIEWGLPGTKNKTNDLDFS 156
P S+ + N T + I ++ + SC + G T+N T ++ FS
Sbjct: 1847 QCGPSSAIEY-----NCPPT---HENVHIRRESESQNRESCDMSLGAINTRNSTLNIPFS 1898
Query: 157 TSSLS------RSKTKTGVRPFNPGRM 177
+SS S + V+ NP R+
Sbjct: 1899 SSSSSGDIQGRNTSPNVSVQKSNPMRI 1925
>gi|54112403 chromodomain helicase DNA binding protein 7 [Homo
sapiens]
Length = 2997
Score = 30.8 bits (68), Expect = 2.1
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 20/102 (19%)
Query: 68 PPSISAPAIADQRNFIFASSKNEKPQGNYSVIPPSSRDLASQKGNISETIVIDDEEDIET 127
PP IS+ I D+R A K E+P+ P++++ K EE+ ET
Sbjct: 2154 PPVISSAHIQDERVLEQAEGKVEEPEN------PAAKEKCEGK-----------EEEEET 2196
Query: 128 NG-GAEKKSSCFIEWGLPGTKNKTNDLDFSTSSLSRSKTKTG 168
+G G E K C E KN+ ++ + S+S ++ G
Sbjct: 2197 DGSGKESKQECEAE--ASSVKNELKGVEVGADTGSKSISEKG 2236
>gi|110735439 Werner syndrome protein [Homo sapiens]
Length = 1432
Score = 30.4 bits (67), Expect = 2.8
Identities = 30/153 (19%), Positives = 63/153 (41%), Gaps = 4/153 (2%)
Query: 1 MEKCSVGGLELTEQTPALLGNMAMATSLMDIGDSFGHPACPLVSRSRNSPVEDDDDDDDV 60
ME+ + L++TE +L + L DI P + + S V + D+D ++
Sbjct: 387 MERACLMSLDITEHELQILEQQSQEEYLSDIAYKSTEHLSPNDNENDTSYVIESDEDLEM 446
Query: 61 VFIESIQP---PSISAPAIADQRNFIFASSKNEKPQGNYSVIPPSSRDLASQKGNISETI 117
++ + P + ++ I + K+ + + +V P S+ L ++ T
Sbjct: 447 EMLKHLSPNDNENDTSYVIESDEDLEMEMLKSLENLNSGTVEPTHSKCLKMERNLGLPTK 506
Query: 118 VIDDEEDIETNGGAEKKSSCFIEWGLPGTKNKT 150
+++++ E N G E F+ W P + T
Sbjct: 507 EEEEDDENEANEGEEDDDKDFL-WPAPNEEQVT 538
>gi|169218196 PREDICTED: similar to Werner syndrome ATP-dependent
helicase, partial [Homo sapiens]
Length = 1140
Score = 30.4 bits (67), Expect = 2.8
Identities = 30/153 (19%), Positives = 63/153 (41%), Gaps = 4/153 (2%)
Query: 1 MEKCSVGGLELTEQTPALLGNMAMATSLMDIGDSFGHPACPLVSRSRNSPVEDDDDDDDV 60
ME+ + L++TE +L + L DI P + + S V + D+D ++
Sbjct: 95 MERACLMSLDITEHELQILEQQSQEEYLSDIAYKSTEHLSPNDNENDTSYVIESDEDLEM 154
Query: 61 VFIESIQP---PSISAPAIADQRNFIFASSKNEKPQGNYSVIPPSSRDLASQKGNISETI 117
++ + P + ++ I + K+ + + +V P S+ L ++ T
Sbjct: 155 EMLKHLSPNDNENDTSYVIESDEDLEMEMLKSLENLNSGTVEPTHSKCLKMERNLGLPTK 214
Query: 118 VIDDEEDIETNGGAEKKSSCFIEWGLPGTKNKT 150
+++++ E N G E F+ W P + T
Sbjct: 215 EEEEDDENEANEGEEDDDKDFL-WPAPNEEQVT 246
>gi|239750815 PREDICTED: StAR-related lipid transfer (START) domain
containing 9 [Homo sapiens]
Length = 4614
Score = 30.4 bits (67), Expect = 2.8
Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 10/64 (15%)
Query: 202 SASFPSNQKQPGVDSLSPVALLRKQNFQPTAQQQLTKPAKITCANCKKPLQKGQTAYQRK 261
S F + P D++ P AL R PT Q C CK+ + G T R
Sbjct: 2755 STGFEEGRASPKQDTILPGALTRVALEAPTQQ----------CVQCKESVGSGLTEVCRA 2804
Query: 262 GSAH 265
GS H
Sbjct: 2805 GSKH 2808
>gi|239745175 PREDICTED: StAR-related lipid transfer (START) domain
containing 9 [Homo sapiens]
Length = 4614
Score = 30.4 bits (67), Expect = 2.8
Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 10/64 (15%)
Query: 202 SASFPSNQKQPGVDSLSPVALLRKQNFQPTAQQQLTKPAKITCANCKKPLQKGQTAYQRK 261
S F + P D++ P AL R PT Q C CK+ + G T R
Sbjct: 2755 STGFEEGRASPKQDTILPGALTRVALEAPTQQ----------CVQCKESVGSGLTEVCRA 2804
Query: 262 GSAH 265
GS H
Sbjct: 2805 GSKH 2808
>gi|62177127 myosin heavy chain Myr 8 [Homo sapiens]
Length = 1858
Score = 30.4 bits (67), Expect = 2.8
Identities = 27/107 (25%), Positives = 41/107 (38%), Gaps = 16/107 (14%)
Query: 115 ETIVIDDEEDIETNGGAEKKSSCFIEWGLPGTKNKTNDLDFSTSSLSRSKTKTGVRPFNP 174
+ +VI + DI A + E P K K + R+ K+G R F+P
Sbjct: 1197 DALVIQNASDI-----ARENDRLRSEMNAPYHKEKLEVRNMQEEGSKRTDDKSGPRHFHP 1251
Query: 175 GRMNVAGDLFQNGEFATHHSPDSW---------ISQSASFPSNQKQP 212
M+V + G+ P W + S+S PS +KQP
Sbjct: 1252 SSMSVCAAVDGLGQCLV--GPSIWSPSLHSVFSMDDSSSLPSPRKQP 1296
>gi|4505001 LIM domain kinase 1 [Homo sapiens]
Length = 647
Score = 29.6 bits (65), Expect = 4.7
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 244 CANCKKPLQKGQTAYQRKGSAHLFC--STTCLSSFSHKRTQNTRSIICKKD 292
CA+C + + GQ H C C +S SH+ + + CKKD
Sbjct: 25 CASCGQRIYDGQYLQALNADWHADCFRCCDCSASLSHQYYEKDGQLFCKKD 75
>gi|28872812 MORC family CW-type zinc finger 3 [Homo sapiens]
Length = 939
Score = 29.6 bits (65), Expect = 4.7
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Query: 42 LVSRSRNSPVEDDDDDDDVVFIESIQPPSISAPAIADQRNFIFASSKNEKPQGNYSVIPP 101
L S+ NS + DDDD+DV+ +E P PA+ + S ++ QG V
Sbjct: 559 LSSQFENSVYKGDDDDEDVIILEENSTPK---PAV--DHDIDMKSEQSHVEQGGVQVEFV 613
Query: 102 SSRDLASQKGNIS 114
+ Q G+ S
Sbjct: 614 GDSEPCGQTGSTS 626
>gi|239756270 PREDICTED: StAR-related lipid transfer (START) domain
containing 9 [Homo sapiens]
Length = 4614
Score = 29.3 bits (64), Expect = 6.2
Identities = 20/64 (31%), Positives = 24/64 (37%), Gaps = 10/64 (15%)
Query: 202 SASFPSNQKQPGVDSLSPVALLRKQNFQPTAQQQLTKPAKITCANCKKPLQKGQTAYQRK 261
S F + P D + P AL R PT Q C CK+ + G T R
Sbjct: 2755 STGFEEGRASPKQDIILPGALTRVALEAPTQQ----------CVQCKESVGSGLTEVCRA 2804
Query: 262 GSAH 265
GS H
Sbjct: 2805 GSKH 2808
>gi|46359075 zinc finger protein 423 [Homo sapiens]
Length = 1284
Score = 28.9 bits (63), Expect = 8.1
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 12/100 (12%)
Query: 21 NMAMATSLMDIGDSFGHPACPLVS----RSRNSPV------EDDDD--DDDVVFIESIQP 68
++A +S+ G G P C + RNS EDD+D D+ + + Q
Sbjct: 15 SLAWDSSVTAAGGLEGEPECDQKTSRALEDRNSVTSQEERNEDDEDMEDESIYTCDHCQQ 74
Query: 69 PSISAPAIADQRNFIFASSKNEKPQGNYSVIPPSSRDLAS 108
S + D R ++ PQ ++ PSS+D+AS
Sbjct: 75 DFESLADLTDHRAHRCPGDGDDDPQLSWVASSPSSKDVAS 114
>gi|157785656 nudix motif 7 [Homo sapiens]
Length = 238
Score = 28.9 bits (63), Expect = 8.1
Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 14/102 (13%)
Query: 70 SISAPAIADQRNFIFASSKNEKPQGNYSVIPPSSRDLASQKGNISETIVIDDEEDIETNG 129
S+ A A R + + P YSV+ P L +++G + + E+ G
Sbjct: 14 SLLDDAKARLRKYDIGGKYSHLPYNKYSVLLP----LVAKEGKLHLLFTVRSEKLRRAPG 69
Query: 130 GAEKKSSCFIEWGLPGTKNKTNDLDFSTSSLSRSKTKTGVRP 171
CF PG K D+D + ++L ++ + G+RP
Sbjct: 70 EV-----CF-----PGGKRDPTDMDDAATALREAQEEVGLRP 101
>gi|12738834 PRAME family member 2 [Homo sapiens]
Length = 474
Score = 28.9 bits (63), Expect = 8.1
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
Query: 212 PGVDSLS--PVALLRKQNFQPTAQQQLTKPAKITCANCKKPLQKG-------QTAYQRKG 262
PG +LS P A+ ++Q + + +P K+ C K + + Q YQR+G
Sbjct: 117 PGAWALSCFPEAMSKRQTAEDCPRTGEHQPLKVFIDICLKEIPQDECLRYLFQWVYQRRG 176
Query: 263 SAHLFCS 269
HL CS
Sbjct: 177 LVHLCCS 183
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.130 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,411,570
Number of Sequences: 37866
Number of extensions: 702749
Number of successful extensions: 2415
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 2353
Number of HSP's gapped (non-prelim): 58
length of query: 382
length of database: 18,247,518
effective HSP length: 104
effective length of query: 278
effective length of database: 14,309,454
effective search space: 3978028212
effective search space used: 3978028212
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.