Guide to the Human Genome
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Search of human proteins with 88957138

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|88957138 PREDICTED: hypothetical protein [Homo sapiens]
         (125 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169163739 PREDICTED: hypothetical protein [Homo sapiens]           257   2e-69
gi|88957138 PREDICTED: hypothetical protein [Homo sapiens]            257   2e-69
gi|88953651 PREDICTED: hypothetical protein [Homo sapiens]            257   2e-69
gi|38488727 arginine/serine-rich coiled-coil 1 [Homo sapiens]          33   0.043
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]        33   0.073
gi|239743781 PREDICTED: hypothetical protein XP_002344297 [Homo ...    32   0.095
gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]         32   0.095
gi|37574618 hemogen [Homo sapiens]                                     32   0.12 
gi|37574622 hemogen [Homo sapiens]                                     32   0.12 
gi|169210350 PREDICTED: hypothetical protein [Homo sapiens]            31   0.21 
gi|113426339 PREDICTED: hypothetical protein [Homo sapiens]            31   0.21 
gi|113426005 PREDICTED: hypothetical protein [Homo sapiens]            31   0.21 
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]         31   0.21 
gi|58331242 formin homology 2 domain containing 3 [Homo sapiens]       31   0.28 
gi|239756937 PREDICTED: hypothetical protein [Homo sapiens]            31   0.28 
gi|239751449 PREDICTED: hypothetical protein XP_002347867 [Homo ...    31   0.28 
gi|239750574 PREDICTED: hypothetical protein [Homo sapiens]            31   0.28 
gi|239745954 PREDICTED: hypothetical protein XP_002343623 [Homo ...    31   0.28 
gi|169205732 PREDICTED: hypothetical protein [Homo sapiens]            31   0.28 
gi|239743051 PREDICTED: hypothetical protein XP_002342747 [Homo ...    30   0.36 
gi|239508698 PREDICTED: similar to mucin [Homo sapiens]                30   0.36 
gi|40353729 Ras and Rab interactor 3 [Homo sapiens]                    30   0.36 
gi|89276756 serine/threonine-protein kinase PRP4K [Homo sapiens]       30   0.36 
gi|169214061 PREDICTED: hypothetical protein [Homo sapiens]            30   0.47 
gi|169214437 PREDICTED: hypothetical protein [Homo sapiens]            30   0.47 
gi|169213353 PREDICTED: hypothetical protein [Homo sapiens]            30   0.47 
gi|239745068 PREDICTED: similar to hCG2042704 [Homo sapiens]           30   0.47 
gi|40805108 putative small membrane protein NID67 [Homo sapiens]       30   0.47 
gi|7706607 LEM domain containing 3 [Homo sapiens]                      30   0.47 
gi|4557779 myocilin [Homo sapiens]                                     30   0.62 

>gi|169163739 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 125

 Score =  257 bits (656), Expect = 2e-69
 Identities = 125/125 (100%), Positives = 125/125 (100%)

Query: 1   MLVVGREERKSALRGVSWRHTPSPRPQHSNRTWRLRRRRQSVARSGGGSNRRRSRERRGQ 60
           MLVVGREERKSALRGVSWRHTPSPRPQHSNRTWRLRRRRQSVARSGGGSNRRRSRERRGQ
Sbjct: 1   MLVVGREERKSALRGVSWRHTPSPRPQHSNRTWRLRRRRQSVARSGGGSNRRRSRERRGQ 60

Query: 61  NPASLAQGEVAPVGAQRDTQTFQQRPQRQNKIVQGAAHPHSAETLPRTSLAAVFPLAPPP 120
           NPASLAQGEVAPVGAQRDTQTFQQRPQRQNKIVQGAAHPHSAETLPRTSLAAVFPLAPPP
Sbjct: 61  NPASLAQGEVAPVGAQRDTQTFQQRPQRQNKIVQGAAHPHSAETLPRTSLAAVFPLAPPP 120

Query: 121 TWNKA 125
           TWNKA
Sbjct: 121 TWNKA 125


>gi|88957138 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 125

 Score =  257 bits (656), Expect = 2e-69
 Identities = 125/125 (100%), Positives = 125/125 (100%)

Query: 1   MLVVGREERKSALRGVSWRHTPSPRPQHSNRTWRLRRRRQSVARSGGGSNRRRSRERRGQ 60
           MLVVGREERKSALRGVSWRHTPSPRPQHSNRTWRLRRRRQSVARSGGGSNRRRSRERRGQ
Sbjct: 1   MLVVGREERKSALRGVSWRHTPSPRPQHSNRTWRLRRRRQSVARSGGGSNRRRSRERRGQ 60

Query: 61  NPASLAQGEVAPVGAQRDTQTFQQRPQRQNKIVQGAAHPHSAETLPRTSLAAVFPLAPPP 120
           NPASLAQGEVAPVGAQRDTQTFQQRPQRQNKIVQGAAHPHSAETLPRTSLAAVFPLAPPP
Sbjct: 61  NPASLAQGEVAPVGAQRDTQTFQQRPQRQNKIVQGAAHPHSAETLPRTSLAAVFPLAPPP 120

Query: 121 TWNKA 125
           TWNKA
Sbjct: 121 TWNKA 125


>gi|88953651 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 125

 Score =  257 bits (656), Expect = 2e-69
 Identities = 125/125 (100%), Positives = 125/125 (100%)

Query: 1   MLVVGREERKSALRGVSWRHTPSPRPQHSNRTWRLRRRRQSVARSGGGSNRRRSRERRGQ 60
           MLVVGREERKSALRGVSWRHTPSPRPQHSNRTWRLRRRRQSVARSGGGSNRRRSRERRGQ
Sbjct: 1   MLVVGREERKSALRGVSWRHTPSPRPQHSNRTWRLRRRRQSVARSGGGSNRRRSRERRGQ 60

Query: 61  NPASLAQGEVAPVGAQRDTQTFQQRPQRQNKIVQGAAHPHSAETLPRTSLAAVFPLAPPP 120
           NPASLAQGEVAPVGAQRDTQTFQQRPQRQNKIVQGAAHPHSAETLPRTSLAAVFPLAPPP
Sbjct: 61  NPASLAQGEVAPVGAQRDTQTFQQRPQRQNKIVQGAAHPHSAETLPRTSLAAVFPLAPPP 120

Query: 121 TWNKA 125
           TWNKA
Sbjct: 121 TWNKA 125


>gi|38488727 arginine/serine-rich coiled-coil 1 [Homo sapiens]
          Length = 334

 Score = 33.5 bits (75), Expect = 0.043
 Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 5/60 (8%)

Query: 9  RKSALRGVSWRHTPSPRPQHSNRTWRLRRRRQSVARSGGGSNRRRSRER-RGQNPASLAQ 67
          RKS  +  SW     PR    +R    RRR +S + S  GS R+RSR R RG+  +   Q
Sbjct: 42 RKSRSKSRSWSRDLQPRSHSYDR----RRRHRSSSSSSYGSRRKRSRSRSRGRGKSYRVQ 97


>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
          Length = 2752

 Score = 32.7 bits (73), Expect = 0.073
 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 3/64 (4%)

Query: 14   RGVSWRHTPSPRPQHSNRTWRLRRRRQSVARSGGGSNRRRSRERRGQNPASLAQGEVAPV 73
            RG S  H+ SP  Q S+RT   RRR +S       ++R+RSR R    P   ++   +P 
Sbjct: 1815 RGGSGYHSRSPARQESSRTSSRRRRGRSRTPP---TSRKRSRSRTSPAPWKRSRSRASPA 1871

Query: 74   GAQR 77
              +R
Sbjct: 1872 THRR 1875



 Score = 31.6 bits (70), Expect = 0.16
 Identities = 29/98 (29%), Positives = 39/98 (39%), Gaps = 13/98 (13%)

Query: 11  SALRGVSWRHTPSPRPQHSNRTWRLRRRRQSVARSGGGSNRRRSRERRGQNPASLAQGEV 70
           +A RG S   TP+ R    +R+ + RR R +       S +RR R R  Q P        
Sbjct: 489 TAKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGRSRSPQRRGRSRSPQRP-------- 540

Query: 71  APVGAQRDTQTFQQRPQRQNKIVQGAAHPHSAETLPRT 108
              G  R   T  QR  R     +G +H  S  T  R+
Sbjct: 541 ---GWSRSRNT--QRRGRSRSARRGRSHSRSPATRGRS 573



 Score = 30.0 bits (66), Expect = 0.47
 Identities = 25/84 (29%), Positives = 33/84 (39%), Gaps = 2/84 (2%)

Query: 9   RKSALRGVSWRHTPSPRPQHSNRTWRLRRRRQSVARSGGGSNRRRSRERRGQNPASLAQ- 67
           R  A RG S   TP+ R   S      RR R        G +R RS  RRG++ +   Q 
Sbjct: 661 RTPARRGRSRSRTPARRSGRSRSRTPARRGRSRSRTPRRGRSRSRSLVRRGRSHSRTPQR 720

Query: 68  -GEVAPVGAQRDTQTFQQRPQRQN 90
            G       +++     QR  R N
Sbjct: 721 RGRSGSSSERKNKSRTSQRRSRSN 744



 Score = 29.6 bits (65), Expect = 0.62
 Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 9/101 (8%)

Query: 9   RKSALRGVSWRHTPSPRPQHSNRTWRLRRRRQSVARSGGGSNRRRSRERRGQNPASLAQG 68
           R  A RG S   TP+ R +  +RT     RR   +RS   + R RSR R  +   S ++ 
Sbjct: 650 RTPARRGRSRSRTPARRGRSRSRT---PARRSGRSRSRTPARRGRSRSRTPRRGRSRSRS 706

Query: 69  EVAPVGAQRDTQTFQQRPQRQNKIVQGAAHPHSAETLPRTS 109
            V      R  ++  + PQR+ +    +   + + T  R S
Sbjct: 707 LV------RRGRSHSRTPQRRGRSGSSSERKNKSRTSQRRS 741



 Score = 28.9 bits (63), Expect = 1.1
 Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 10/93 (10%)

Query: 9   RKSALRGVSWRHTPSPRPQHSNRTWRLRR-------RRQSVARSGGGSNRRRSR---ERR 58
           R  A RG S   TP+ R +  +RT   RR       RR+S +R+     R RSR    RR
Sbjct: 565 RSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRR 624

Query: 59  GQNPASLAQGEVAPVGAQRDTQTFQQRPQRQNK 91
            +  + + +   +   A+R  ++  + P R+ +
Sbjct: 625 SRTRSPVRRRSRSRSPARRSGRSRSRTPARRGR 657



 Score = 26.2 bits (56), Expect = 6.8
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 22   PSPRPQHSNRTWRLRRRRQSVARSGGGSNRRRSRERRGQNPA 63
            PSPR Q S+ + R  RR Q       G +R  S +RR + P+
Sbjct: 2705 PSPRDQQSSSSERGSRRGQR------GDSRSPSHKRRRETPS 2740


>gi|239743781 PREDICTED: hypothetical protein XP_002344297 [Homo
           sapiens]
          Length = 228

 Score = 32.3 bits (72), Expect = 0.095
 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 6/90 (6%)

Query: 21  TPSPRPQHSNRTWRLRRRRQSVARSGGGSNRRRSRERRGQNPASLAQGEVAPVGAQRDTQ 80
           TP P P       RL     + A + G +++++ R  R +NPAS AQG   P      T 
Sbjct: 10  TPKPEPPGK----RLPTGHNTQAETRGEADQKKGR--RARNPASGAQGTCVPRRTHTQTD 63

Query: 81  TFQQRPQRQNKIVQGAAHPHSAETLPRTSL 110
             ++R +R+ +  +        E L R ++
Sbjct: 64  RDRKRGRRKEREGREGERERERERLKRETV 93


>gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]
          Length = 1312

 Score = 32.3 bits (72), Expect = 0.095
 Identities = 19/57 (33%), Positives = 26/57 (45%)

Query: 19  RHTPSPRPQHSNRTWRLRRRRQSVARSGGGSNRRRSRERRGQNPASLAQGEVAPVGA 75
           R + SP P  S+ +   R R +   R GGGS +++ R R      S    E AP  A
Sbjct: 610 RRSASPPPATSSSSSSRRERHRGKHRDGGGSKKKKKRSRSRGEKRSGDGSEKAPAPA 666



 Score = 31.6 bits (70), Expect = 0.16
 Identities = 16/34 (47%), Positives = 21/34 (61%)

Query: 25  RPQHSNRTWRLRRRRQSVARSGGGSNRRRSRERR 58
           R +  +R+   RRR +S  R  GGS R RSRE+R
Sbjct: 573 RSRSRSRSRSTRRRSRSTDRRRGGSRRSRSREKR 606


>gi|37574618 hemogen [Homo sapiens]
          Length = 484

 Score = 32.0 bits (71), Expect = 0.12
 Identities = 29/110 (26%), Positives = 44/110 (40%), Gaps = 10/110 (9%)

Query: 21  TPSPRPQHSNR-----TWRLRRRRQSVARSGGGSNRRRSRERRGQNPASLAQ--GEVAPV 73
           TP P  + ++      TW LR R     R      +  S+   G+      Q  G+    
Sbjct: 15  TPDPHQEENHSPEVIGTWSLRNRELLRKRKAEVHEKETSQWLFGEQKKRKQQRTGKGNRR 74

Query: 74  GAQRDTQT---FQQRPQRQNKIVQGAAHPHSAETLPRTSLAAVFPLAPPP 120
           G +R   T    + +PQ + +IV+ A  P   +T P  S+  VFP    P
Sbjct: 75  GRKRQQNTELKVEPQPQIEKEIVEKALAPIEKKTEPPGSITKVFPSVASP 124


>gi|37574622 hemogen [Homo sapiens]
          Length = 484

 Score = 32.0 bits (71), Expect = 0.12
 Identities = 29/110 (26%), Positives = 44/110 (40%), Gaps = 10/110 (9%)

Query: 21  TPSPRPQHSNR-----TWRLRRRRQSVARSGGGSNRRRSRERRGQNPASLAQ--GEVAPV 73
           TP P  + ++      TW LR R     R      +  S+   G+      Q  G+    
Sbjct: 15  TPDPHQEENHSPEVIGTWSLRNRELLRKRKAEVHEKETSQWLFGEQKKRKQQRTGKGNRR 74

Query: 74  GAQRDTQT---FQQRPQRQNKIVQGAAHPHSAETLPRTSLAAVFPLAPPP 120
           G +R   T    + +PQ + +IV+ A  P   +T P  S+  VFP    P
Sbjct: 75  GRKRQQNTELKVEPQPQIEKEIVEKALAPIEKKTEPPGSITKVFPSVASP 124


>gi|169210350 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 165

 Score = 31.2 bits (69), Expect = 0.21
 Identities = 26/98 (26%), Positives = 35/98 (35%), Gaps = 10/98 (10%)

Query: 19  RHTPSPR---PQHSNRTWRLRRRRQSVARSGGGS-------NRRRSRERRGQNPASLAQG 68
           R  P  R   P+ +     LRRRR+      G S        R R RERRG+  A   + 
Sbjct: 4   RRRPKKRESPPEPAAADTPLRRRRRRAGEEDGRSGFRLSPQRRTRRRERRGEREADEGEA 63

Query: 69  EVAPVGAQRDTQTFQQRPQRQNKIVQGAAHPHSAETLP 106
              P           +    + + V  A H H+A   P
Sbjct: 64  TSFPGPCAAHVAGAPEDEDDEEQAVAAAPHAHTATASP 101


>gi|113426339 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 165

 Score = 31.2 bits (69), Expect = 0.21
 Identities = 26/98 (26%), Positives = 35/98 (35%), Gaps = 10/98 (10%)

Query: 19  RHTPSPR---PQHSNRTWRLRRRRQSVARSGGGS-------NRRRSRERRGQNPASLAQG 68
           R  P  R   P+ +     LRRRR+      G S        R R RERRG+  A   + 
Sbjct: 4   RRRPKKRESPPEPAAADTPLRRRRRRAGEEDGRSGFRLSPQRRTRRRERRGEREADEGEA 63

Query: 69  EVAPVGAQRDTQTFQQRPQRQNKIVQGAAHPHSAETLP 106
              P           +    + + V  A H H+A   P
Sbjct: 64  TSFPGPCAAHVAGAPEDEDDEEQAVAAAPHAHTATASP 101


>gi|113426005 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 165

 Score = 31.2 bits (69), Expect = 0.21
 Identities = 26/98 (26%), Positives = 35/98 (35%), Gaps = 10/98 (10%)

Query: 19  RHTPSPR---PQHSNRTWRLRRRRQSVARSGGGS-------NRRRSRERRGQNPASLAQG 68
           R  P  R   P+ +     LRRRR+      G S        R R RERRG+  A   + 
Sbjct: 4   RRRPKKRESPPEPAAADTPLRRRRRRAGEEDGRSGFRLSPQRRTRRRERRGEREADEGEA 63

Query: 69  EVAPVGAQRDTQTFQQRPQRQNKIVQGAAHPHSAETLP 106
              P           +    + + V  A H H+A   P
Sbjct: 64  TSFPGPCAAHVAGAPEDEDDEEQAVAAAPHAHTATASP 101


>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
          Length = 904

 Score = 31.2 bits (69), Expect = 0.21
 Identities = 29/115 (25%), Positives = 43/115 (37%), Gaps = 4/115 (3%)

Query: 6   REERKSALRGVSWRHTPSPRPQHSNRTWRLRRRRQSVARSGGGSNRRRSRERRGQNPASL 65
           R   +S  R  S R  PSPR + S R     RR     R      R RS  RR +  ++ 
Sbjct: 299 RRRHRSRSRSYSPRRRPSPRRRPSPRRRTPPRRMPPPPRH----RRSRSPVRRRRRSSAS 354

Query: 66  AQGEVAPVGAQRDTQTFQQRPQRQNKIVQGAAHPHSAETLPRTSLAAVFPLAPPP 120
             G  +   + R     ++ P+R +   +       + + PR       P  PPP
Sbjct: 355 LSGSSSSSSSSRSRSPPKKPPKRTSSPPRKTRRLSPSASPPRRRHRPSPPATPPP 409



 Score = 30.0 bits (66), Expect = 0.47
 Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 8/77 (10%)

Query: 23  SPRPQHSNRTWRLRRRRQSVARSGGGSNRRRSRERRGQNPA------SLAQGEVAPVGAQ 76
           SP PQ SNRT + R        SG  +  + + +R   +PA       L++ E    G  
Sbjct: 414 SPTPQQSNRTRKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKGGKM 473

Query: 77  RDTQTFQQRPQ--RQNK 91
               + QQR Q  RQN+
Sbjct: 474 AAADSVQQRRQYRRQNQ 490



 Score = 27.3 bits (59), Expect = 3.1
 Identities = 32/122 (26%), Positives = 45/122 (36%), Gaps = 13/122 (10%)

Query: 4   VGREERKSALRGVSWRHTPSPRPQHSNRTWRLRRRRQSVARSGGGSNRRRSRERRGQNPA 63
           VGR  R S  R  S    PSPR +    + R RRRR          +   +R RR  +PA
Sbjct: 517 VGRRRRHSPSRSAS----PSPRKRQKETSPRGRRRR--------SPSPPPTRRRRSPSPA 564

Query: 64  SLAQGEVAPVGAQRDTQTFQQRPQRQNKIVQGAAHPHSAETLPRTSLAAVFPLAPPPTWN 123
              +    P    R  +T    P+R++   +  + P      P           PPP   
Sbjct: 565 PPPRRRRTPTPPPR-RRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKR 623

Query: 124 KA 125
           +A
Sbjct: 624 RA 625



 Score = 27.3 bits (59), Expect = 3.1
 Identities = 24/107 (22%), Positives = 35/107 (32%), Gaps = 4/107 (3%)

Query: 19  RHTPSPRPQHSNRTWRLRRRRQSVARSGGGSNRRRSRERRGQNPASLAQGEVAPVGAQRD 78
           RH+PSPRP    R  +       V R    S +RR        P         P   ++ 
Sbjct: 681 RHSPSPRP----RAPQTSSSPPPVRRGASSSPQRRQSPSPSTRPIRRVSRTPEPKKIKKA 736

Query: 79  TQTFQQRPQRQNKIVQGAAHPHSAETLPRTSLAAVFPLAPPPTWNKA 125
                Q  +R +     +  P  A   P    + V   +P   W+ A
Sbjct: 737 ASPSPQSVRRVSSSRSVSGSPEPAAKKPPAPPSPVQSQSPSTNWSPA 783



 Score = 26.2 bits (56), Expect = 6.8
 Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 5/93 (5%)

Query: 10  KSALRGVSWRHTPSPRPQHSNRTWRLRRRRQSVARSGGGSNRRRSRERRGQNPASLAQGE 69
           +S  R  S   T S  P H+    R R R +S +     S RRR   RR   P       
Sbjct: 277 RSRSRSKSRSRTRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRRPSPRRRTPPR-----R 331

Query: 70  VAPVGAQRDTQTFQQRPQRQNKIVQGAAHPHSA 102
           + P    R +++  +R +R +  + G++   S+
Sbjct: 332 MPPPPRHRRSRSPVRRRRRSSASLSGSSSSSSS 364


>gi|58331242 formin homology 2 domain containing 3 [Homo sapiens]
          Length = 1439

 Score = 30.8 bits (68), Expect = 0.28
 Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 10/89 (11%)

Query: 37  RRRQSVARSGGGS----NRRRSRERRGQNPASLAQGEVAPVGAQRDT-QTFQQRPQRQNK 91
           RRR SV  SGGG     +RRRSR    Q+  S      +P      + +  Q R  R+  
Sbjct: 341 RRRASVCSSGGGEHRGLDRRRSRRHSVQSIKSTLSAPTSPCSQSAPSFKPNQVRDLREKY 400

Query: 92  IVQG-----AAHPHSAETLPRTSLAAVFP 115
              G     ++ P S  ++P T  ++V P
Sbjct: 401 SNFGNNSYHSSRPSSGSSVPTTPTSSVSP 429


>gi|239756937 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 294

 Score = 30.8 bits (68), Expect = 0.28
 Identities = 31/103 (30%), Positives = 39/103 (37%), Gaps = 22/103 (21%)

Query: 23  SPRPQHSNRTWRLRRRRQSVARSGGGSNRRRSRERRGQNPASLAQGEVAPVGAQRDTQTF 82
           SPRP         RR R      G GS R R R R  ++P +   G VA           
Sbjct: 61  SPRPFPPRPERPSRRHRAGCGAHGPGS-RGRERRRGSRDPPA---GPVA----------- 105

Query: 83  QQRPQRQNKIVQGAAHPHSAETLPRTSLAAVFPLAPPPTWNKA 125
             R + + +   G+A P S    P     A  P A PP W+ A
Sbjct: 106 --RARARGRSAPGSAQPASGAAGP-----AAAPEAAPPAWDPA 141


>gi|239751449 PREDICTED: hypothetical protein XP_002347867 [Homo
           sapiens]
          Length = 315

 Score = 30.8 bits (68), Expect = 0.28
 Identities = 31/103 (30%), Positives = 39/103 (37%), Gaps = 22/103 (21%)

Query: 23  SPRPQHSNRTWRLRRRRQSVARSGGGSNRRRSRERRGQNPASLAQGEVAPVGAQRDTQTF 82
           SPRP         RR R      G GS R R R R  ++P +   G VA           
Sbjct: 61  SPRPFPPRPERPSRRHRAGCGAHGPGS-RGRERRRGSRDPPA---GPVA----------- 105

Query: 83  QQRPQRQNKIVQGAAHPHSAETLPRTSLAAVFPLAPPPTWNKA 125
             R + + +   G+A P S    P     A  P A PP W+ A
Sbjct: 106 --RARARGRSAPGSAQPASGAAGP-----AAAPEAAPPAWDPA 141


>gi|239750574 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 1297

 Score = 30.8 bits (68), Expect = 0.28
 Identities = 26/77 (33%), Positives = 32/77 (41%), Gaps = 10/77 (12%)

Query: 5   GREERKSALRGVSWRHTPSPRPQHSNRTWRLRRRRQSVARSGGGSNRRRSRERR---GQN 61
           GR  R  A    S RH P  R + S       RRR +VA +GG    R +  RR   GQ 
Sbjct: 920 GRAHRPGAQGAPSHRHRPGARGRRS-------RRRAAVALAGGAHPARAALGRRRGGGQA 972

Query: 62  PASLAQGEVAPVGAQRD 78
             + A  +    G Q D
Sbjct: 973 VGARAAHQARLAGGQVD 989


>gi|239745954 PREDICTED: hypothetical protein XP_002343623 [Homo
           sapiens]
          Length = 315

 Score = 30.8 bits (68), Expect = 0.28
 Identities = 31/103 (30%), Positives = 39/103 (37%), Gaps = 22/103 (21%)

Query: 23  SPRPQHSNRTWRLRRRRQSVARSGGGSNRRRSRERRGQNPASLAQGEVAPVGAQRDTQTF 82
           SPRP         RR R      G GS R R R R  ++P +   G VA           
Sbjct: 61  SPRPFPPRPERPSRRHRAGCGAHGPGS-RGRERRRGSRDPPA---GPVA----------- 105

Query: 83  QQRPQRQNKIVQGAAHPHSAETLPRTSLAAVFPLAPPPTWNKA 125
             R + + +   G+A P S    P     A  P A PP W+ A
Sbjct: 106 --RARARGRSAPGSAQPASGAAGP-----AAAPEAAPPAWDPA 141


>gi|169205732 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 1297

 Score = 30.8 bits (68), Expect = 0.28
 Identities = 26/77 (33%), Positives = 32/77 (41%), Gaps = 10/77 (12%)

Query: 5   GREERKSALRGVSWRHTPSPRPQHSNRTWRLRRRRQSVARSGGGSNRRRSRERR---GQN 61
           GR  R  A    S RH P  R + S       RRR +VA +GG    R +  RR   GQ 
Sbjct: 920 GRAHRPGAQGAPSHRHRPGARGRRS-------RRRAAVALAGGAHPARAALGRRRGGGQA 972

Query: 62  PASLAQGEVAPVGAQRD 78
             + A  +    G Q D
Sbjct: 973 VGARAAHQARLAGGQVD 989


>gi|239743051 PREDICTED: hypothetical protein XP_002342747 [Homo
           sapiens]
          Length = 306

 Score = 30.4 bits (67), Expect = 0.36
 Identities = 28/97 (28%), Positives = 39/97 (40%), Gaps = 5/97 (5%)

Query: 21  TPSPRPQHSNRTWRLRRRRQSVARSGGGSNRRR-SRERRGQNPASLAQGEVAPVGAQRDT 79
           T +P P  S      R+R Q   +  GG+ +RR SR    + PA    G     G++   
Sbjct: 178 TAAPVPTSSGHRTEKRKRLQLQCQPAGGTGQRRGSRSSPSRQPAG---GTGQRRGSRSSP 234

Query: 80  QTFQQRPQ-RQNKIVQGAAHPHSAETLPRTSLAAVFP 115
              QQR Q R+ +  Q    P       R + AA  P
Sbjct: 235 SADQQRAQDREEEAAQPQRRPAGGTGQRRGTAAAPVP 271


>gi|239508698 PREDICTED: similar to mucin [Homo sapiens]
          Length = 265

 Score = 30.4 bits (67), Expect = 0.36
 Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 12/93 (12%)

Query: 23  SPRPQHSNRTWRLRRRRQSVARSGGGSNRRRSRERRGQNPASLAQG--------EVAPVG 74
           +P P  S      R+ +Q   R  GG+ +RR     G +P++  QG          AP  
Sbjct: 92  APAPTSSGHRTEKRKPQQPQCRPAGGTGQRRG---SGSSPSADQQGAQDREEEAAAAPAP 148

Query: 75  AQRDTQTFQQRPQR-QNKIVQGAAHPHSAETLP 106
             R  +T +++PQ+ Q +   G      + + P
Sbjct: 149 TSRGHRTEKRKPQQPQRRPAAGTGQRRGSRSSP 181


>gi|40353729 Ras and Rab interactor 3 [Homo sapiens]
          Length = 985

 Score = 30.4 bits (67), Expect = 0.36
 Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 10/77 (12%)

Query: 51  RRRSRER---RGQNPASLAQGEVAPVGAQRDTQTFQQRPQRQNKIVQG----AAHPHSAE 103
           RRR  ER     Q+P   A+G+   +  Q  +   +  P+   +  Q     A+ PHS  
Sbjct: 388 RRRVSERVSLEDQSPGMAAEGDQLSLPPQGTSDGPEDTPRESTEQGQDTEVKASDPHSMP 447

Query: 104 TLPRTSLAAVFPLAPPP 120
            LPRT   A  P  PPP
Sbjct: 448 ELPRT---AKQPPVPPP 461


>gi|89276756 serine/threonine-protein kinase PRP4K [Homo sapiens]
          Length = 1007

 Score = 30.4 bits (67), Expect = 0.36
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 19  RHTPSPRPQHSNRTWRLRRRRQSVARSGGGSNRRRSRERRGQNPASLAQG 68
           R + SPR +   R  R R RR+S +R GG   R RS+ +  +   SL++G
Sbjct: 463 RRSRSPRRRDRGRRSRSRLRRRSRSR-GGRRRRSRSKVKEDKFKGSLSEG 511


>gi|169214061 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 384

 Score = 30.0 bits (66), Expect = 0.47
 Identities = 25/85 (29%), Positives = 33/85 (38%), Gaps = 4/85 (4%)

Query: 22  PSPRPQHSNRTWRL--RRRRQSVARSGGGSNRRRSRERRGQNPASLAQGEVAPVGAQRDT 79
           P  RP  S   WRL  RRR +  A S G  + RR+    G   A        P  A    
Sbjct: 218 PEQRPHLSRGQWRLLPRRRPERAAGSAGSCSSRRALPASGSGAAMTGSWAAPPRPAWAGL 277

Query: 80  QTF--QQRPQRQNKIVQGAAHPHSA 102
             F   +R +RQ+ +      P S+
Sbjct: 278 GPFWHLRRSRRQDGLCCPGPRPPSS 302


>gi|169214437 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 384

 Score = 30.0 bits (66), Expect = 0.47
 Identities = 25/85 (29%), Positives = 33/85 (38%), Gaps = 4/85 (4%)

Query: 22  PSPRPQHSNRTWRL--RRRRQSVARSGGGSNRRRSRERRGQNPASLAQGEVAPVGAQRDT 79
           P  RP  S   WRL  RRR +  A S G  + RR+    G   A        P  A    
Sbjct: 218 PEQRPHLSRGQWRLLPRRRPERAAGSAGSCSSRRALPASGSGAAMTGSWAAPPRPAWAGL 277

Query: 80  QTF--QQRPQRQNKIVQGAAHPHSA 102
             F   +R +RQ+ +      P S+
Sbjct: 278 GPFWHLRRSRRQDGLCCPGPRPPSS 302


>gi|169213353 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 384

 Score = 30.0 bits (66), Expect = 0.47
 Identities = 25/85 (29%), Positives = 33/85 (38%), Gaps = 4/85 (4%)

Query: 22  PSPRPQHSNRTWRL--RRRRQSVARSGGGSNRRRSRERRGQNPASLAQGEVAPVGAQRDT 79
           P  RP  S   WRL  RRR +  A S G  + RR+    G   A        P  A    
Sbjct: 218 PEQRPHLSRGQWRLLPRRRPERAAGSAGSCSSRRALPASGSGAAMTGSWAAPPRPAWAGL 277

Query: 80  QTF--QQRPQRQNKIVQGAAHPHSA 102
             F   +R +RQ+ +      P S+
Sbjct: 278 GPFWHLRRSRRQDGLCCPGPRPPSS 302


>gi|239745068 PREDICTED: similar to hCG2042704 [Homo sapiens]
          Length = 618

 Score = 30.0 bits (66), Expect = 0.47
 Identities = 21/54 (38%), Positives = 24/54 (44%), Gaps = 5/54 (9%)

Query: 25 RPQHSNRTWRLRRRRQSVARSGGGSNRRRSRERRGQNPASLAQGEVAPVGAQRD 78
          R  H  RT RL +     AR GGG  R     RRG +PA        PV  +RD
Sbjct: 6  RHNHGRRTGRLSQS----AREGGGWARPARAARRGGHPAHFCWSR-PPVSRERD 54


>gi|40805108 putative small membrane protein NID67 [Homo sapiens]
          Length = 135

 Score = 30.0 bits (66), Expect = 0.47
 Identities = 26/90 (28%), Positives = 37/90 (41%), Gaps = 8/90 (8%)

Query: 3  VVGREERKSALRGVSWRHTPSPRPQ---HSNRTWRLRRRRQSVARSGGGSNRRRSRERRG 59
          V G  E   +L  ++    P   PQ       +W  R       RSGGG  + R  E   
Sbjct: 12 VEGEPETPWSLPSLAGSFLPERSPQGTLEEELSWSCRG--PGTGRSGGGPQQPRIPEPAA 69

Query: 60 QNPASLAQGEVAPVGAQRDTQTFQQRPQRQ 89
          +   S A   + P GA+R   TFQ+ P+ +
Sbjct: 70 RPGRSCA---LPPPGARRSRGTFQELPRAE 96


>gi|7706607 LEM domain containing 3 [Homo sapiens]
          Length = 911

 Score = 30.0 bits (66), Expect = 0.47
 Identities = 17/55 (30%), Positives = 24/55 (43%)

Query: 21 TPSPRPQHSNRTWRLRRRRQSVARSGGGSNRRRSRERRGQNPASLAQGEVAPVGA 75
          T S RP +  +  +LR   Q   RSGG  N+ R+        A++A    A   A
Sbjct: 32 TESTRPVYLKKLKKLREEEQQQHRSGGRGNKTRNSNNNNTAAATVAAAGPAAAAA 86


>gi|4557779 myocilin [Homo sapiens]
          Length = 504

 Score = 29.6 bits (65), Expect = 0.62
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 6/57 (10%)

Query: 34  RLRRRRQSVARSGGGSNRRRSRERRGQNPASLAQGEVAPVGAQR------DTQTFQQ 84
           RLR+  +++AR    S++  +R RRGQ P +       P G++       DT  FQ+
Sbjct: 158 RLRQENENLARRLESSSQEVARLRRGQCPQTRDTARAVPPGSREVSTWNLDTLAFQE 214


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.127    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,686,544
Number of Sequences: 37866
Number of extensions: 254904
Number of successful extensions: 1755
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 128
Number of HSP's that attempted gapping in prelim test: 1568
Number of HSP's gapped (non-prelim): 289
length of query: 125
length of database: 18,247,518
effective HSP length: 90
effective length of query: 35
effective length of database: 14,839,578
effective search space: 519385230
effective search space used: 519385230
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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