BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|88959164 PREDICTED: similar to LLP homolog [Homo sapiens] (129 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|169164505 PREDICTED: similar to LLP homolog [Homo sapiens] 263 2e-71 gi|88959164 PREDICTED: similar to LLP homolog [Homo sapiens] 263 2e-71 gi|88953955 PREDICTED: similar to LLP homolog [Homo sapiens] 263 2e-71 gi|14150124 LLP homolog [Homo sapiens] 248 1e-66 gi|147905592 coiled-coil domain containing 102B [Homo sapiens] 38 0.002 gi|148233522 coiled-coil domain containing 102B [Homo sapiens] 38 0.002 gi|151301171 RNA polymerase II transcription factor TAFII140 [Ho... 38 0.003 gi|13129094 ashwin [Homo sapiens] 36 0.007 gi|224593756 hypothetical protein LOC164127 [Homo sapiens] 34 0.028 gi|21450705 leucine rich repeat containing 45 [Homo sapiens] 34 0.028 gi|33620716 retinoblastoma-binding protein 6 isoform 2 [Homo sap... 34 0.037 gi|33620769 retinoblastoma-binding protein 6 isoform 1 [Homo sap... 34 0.037 gi|239754909 PREDICTED: hypothetical protein [Homo sapiens] 33 0.048 gi|239749449 PREDICTED: hypothetical protein [Homo sapiens] 33 0.048 gi|30089940 Golgi autoantigen, golgin subfamily a, 3 [Homo sapiens] 33 0.048 gi|218083720 coiled-coil domain containing 121 isoform 2 [Homo s... 33 0.062 gi|218083716 coiled-coil domain containing 121 isoform 1 [Homo s... 33 0.062 gi|39979626 coiled-coil domain containing 121 isoform 3 [Homo sa... 33 0.062 gi|46519147 ankyrin repeat and KH domain containing 1 isoform 1 ... 33 0.062 gi|37620163 ANKHD1-EIF4EBP3 protein [Homo sapiens] 33 0.062 gi|9966799 UTP3, small subunit processome component [Homo sapiens] 33 0.081 gi|4885399 structural maintenance of chromosomes 3 [Homo sapiens] 32 0.11 gi|84043963 eukaryotic translation initiation factor 5B [Homo sa... 32 0.11 gi|5729913 mannosidase, alpha, class 1A, member 2 [Homo sapiens] 32 0.14 gi|239745153 PREDICTED: similar to Putative golgin subfamily A m... 32 0.18 gi|239745127 PREDICTED: similar to Putative golgin subfamily A m... 32 0.18 gi|41406064 myosin, heavy polypeptide 10, non-muscle [Homo sapiens] 32 0.18 gi|41152076 steroid-sensitive protein 1 [Homo sapiens] 32 0.18 gi|41152074 steroid-sensitive protein 1 [Homo sapiens] 32 0.18 gi|42560244 peptidylprolyl isomerase G [Homo sapiens] 32 0.18 >gi|169164505 PREDICTED: similar to LLP homolog [Homo sapiens] Length = 129 Score = 263 bits (673), Expect = 2e-71 Identities = 129/129 (100%), Positives = 129/129 (100%) Query: 1 MAKSLWSKWKRKMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQE 60 MAKSLWSKWKRKMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQE Sbjct: 1 MAKSLWSKWKRKMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQE 60 Query: 61 KMQCEVKDEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAKA 120 KMQCEVKDEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAKA Sbjct: 61 KMQCEVKDEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAKA 120 Query: 121 VKVAKGLAW 129 VKVAKGLAW Sbjct: 121 VKVAKGLAW 129 >gi|88959164 PREDICTED: similar to LLP homolog [Homo sapiens] Length = 129 Score = 263 bits (673), Expect = 2e-71 Identities = 129/129 (100%), Positives = 129/129 (100%) Query: 1 MAKSLWSKWKRKMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQE 60 MAKSLWSKWKRKMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQE Sbjct: 1 MAKSLWSKWKRKMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQE 60 Query: 61 KMQCEVKDEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAKA 120 KMQCEVKDEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAKA Sbjct: 61 KMQCEVKDEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAKA 120 Query: 121 VKVAKGLAW 129 VKVAKGLAW Sbjct: 121 VKVAKGLAW 129 >gi|88953955 PREDICTED: similar to LLP homolog [Homo sapiens] Length = 129 Score = 263 bits (673), Expect = 2e-71 Identities = 129/129 (100%), Positives = 129/129 (100%) Query: 1 MAKSLWSKWKRKMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQE 60 MAKSLWSKWKRKMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQE Sbjct: 1 MAKSLWSKWKRKMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQE 60 Query: 61 KMQCEVKDEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAKA 120 KMQCEVKDEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAKA Sbjct: 61 KMQCEVKDEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAKA 120 Query: 121 VKVAKGLAW 129 VKVAKGLAW Sbjct: 121 VKVAKGLAW 129 >gi|14150124 LLP homolog [Homo sapiens] Length = 129 Score = 248 bits (632), Expect = 1e-66 Identities = 123/129 (95%), Positives = 125/129 (96%) Query: 1 MAKSLWSKWKRKMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQE 60 MAKSL SKWKRKMRAEKRKKNAP+E SRLKSILKLD DVLMKDVQEIATVVVPKPKHCQE Sbjct: 1 MAKSLRSKWKRKMRAEKRKKNAPKEASRLKSILKLDGDVLMKDVQEIATVVVPKPKHCQE 60 Query: 61 KMQCEVKDEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAKA 120 KMQCEVKDEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRK K+KAKA Sbjct: 61 KMQCEVKDEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKGKSKAKA 120 Query: 121 VKVAKGLAW 129 VKVAKGLAW Sbjct: 121 VKVAKGLAW 129 >gi|147905592 coiled-coil domain containing 102B [Homo sapiens] Length = 513 Score = 38.1 bits (87), Expect = 0.002 Identities = 30/121 (24%), Positives = 64/121 (52%), Gaps = 11/121 (9%) Query: 2 AKSLWSKWKRKMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPK--HCQ 59 A SLW KWK E+ K++ P+ V +L +D ++QE++ + + K + + Sbjct: 291 ALSLW-KWKY----EELKESKPKNVKEFDILLGQHND----EMQELSGNIKEESKSQNSK 341 Query: 60 EKMQCEVKDEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAK 119 +++ CE++ E + ++ E + +K+ +L++ Q N+R + ++K E +KN+ Sbjct: 342 DRVICELRAELERLQAENTSEWDKREILEREKQGLERENRRLKIQVKEMEELLDKKNRLS 401 Query: 120 A 120 A Sbjct: 402 A 402 Score = 26.9 bits (58), Expect = 4.5 Identities = 24/119 (20%), Positives = 50/119 (42%), Gaps = 20/119 (16%) Query: 7 SKWKRKMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQEKMQCEV 66 S+W ++ E+ K+ E RLK + +K+++E+ +K + Sbjct: 361 SEWDKREILEREKQGLERENRRLK--------IQVKEMEEL----------LDKKNRLSA 402 Query: 67 KDEKDDMKM-ETDIKRNKKTLLD-QHGQYPIWMNQRQRKRLKAKREKRKEKNKAKAVKV 123 + D KM + D++ + LL+ QH Y + + R ++N+A+ K+ Sbjct: 403 NSQSPDFKMSQIDLQEKNQELLNLQHAYYKLNRQYQANIAELTHANNRVDQNEAEVKKL 461 >gi|148233522 coiled-coil domain containing 102B [Homo sapiens] Length = 513 Score = 38.1 bits (87), Expect = 0.002 Identities = 30/121 (24%), Positives = 64/121 (52%), Gaps = 11/121 (9%) Query: 2 AKSLWSKWKRKMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPK--HCQ 59 A SLW KWK E+ K++ P+ V +L +D ++QE++ + + K + + Sbjct: 291 ALSLW-KWKY----EELKESKPKNVKEFDILLGQHND----EMQELSGNIKEESKSQNSK 341 Query: 60 EKMQCEVKDEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAK 119 +++ CE++ E + ++ E + +K+ +L++ Q N+R + ++K E +KN+ Sbjct: 342 DRVICELRAELERLQAENTSEWDKREILEREKQGLERENRRLKIQVKEMEELLDKKNRLS 401 Query: 120 A 120 A Sbjct: 402 A 402 Score = 26.9 bits (58), Expect = 4.5 Identities = 24/119 (20%), Positives = 50/119 (42%), Gaps = 20/119 (16%) Query: 7 SKWKRKMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQEKMQCEV 66 S+W ++ E+ K+ E RLK + +K+++E+ +K + Sbjct: 361 SEWDKREILEREKQGLERENRRLK--------IQVKEMEEL----------LDKKNRLSA 402 Query: 67 KDEKDDMKM-ETDIKRNKKTLLD-QHGQYPIWMNQRQRKRLKAKREKRKEKNKAKAVKV 123 + D KM + D++ + LL+ QH Y + + R ++N+A+ K+ Sbjct: 403 NSQSPDFKMSQIDLQEKNQELLNLQHAYYKLNRQYQANIAELTHANNRVDQNEAEVKKL 461 >gi|151301171 RNA polymerase II transcription factor TAFII140 [Homo sapiens] Length = 929 Score = 37.7 bits (86), Expect = 0.003 Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 11/119 (9%) Query: 8 KWKRKMRAEKRKKNAPEEVSRLKSI-LKLDDDVLMKDVQEIATVVVP--KPKHCQEKMQC 64 K K K R +K K AP V K + L L V + ++P K +EK + Sbjct: 637 KVKDKGREDKMKAPAPPLVLPPKELALPLFSPATASRVPAMLPSLLPVLPEKLFEEKEKV 696 Query: 65 EVKDEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAKAVKV 123 + K++K D K + K +K ++ + + KR + KREK KEK+K + +KV Sbjct: 697 KEKEKKKDKKEKKKKKEKEKEKKEKE--------REKEKREREKREKEKEKHKHEKIKV 747 Score = 25.8 bits (55), Expect = 9.9 Identities = 30/130 (23%), Positives = 62/130 (47%), Gaps = 14/130 (10%) Query: 3 KSLWSKWKRKMRAEKRKKNAPEEVSRLKSILKLDDDVLMK--DVQEIATVVVPKPKHCQE 60 K L + K KM+ ++++++ E + K K D V K D + P + +E Sbjct: 523 KKLKKELKTKMKKKEKQRDREREKDKNKDKSKEKDKVKEKEKDKETGRETKYPWKEFLKE 582 Query: 61 K----MQCEVKDEKD---DMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRK 113 + + ++K+ +D +K++ + R +K ++H ++ + K+ K KREK K Sbjct: 583 EEADPYKFKIKEFEDVDPKVKLKDGLVRKEK---EKHKDKK--KDREKGKKDKDKREKEK 637 Query: 114 EKNKAKAVKV 123 K+K + K+ Sbjct: 638 VKDKGREDKM 647 >gi|13129094 ashwin [Homo sapiens] Length = 232 Score = 36.2 bits (82), Expect = 0.007 Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 6/65 (9%) Query: 69 EKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQ------RKRLKAKREKRKEKNKAKAVK 122 E+ ++ +ETD++ NK +L D + Q+ I + QR K ++ KRE+ + KN+ K Sbjct: 32 EQKNIAVETDVRVNKDSLTDLYVQHAIPLPQRDLPKNRWGKMMEKKREQHEIKNETKRSS 91 Query: 123 VAKGL 127 GL Sbjct: 92 TVDGL 96 >gi|224593756 hypothetical protein LOC164127 [Homo sapiens] Length = 623 Score = 34.3 bits (77), Expect = 0.028 Identities = 28/116 (24%), Positives = 58/116 (50%), Gaps = 13/116 (11%) Query: 3 KSLWSKWKRKMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQEKM 62 +SL S+ + + + K ++ +V LKS KL++ V+ Q+I +V+ + K Q Sbjct: 219 ESLASRDSQPLASSKEMRSPHTQV--LKS--KLEEVVVSSQDQQIVALVLTRLKKAQRIR 274 Query: 63 QCEVKDEK-------DDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREK 111 + + + K D K++ ++R ++ LL Q + W + QRK L++ ++ Sbjct: 275 ELQQQAAKAWEELKRSDQKVQMTLERERRLLLRQSQEQ--WQEKEQRKTLQSPEQR 328 >gi|21450705 leucine rich repeat containing 45 [Homo sapiens] Length = 670 Score = 34.3 bits (77), Expect = 0.028 Identities = 26/109 (23%), Positives = 52/109 (47%), Gaps = 10/109 (9%) Query: 12 KMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQEKMQCEVKDEKD 71 KMRA + ++ E R + L+ + + +K+V+ + + K QE++Q + E Sbjct: 405 KMRAIQAEERLDMEKRRCRQSLEDSESLRIKEVEHMTRHLEESEKAMQERVQ---RLEAA 461 Query: 72 DMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAKA 120 + +E ++ R K L + G Q + + +KAK + R E+ + A Sbjct: 462 RLSLEEELSRVKAAALSERG-------QAEEELIKAKSQARLEEQQRLA 503 >gi|33620716 retinoblastoma-binding protein 6 isoform 2 [Homo sapiens] Length = 1758 Score = 33.9 bits (76), Expect = 0.037 Identities = 31/113 (27%), Positives = 46/113 (40%), Gaps = 7/113 (6%) Query: 10 KRKMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQEKMQCE-VKD 68 +R R+E K A EE + + KD + T K +E + + VK+ Sbjct: 1016 ERSPRSEPPIKKAKEETPKTDNTKSSSSS--QKDEKITGTPRKAHSKSAKEHQETKPVKE 1073 Query: 69 EKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAKAV 121 EK D+K K T ++ + P + K L K EKRK K + K V Sbjct: 1074 EKVKKDYSKDVKSEKLTTKEEKAKKP----NEKNKPLDNKGEKRKRKTEEKGV 1122 Score = 27.3 bits (59), Expect = 3.4 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 60 EKMQCEVKDEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQR-KRLKAKREKRKEKNKA 118 E + K +K + K K++KK + + +Q+ + K+ K+K+ K KEK K Sbjct: 1688 ESQDSKKKKKKKEKKKHKKHKKHKKHKKHAGTEVELEKSQKHKHKKKKSKKNKDKEKEKE 1747 Query: 119 K 119 K Sbjct: 1748 K 1748 >gi|33620769 retinoblastoma-binding protein 6 isoform 1 [Homo sapiens] Length = 1792 Score = 33.9 bits (76), Expect = 0.037 Identities = 31/113 (27%), Positives = 46/113 (40%), Gaps = 7/113 (6%) Query: 10 KRKMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQEKMQCE-VKD 68 +R R+E K A EE + + KD + T K +E + + VK+ Sbjct: 1050 ERSPRSEPPIKKAKEETPKTDNTKSSSSS--QKDEKITGTPRKAHSKSAKEHQETKPVKE 1107 Query: 69 EKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAKAV 121 EK D+K K T ++ + P + K L K EKRK K + K V Sbjct: 1108 EKVKKDYSKDVKSEKLTTKEEKAKKP----NEKNKPLDNKGEKRKRKTEEKGV 1156 Score = 27.3 bits (59), Expect = 3.4 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 60 EKMQCEVKDEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQR-KRLKAKREKRKEKNKA 118 E + K +K + K K++KK + + +Q+ + K+ K+K+ K KEK K Sbjct: 1722 ESQDSKKKKKKKEKKKHKKHKKHKKHKKHAGTEVELEKSQKHKHKKKKSKKNKDKEKEKE 1781 Query: 119 K 119 K Sbjct: 1782 K 1782 >gi|239754909 PREDICTED: hypothetical protein [Homo sapiens] Length = 245 Score = 33.5 bits (75), Expect = 0.048 Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 14/117 (11%) Query: 10 KRKMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQEKMQCEVKDE 69 ++K R EK K E+ R K K + T K + +E+ + E + E Sbjct: 97 RKKRRREKENKEGEEKEKRKKKEKK----------ERGRTSKEGKERERKEERKREERKE 146 Query: 70 ----KDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAKAVK 122 K++ + E + K KK Q G+ +++RK K + RKE+ K + K Sbjct: 147 RERKKEEREKERERKERKKRERKQVGEKEEERKEKERKERKKRERNRKERKKERERK 203 Score = 28.5 bits (62), Expect = 1.5 Identities = 19/87 (21%), Positives = 43/87 (49%), Gaps = 11/87 (12%) Query: 40 LMKDVQEIATVVVPKPKHCQEKMQCEVKDEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQ 99 L ++Q ++ + KP Q Q E+++ + +++ + K+ +++ + Sbjct: 13 LNTELQMVSCSHISKPC-TQPGWQSEIREREREIETRKEGKKERESE----------RKK 61 Query: 100 RQRKRLKAKREKRKEKNKAKAVKVAKG 126 +R+R K KRE+ KE+ + + K KG Sbjct: 62 ERREREKRKREREKERKRERGKKEKKG 88 Score = 26.6 bits (57), Expect = 5.8 Identities = 24/108 (22%), Positives = 51/108 (47%), Gaps = 15/108 (13%) Query: 10 KRKMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQEKMQCEVKDE 69 K + R E+RK+ +E R K + + + + +E V +++ + + K+ Sbjct: 131 KERERKEERKREERKERERKKEEREKERERKERKKRERKQVG-------EKEEERKEKER 183 Query: 70 KDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNK 117 K+ K E + K KK + +R+RK+ + K+E+RK++ + Sbjct: 184 KERKKRERNRKERKKERERKE--------RRERKKERKKKEERKKERQ 223 >gi|239749449 PREDICTED: hypothetical protein [Homo sapiens] Length = 275 Score = 33.5 bits (75), Expect = 0.048 Identities = 27/112 (24%), Positives = 55/112 (49%), Gaps = 7/112 (6%) Query: 8 KWKRKMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQEKMQCEVK 67 K +RK + EK+K+ + R + K + ++ Q + K ++K + E K Sbjct: 92 KERRKRKKEKKKRERKQRGRRERKKKKERKERERENKQRRER---KRKKRRKKKRRKERK 148 Query: 68 DEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAK 119 EK+ K E K+ KK ++ + N+++RK+ + ++E+R+ K + K Sbjct: 149 REKERGKRERKRKKRKKEEREKKRE----RNRKERKKERERKERRERKKERK 196 Score = 30.4 bits (67), Expect = 0.40 Identities = 28/113 (24%), Positives = 54/113 (47%), Gaps = 9/113 (7%) Query: 10 KRKMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQEKMQCEVKDE 69 KRK R EK++K E+ R + K + + +E K + + K + E K + Sbjct: 78 KRKER-EKQRKERREKERRKRKKEKKKRERKQRGRRERKKKKERKERERENKQRRERKRK 136 Query: 70 KDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAKAVK 122 K K ++ +K + G+ ++++KR K +REK++E+N+ + K Sbjct: 137 KRRKKKRRKERKREK----ERGK----RERKRKKRKKEEREKKRERNRKERKK 181 Score = 27.7 bits (60), Expect = 2.6 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 4/59 (6%) Query: 67 KDEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAKAVKVAK 125 ++ + + K E K KK + G+ +R+RK + +R++R+EK + K K K Sbjct: 48 REREKERKRERGKKEKKKRKKRERGKE----RERKRKEREKQRKERREKERRKRKKEKK 102 Score = 25.8 bits (55), Expect = 9.9 Identities = 25/116 (21%), Positives = 48/116 (41%), Gaps = 5/116 (4%) Query: 10 KRKMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQEKMQCEVKDE 69 K + EKRK+ +E R + + + +E + K +E+ + E + Sbjct: 38 KERREREKRKREREKERKRERGKKEKKKRKKRERGKERERKRKEREKQRKERREKERRKR 97 Query: 70 KDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAKAVKVAK 125 K + K KR +K + + +R+R+ + + KRK++ K K K K Sbjct: 98 KKEKK-----KRERKQRGRRERKKKKERKERERENKQRRERKRKKRRKKKRRKERK 148 >gi|30089940 Golgi autoantigen, golgin subfamily a, 3 [Homo sapiens] Length = 1498 Score = 33.5 bits (75), Expect = 0.048 Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 3/102 (2%) Query: 25 EVSRLKSILKLDDDVLMKDV---QEIATVVVPKPKHCQEKMQCEVKDEKDDMKMETDIKR 81 E+ LK L L + K++ Q++ V + + QE + KD+ +++K Sbjct: 1299 EIQSLKQQLDLTEQQGRKELEGLQQLLQNVKSELEMAQEDLSMTQKDKFMLQAKVSELKN 1358 Query: 82 NKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAKAVKV 123 N KTLL Q+ Q + + + K K + + N A +K+ Sbjct: 1359 NMKTLLQQNQQLKLDLRRGAAKTRKEPKGEASSSNPATPIKI 1400 >gi|218083720 coiled-coil domain containing 121 isoform 2 [Homo sapiens] Length = 440 Score = 33.1 bits (74), Expect = 0.062 Identities = 33/131 (25%), Positives = 67/131 (51%), Gaps = 11/131 (8%) Query: 3 KSLWSKWKRKM-RAEKRKKNAP----EEVSRLKSILKLDDDV---LMKDVQEIATVVVPK 54 + +W+ + +K E+R++ + E++S LK+ L +++ L + +Q + + + K Sbjct: 217 EKVWNSYLQKSGEIERRRQESASRYAEQISVLKTALLQKENIQSSLKRKLQAMRDIAILK 276 Query: 55 PKHCQEKMQCEVKDEKDDMKMETDIK-RNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRK 113 K QEK +++E ++ ET K R + L Q + +RL KR++R+ Sbjct: 277 EK--QEKEIQTLQEETKKVQAETASKTREVQAQLLQEKRLLEKQLSEPDRRLLGKRKRRE 334 Query: 114 EKNKAKAVKVA 124 KA+A+K+A Sbjct: 335 LNMKAQALKLA 345 >gi|218083716 coiled-coil domain containing 121 isoform 1 [Homo sapiens] Length = 442 Score = 33.1 bits (74), Expect = 0.062 Identities = 33/131 (25%), Positives = 67/131 (51%), Gaps = 11/131 (8%) Query: 3 KSLWSKWKRKM-RAEKRKKNAP----EEVSRLKSILKLDDDV---LMKDVQEIATVVVPK 54 + +W+ + +K E+R++ + E++S LK+ L +++ L + +Q + + + K Sbjct: 219 EKVWNSYLQKSGEIERRRQESASRYAEQISVLKTALLQKENIQSSLKRKLQAMRDIAILK 278 Query: 55 PKHCQEKMQCEVKDEKDDMKMETDIK-RNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRK 113 K QEK +++E ++ ET K R + L Q + +RL KR++R+ Sbjct: 279 EK--QEKEIQTLQEETKKVQAETASKTREVQAQLLQEKRLLEKQLSEPDRRLLGKRKRRE 336 Query: 114 EKNKAKAVKVA 124 KA+A+K+A Sbjct: 337 LNMKAQALKLA 347 >gi|39979626 coiled-coil domain containing 121 isoform 3 [Homo sapiens] Length = 278 Score = 33.1 bits (74), Expect = 0.062 Identities = 33/131 (25%), Positives = 67/131 (51%), Gaps = 11/131 (8%) Query: 3 KSLWSKWKRKM-RAEKRKKNAP----EEVSRLKSILKLDDDV---LMKDVQEIATVVVPK 54 + +W+ + +K E+R++ + E++S LK+ L +++ L + +Q + + + K Sbjct: 55 EKVWNSYLQKSGEIERRRQESASRYAEQISVLKTALLQKENIQSSLKRKLQAMRDIAILK 114 Query: 55 PKHCQEKMQCEVKDEKDDMKMETDIK-RNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRK 113 K QEK +++E ++ ET K R + L Q + +RL KR++R+ Sbjct: 115 EK--QEKEIQTLQEETKKVQAETASKTREVQAQLLQEKRLLEKQLSEPDRRLLGKRKRRE 172 Query: 114 EKNKAKAVKVA 124 KA+A+K+A Sbjct: 173 LNMKAQALKLA 183 >gi|46519147 ankyrin repeat and KH domain containing 1 isoform 1 [Homo sapiens] Length = 2542 Score = 33.1 bits (74), Expect = 0.062 Identities = 22/103 (21%), Positives = 44/103 (42%), Gaps = 18/103 (17%) Query: 17 KRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQEKMQCEVKDEKDDMKME 76 K P ++ ++ I + D L+K + +V +++ E + E Sbjct: 1379 KEVNQFPSDIECMRYIATITDKELLKKCHQCVETIVK----AKDQQAAEANKNASILLKE 1434 Query: 77 TDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAK 119 D++++++ + +++ L AKREKRKEK K K Sbjct: 1435 LDLEKSRE--------------ESRKQALAAKREKRKEKRKKK 1463 Score = 27.3 bits (59), Expect = 3.4 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 8/64 (12%) Query: 12 KMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQEKMQCEVKDEKD 71 K + E+ KKN E+V + K IL K++Q++ + K + K E K +KD Sbjct: 814 KDKIEELKKNREEQVQKKKKIL--------KELQKVERQLQMKTQQQFTKEYLETKGQKD 865 Query: 72 DMKM 75 + + Sbjct: 866 TVSL 869 >gi|37620163 ANKHD1-EIF4EBP3 protein [Homo sapiens] Length = 2617 Score = 33.1 bits (74), Expect = 0.062 Identities = 22/103 (21%), Positives = 44/103 (42%), Gaps = 18/103 (17%) Query: 17 KRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQEKMQCEVKDEKDDMKME 76 K P ++ ++ I + D L+K + +V +++ E + E Sbjct: 1379 KEVNQFPSDIECMRYIATITDKELLKKCHQCVETIVK----AKDQQAAEANKNASILLKE 1434 Query: 77 TDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAK 119 D++++++ + +++ L AKREKRKEK K K Sbjct: 1435 LDLEKSRE--------------ESRKQALAAKREKRKEKRKKK 1463 Score = 27.3 bits (59), Expect = 3.4 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 8/64 (12%) Query: 12 KMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQEKMQCEVKDEKD 71 K + E+ KKN E+V + K IL K++Q++ + K + K E K +KD Sbjct: 814 KDKIEELKKNREEQVQKKKKIL--------KELQKVERQLQMKTQQQFTKEYLETKGQKD 865 Query: 72 DMKM 75 + + Sbjct: 866 TVSL 869 >gi|9966799 UTP3, small subunit processome component [Homo sapiens] Length = 479 Score = 32.7 bits (73), Expect = 0.081 Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 14/101 (13%) Query: 27 SRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQE--KMQCEVKDEKDDMKMETDIKRNKK 84 S ++ +L L DD + K++ A PKPK + C V D DD Sbjct: 320 SEIRHLLTLKDDAVKKELIPKAKSTKPKPKSVSKTSAAACAVTDLSDDSD---------- 369 Query: 85 TLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAKAVKVAK 125 D+ + + R++LK K+E+ + +A + AK Sbjct: 370 --FDEKAKLKYYKEIEDRQKLKRKKEENSTEEQALEDQNAK 408 >gi|4885399 structural maintenance of chromosomes 3 [Homo sapiens] Length = 1217 Score = 32.3 bits (72), Expect = 0.11 Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 5/116 (4%) Query: 10 KRKMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQEKMQCEVKDE 69 + K+ K+ E SR + D M+D++ + K +E+ + + Sbjct: 236 RAKLDELSAKRETSGEKSRQLRDAQQDARDKMEDIERQVRELKTKISAMKEEKEQLSAER 295 Query: 70 KDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAKAVKVAK 125 ++ +K T ++ K L D+ + N QRKRL +R+K EK + K ++A+ Sbjct: 296 QEQIKQRTKLELKAKDLQDE-----LAGNSEQRKRLLKERQKLLEKIEEKQKELAE 346 >gi|84043963 eukaryotic translation initiation factor 5B [Homo sapiens] Length = 1220 Score = 32.3 bits (72), Expect = 0.11 Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 21/112 (18%) Query: 8 KWKRKMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQEKMQCEVK 67 K K+K + EK +K ++ K+ +K + L K +E E+ Q + Sbjct: 316 KDKKKKKGEKEEKEKEKKKGPSKATVKAMQEALAKLKEE-------------EERQKREE 362 Query: 68 DEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAK 119 +E+ E + KR ++ L+Q +R+RK+ K K K + K + K Sbjct: 363 EERIKRLEELEAKRKEEERLEQ--------EKRERKKQKEKERKERLKKEGK 406 >gi|5729913 mannosidase, alpha, class 1A, member 2 [Homo sapiens] Length = 641 Score = 32.0 bits (71), Expect = 0.14 Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 20/101 (19%) Query: 24 EEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQEKMQCEVKDEKDDMKMETDIKRNK 83 EE RL++ ++ D + +++ +E K + +E+++ E++ EK+ + E IK NK Sbjct: 102 EEEERLRNKIRADHEKALEEAKE-------KLRKSREEIRAEIQTEKNKVVQEMKIKENK 154 Query: 84 -------KTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNK 117 L+ G P + ++ KREK KE K Sbjct: 155 PLPPVPIPNLVGIRGGDP------EDNDIREKREKIKEMMK 189 >gi|239745153 PREDICTED: similar to Putative golgin subfamily A member 6-like protein 6 [Homo sapiens] Length = 655 Score = 31.6 bits (70), Expect = 0.18 Identities = 27/126 (21%), Positives = 66/126 (52%), Gaps = 6/126 (4%) Query: 3 KSLWSKWKRKMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQEKM 62 + +W + K+ +++ + EE+ R + ++ + + +M+D +E V K + +EKM Sbjct: 406 EKMWRQEKKMREQDEKIREQEEEMWRQEEKIR-ELEEMMQDQEEKLREVEEKMQEEEEKM 464 Query: 63 Q-CEVKDEKDDMKMETDIKR--NKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAK 119 Q E K ++ + K++ ++ ++ LL Q + IW + + R + K +++EK + + Sbjct: 465 QEQEEKIQRQEEKIQEQEEKTWRQEKLLKQ--EEKIWEQEEKMWRQEEKMWEQEEKMQEQ 522 Query: 120 AVKVAK 125 K+ + Sbjct: 523 EEKMQR 528 >gi|239745127 PREDICTED: similar to Putative golgin subfamily A member 6-like protein 6 [Homo sapiens] Length = 655 Score = 31.6 bits (70), Expect = 0.18 Identities = 27/126 (21%), Positives = 66/126 (52%), Gaps = 6/126 (4%) Query: 3 KSLWSKWKRKMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQEKM 62 + +W + K+ +++ + EE+ R + ++ + + +M+D +E V K + +EKM Sbjct: 406 EKMWRQEKKMREQDEKIREQEEEMWRQEEKIR-ELEEMMQDQEEKLREVEEKMQEEEEKM 464 Query: 63 Q-CEVKDEKDDMKMETDIKR--NKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAK 119 Q E K ++ + K++ ++ ++ LL Q + IW + + R + K +++EK + + Sbjct: 465 QEQEEKIQRQEEKIQEQEEKTWRQEKLLKQ--EEKIWEQEEKMWRQEEKMWEQEEKMQEQ 522 Query: 120 AVKVAK 125 K+ + Sbjct: 523 EEKMQR 528 >gi|41406064 myosin, heavy polypeptide 10, non-muscle [Homo sapiens] Length = 1976 Score = 31.6 bits (70), Expect = 0.18 Identities = 26/101 (25%), Positives = 50/101 (49%), Gaps = 9/101 (8%) Query: 14 RAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQEKMQCEVKDEKDDM 73 +AEK+K++ EE+ LK+ L+ D QE+ T + ++ ++ E K+ + + Sbjct: 1136 KAEKQKRDLSEELEALKTELEDTLDTTAAQ-QELRTKREQEVAELKKALEEETKNHEAQI 1194 Query: 74 KMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKE 114 + D+++ T L++ + Q KR KA EK K+ Sbjct: 1195 Q---DMRQRHATALEELSE-----QLEQAKRFKANLEKNKQ 1227 >gi|41152076 steroid-sensitive protein 1 [Homo sapiens] Length = 950 Score = 31.6 bits (70), Expect = 0.18 Identities = 22/98 (22%), Positives = 48/98 (48%), Gaps = 9/98 (9%) Query: 34 KLDDDVLMKDVQEIATVVVPKPKHCQEKMQC------EVKDEKDDMKMETDIKRNKKTLL 87 K D +L + +E + P ++++Q + K+ K K+E K KK + Sbjct: 496 KAQDKILSNEYEEKYDLSRPTASQLEDELQVGNVPLKKAKESKKHEKLEKPEKEKKKKMK 555 Query: 88 DQHGQYPIWMNQRQRKRLKAKREKRKEKNKAKAVKVAK 125 +++ + +++Q K K++++ ++EK K+K K K Sbjct: 556 NENAD-KLLKSEKQMK--KSEKKSKQEKEKSKKKKGGK 590 >gi|41152074 steroid-sensitive protein 1 [Homo sapiens] Length = 950 Score = 31.6 bits (70), Expect = 0.18 Identities = 22/98 (22%), Positives = 48/98 (48%), Gaps = 9/98 (9%) Query: 34 KLDDDVLMKDVQEIATVVVPKPKHCQEKMQC------EVKDEKDDMKMETDIKRNKKTLL 87 K D +L + +E + P ++++Q + K+ K K+E K KK + Sbjct: 496 KAQDKILSNEYEEKYDLSRPTASQLEDELQVGNVPLKKAKESKKHEKLEKPEKEKKKKMK 555 Query: 88 DQHGQYPIWMNQRQRKRLKAKREKRKEKNKAKAVKVAK 125 +++ + +++Q K K++++ ++EK K+K K K Sbjct: 556 NENAD-KLLKSEKQMK--KSEKKSKQEKEKSKKKKGGK 590 >gi|42560244 peptidylprolyl isomerase G [Homo sapiens] Length = 754 Score = 31.6 bits (70), Expect = 0.18 Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 13/68 (19%) Query: 53 PKPKHCQEKMQCEVKDEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAK-REK 111 P K+ +EK +VKD K + K E DI+RN ++ +Y + +KR K+K R K Sbjct: 416 PNRKNEKEK---KVKDHKSNSK-ERDIRRNS----EKDDKY----KNKVKKRAKSKSRSK 463 Query: 112 RKEKNKAK 119 KEK+K+K Sbjct: 464 SKEKSKSK 471 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.314 0.126 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,743,373 Number of Sequences: 37866 Number of extensions: 193735 Number of successful extensions: 1578 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 86 Number of HSP's successfully gapped in prelim test: 164 Number of HSP's that attempted gapping in prelim test: 1273 Number of HSP's gapped (non-prelim): 417 length of query: 129 length of database: 18,247,518 effective HSP length: 90 effective length of query: 39 effective length of database: 14,839,578 effective search space: 578743542 effective search space used: 578743542 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.