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Search of human proteins with 88957138
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|88957138 PREDICTED: hypothetical protein [Homo sapiens]
(125 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169163739 PREDICTED: hypothetical protein [Homo sapiens] 257 2e-69
gi|88957138 PREDICTED: hypothetical protein [Homo sapiens] 257 2e-69
gi|88953651 PREDICTED: hypothetical protein [Homo sapiens] 257 2e-69
gi|38488727 arginine/serine-rich coiled-coil 1 [Homo sapiens] 33 0.043
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 33 0.073
gi|239743781 PREDICTED: hypothetical protein XP_002344297 [Homo ... 32 0.095
gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens] 32 0.095
gi|37574618 hemogen [Homo sapiens] 32 0.12
gi|37574622 hemogen [Homo sapiens] 32 0.12
gi|169210350 PREDICTED: hypothetical protein [Homo sapiens] 31 0.21
gi|113426339 PREDICTED: hypothetical protein [Homo sapiens] 31 0.21
gi|113426005 PREDICTED: hypothetical protein [Homo sapiens] 31 0.21
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 31 0.21
gi|58331242 formin homology 2 domain containing 3 [Homo sapiens] 31 0.28
gi|239756937 PREDICTED: hypothetical protein [Homo sapiens] 31 0.28
gi|239751449 PREDICTED: hypothetical protein XP_002347867 [Homo ... 31 0.28
gi|239750574 PREDICTED: hypothetical protein [Homo sapiens] 31 0.28
gi|239745954 PREDICTED: hypothetical protein XP_002343623 [Homo ... 31 0.28
gi|169205732 PREDICTED: hypothetical protein [Homo sapiens] 31 0.28
gi|239743051 PREDICTED: hypothetical protein XP_002342747 [Homo ... 30 0.36
gi|239508698 PREDICTED: similar to mucin [Homo sapiens] 30 0.36
gi|40353729 Ras and Rab interactor 3 [Homo sapiens] 30 0.36
gi|89276756 serine/threonine-protein kinase PRP4K [Homo sapiens] 30 0.36
gi|169214061 PREDICTED: hypothetical protein [Homo sapiens] 30 0.47
gi|169214437 PREDICTED: hypothetical protein [Homo sapiens] 30 0.47
gi|169213353 PREDICTED: hypothetical protein [Homo sapiens] 30 0.47
gi|239745068 PREDICTED: similar to hCG2042704 [Homo sapiens] 30 0.47
gi|40805108 putative small membrane protein NID67 [Homo sapiens] 30 0.47
gi|7706607 LEM domain containing 3 [Homo sapiens] 30 0.47
gi|4557779 myocilin [Homo sapiens] 30 0.62
>gi|169163739 PREDICTED: hypothetical protein [Homo sapiens]
Length = 125
Score = 257 bits (656), Expect = 2e-69
Identities = 125/125 (100%), Positives = 125/125 (100%)
Query: 1 MLVVGREERKSALRGVSWRHTPSPRPQHSNRTWRLRRRRQSVARSGGGSNRRRSRERRGQ 60
MLVVGREERKSALRGVSWRHTPSPRPQHSNRTWRLRRRRQSVARSGGGSNRRRSRERRGQ
Sbjct: 1 MLVVGREERKSALRGVSWRHTPSPRPQHSNRTWRLRRRRQSVARSGGGSNRRRSRERRGQ 60
Query: 61 NPASLAQGEVAPVGAQRDTQTFQQRPQRQNKIVQGAAHPHSAETLPRTSLAAVFPLAPPP 120
NPASLAQGEVAPVGAQRDTQTFQQRPQRQNKIVQGAAHPHSAETLPRTSLAAVFPLAPPP
Sbjct: 61 NPASLAQGEVAPVGAQRDTQTFQQRPQRQNKIVQGAAHPHSAETLPRTSLAAVFPLAPPP 120
Query: 121 TWNKA 125
TWNKA
Sbjct: 121 TWNKA 125
>gi|88957138 PREDICTED: hypothetical protein [Homo sapiens]
Length = 125
Score = 257 bits (656), Expect = 2e-69
Identities = 125/125 (100%), Positives = 125/125 (100%)
Query: 1 MLVVGREERKSALRGVSWRHTPSPRPQHSNRTWRLRRRRQSVARSGGGSNRRRSRERRGQ 60
MLVVGREERKSALRGVSWRHTPSPRPQHSNRTWRLRRRRQSVARSGGGSNRRRSRERRGQ
Sbjct: 1 MLVVGREERKSALRGVSWRHTPSPRPQHSNRTWRLRRRRQSVARSGGGSNRRRSRERRGQ 60
Query: 61 NPASLAQGEVAPVGAQRDTQTFQQRPQRQNKIVQGAAHPHSAETLPRTSLAAVFPLAPPP 120
NPASLAQGEVAPVGAQRDTQTFQQRPQRQNKIVQGAAHPHSAETLPRTSLAAVFPLAPPP
Sbjct: 61 NPASLAQGEVAPVGAQRDTQTFQQRPQRQNKIVQGAAHPHSAETLPRTSLAAVFPLAPPP 120
Query: 121 TWNKA 125
TWNKA
Sbjct: 121 TWNKA 125
>gi|88953651 PREDICTED: hypothetical protein [Homo sapiens]
Length = 125
Score = 257 bits (656), Expect = 2e-69
Identities = 125/125 (100%), Positives = 125/125 (100%)
Query: 1 MLVVGREERKSALRGVSWRHTPSPRPQHSNRTWRLRRRRQSVARSGGGSNRRRSRERRGQ 60
MLVVGREERKSALRGVSWRHTPSPRPQHSNRTWRLRRRRQSVARSGGGSNRRRSRERRGQ
Sbjct: 1 MLVVGREERKSALRGVSWRHTPSPRPQHSNRTWRLRRRRQSVARSGGGSNRRRSRERRGQ 60
Query: 61 NPASLAQGEVAPVGAQRDTQTFQQRPQRQNKIVQGAAHPHSAETLPRTSLAAVFPLAPPP 120
NPASLAQGEVAPVGAQRDTQTFQQRPQRQNKIVQGAAHPHSAETLPRTSLAAVFPLAPPP
Sbjct: 61 NPASLAQGEVAPVGAQRDTQTFQQRPQRQNKIVQGAAHPHSAETLPRTSLAAVFPLAPPP 120
Query: 121 TWNKA 125
TWNKA
Sbjct: 121 TWNKA 125
>gi|38488727 arginine/serine-rich coiled-coil 1 [Homo sapiens]
Length = 334
Score = 33.5 bits (75), Expect = 0.043
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 9 RKSALRGVSWRHTPSPRPQHSNRTWRLRRRRQSVARSGGGSNRRRSRER-RGQNPASLAQ 67
RKS + SW PR +R RRR +S + S GS R+RSR R RG+ + Q
Sbjct: 42 RKSRSKSRSWSRDLQPRSHSYDR----RRRHRSSSSSSYGSRRKRSRSRSRGRGKSYRVQ 97
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 32.7 bits (73), Expect = 0.073
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 14 RGVSWRHTPSPRPQHSNRTWRLRRRRQSVARSGGGSNRRRSRERRGQNPASLAQGEVAPV 73
RG S H+ SP Q S+RT RRR +S ++R+RSR R P ++ +P
Sbjct: 1815 RGGSGYHSRSPARQESSRTSSRRRRGRSRTPP---TSRKRSRSRTSPAPWKRSRSRASPA 1871
Query: 74 GAQR 77
+R
Sbjct: 1872 THRR 1875
Score = 31.6 bits (70), Expect = 0.16
Identities = 29/98 (29%), Positives = 39/98 (39%), Gaps = 13/98 (13%)
Query: 11 SALRGVSWRHTPSPRPQHSNRTWRLRRRRQSVARSGGGSNRRRSRERRGQNPASLAQGEV 70
+A RG S TP+ R +R+ + RR R + S +RR R R Q P
Sbjct: 489 TAKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGRSRSPQRRGRSRSPQRP-------- 540
Query: 71 APVGAQRDTQTFQQRPQRQNKIVQGAAHPHSAETLPRT 108
G R T QR R +G +H S T R+
Sbjct: 541 ---GWSRSRNT--QRRGRSRSARRGRSHSRSPATRGRS 573
Score = 30.0 bits (66), Expect = 0.47
Identities = 25/84 (29%), Positives = 33/84 (39%), Gaps = 2/84 (2%)
Query: 9 RKSALRGVSWRHTPSPRPQHSNRTWRLRRRRQSVARSGGGSNRRRSRERRGQNPASLAQ- 67
R A RG S TP+ R S RR R G +R RS RRG++ + Q
Sbjct: 661 RTPARRGRSRSRTPARRSGRSRSRTPARRGRSRSRTPRRGRSRSRSLVRRGRSHSRTPQR 720
Query: 68 -GEVAPVGAQRDTQTFQQRPQRQN 90
G +++ QR R N
Sbjct: 721 RGRSGSSSERKNKSRTSQRRSRSN 744
Score = 29.6 bits (65), Expect = 0.62
Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 9/101 (8%)
Query: 9 RKSALRGVSWRHTPSPRPQHSNRTWRLRRRRQSVARSGGGSNRRRSRERRGQNPASLAQG 68
R A RG S TP+ R + +RT RR +RS + R RSR R + S ++
Sbjct: 650 RTPARRGRSRSRTPARRGRSRSRT---PARRSGRSRSRTPARRGRSRSRTPRRGRSRSRS 706
Query: 69 EVAPVGAQRDTQTFQQRPQRQNKIVQGAAHPHSAETLPRTS 109
V R ++ + PQR+ + + + + T R S
Sbjct: 707 LV------RRGRSHSRTPQRRGRSGSSSERKNKSRTSQRRS 741
Score = 28.9 bits (63), Expect = 1.1
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 10/93 (10%)
Query: 9 RKSALRGVSWRHTPSPRPQHSNRTWRLRR-------RRQSVARSGGGSNRRRSR---ERR 58
R A RG S TP+ R + +RT RR RR+S +R+ R RSR RR
Sbjct: 565 RSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRR 624
Query: 59 GQNPASLAQGEVAPVGAQRDTQTFQQRPQRQNK 91
+ + + + + A+R ++ + P R+ +
Sbjct: 625 SRTRSPVRRRSRSRSPARRSGRSRSRTPARRGR 657
Score = 26.2 bits (56), Expect = 6.8
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
Query: 22 PSPRPQHSNRTWRLRRRRQSVARSGGGSNRRRSRERRGQNPA 63
PSPR Q S+ + R RR Q G +R S +RR + P+
Sbjct: 2705 PSPRDQQSSSSERGSRRGQR------GDSRSPSHKRRRETPS 2740
>gi|239743781 PREDICTED: hypothetical protein XP_002344297 [Homo
sapiens]
Length = 228
Score = 32.3 bits (72), Expect = 0.095
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 6/90 (6%)
Query: 21 TPSPRPQHSNRTWRLRRRRQSVARSGGGSNRRRSRERRGQNPASLAQGEVAPVGAQRDTQ 80
TP P P RL + A + G +++++ R R +NPAS AQG P T
Sbjct: 10 TPKPEPPGK----RLPTGHNTQAETRGEADQKKGR--RARNPASGAQGTCVPRRTHTQTD 63
Query: 81 TFQQRPQRQNKIVQGAAHPHSAETLPRTSL 110
++R +R+ + + E L R ++
Sbjct: 64 RDRKRGRRKEREGREGERERERERLKRETV 93
>gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]
Length = 1312
Score = 32.3 bits (72), Expect = 0.095
Identities = 19/57 (33%), Positives = 26/57 (45%)
Query: 19 RHTPSPRPQHSNRTWRLRRRRQSVARSGGGSNRRRSRERRGQNPASLAQGEVAPVGA 75
R + SP P S+ + R R + R GGGS +++ R R S E AP A
Sbjct: 610 RRSASPPPATSSSSSSRRERHRGKHRDGGGSKKKKKRSRSRGEKRSGDGSEKAPAPA 666
Score = 31.6 bits (70), Expect = 0.16
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 25 RPQHSNRTWRLRRRRQSVARSGGGSNRRRSRERR 58
R + +R+ RRR +S R GGS R RSRE+R
Sbjct: 573 RSRSRSRSRSTRRRSRSTDRRRGGSRRSRSREKR 606
>gi|37574618 hemogen [Homo sapiens]
Length = 484
Score = 32.0 bits (71), Expect = 0.12
Identities = 29/110 (26%), Positives = 44/110 (40%), Gaps = 10/110 (9%)
Query: 21 TPSPRPQHSNR-----TWRLRRRRQSVARSGGGSNRRRSRERRGQNPASLAQ--GEVAPV 73
TP P + ++ TW LR R R + S+ G+ Q G+
Sbjct: 15 TPDPHQEENHSPEVIGTWSLRNRELLRKRKAEVHEKETSQWLFGEQKKRKQQRTGKGNRR 74
Query: 74 GAQRDTQT---FQQRPQRQNKIVQGAAHPHSAETLPRTSLAAVFPLAPPP 120
G +R T + +PQ + +IV+ A P +T P S+ VFP P
Sbjct: 75 GRKRQQNTELKVEPQPQIEKEIVEKALAPIEKKTEPPGSITKVFPSVASP 124
>gi|37574622 hemogen [Homo sapiens]
Length = 484
Score = 32.0 bits (71), Expect = 0.12
Identities = 29/110 (26%), Positives = 44/110 (40%), Gaps = 10/110 (9%)
Query: 21 TPSPRPQHSNR-----TWRLRRRRQSVARSGGGSNRRRSRERRGQNPASLAQ--GEVAPV 73
TP P + ++ TW LR R R + S+ G+ Q G+
Sbjct: 15 TPDPHQEENHSPEVIGTWSLRNRELLRKRKAEVHEKETSQWLFGEQKKRKQQRTGKGNRR 74
Query: 74 GAQRDTQT---FQQRPQRQNKIVQGAAHPHSAETLPRTSLAAVFPLAPPP 120
G +R T + +PQ + +IV+ A P +T P S+ VFP P
Sbjct: 75 GRKRQQNTELKVEPQPQIEKEIVEKALAPIEKKTEPPGSITKVFPSVASP 124
>gi|169210350 PREDICTED: hypothetical protein [Homo sapiens]
Length = 165
Score = 31.2 bits (69), Expect = 0.21
Identities = 26/98 (26%), Positives = 35/98 (35%), Gaps = 10/98 (10%)
Query: 19 RHTPSPR---PQHSNRTWRLRRRRQSVARSGGGS-------NRRRSRERRGQNPASLAQG 68
R P R P+ + LRRRR+ G S R R RERRG+ A +
Sbjct: 4 RRRPKKRESPPEPAAADTPLRRRRRRAGEEDGRSGFRLSPQRRTRRRERRGEREADEGEA 63
Query: 69 EVAPVGAQRDTQTFQQRPQRQNKIVQGAAHPHSAETLP 106
P + + + V A H H+A P
Sbjct: 64 TSFPGPCAAHVAGAPEDEDDEEQAVAAAPHAHTATASP 101
>gi|113426339 PREDICTED: hypothetical protein [Homo sapiens]
Length = 165
Score = 31.2 bits (69), Expect = 0.21
Identities = 26/98 (26%), Positives = 35/98 (35%), Gaps = 10/98 (10%)
Query: 19 RHTPSPR---PQHSNRTWRLRRRRQSVARSGGGS-------NRRRSRERRGQNPASLAQG 68
R P R P+ + LRRRR+ G S R R RERRG+ A +
Sbjct: 4 RRRPKKRESPPEPAAADTPLRRRRRRAGEEDGRSGFRLSPQRRTRRRERRGEREADEGEA 63
Query: 69 EVAPVGAQRDTQTFQQRPQRQNKIVQGAAHPHSAETLP 106
P + + + V A H H+A P
Sbjct: 64 TSFPGPCAAHVAGAPEDEDDEEQAVAAAPHAHTATASP 101
>gi|113426005 PREDICTED: hypothetical protein [Homo sapiens]
Length = 165
Score = 31.2 bits (69), Expect = 0.21
Identities = 26/98 (26%), Positives = 35/98 (35%), Gaps = 10/98 (10%)
Query: 19 RHTPSPR---PQHSNRTWRLRRRRQSVARSGGGS-------NRRRSRERRGQNPASLAQG 68
R P R P+ + LRRRR+ G S R R RERRG+ A +
Sbjct: 4 RRRPKKRESPPEPAAADTPLRRRRRRAGEEDGRSGFRLSPQRRTRRRERRGEREADEGEA 63
Query: 69 EVAPVGAQRDTQTFQQRPQRQNKIVQGAAHPHSAETLP 106
P + + + V A H H+A P
Sbjct: 64 TSFPGPCAAHVAGAPEDEDDEEQAVAAAPHAHTATASP 101
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 31.2 bits (69), Expect = 0.21
Identities = 29/115 (25%), Positives = 43/115 (37%), Gaps = 4/115 (3%)
Query: 6 REERKSALRGVSWRHTPSPRPQHSNRTWRLRRRRQSVARSGGGSNRRRSRERRGQNPASL 65
R +S R S R PSPR + S R RR R R RS RR + ++
Sbjct: 299 RRRHRSRSRSYSPRRRPSPRRRPSPRRRTPPRRMPPPPRH----RRSRSPVRRRRRSSAS 354
Query: 66 AQGEVAPVGAQRDTQTFQQRPQRQNKIVQGAAHPHSAETLPRTSLAAVFPLAPPP 120
G + + R ++ P+R + + + + PR P PPP
Sbjct: 355 LSGSSSSSSSSRSRSPPKKPPKRTSSPPRKTRRLSPSASPPRRRHRPSPPATPPP 409
Score = 30.0 bits (66), Expect = 0.47
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 8/77 (10%)
Query: 23 SPRPQHSNRTWRLRRRRQSVARSGGGSNRRRSRERRGQNPA------SLAQGEVAPVGAQ 76
SP PQ SNRT + R SG + + + +R +PA L++ E G
Sbjct: 414 SPTPQQSNRTRKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKGGKM 473
Query: 77 RDTQTFQQRPQ--RQNK 91
+ QQR Q RQN+
Sbjct: 474 AAADSVQQRRQYRRQNQ 490
Score = 27.3 bits (59), Expect = 3.1
Identities = 32/122 (26%), Positives = 45/122 (36%), Gaps = 13/122 (10%)
Query: 4 VGREERKSALRGVSWRHTPSPRPQHSNRTWRLRRRRQSVARSGGGSNRRRSRERRGQNPA 63
VGR R S R S PSPR + + R RRRR + +R RR +PA
Sbjct: 517 VGRRRRHSPSRSAS----PSPRKRQKETSPRGRRRR--------SPSPPPTRRRRSPSPA 564
Query: 64 SLAQGEVAPVGAQRDTQTFQQRPQRQNKIVQGAAHPHSAETLPRTSLAAVFPLAPPPTWN 123
+ P R +T P+R++ + + P P PPP
Sbjct: 565 PPPRRRRTPTPPPR-RRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKR 623
Query: 124 KA 125
+A
Sbjct: 624 RA 625
Score = 27.3 bits (59), Expect = 3.1
Identities = 24/107 (22%), Positives = 35/107 (32%), Gaps = 4/107 (3%)
Query: 19 RHTPSPRPQHSNRTWRLRRRRQSVARSGGGSNRRRSRERRGQNPASLAQGEVAPVGAQRD 78
RH+PSPRP R + V R S +RR P P ++
Sbjct: 681 RHSPSPRP----RAPQTSSSPPPVRRGASSSPQRRQSPSPSTRPIRRVSRTPEPKKIKKA 736
Query: 79 TQTFQQRPQRQNKIVQGAAHPHSAETLPRTSLAAVFPLAPPPTWNKA 125
Q +R + + P A P + V +P W+ A
Sbjct: 737 ASPSPQSVRRVSSSRSVSGSPEPAAKKPPAPPSPVQSQSPSTNWSPA 783
Score = 26.2 bits (56), Expect = 6.8
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 5/93 (5%)
Query: 10 KSALRGVSWRHTPSPRPQHSNRTWRLRRRRQSVARSGGGSNRRRSRERRGQNPASLAQGE 69
+S R S T S P H+ R R R +S + S RRR RR P
Sbjct: 277 RSRSRSKSRSRTRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRRPSPRRRTPPR-----R 331
Query: 70 VAPVGAQRDTQTFQQRPQRQNKIVQGAAHPHSA 102
+ P R +++ +R +R + + G++ S+
Sbjct: 332 MPPPPRHRRSRSPVRRRRRSSASLSGSSSSSSS 364
>gi|58331242 formin homology 2 domain containing 3 [Homo sapiens]
Length = 1439
Score = 30.8 bits (68), Expect = 0.28
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 10/89 (11%)
Query: 37 RRRQSVARSGGGS----NRRRSRERRGQNPASLAQGEVAPVGAQRDT-QTFQQRPQRQNK 91
RRR SV SGGG +RRRSR Q+ S +P + + Q R R+
Sbjct: 341 RRRASVCSSGGGEHRGLDRRRSRRHSVQSIKSTLSAPTSPCSQSAPSFKPNQVRDLREKY 400
Query: 92 IVQG-----AAHPHSAETLPRTSLAAVFP 115
G ++ P S ++P T ++V P
Sbjct: 401 SNFGNNSYHSSRPSSGSSVPTTPTSSVSP 429
>gi|239756937 PREDICTED: hypothetical protein [Homo sapiens]
Length = 294
Score = 30.8 bits (68), Expect = 0.28
Identities = 31/103 (30%), Positives = 39/103 (37%), Gaps = 22/103 (21%)
Query: 23 SPRPQHSNRTWRLRRRRQSVARSGGGSNRRRSRERRGQNPASLAQGEVAPVGAQRDTQTF 82
SPRP RR R G GS R R R R ++P + G VA
Sbjct: 61 SPRPFPPRPERPSRRHRAGCGAHGPGS-RGRERRRGSRDPPA---GPVA----------- 105
Query: 83 QQRPQRQNKIVQGAAHPHSAETLPRTSLAAVFPLAPPPTWNKA 125
R + + + G+A P S P A P A PP W+ A
Sbjct: 106 --RARARGRSAPGSAQPASGAAGP-----AAAPEAAPPAWDPA 141
>gi|239751449 PREDICTED: hypothetical protein XP_002347867 [Homo
sapiens]
Length = 315
Score = 30.8 bits (68), Expect = 0.28
Identities = 31/103 (30%), Positives = 39/103 (37%), Gaps = 22/103 (21%)
Query: 23 SPRPQHSNRTWRLRRRRQSVARSGGGSNRRRSRERRGQNPASLAQGEVAPVGAQRDTQTF 82
SPRP RR R G GS R R R R ++P + G VA
Sbjct: 61 SPRPFPPRPERPSRRHRAGCGAHGPGS-RGRERRRGSRDPPA---GPVA----------- 105
Query: 83 QQRPQRQNKIVQGAAHPHSAETLPRTSLAAVFPLAPPPTWNKA 125
R + + + G+A P S P A P A PP W+ A
Sbjct: 106 --RARARGRSAPGSAQPASGAAGP-----AAAPEAAPPAWDPA 141
>gi|239750574 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1297
Score = 30.8 bits (68), Expect = 0.28
Identities = 26/77 (33%), Positives = 32/77 (41%), Gaps = 10/77 (12%)
Query: 5 GREERKSALRGVSWRHTPSPRPQHSNRTWRLRRRRQSVARSGGGSNRRRSRERR---GQN 61
GR R A S RH P R + S RRR +VA +GG R + RR GQ
Sbjct: 920 GRAHRPGAQGAPSHRHRPGARGRRS-------RRRAAVALAGGAHPARAALGRRRGGGQA 972
Query: 62 PASLAQGEVAPVGAQRD 78
+ A + G Q D
Sbjct: 973 VGARAAHQARLAGGQVD 989
>gi|239745954 PREDICTED: hypothetical protein XP_002343623 [Homo
sapiens]
Length = 315
Score = 30.8 bits (68), Expect = 0.28
Identities = 31/103 (30%), Positives = 39/103 (37%), Gaps = 22/103 (21%)
Query: 23 SPRPQHSNRTWRLRRRRQSVARSGGGSNRRRSRERRGQNPASLAQGEVAPVGAQRDTQTF 82
SPRP RR R G GS R R R R ++P + G VA
Sbjct: 61 SPRPFPPRPERPSRRHRAGCGAHGPGS-RGRERRRGSRDPPA---GPVA----------- 105
Query: 83 QQRPQRQNKIVQGAAHPHSAETLPRTSLAAVFPLAPPPTWNKA 125
R + + + G+A P S P A P A PP W+ A
Sbjct: 106 --RARARGRSAPGSAQPASGAAGP-----AAAPEAAPPAWDPA 141
>gi|169205732 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1297
Score = 30.8 bits (68), Expect = 0.28
Identities = 26/77 (33%), Positives = 32/77 (41%), Gaps = 10/77 (12%)
Query: 5 GREERKSALRGVSWRHTPSPRPQHSNRTWRLRRRRQSVARSGGGSNRRRSRERR---GQN 61
GR R A S RH P R + S RRR +VA +GG R + RR GQ
Sbjct: 920 GRAHRPGAQGAPSHRHRPGARGRRS-------RRRAAVALAGGAHPARAALGRRRGGGQA 972
Query: 62 PASLAQGEVAPVGAQRD 78
+ A + G Q D
Sbjct: 973 VGARAAHQARLAGGQVD 989
>gi|239743051 PREDICTED: hypothetical protein XP_002342747 [Homo
sapiens]
Length = 306
Score = 30.4 bits (67), Expect = 0.36
Identities = 28/97 (28%), Positives = 39/97 (40%), Gaps = 5/97 (5%)
Query: 21 TPSPRPQHSNRTWRLRRRRQSVARSGGGSNRRR-SRERRGQNPASLAQGEVAPVGAQRDT 79
T +P P S R+R Q + GG+ +RR SR + PA G G++
Sbjct: 178 TAAPVPTSSGHRTEKRKRLQLQCQPAGGTGQRRGSRSSPSRQPAG---GTGQRRGSRSSP 234
Query: 80 QTFQQRPQ-RQNKIVQGAAHPHSAETLPRTSLAAVFP 115
QQR Q R+ + Q P R + AA P
Sbjct: 235 SADQQRAQDREEEAAQPQRRPAGGTGQRRGTAAAPVP 271
>gi|239508698 PREDICTED: similar to mucin [Homo sapiens]
Length = 265
Score = 30.4 bits (67), Expect = 0.36
Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 12/93 (12%)
Query: 23 SPRPQHSNRTWRLRRRRQSVARSGGGSNRRRSRERRGQNPASLAQG--------EVAPVG 74
+P P S R+ +Q R GG+ +RR G +P++ QG AP
Sbjct: 92 APAPTSSGHRTEKRKPQQPQCRPAGGTGQRRG---SGSSPSADQQGAQDREEEAAAAPAP 148
Query: 75 AQRDTQTFQQRPQR-QNKIVQGAAHPHSAETLP 106
R +T +++PQ+ Q + G + + P
Sbjct: 149 TSRGHRTEKRKPQQPQRRPAAGTGQRRGSRSSP 181
>gi|40353729 Ras and Rab interactor 3 [Homo sapiens]
Length = 985
Score = 30.4 bits (67), Expect = 0.36
Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 10/77 (12%)
Query: 51 RRRSRER---RGQNPASLAQGEVAPVGAQRDTQTFQQRPQRQNKIVQG----AAHPHSAE 103
RRR ER Q+P A+G+ + Q + + P+ + Q A+ PHS
Sbjct: 388 RRRVSERVSLEDQSPGMAAEGDQLSLPPQGTSDGPEDTPRESTEQGQDTEVKASDPHSMP 447
Query: 104 TLPRTSLAAVFPLAPPP 120
LPRT A P PPP
Sbjct: 448 ELPRT---AKQPPVPPP 461
>gi|89276756 serine/threonine-protein kinase PRP4K [Homo sapiens]
Length = 1007
Score = 30.4 bits (67), Expect = 0.36
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 19 RHTPSPRPQHSNRTWRLRRRRQSVARSGGGSNRRRSRERRGQNPASLAQG 68
R + SPR + R R R RR+S +R GG R RS+ + + SL++G
Sbjct: 463 RRSRSPRRRDRGRRSRSRLRRRSRSR-GGRRRRSRSKVKEDKFKGSLSEG 511
>gi|169214061 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 30.0 bits (66), Expect = 0.47
Identities = 25/85 (29%), Positives = 33/85 (38%), Gaps = 4/85 (4%)
Query: 22 PSPRPQHSNRTWRL--RRRRQSVARSGGGSNRRRSRERRGQNPASLAQGEVAPVGAQRDT 79
P RP S WRL RRR + A S G + RR+ G A P A
Sbjct: 218 PEQRPHLSRGQWRLLPRRRPERAAGSAGSCSSRRALPASGSGAAMTGSWAAPPRPAWAGL 277
Query: 80 QTF--QQRPQRQNKIVQGAAHPHSA 102
F +R +RQ+ + P S+
Sbjct: 278 GPFWHLRRSRRQDGLCCPGPRPPSS 302
>gi|169214437 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 30.0 bits (66), Expect = 0.47
Identities = 25/85 (29%), Positives = 33/85 (38%), Gaps = 4/85 (4%)
Query: 22 PSPRPQHSNRTWRL--RRRRQSVARSGGGSNRRRSRERRGQNPASLAQGEVAPVGAQRDT 79
P RP S WRL RRR + A S G + RR+ G A P A
Sbjct: 218 PEQRPHLSRGQWRLLPRRRPERAAGSAGSCSSRRALPASGSGAAMTGSWAAPPRPAWAGL 277
Query: 80 QTF--QQRPQRQNKIVQGAAHPHSA 102
F +R +RQ+ + P S+
Sbjct: 278 GPFWHLRRSRRQDGLCCPGPRPPSS 302
>gi|169213353 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 30.0 bits (66), Expect = 0.47
Identities = 25/85 (29%), Positives = 33/85 (38%), Gaps = 4/85 (4%)
Query: 22 PSPRPQHSNRTWRL--RRRRQSVARSGGGSNRRRSRERRGQNPASLAQGEVAPVGAQRDT 79
P RP S WRL RRR + A S G + RR+ G A P A
Sbjct: 218 PEQRPHLSRGQWRLLPRRRPERAAGSAGSCSSRRALPASGSGAAMTGSWAAPPRPAWAGL 277
Query: 80 QTF--QQRPQRQNKIVQGAAHPHSA 102
F +R +RQ+ + P S+
Sbjct: 278 GPFWHLRRSRRQDGLCCPGPRPPSS 302
>gi|239745068 PREDICTED: similar to hCG2042704 [Homo sapiens]
Length = 618
Score = 30.0 bits (66), Expect = 0.47
Identities = 21/54 (38%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Query: 25 RPQHSNRTWRLRRRRQSVARSGGGSNRRRSRERRGQNPASLAQGEVAPVGAQRD 78
R H RT RL + AR GGG R RRG +PA PV +RD
Sbjct: 6 RHNHGRRTGRLSQS----AREGGGWARPARAARRGGHPAHFCWSR-PPVSRERD 54
>gi|40805108 putative small membrane protein NID67 [Homo sapiens]
Length = 135
Score = 30.0 bits (66), Expect = 0.47
Identities = 26/90 (28%), Positives = 37/90 (41%), Gaps = 8/90 (8%)
Query: 3 VVGREERKSALRGVSWRHTPSPRPQ---HSNRTWRLRRRRQSVARSGGGSNRRRSRERRG 59
V G E +L ++ P PQ +W R RSGGG + R E
Sbjct: 12 VEGEPETPWSLPSLAGSFLPERSPQGTLEEELSWSCRG--PGTGRSGGGPQQPRIPEPAA 69
Query: 60 QNPASLAQGEVAPVGAQRDTQTFQQRPQRQ 89
+ S A + P GA+R TFQ+ P+ +
Sbjct: 70 RPGRSCA---LPPPGARRSRGTFQELPRAE 96
>gi|7706607 LEM domain containing 3 [Homo sapiens]
Length = 911
Score = 30.0 bits (66), Expect = 0.47
Identities = 17/55 (30%), Positives = 24/55 (43%)
Query: 21 TPSPRPQHSNRTWRLRRRRQSVARSGGGSNRRRSRERRGQNPASLAQGEVAPVGA 75
T S RP + + +LR Q RSGG N+ R+ A++A A A
Sbjct: 32 TESTRPVYLKKLKKLREEEQQQHRSGGRGNKTRNSNNNNTAAATVAAAGPAAAAA 86
>gi|4557779 myocilin [Homo sapiens]
Length = 504
Score = 29.6 bits (65), Expect = 0.62
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 34 RLRRRRQSVARSGGGSNRRRSRERRGQNPASLAQGEVAPVGAQR------DTQTFQQ 84
RLR+ +++AR S++ +R RRGQ P + P G++ DT FQ+
Sbjct: 158 RLRQENENLARRLESSSQEVARLRRGQCPQTRDTARAVPPGSREVSTWNLDTLAFQE 214
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.127 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,686,544
Number of Sequences: 37866
Number of extensions: 254904
Number of successful extensions: 1755
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 128
Number of HSP's that attempted gapping in prelim test: 1568
Number of HSP's gapped (non-prelim): 289
length of query: 125
length of database: 18,247,518
effective HSP length: 90
effective length of query: 35
effective length of database: 14,839,578
effective search space: 519385230
effective search space used: 519385230
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.