Guide to the Human Genome
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Search of human proteins with 88959164

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|88959164 PREDICTED: similar to LLP homolog [Homo sapiens]
         (129 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169164505 PREDICTED: similar to LLP homolog [Homo sapiens]         263   2e-71
gi|88959164 PREDICTED: similar to LLP homolog [Homo sapiens]          263   2e-71
gi|88953955 PREDICTED: similar to LLP homolog [Homo sapiens]          263   2e-71
gi|14150124 LLP homolog [Homo sapiens]                                248   1e-66
gi|147905592 coiled-coil domain containing 102B [Homo sapiens]         38   0.002
gi|148233522 coiled-coil domain containing 102B [Homo sapiens]         38   0.002
gi|151301171 RNA polymerase II transcription factor TAFII140 [Ho...    38   0.003
gi|13129094 ashwin [Homo sapiens]                                      36   0.007
gi|224593756 hypothetical protein LOC164127 [Homo sapiens]             34   0.028
gi|21450705 leucine rich repeat containing 45 [Homo sapiens]           34   0.028
gi|33620716 retinoblastoma-binding protein 6 isoform 2 [Homo sap...    34   0.037
gi|33620769 retinoblastoma-binding protein 6 isoform 1 [Homo sap...    34   0.037
gi|239754909 PREDICTED: hypothetical protein [Homo sapiens]            33   0.048
gi|239749449 PREDICTED: hypothetical protein [Homo sapiens]            33   0.048
gi|30089940 Golgi autoantigen, golgin subfamily a, 3 [Homo sapiens]    33   0.048
gi|218083720 coiled-coil domain containing 121 isoform 2 [Homo s...    33   0.062
gi|218083716 coiled-coil domain containing 121 isoform 1 [Homo s...    33   0.062
gi|39979626 coiled-coil domain containing 121 isoform 3 [Homo sa...    33   0.062
gi|46519147 ankyrin repeat and KH domain containing 1 isoform 1 ...    33   0.062
gi|37620163 ANKHD1-EIF4EBP3 protein [Homo sapiens]                     33   0.062
gi|9966799 UTP3, small subunit processome component [Homo sapiens]     33   0.081
gi|4885399 structural maintenance of chromosomes 3 [Homo sapiens]      32   0.11 
gi|84043963 eukaryotic translation initiation factor 5B [Homo sa...    32   0.11 
gi|5729913 mannosidase, alpha, class 1A, member 2 [Homo sapiens]       32   0.14 
gi|239745153 PREDICTED: similar to Putative golgin subfamily A m...    32   0.18 
gi|239745127 PREDICTED: similar to Putative golgin subfamily A m...    32   0.18 
gi|41406064 myosin, heavy polypeptide 10, non-muscle [Homo sapiens]    32   0.18 
gi|41152076 steroid-sensitive protein 1 [Homo sapiens]                 32   0.18 
gi|41152074 steroid-sensitive protein 1 [Homo sapiens]                 32   0.18 
gi|42560244 peptidylprolyl isomerase G [Homo sapiens]                  32   0.18 

>gi|169164505 PREDICTED: similar to LLP homolog [Homo sapiens]
          Length = 129

 Score =  263 bits (673), Expect = 2e-71
 Identities = 129/129 (100%), Positives = 129/129 (100%)

Query: 1   MAKSLWSKWKRKMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQE 60
           MAKSLWSKWKRKMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQE
Sbjct: 1   MAKSLWSKWKRKMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQE 60

Query: 61  KMQCEVKDEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAKA 120
           KMQCEVKDEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAKA
Sbjct: 61  KMQCEVKDEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAKA 120

Query: 121 VKVAKGLAW 129
           VKVAKGLAW
Sbjct: 121 VKVAKGLAW 129


>gi|88959164 PREDICTED: similar to LLP homolog [Homo sapiens]
          Length = 129

 Score =  263 bits (673), Expect = 2e-71
 Identities = 129/129 (100%), Positives = 129/129 (100%)

Query: 1   MAKSLWSKWKRKMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQE 60
           MAKSLWSKWKRKMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQE
Sbjct: 1   MAKSLWSKWKRKMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQE 60

Query: 61  KMQCEVKDEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAKA 120
           KMQCEVKDEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAKA
Sbjct: 61  KMQCEVKDEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAKA 120

Query: 121 VKVAKGLAW 129
           VKVAKGLAW
Sbjct: 121 VKVAKGLAW 129


>gi|88953955 PREDICTED: similar to LLP homolog [Homo sapiens]
          Length = 129

 Score =  263 bits (673), Expect = 2e-71
 Identities = 129/129 (100%), Positives = 129/129 (100%)

Query: 1   MAKSLWSKWKRKMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQE 60
           MAKSLWSKWKRKMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQE
Sbjct: 1   MAKSLWSKWKRKMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQE 60

Query: 61  KMQCEVKDEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAKA 120
           KMQCEVKDEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAKA
Sbjct: 61  KMQCEVKDEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAKA 120

Query: 121 VKVAKGLAW 129
           VKVAKGLAW
Sbjct: 121 VKVAKGLAW 129


>gi|14150124 LLP homolog [Homo sapiens]
          Length = 129

 Score =  248 bits (632), Expect = 1e-66
 Identities = 123/129 (95%), Positives = 125/129 (96%)

Query: 1   MAKSLWSKWKRKMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQE 60
           MAKSL SKWKRKMRAEKRKKNAP+E SRLKSILKLD DVLMKDVQEIATVVVPKPKHCQE
Sbjct: 1   MAKSLRSKWKRKMRAEKRKKNAPKEASRLKSILKLDGDVLMKDVQEIATVVVPKPKHCQE 60

Query: 61  KMQCEVKDEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAKA 120
           KMQCEVKDEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRK K+KAKA
Sbjct: 61  KMQCEVKDEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKGKSKAKA 120

Query: 121 VKVAKGLAW 129
           VKVAKGLAW
Sbjct: 121 VKVAKGLAW 129


>gi|147905592 coiled-coil domain containing 102B [Homo sapiens]
          Length = 513

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 30/121 (24%), Positives = 64/121 (52%), Gaps = 11/121 (9%)

Query: 2   AKSLWSKWKRKMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPK--HCQ 59
           A SLW KWK     E+ K++ P+ V     +L   +D    ++QE++  +  + K  + +
Sbjct: 291 ALSLW-KWKY----EELKESKPKNVKEFDILLGQHND----EMQELSGNIKEESKSQNSK 341

Query: 60  EKMQCEVKDEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAK 119
           +++ CE++ E + ++ E   + +K+ +L++  Q     N+R + ++K   E   +KN+  
Sbjct: 342 DRVICELRAELERLQAENTSEWDKREILEREKQGLERENRRLKIQVKEMEELLDKKNRLS 401

Query: 120 A 120
           A
Sbjct: 402 A 402



 Score = 26.9 bits (58), Expect = 4.5
 Identities = 24/119 (20%), Positives = 50/119 (42%), Gaps = 20/119 (16%)

Query: 7   SKWKRKMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQEKMQCEV 66
           S+W ++   E+ K+    E  RLK        + +K+++E+            +K +   
Sbjct: 361 SEWDKREILEREKQGLERENRRLK--------IQVKEMEEL----------LDKKNRLSA 402

Query: 67  KDEKDDMKM-ETDIKRNKKTLLD-QHGQYPIWMNQRQRKRLKAKREKRKEKNKAKAVKV 123
             +  D KM + D++   + LL+ QH  Y +    +           R ++N+A+  K+
Sbjct: 403 NSQSPDFKMSQIDLQEKNQELLNLQHAYYKLNRQYQANIAELTHANNRVDQNEAEVKKL 461


>gi|148233522 coiled-coil domain containing 102B [Homo sapiens]
          Length = 513

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 30/121 (24%), Positives = 64/121 (52%), Gaps = 11/121 (9%)

Query: 2   AKSLWSKWKRKMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPK--HCQ 59
           A SLW KWK     E+ K++ P+ V     +L   +D    ++QE++  +  + K  + +
Sbjct: 291 ALSLW-KWKY----EELKESKPKNVKEFDILLGQHND----EMQELSGNIKEESKSQNSK 341

Query: 60  EKMQCEVKDEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAK 119
           +++ CE++ E + ++ E   + +K+ +L++  Q     N+R + ++K   E   +KN+  
Sbjct: 342 DRVICELRAELERLQAENTSEWDKREILEREKQGLERENRRLKIQVKEMEELLDKKNRLS 401

Query: 120 A 120
           A
Sbjct: 402 A 402



 Score = 26.9 bits (58), Expect = 4.5
 Identities = 24/119 (20%), Positives = 50/119 (42%), Gaps = 20/119 (16%)

Query: 7   SKWKRKMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQEKMQCEV 66
           S+W ++   E+ K+    E  RLK        + +K+++E+            +K +   
Sbjct: 361 SEWDKREILEREKQGLERENRRLK--------IQVKEMEEL----------LDKKNRLSA 402

Query: 67  KDEKDDMKM-ETDIKRNKKTLLD-QHGQYPIWMNQRQRKRLKAKREKRKEKNKAKAVKV 123
             +  D KM + D++   + LL+ QH  Y +    +           R ++N+A+  K+
Sbjct: 403 NSQSPDFKMSQIDLQEKNQELLNLQHAYYKLNRQYQANIAELTHANNRVDQNEAEVKKL 461


>gi|151301171 RNA polymerase II transcription factor TAFII140 [Homo
           sapiens]
          Length = 929

 Score = 37.7 bits (86), Expect = 0.003
 Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 11/119 (9%)

Query: 8   KWKRKMRAEKRKKNAPEEVSRLKSI-LKLDDDVLMKDVQEIATVVVP--KPKHCQEKMQC 64
           K K K R +K K  AP  V   K + L L        V  +   ++P    K  +EK + 
Sbjct: 637 KVKDKGREDKMKAPAPPLVLPPKELALPLFSPATASRVPAMLPSLLPVLPEKLFEEKEKV 696

Query: 65  EVKDEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAKAVKV 123
           + K++K D K +   K  +K   ++         + + KR + KREK KEK+K + +KV
Sbjct: 697 KEKEKKKDKKEKKKKKEKEKEKKEKE--------REKEKREREKREKEKEKHKHEKIKV 747



 Score = 25.8 bits (55), Expect = 9.9
 Identities = 30/130 (23%), Positives = 62/130 (47%), Gaps = 14/130 (10%)

Query: 3   KSLWSKWKRKMRAEKRKKNAPEEVSRLKSILKLDDDVLMK--DVQEIATVVVPKPKHCQE 60
           K L  + K KM+ ++++++   E  + K   K  D V  K  D +       P  +  +E
Sbjct: 523 KKLKKELKTKMKKKEKQRDREREKDKNKDKSKEKDKVKEKEKDKETGRETKYPWKEFLKE 582

Query: 61  K----MQCEVKDEKD---DMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRK 113
           +     + ++K+ +D    +K++  + R +K   ++H       ++ + K+ K KREK K
Sbjct: 583 EEADPYKFKIKEFEDVDPKVKLKDGLVRKEK---EKHKDKK--KDREKGKKDKDKREKEK 637

Query: 114 EKNKAKAVKV 123
            K+K +  K+
Sbjct: 638 VKDKGREDKM 647


>gi|13129094 ashwin [Homo sapiens]
          Length = 232

 Score = 36.2 bits (82), Expect = 0.007
 Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 6/65 (9%)

Query: 69  EKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQ------RKRLKAKREKRKEKNKAKAVK 122
           E+ ++ +ETD++ NK +L D + Q+ I + QR        K ++ KRE+ + KN+ K   
Sbjct: 32  EQKNIAVETDVRVNKDSLTDLYVQHAIPLPQRDLPKNRWGKMMEKKREQHEIKNETKRSS 91

Query: 123 VAKGL 127
              GL
Sbjct: 92  TVDGL 96


>gi|224593756 hypothetical protein LOC164127 [Homo sapiens]
          Length = 623

 Score = 34.3 bits (77), Expect = 0.028
 Identities = 28/116 (24%), Positives = 58/116 (50%), Gaps = 13/116 (11%)

Query: 3   KSLWSKWKRKMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQEKM 62
           +SL S+  + + + K  ++   +V  LKS  KL++ V+    Q+I  +V+ + K  Q   
Sbjct: 219 ESLASRDSQPLASSKEMRSPHTQV--LKS--KLEEVVVSSQDQQIVALVLTRLKKAQRIR 274

Query: 63  QCEVKDEK-------DDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREK 111
           + + +  K        D K++  ++R ++ LL Q  +   W  + QRK L++  ++
Sbjct: 275 ELQQQAAKAWEELKRSDQKVQMTLERERRLLLRQSQEQ--WQEKEQRKTLQSPEQR 328


>gi|21450705 leucine rich repeat containing 45 [Homo sapiens]
          Length = 670

 Score = 34.3 bits (77), Expect = 0.028
 Identities = 26/109 (23%), Positives = 52/109 (47%), Gaps = 10/109 (9%)

Query: 12  KMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQEKMQCEVKDEKD 71
           KMRA + ++    E  R +  L+  + + +K+V+ +   +    K  QE++Q   + E  
Sbjct: 405 KMRAIQAEERLDMEKRRCRQSLEDSESLRIKEVEHMTRHLEESEKAMQERVQ---RLEAA 461

Query: 72  DMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAKA 120
            + +E ++ R K   L + G       Q + + +KAK + R E+ +  A
Sbjct: 462 RLSLEEELSRVKAAALSERG-------QAEEELIKAKSQARLEEQQRLA 503


>gi|33620716 retinoblastoma-binding protein 6 isoform 2 [Homo sapiens]
          Length = 1758

 Score = 33.9 bits (76), Expect = 0.037
 Identities = 31/113 (27%), Positives = 46/113 (40%), Gaps = 7/113 (6%)

Query: 10   KRKMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQEKMQCE-VKD 68
            +R  R+E   K A EE  +  +          KD +   T      K  +E  + + VK+
Sbjct: 1016 ERSPRSEPPIKKAKEETPKTDNTKSSSSS--QKDEKITGTPRKAHSKSAKEHQETKPVKE 1073

Query: 69   EKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAKAV 121
            EK       D+K  K T  ++  + P      + K L  K EKRK K + K V
Sbjct: 1074 EKVKKDYSKDVKSEKLTTKEEKAKKP----NEKNKPLDNKGEKRKRKTEEKGV 1122



 Score = 27.3 bits (59), Expect = 3.4
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 60   EKMQCEVKDEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQR-KRLKAKREKRKEKNKA 118
            E    + K +K + K     K++KK       +  +  +Q+ + K+ K+K+ K KEK K 
Sbjct: 1688 ESQDSKKKKKKKEKKKHKKHKKHKKHKKHAGTEVELEKSQKHKHKKKKSKKNKDKEKEKE 1747

Query: 119  K 119
            K
Sbjct: 1748 K 1748


>gi|33620769 retinoblastoma-binding protein 6 isoform 1 [Homo sapiens]
          Length = 1792

 Score = 33.9 bits (76), Expect = 0.037
 Identities = 31/113 (27%), Positives = 46/113 (40%), Gaps = 7/113 (6%)

Query: 10   KRKMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQEKMQCE-VKD 68
            +R  R+E   K A EE  +  +          KD +   T      K  +E  + + VK+
Sbjct: 1050 ERSPRSEPPIKKAKEETPKTDNTKSSSSS--QKDEKITGTPRKAHSKSAKEHQETKPVKE 1107

Query: 69   EKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAKAV 121
            EK       D+K  K T  ++  + P      + K L  K EKRK K + K V
Sbjct: 1108 EKVKKDYSKDVKSEKLTTKEEKAKKP----NEKNKPLDNKGEKRKRKTEEKGV 1156



 Score = 27.3 bits (59), Expect = 3.4
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 60   EKMQCEVKDEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQR-KRLKAKREKRKEKNKA 118
            E    + K +K + K     K++KK       +  +  +Q+ + K+ K+K+ K KEK K 
Sbjct: 1722 ESQDSKKKKKKKEKKKHKKHKKHKKHKKHAGTEVELEKSQKHKHKKKKSKKNKDKEKEKE 1781

Query: 119  K 119
            K
Sbjct: 1782 K 1782


>gi|239754909 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 245

 Score = 33.5 bits (75), Expect = 0.048
 Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 14/117 (11%)

Query: 10  KRKMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQEKMQCEVKDE 69
           ++K R EK  K   E+  R K   K          +   T    K +  +E+ + E + E
Sbjct: 97  RKKRRREKENKEGEEKEKRKKKEKK----------ERGRTSKEGKERERKEERKREERKE 146

Query: 70  ----KDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAKAVK 122
               K++ + E + K  KK    Q G+      +++RK  K +   RKE+ K +  K
Sbjct: 147 RERKKEEREKERERKERKKRERKQVGEKEEERKEKERKERKKRERNRKERKKERERK 203



 Score = 28.5 bits (62), Expect = 1.5
 Identities = 19/87 (21%), Positives = 43/87 (49%), Gaps = 11/87 (12%)

Query: 40  LMKDVQEIATVVVPKPKHCQEKMQCEVKDEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQ 99
           L  ++Q ++   + KP   Q   Q E+++ + +++   + K+ +++             +
Sbjct: 13  LNTELQMVSCSHISKPC-TQPGWQSEIREREREIETRKEGKKERESE----------RKK 61

Query: 100 RQRKRLKAKREKRKEKNKAKAVKVAKG 126
            +R+R K KRE+ KE+ + +  K  KG
Sbjct: 62  ERREREKRKREREKERKRERGKKEKKG 88



 Score = 26.6 bits (57), Expect = 5.8
 Identities = 24/108 (22%), Positives = 51/108 (47%), Gaps = 15/108 (13%)

Query: 10  KRKMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQEKMQCEVKDE 69
           K + R E+RK+   +E  R K   + + +   +  +E   V        +++ + + K+ 
Sbjct: 131 KERERKEERKREERKERERKKEEREKERERKERKKRERKQVG-------EKEEERKEKER 183

Query: 70  KDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNK 117
           K+  K E + K  KK    +         +R+RK+ + K+E+RK++ +
Sbjct: 184 KERKKRERNRKERKKERERKE--------RRERKKERKKKEERKKERQ 223


>gi|239749449 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 275

 Score = 33.5 bits (75), Expect = 0.048
 Identities = 27/112 (24%), Positives = 55/112 (49%), Gaps = 7/112 (6%)

Query: 8   KWKRKMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQEKMQCEVK 67
           K +RK + EK+K+   +   R +   K   +   ++ Q        + K  ++K + E K
Sbjct: 92  KERRKRKKEKKKRERKQRGRRERKKKKERKERERENKQRRER---KRKKRRKKKRRKERK 148

Query: 68  DEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAK 119
            EK+  K E   K+ KK   ++  +     N+++RK+ + ++E+R+ K + K
Sbjct: 149 REKERGKRERKRKKRKKEEREKKRE----RNRKERKKERERKERRERKKERK 196



 Score = 30.4 bits (67), Expect = 0.40
 Identities = 28/113 (24%), Positives = 54/113 (47%), Gaps = 9/113 (7%)

Query: 10  KRKMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQEKMQCEVKDE 69
           KRK R EK++K   E+  R +   K   +   +  +E       K +  + K + E K +
Sbjct: 78  KRKER-EKQRKERREKERRKRKKEKKKRERKQRGRRERKKKKERKERERENKQRRERKRK 136

Query: 70  KDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAKAVK 122
           K   K     ++ +K    + G+      ++++KR K +REK++E+N+ +  K
Sbjct: 137 KRRKKKRRKERKREK----ERGK----RERKRKKRKKEEREKKRERNRKERKK 181



 Score = 27.7 bits (60), Expect = 2.6
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 4/59 (6%)

Query: 67  KDEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAKAVKVAK 125
           ++ + + K E   K  KK    + G+      +R+RK  + +R++R+EK + K  K  K
Sbjct: 48  REREKERKRERGKKEKKKRKKRERGKE----RERKRKEREKQRKERREKERRKRKKEKK 102



 Score = 25.8 bits (55), Expect = 9.9
 Identities = 25/116 (21%), Positives = 48/116 (41%), Gaps = 5/116 (4%)

Query: 10  KRKMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQEKMQCEVKDE 69
           K +   EKRK+   +E  R +   +       +  +E       + K  +E+ + E +  
Sbjct: 38  KERREREKRKREREKERKRERGKKEKKKRKKRERGKERERKRKEREKQRKERREKERRKR 97

Query: 70  KDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAKAVKVAK 125
           K + K     KR +K    +  +      +R+R+  + +  KRK++ K K  K  K
Sbjct: 98  KKEKK-----KRERKQRGRRERKKKKERKERERENKQRRERKRKKRRKKKRRKERK 148


>gi|30089940 Golgi autoantigen, golgin subfamily a, 3 [Homo sapiens]
          Length = 1498

 Score = 33.5 bits (75), Expect = 0.048
 Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 3/102 (2%)

Query: 25   EVSRLKSILKLDDDVLMKDV---QEIATVVVPKPKHCQEKMQCEVKDEKDDMKMETDIKR 81
            E+  LK  L L +    K++   Q++   V  + +  QE +    KD+       +++K 
Sbjct: 1299 EIQSLKQQLDLTEQQGRKELEGLQQLLQNVKSELEMAQEDLSMTQKDKFMLQAKVSELKN 1358

Query: 82   NKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAKAVKV 123
            N KTLL Q+ Q  + + +   K  K  + +    N A  +K+
Sbjct: 1359 NMKTLLQQNQQLKLDLRRGAAKTRKEPKGEASSSNPATPIKI 1400


>gi|218083720 coiled-coil domain containing 121 isoform 2 [Homo
           sapiens]
          Length = 440

 Score = 33.1 bits (74), Expect = 0.062
 Identities = 33/131 (25%), Positives = 67/131 (51%), Gaps = 11/131 (8%)

Query: 3   KSLWSKWKRKM-RAEKRKKNAP----EEVSRLKSILKLDDDV---LMKDVQEIATVVVPK 54
           + +W+ + +K    E+R++ +     E++S LK+ L   +++   L + +Q +  + + K
Sbjct: 217 EKVWNSYLQKSGEIERRRQESASRYAEQISVLKTALLQKENIQSSLKRKLQAMRDIAILK 276

Query: 55  PKHCQEKMQCEVKDEKDDMKMETDIK-RNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRK 113
            K  QEK    +++E   ++ ET  K R  +  L Q  +          +RL  KR++R+
Sbjct: 277 EK--QEKEIQTLQEETKKVQAETASKTREVQAQLLQEKRLLEKQLSEPDRRLLGKRKRRE 334

Query: 114 EKNKAKAVKVA 124
              KA+A+K+A
Sbjct: 335 LNMKAQALKLA 345


>gi|218083716 coiled-coil domain containing 121 isoform 1 [Homo
           sapiens]
          Length = 442

 Score = 33.1 bits (74), Expect = 0.062
 Identities = 33/131 (25%), Positives = 67/131 (51%), Gaps = 11/131 (8%)

Query: 3   KSLWSKWKRKM-RAEKRKKNAP----EEVSRLKSILKLDDDV---LMKDVQEIATVVVPK 54
           + +W+ + +K    E+R++ +     E++S LK+ L   +++   L + +Q +  + + K
Sbjct: 219 EKVWNSYLQKSGEIERRRQESASRYAEQISVLKTALLQKENIQSSLKRKLQAMRDIAILK 278

Query: 55  PKHCQEKMQCEVKDEKDDMKMETDIK-RNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRK 113
            K  QEK    +++E   ++ ET  K R  +  L Q  +          +RL  KR++R+
Sbjct: 279 EK--QEKEIQTLQEETKKVQAETASKTREVQAQLLQEKRLLEKQLSEPDRRLLGKRKRRE 336

Query: 114 EKNKAKAVKVA 124
              KA+A+K+A
Sbjct: 337 LNMKAQALKLA 347


>gi|39979626 coiled-coil domain containing 121 isoform 3 [Homo
           sapiens]
          Length = 278

 Score = 33.1 bits (74), Expect = 0.062
 Identities = 33/131 (25%), Positives = 67/131 (51%), Gaps = 11/131 (8%)

Query: 3   KSLWSKWKRKM-RAEKRKKNAP----EEVSRLKSILKLDDDV---LMKDVQEIATVVVPK 54
           + +W+ + +K    E+R++ +     E++S LK+ L   +++   L + +Q +  + + K
Sbjct: 55  EKVWNSYLQKSGEIERRRQESASRYAEQISVLKTALLQKENIQSSLKRKLQAMRDIAILK 114

Query: 55  PKHCQEKMQCEVKDEKDDMKMETDIK-RNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRK 113
            K  QEK    +++E   ++ ET  K R  +  L Q  +          +RL  KR++R+
Sbjct: 115 EK--QEKEIQTLQEETKKVQAETASKTREVQAQLLQEKRLLEKQLSEPDRRLLGKRKRRE 172

Query: 114 EKNKAKAVKVA 124
              KA+A+K+A
Sbjct: 173 LNMKAQALKLA 183


>gi|46519147 ankyrin repeat and KH domain containing 1 isoform 1 [Homo
            sapiens]
          Length = 2542

 Score = 33.1 bits (74), Expect = 0.062
 Identities = 22/103 (21%), Positives = 44/103 (42%), Gaps = 18/103 (17%)

Query: 17   KRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQEKMQCEVKDEKDDMKME 76
            K     P ++  ++ I  + D  L+K   +    +V      +++   E       +  E
Sbjct: 1379 KEVNQFPSDIECMRYIATITDKELLKKCHQCVETIVK----AKDQQAAEANKNASILLKE 1434

Query: 77   TDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAK 119
             D++++++              + +++ L AKREKRKEK K K
Sbjct: 1435 LDLEKSRE--------------ESRKQALAAKREKRKEKRKKK 1463



 Score = 27.3 bits (59), Expect = 3.4
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 8/64 (12%)

Query: 12  KMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQEKMQCEVKDEKD 71
           K + E+ KKN  E+V + K IL        K++Q++   +  K +    K   E K +KD
Sbjct: 814 KDKIEELKKNREEQVQKKKKIL--------KELQKVERQLQMKTQQQFTKEYLETKGQKD 865

Query: 72  DMKM 75
            + +
Sbjct: 866 TVSL 869


>gi|37620163 ANKHD1-EIF4EBP3 protein [Homo sapiens]
          Length = 2617

 Score = 33.1 bits (74), Expect = 0.062
 Identities = 22/103 (21%), Positives = 44/103 (42%), Gaps = 18/103 (17%)

Query: 17   KRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQEKMQCEVKDEKDDMKME 76
            K     P ++  ++ I  + D  L+K   +    +V      +++   E       +  E
Sbjct: 1379 KEVNQFPSDIECMRYIATITDKELLKKCHQCVETIVK----AKDQQAAEANKNASILLKE 1434

Query: 77   TDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAK 119
             D++++++              + +++ L AKREKRKEK K K
Sbjct: 1435 LDLEKSRE--------------ESRKQALAAKREKRKEKRKKK 1463



 Score = 27.3 bits (59), Expect = 3.4
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 8/64 (12%)

Query: 12  KMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQEKMQCEVKDEKD 71
           K + E+ KKN  E+V + K IL        K++Q++   +  K +    K   E K +KD
Sbjct: 814 KDKIEELKKNREEQVQKKKKIL--------KELQKVERQLQMKTQQQFTKEYLETKGQKD 865

Query: 72  DMKM 75
            + +
Sbjct: 866 TVSL 869


>gi|9966799 UTP3, small subunit processome component [Homo sapiens]
          Length = 479

 Score = 32.7 bits (73), Expect = 0.081
 Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 14/101 (13%)

Query: 27  SRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQE--KMQCEVKDEKDDMKMETDIKRNKK 84
           S ++ +L L DD + K++   A    PKPK   +     C V D  DD            
Sbjct: 320 SEIRHLLTLKDDAVKKELIPKAKSTKPKPKSVSKTSAAACAVTDLSDDSD---------- 369

Query: 85  TLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAKAVKVAK 125
              D+  +   +     R++LK K+E+   + +A   + AK
Sbjct: 370 --FDEKAKLKYYKEIEDRQKLKRKKEENSTEEQALEDQNAK 408


>gi|4885399 structural maintenance of chromosomes 3 [Homo sapiens]
          Length = 1217

 Score = 32.3 bits (72), Expect = 0.11
 Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 5/116 (4%)

Query: 10  KRKMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQEKMQCEVKDE 69
           + K+     K+    E SR     + D    M+D++     +  K    +E+ +    + 
Sbjct: 236 RAKLDELSAKRETSGEKSRQLRDAQQDARDKMEDIERQVRELKTKISAMKEEKEQLSAER 295

Query: 70  KDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAKAVKVAK 125
           ++ +K  T ++   K L D+     +  N  QRKRL  +R+K  EK + K  ++A+
Sbjct: 296 QEQIKQRTKLELKAKDLQDE-----LAGNSEQRKRLLKERQKLLEKIEEKQKELAE 346


>gi|84043963 eukaryotic translation initiation factor 5B [Homo
           sapiens]
          Length = 1220

 Score = 32.3 bits (72), Expect = 0.11
 Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 21/112 (18%)

Query: 8   KWKRKMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQEKMQCEVK 67
           K K+K + EK +K   ++    K+ +K   + L K  +E             E+ Q   +
Sbjct: 316 KDKKKKKGEKEEKEKEKKKGPSKATVKAMQEALAKLKEE-------------EERQKREE 362

Query: 68  DEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAK 119
           +E+     E + KR ++  L+Q         +R+RK+ K K  K + K + K
Sbjct: 363 EERIKRLEELEAKRKEEERLEQ--------EKRERKKQKEKERKERLKKEGK 406


>gi|5729913 mannosidase, alpha, class 1A, member 2 [Homo sapiens]
          Length = 641

 Score = 32.0 bits (71), Expect = 0.14
 Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 20/101 (19%)

Query: 24  EEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQEKMQCEVKDEKDDMKMETDIKRNK 83
           EE  RL++ ++ D +  +++ +E       K +  +E+++ E++ EK+ +  E  IK NK
Sbjct: 102 EEEERLRNKIRADHEKALEEAKE-------KLRKSREEIRAEIQTEKNKVVQEMKIKENK 154

Query: 84  -------KTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNK 117
                    L+   G  P      +   ++ KREK KE  K
Sbjct: 155 PLPPVPIPNLVGIRGGDP------EDNDIREKREKIKEMMK 189


>gi|239745153 PREDICTED: similar to Putative golgin subfamily A
           member 6-like protein 6 [Homo sapiens]
          Length = 655

 Score = 31.6 bits (70), Expect = 0.18
 Identities = 27/126 (21%), Positives = 66/126 (52%), Gaps = 6/126 (4%)

Query: 3   KSLWSKWKRKMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQEKM 62
           + +W + K+    +++ +   EE+ R +  ++ + + +M+D +E    V  K +  +EKM
Sbjct: 406 EKMWRQEKKMREQDEKIREQEEEMWRQEEKIR-ELEEMMQDQEEKLREVEEKMQEEEEKM 464

Query: 63  Q-CEVKDEKDDMKMETDIKR--NKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAK 119
           Q  E K ++ + K++   ++   ++ LL Q  +  IW  + +  R + K  +++EK + +
Sbjct: 465 QEQEEKIQRQEEKIQEQEEKTWRQEKLLKQ--EEKIWEQEEKMWRQEEKMWEQEEKMQEQ 522

Query: 120 AVKVAK 125
             K+ +
Sbjct: 523 EEKMQR 528


>gi|239745127 PREDICTED: similar to Putative golgin subfamily A
           member 6-like protein 6 [Homo sapiens]
          Length = 655

 Score = 31.6 bits (70), Expect = 0.18
 Identities = 27/126 (21%), Positives = 66/126 (52%), Gaps = 6/126 (4%)

Query: 3   KSLWSKWKRKMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQEKM 62
           + +W + K+    +++ +   EE+ R +  ++ + + +M+D +E    V  K +  +EKM
Sbjct: 406 EKMWRQEKKMREQDEKIREQEEEMWRQEEKIR-ELEEMMQDQEEKLREVEEKMQEEEEKM 464

Query: 63  Q-CEVKDEKDDMKMETDIKR--NKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAK 119
           Q  E K ++ + K++   ++   ++ LL Q  +  IW  + +  R + K  +++EK + +
Sbjct: 465 QEQEEKIQRQEEKIQEQEEKTWRQEKLLKQ--EEKIWEQEEKMWRQEEKMWEQEEKMQEQ 522

Query: 120 AVKVAK 125
             K+ +
Sbjct: 523 EEKMQR 528


>gi|41406064 myosin, heavy polypeptide 10, non-muscle [Homo sapiens]
          Length = 1976

 Score = 31.6 bits (70), Expect = 0.18
 Identities = 26/101 (25%), Positives = 50/101 (49%), Gaps = 9/101 (8%)

Query: 14   RAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQEKMQCEVKDEKDDM 73
            +AEK+K++  EE+  LK+ L+   D      QE+ T    +    ++ ++ E K+ +  +
Sbjct: 1136 KAEKQKRDLSEELEALKTELEDTLDTTAAQ-QELRTKREQEVAELKKALEEETKNHEAQI 1194

Query: 74   KMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKE 114
            +   D+++   T L++  +        Q KR KA  EK K+
Sbjct: 1195 Q---DMRQRHATALEELSE-----QLEQAKRFKANLEKNKQ 1227


>gi|41152076 steroid-sensitive protein 1 [Homo sapiens]
          Length = 950

 Score = 31.6 bits (70), Expect = 0.18
 Identities = 22/98 (22%), Positives = 48/98 (48%), Gaps = 9/98 (9%)

Query: 34  KLDDDVLMKDVQEIATVVVPKPKHCQEKMQC------EVKDEKDDMKMETDIKRNKKTLL 87
           K  D +L  + +E   +  P     ++++Q       + K+ K   K+E   K  KK + 
Sbjct: 496 KAQDKILSNEYEEKYDLSRPTASQLEDELQVGNVPLKKAKESKKHEKLEKPEKEKKKKMK 555

Query: 88  DQHGQYPIWMNQRQRKRLKAKREKRKEKNKAKAVKVAK 125
           +++    +  +++Q K  K++++ ++EK K+K  K  K
Sbjct: 556 NENAD-KLLKSEKQMK--KSEKKSKQEKEKSKKKKGGK 590


>gi|41152074 steroid-sensitive protein 1 [Homo sapiens]
          Length = 950

 Score = 31.6 bits (70), Expect = 0.18
 Identities = 22/98 (22%), Positives = 48/98 (48%), Gaps = 9/98 (9%)

Query: 34  KLDDDVLMKDVQEIATVVVPKPKHCQEKMQC------EVKDEKDDMKMETDIKRNKKTLL 87
           K  D +L  + +E   +  P     ++++Q       + K+ K   K+E   K  KK + 
Sbjct: 496 KAQDKILSNEYEEKYDLSRPTASQLEDELQVGNVPLKKAKESKKHEKLEKPEKEKKKKMK 555

Query: 88  DQHGQYPIWMNQRQRKRLKAKREKRKEKNKAKAVKVAK 125
           +++    +  +++Q K  K++++ ++EK K+K  K  K
Sbjct: 556 NENAD-KLLKSEKQMK--KSEKKSKQEKEKSKKKKGGK 590


>gi|42560244 peptidylprolyl isomerase G [Homo sapiens]
          Length = 754

 Score = 31.6 bits (70), Expect = 0.18
 Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 13/68 (19%)

Query: 53  PKPKHCQEKMQCEVKDEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAK-REK 111
           P  K+ +EK   +VKD K + K E DI+RN     ++  +Y      + +KR K+K R K
Sbjct: 416 PNRKNEKEK---KVKDHKSNSK-ERDIRRNS----EKDDKY----KNKVKKRAKSKSRSK 463

Query: 112 RKEKNKAK 119
            KEK+K+K
Sbjct: 464 SKEKSKSK 471


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.314    0.126    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,743,373
Number of Sequences: 37866
Number of extensions: 193735
Number of successful extensions: 1578
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 164
Number of HSP's that attempted gapping in prelim test: 1273
Number of HSP's gapped (non-prelim): 417
length of query: 129
length of database: 18,247,518
effective HSP length: 90
effective length of query: 39
effective length of database: 14,839,578
effective search space: 578743542
effective search space used: 578743542
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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