Guide to the Human Genome
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Name: LOC645955 Sequence: fasta or formatted (125aa) NCBI GI: 88953651
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {125aa} PREDICTED: hypothetical protein
alt mRNA {125aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.4         13           2
 C cysteine            0.0          0           0
 D aspartate           0.8          1           1
 E glutamate           4.0          5           2
 F phenylalanine       1.6          2           1
 G glycine             7.2          9           3
 H histidine           3.2          4           1
 I isoleucine          0.8          1           1
 K lysine              2.4          3           1
 L leucine             5.6          7           1
 M methionine          0.8          1           1
 N asparagine          4.0          5           1
 P proline             9.6         12           3
 Q glutamine           8.8         11           2
 R arginine           17.6         22           4
 S serine              8.8         11           1
 T threonine           5.6          7           1
 V valine              6.4          8           2
 W tryptophan          2.4          3           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC645955             1.000   PREDICTED: hypothetical protein 
LOC645955             1.000   PREDICTED: hypothetical protein 
RSRC1                 0.034   arginine/serine-rich coiled-coil 1 
SRRM2                 0.034   splicing coactivator subunit SRm300 
LOC100289224          0.030   PREDICTED: hypothetical protein XP_002344297 
SCAF1                 0.030   SR-related CTD-associated factor 1 
HEMGN                 0.030   hemogen 
HEMGN                 0.030   hemogen 
LOC730060             0.026   PREDICTED: hypothetical protein 
LOC730060             0.026   PREDICTED: hypothetical protein 
LOC730060             0.026   PREDICTED: hypothetical protein 
SRRM1                 0.026   serine/arginine repetitive matrix 1 
FHOD3                 0.026   formin homology 2 domain containing 3 
LOC100292172          0.026   PREDICTED: hypothetical protein 
LOC100289763          0.026   PREDICTED: hypothetical protein XP_002347867 
LOC728767             0.026   PREDICTED: hypothetical protein 
LOC100289681          0.026   PREDICTED: hypothetical protein XP_002343623 
LOC728767             0.026   PREDICTED: hypothetical protein 
LOC100288496          0.022   PREDICTED: hypothetical protein XP_002342747 
LOC100134702          0.022   PREDICTED: similar to mucin 
RIN3                  0.022   Ras and Rab interactor 3 
PRPF4B                0.022   serine/threonine-protein kinase PRP4K 
LOC100128398          0.022   PREDICTED: hypothetical protein 
LOC100128398          0.022   PREDICTED: hypothetical protein 
LOC100128398          0.022   PREDICTED: hypothetical protein 
LOC646396             0.022   PREDICTED: similar to hCG2042704 
MST150                0.022   putative small membrane protein NID67 
LEMD3                 0.022   LEM domain containing 3 
MYOC                  0.022   myocilin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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